AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680032439.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032439.01.T01 MTR_6g042690 89.623 212 12 1 1 212 132 333 3.16e-141 397
MsG0680032439.01.T01 MTR_6g042660 74.528 212 44 1 1 212 125 326 8.43e-117 335
MsG0680032439.01.T01 MTR_0408s0030 90.400 125 12 0 88 212 29 153 2.03e-85 249
MsG0680032439.01.T01 MTR_1g033050 57.944 214 72 3 1 207 106 308 1.39e-80 243
MsG0680032439.01.T01 MTR_5g093970 43.868 212 106 5 1 211 134 333 1.92e-48 161
MsG0680032439.01.T01 MTR_4g051810 44.000 200 95 4 18 211 133 321 1.43e-47 159
MsG0680032439.01.T01 MTR_5g088300 45.408 196 95 3 19 211 134 320 3.97e-47 158
MsG0680032439.01.T01 MTR_6g088810 41.232 211 111 3 1 209 180 379 2.35e-45 154
MsG0680032439.01.T01 MTR_8g036225 41.176 221 109 5 1 211 117 326 2.47e-45 153
MsG0680032439.01.T01 MTR_5g088290 42.523 214 105 4 1 211 134 332 2.83e-45 153
MsG0680032439.01.T01 MTR_5g088280 41.121 214 108 4 1 211 124 322 2.91e-44 150
MsG0680032439.01.T01 MTR_8g102380 40.000 210 113 3 1 208 180 378 7.01e-44 150
MsG0680032439.01.T01 MTR_6g012800 41.579 190 97 3 18 204 120 298 1.65e-43 148
MsG0680032439.01.T01 MTR_7g102600 37.963 216 117 2 1 209 191 396 1.83e-43 150
MsG0680032439.01.T01 MTR_7g092780 37.327 217 115 3 1 207 182 387 1.06e-42 148
MsG0680032439.01.T01 MTR_1g086540 40.741 189 99 3 1 187 148 325 2.85e-40 140
MsG0680032439.01.T01 MTR_5g095490 38.071 197 109 3 13 207 172 357 7.04e-40 140
MsG0680032439.01.T01 MTR_6g024165 39.216 204 110 4 1 201 137 329 8.24e-40 139
MsG0680032439.01.T01 MTR_7g011530 40.526 190 99 3 18 204 120 298 1.31e-39 138
MsG0680032439.01.T01 MTR_5g012600 35.714 210 121 4 1 207 161 359 2.89e-38 135
MsG0680032439.01.T01 MTR_7g112580 39.560 182 100 4 1 182 333 504 1.94e-37 136
MsG0680032439.01.T01 MTR_2g033970 39.412 170 99 1 32 201 176 341 3.34e-36 130
MsG0680032439.01.T01 MTR_2g044880 37.245 196 94 4 1 182 307 487 1.90e-35 131
MsG0680032439.01.T01 MTR_4g124520 34.742 213 120 5 13 212 309 515 1.91e-35 131
MsG0680032439.01.T01 MTR_1g083520 37.629 194 99 4 1 182 308 491 2.30e-35 130
MsG0680032439.01.T01 MTR_4g087970 37.755 196 93 4 1 182 299 479 6.40e-35 129
MsG0680032439.01.T01 MTR_1g083510 38.587 184 91 5 13 182 371 546 1.85e-34 129
MsG0680032439.01.T01 MTR_4g087980 36.735 196 95 4 1 182 298 478 1.99e-34 128
MsG0680032439.01.T01 MTR_8g023310 37.696 191 100 4 1 182 371 551 2.39e-34 128
MsG0680032439.01.T01 MTR_7g108900 36.788 193 99 4 1 182 343 523 3.13e-34 128
MsG0680032439.01.T01 MTR_8g102380 42.236 161 81 2 1 159 180 330 6.87e-34 124
MsG0680032439.01.T01 MTR_4g074290 33.019 212 133 4 1 211 162 365 1.13e-33 124
MsG0680032439.01.T01 MTR_0458s0030 34.545 220 118 6 1 207 97 303 2.06e-33 122
MsG0680032439.01.T01 MTR_1g088040 34.545 220 118 6 1 207 97 303 2.06e-33 122
MsG0680032439.01.T01 MTR_7g108890 36.979 192 102 3 1 183 345 526 3.62e-33 125
MsG0680032439.01.T01 MTR_2g436040 34.021 194 109 3 13 195 331 516 3.64e-33 125
MsG0680032439.01.T01 MTR_2g073390 32.547 212 134 3 1 211 162 365 8.66e-33 121
MsG0680032439.01.T01 MTR_8g042910 36.979 192 100 4 1 182 395 575 1.07e-32 124
MsG0680032439.01.T01 MTR_7g053360 39.227 181 93 4 13 182 315 489 1.08e-32 123
MsG0680032439.01.T01 MTR_0009s0350 32.692 208 131 3 5 211 166 365 1.43e-32 120
MsG0680032439.01.T01 MTR_0009s0340 32.692 208 131 3 5 211 166 365 1.43e-32 120
MsG0680032439.01.T01 MTR_1g088020 36.788 193 99 4 1 182 338 518 2.61e-32 122
MsG0680032439.01.T01 MTR_2g044810 34.444 180 104 2 13 183 255 429 2.62e-32 122
MsG0680032439.01.T01 MTR_3g008720 39.227 181 93 4 13 182 315 489 3.71e-32 122
MsG0680032439.01.T01 MTR_2g044810 34.444 180 104 2 13 183 324 498 3.83e-32 122
MsG0680032439.01.T01 MTR_3g008640 39.227 181 93 4 13 182 315 489 4.40e-32 122
MsG0680032439.01.T01 MTR_8g042900 37.143 175 100 3 13 182 375 544 4.98e-32 122
MsG0680032439.01.T01 MTR_3g010780 36.170 188 103 4 1 182 361 537 7.22e-32 121
MsG0680032439.01.T01 MTR_0618s0020 35.938 192 102 4 1 182 10 190 7.25e-32 115
MsG0680032439.01.T01 MTR_3g008700 38.674 181 94 4 13 182 315 489 1.13e-31 120
MsG0680032439.01.T01 MTR_3g033690 38.674 181 94 4 13 182 314 488 1.23e-31 120
MsG0680032439.01.T01 MTR_4g025690 35.938 192 101 4 1 182 296 475 1.43e-31 120
MsG0680032439.01.T01 MTR_7g108875 36.269 193 100 4 1 182 347 527 1.72e-31 120
MsG0680032439.01.T01 MTR_2g044660 33.171 205 111 4 1 194 419 608 2.03e-31 120
MsG0680032439.01.T01 MTR_3g010770 35.602 191 104 4 1 182 358 538 2.38e-31 120
MsG0680032439.01.T01 MTR_4g025730 35.450 189 104 3 1 182 294 471 3.33e-31 119
MsG0680032439.01.T01 MTR_1g054880 36.269 193 100 4 1 182 341 521 3.78e-31 119
MsG0680032439.01.T01 MTR_4g124740 37.089 213 113 7 1 211 150 343 4.76e-31 116
MsG0680032439.01.T01 MTR_8g104645 35.938 192 102 4 1 182 154 334 8.59e-31 116
MsG0680032439.01.T01 MTR_4g025670 35.938 192 102 4 1 182 271 451 8.82e-31 117
MsG0680032439.01.T01 MTR_1g088225 34.091 220 117 7 1 207 338 542 2.22e-30 117
MsG0680032439.01.T01 MTR_8g104655 35.938 192 102 4 1 182 323 503 2.73e-30 117
MsG0680032439.01.T01 MTR_8g088610 33.516 182 106 3 13 184 166 342 5.19e-30 114
MsG0680032439.01.T01 MTR_7g108905 34.375 192 105 4 1 182 338 518 5.49e-30 116
MsG0680032439.01.T01 MTR_8g093460 34.272 213 107 4 18 208 340 541 5.93e-30 116
MsG0680032439.01.T01 MTR_3g091380 36.413 184 93 3 13 182 386 559 8.90e-30 115
MsG0680032439.01.T01 MTR_1g086210 33.520 179 105 2 13 182 352 525 1.01e-29 115
MsG0680032439.01.T01 MTR_1g008140 36.313 179 100 2 13 182 396 569 1.19e-29 115
MsG0680032439.01.T01 MTR_1g086190 33.161 193 110 3 1 184 347 529 1.24e-29 115
MsG0680032439.01.T01 MTR_8g023150 36.158 177 101 4 13 182 373 544 1.44e-29 115
MsG0680032439.01.T01 MTR_4g124550 33.508 191 108 3 1 182 377 557 1.54e-29 115
MsG0680032439.01.T01 MTR_2g436600 36.264 182 99 4 24 201 163 331 2.26e-29 112
MsG0680032439.01.T01 MTR_1g083470 34.010 197 102 5 1 182 350 533 2.38e-29 114
MsG0680032439.01.T01 MTR_1g083500 34.010 197 102 5 1 182 350 533 2.38e-29 114
MsG0680032439.01.T01 MTR_4g005170 34.010 197 102 5 1 182 355 538 3.80e-29 114
MsG0680032439.01.T01 MTR_4g035980 38.378 185 89 5 13 182 327 501 6.13e-29 113
MsG0680032439.01.T01 MTR_7g050950 33.333 186 98 4 13 182 341 516 8.55e-29 112
MsG0680032439.01.T01 MTR_1g083490 34.010 197 102 5 1 182 355 538 1.07e-28 112
MsG0680032439.01.T01 MTR_4g005180 33.503 197 103 5 1 182 337 520 3.28e-28 111
MsG0680032439.01.T01 MTR_4g120280 33.149 181 102 3 13 182 357 529 3.72e-28 111
MsG0680032439.01.T01 MTR_4g120290 33.333 183 99 3 13 182 357 529 3.73e-28 111
MsG0680032439.01.T01 MTR_7g050870 33.702 181 104 3 13 182 341 516 1.15e-27 109
MsG0680032439.01.T01 MTR_7g050980 34.807 181 102 4 13 182 342 517 2.54e-27 108
MsG0680032439.01.T01 MTR_8g104580 33.871 186 98 4 9 182 290 462 2.64e-27 108
MsG0680032439.01.T01 MTR_3g095920 32.381 210 125 4 13 208 348 554 2.89e-27 108
MsG0680032439.01.T01 MTR_7g110440 32.759 174 103 2 18 182 363 531 2.93e-27 108
MsG0680032439.01.T01 MTR_7g110560 34.409 186 103 4 13 186 339 517 2.98e-27 108
MsG0680032439.01.T01 MTR_2g105560 34.104 173 96 3 19 182 138 301 1.33e-26 104
MsG0680032439.01.T01 MTR_5g083620 33.514 185 107 4 13 186 145 324 2.58e-26 104
MsG0680032439.01.T01 MTR_2g436050 33.520 179 104 3 13 182 349 521 4.91e-26 105
MsG0680032439.01.T01 MTR_7g110490 31.414 191 112 3 1 182 351 531 1.38e-25 103
MsG0680032439.01.T01 MTR_7g110510 31.414 191 112 3 1 182 351 531 1.38e-25 103
MsG0680032439.01.T01 MTR_7g112590 29.557 203 117 5 13 200 370 561 1.45e-25 103
MsG0680032439.01.T01 MTR_7g107180 32.370 173 99 3 19 182 106 269 8.84e-25 99.4
MsG0680032439.01.T01 MTR_7g110420 30.882 204 104 6 1 182 351 539 6.23e-24 99.4
MsG0680032439.01.T01 MTR_7g111560 28.161 174 114 2 19 182 344 516 7.41e-20 87.4
MsG0680032439.01.T01 MTR_4g130790 45.045 111 50 3 1 107 114 217 6.21e-19 82.8
MsG0680032439.01.T01 MTR_6g024200 37.121 132 75 4 82 208 149 277 1.57e-18 82.0
MsG0680032439.01.T01 MTR_6g025590 52.055 73 32 1 1 73 147 216 1.20e-16 76.3
MsG0680032439.01.T01 MTR_7g110430 26.437 174 80 2 18 182 363 497 2.30e-16 77.4
MsG0680032439.01.T01 MTR_7g102570 39.394 99 52 2 83 174 3 100 2.54e-15 69.7
MsG0680032439.01.T01 MTR_0458s0010 34.783 92 55 3 118 207 419 507 4.97e-11 61.6
MsG0680032439.01.T01 MTR_6g006340 48.148 54 28 0 20 73 49 102 7.55e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032439.01.T01 AT5G18990 48.585 212 88 3 1 201 117 318 5.10e-67 209
MsG0680032439.01.T01 AT3G24130 48.113 212 89 3 1 201 122 323 7.96e-67 209
MsG0680032439.01.T01 AT2G19150 41.818 220 109 3 1 212 129 337 4.70e-54 176
MsG0680032439.01.T01 AT2G47280 42.986 221 106 4 1 212 123 332 1.58e-53 174
MsG0680032439.01.T01 AT2G36700 42.512 207 112 2 1 207 134 333 4.11e-49 163
MsG0680032439.01.T01 AT1G05310 38.756 209 127 1 1 209 183 390 2.93e-48 162
MsG0680032439.01.T01 AT2G36710 38.889 216 114 3 1 209 183 387 1.41e-47 161
MsG0680032439.01.T01 AT5G26810 43.147 197 102 4 19 211 147 337 2.81e-45 153
MsG0680032439.01.T01 AT2G21610 40.306 196 104 3 18 211 152 336 2.27e-44 151
MsG0680032439.01.T01 AT2G21610 40.306 196 104 3 18 211 157 341 2.91e-44 151
MsG0680032439.01.T01 AT5G19730 41.429 210 108 3 1 207 184 381 5.17e-44 151
MsG0680032439.01.T01 AT2G19150 43.713 167 76 2 1 159 129 285 1.32e-41 142
MsG0680032439.01.T01 AT3G17060 40.097 207 108 3 1 201 135 331 5.28e-41 142
MsG0680032439.01.T01 AT5G47500 36.190 210 120 4 1 207 159 357 1.45e-39 139
MsG0680032439.01.T01 AT3G10720 37.915 211 108 5 1 199 42 241 2.64e-39 136
MsG0680032439.01.T01 AT3G29090 38.220 191 104 3 18 205 121 300 5.40e-38 134
MsG0680032439.01.T01 AT3G05620 39.560 182 100 3 1 182 333 504 3.58e-37 136
MsG0680032439.01.T01 AT3G10720 37.915 211 108 5 1 199 398 597 3.61e-37 136
MsG0680032439.01.T01 AT5G04970 36.667 210 112 4 1 199 403 602 8.41e-37 135
MsG0680032439.01.T01 AT4G33220 40.761 184 85 3 13 182 191 364 8.88e-36 130
MsG0680032439.01.T01 AT4G33220 40.761 184 85 3 13 182 312 485 2.37e-35 130
MsG0680032439.01.T01 AT5G07430 33.333 204 122 4 1 201 158 350 3.78e-34 125
MsG0680032439.01.T01 AT3G59010 37.349 166 98 1 18 183 332 491 1.39e-33 126
MsG0680032439.01.T01 AT5G49180 36.111 180 99 3 18 186 365 539 1.68e-33 126
MsG0680032439.01.T01 AT1G23200 36.923 195 110 2 13 199 352 541 1.73e-33 126
MsG0680032439.01.T01 AT2G45220 36.458 192 100 4 1 182 295 474 2.07e-33 125
MsG0680032439.01.T01 AT2G47550 35.922 206 115 5 13 207 348 547 4.94e-33 124
MsG0680032439.01.T01 AT4G02330 37.173 191 101 3 1 182 354 534 4.94e-33 125
MsG0680032439.01.T01 AT4G33230 36.041 197 96 5 1 182 389 570 8.64e-33 124
MsG0680032439.01.T01 AT5G61680 33.168 202 122 3 3 201 162 353 1.39e-32 120
MsG0680032439.01.T01 AT5G27870 35.071 211 110 5 13 207 352 551 1.41e-32 124
MsG0680032439.01.T01 AT2G43050 33.493 209 121 4 13 211 314 514 1.99e-32 122
MsG0680032439.01.T01 AT2G26450 36.041 197 96 5 1 182 394 575 2.53e-32 123
MsG0680032439.01.T01 AT3G06830 35.000 180 101 3 18 186 363 537 3.95e-32 122
MsG0680032439.01.T01 AT1G53830 35.754 179 101 2 13 182 376 549 4.72e-32 122
MsG0680032439.01.T01 AT3G43270 38.587 184 89 4 13 182 314 487 7.25e-32 121
MsG0680032439.01.T01 AT4G03930 36.508 189 103 3 1 182 308 486 8.32e-32 121
MsG0680032439.01.T01 AT5G07420 33.503 197 117 4 18 211 174 359 8.33e-32 119
MsG0680032439.01.T01 AT3G05610 33.649 211 109 5 13 208 355 549 8.74e-32 122
MsG0680032439.01.T01 AT5G04960 36.571 175 101 2 13 182 357 526 1.25e-31 120
MsG0680032439.01.T01 AT3G60730 36.957 184 92 3 13 182 308 481 1.86e-31 120
MsG0680032439.01.T01 AT4G00190 37.017 181 93 3 13 182 266 436 6.27e-31 118
MsG0680032439.01.T01 AT1G02810 35.602 191 104 3 1 182 360 540 9.18e-31 118
MsG0680032439.01.T01 AT5G55590 36.702 188 111 1 13 200 193 372 9.73e-31 116
MsG0680032439.01.T01 AT3G14300 38.122 181 91 5 13 182 760 930 1.19e-30 119
MsG0680032439.01.T01 AT3G27980 35.979 189 104 3 1 182 281 459 1.94e-30 117
MsG0680032439.01.T01 AT2G26440 34.637 179 103 2 13 182 337 510 2.26e-30 117
MsG0680032439.01.T01 AT5G09760 34.123 211 106 4 18 206 347 546 3.57e-30 117
MsG0680032439.01.T01 AT5G09760 34.123 211 106 4 18 206 373 572 3.92e-30 117
MsG0680032439.01.T01 AT3G10710 36.571 175 101 2 13 182 355 524 5.41e-30 116
MsG0680032439.01.T01 AT1G11590 35.979 189 104 3 1 182 308 486 1.01e-29 115
MsG0680032439.01.T01 AT1G53840 37.017 181 92 6 13 182 380 549 1.02e-29 115
MsG0680032439.01.T01 AT1G69940 28.505 214 139 4 1 211 157 359 5.02e-29 111
MsG0680032439.01.T01 AT5G07410 28.505 214 139 4 1 211 157 359 7.07e-29 111
MsG0680032439.01.T01 AT3G14310 33.520 179 105 2 13 182 381 554 7.41e-29 113
MsG0680032439.01.T01 AT5G20860 33.880 183 106 3 11 182 295 473 9.72e-29 112
MsG0680032439.01.T01 AT5G64640 33.168 202 121 2 18 206 397 597 1.23e-28 112
MsG0680032439.01.T01 AT5G20860 33.880 183 106 3 11 182 323 501 1.29e-28 112
MsG0680032439.01.T01 AT5G55590 38.776 147 82 1 13 159 193 331 2.63e-28 108
MsG0680032439.01.T01 AT3G47400 36.364 198 95 6 1 182 374 556 4.12e-28 111
MsG0680032439.01.T01 AT1G11580 35.326 184 95 3 13 182 346 519 4.62e-28 110
MsG0680032439.01.T01 AT1G11580 35.326 184 95 3 13 182 367 540 5.81e-28 110
MsG0680032439.01.T01 AT5G53370 35.938 192 102 5 1 182 403 583 8.43e-28 110
MsG0680032439.01.T01 AT5G53370 35.938 192 102 5 1 182 367 547 8.65e-28 110
MsG0680032439.01.T01 AT2G47030 31.193 218 128 6 1 207 371 577 9.56e-28 110
MsG0680032439.01.T01 AT3G62170 32.673 202 119 6 18 208 383 578 1.93e-27 109
MsG0680032439.01.T01 AT4G02300 34.375 192 105 4 1 182 314 494 2.73e-27 108
MsG0680032439.01.T01 AT5G51490 35.233 193 104 4 1 182 316 498 5.47e-27 107
MsG0680032439.01.T01 AT2G47040 32.768 177 104 3 18 184 390 561 1.26e-26 107
MsG0680032439.01.T01 AT4G02320 31.731 208 124 5 13 208 307 508 8.44e-26 104
MsG0680032439.01.T01 AT5G51500 35.912 181 100 3 13 182 327 502 3.60e-25 102
MsG0680032439.01.T01 AT3G49220 32.609 184 100 3 13 182 430 603 2.93e-24 100
MsG0680032439.01.T01 AT3G49220 32.609 184 100 3 13 182 385 558 4.20e-24 99.8
MsG0680032439.01.T01 AT1G11370 34.868 152 75 3 13 150 145 286 1.07e-23 95.9
MsG0680032439.01.T01 AT4G15980 31.163 215 122 6 13 209 492 698 3.37e-23 97.4
MsG0680032439.01.T01 AT4G15980 30.693 202 118 4 13 200 502 695 3.79e-23 97.1

Find 76 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCACTCGGTTCTACAATTT+TGG 0.094955 6:-41242256 None:intergenic
ACCCAATTCTTGTTGTAAAA+TGG 0.096682 6:-41239594 None:intergenic
TTTAAAGATTGTCATATATT+TGG 0.122346 6:+41242162 MsG0680032439.01.T01:CDS
TATGCTGAGTATGGAAATTT+TGG 0.164097 6:+41243240 MsG0680032439.01.T01:CDS
AGTAAGTTGGGTTAAGAAAT+TGG 0.172613 6:+41243287 MsG0680032439.01.T01:CDS
TCATACAACAATCCTATAAA+TGG 0.175522 6:+41241228 MsG0680032439.01.T01:CDS
TACAAATTCAACCAATGATT+TGG 0.192369 6:+41238185 MsG0680032439.01.T01:five_prime_UTR
ACAAATCCATTTGTATCGTT+TGG 0.256932 6:-41242138 None:intergenic
AACTTTCGATTCCCATTTAT+AGG 0.258682 6:-41241240 None:intergenic
ACAAGAATTGGGTTTCCATT+AGG 0.290972 6:+41239604 MsG0680032439.01.T01:five_prime_UTR
CCCAATTCTTGTTGTAAAAT+GGG 0.295068 6:-41239593 None:intergenic
GGTGTTCCATATCAGTTATT+GGG 0.296103 6:+41242082 MsG0680032439.01.T01:CDS
CAAGAATTGGGTTTCCATTA+GGG 0.304767 6:+41239605 MsG0680032439.01.T01:five_prime_UTR
GGAAATGCAAATACTTACTT+AGG 0.322584 6:+41242183 MsG0680032439.01.T01:CDS
CACCGAAATTCACATGCTTC+TGG 0.322946 6:-41238225 None:intergenic
AACCGAGTGGTTGGGATTCA+TGG 0.323945 6:+41242268 MsG0680032439.01.T01:CDS
AGGTGTTCCATATCAGTTAT+TGG 0.324038 6:+41242081 MsG0680032439.01.T01:CDS
CAAATCCATTTGTATCGTTT+GGG 0.327633 6:-41242137 None:intergenic
CTAACTACATATGCTGAGTA+TGG 0.328068 6:+41243231 MsG0680032439.01.T01:CDS
TGATAATTAATCCATTCTTC+TGG 0.339054 6:-41243357 None:intergenic
ACAAATTCAACCAATGATTT+GGG 0.340913 6:+41238186 MsG0680032439.01.T01:five_prime_UTR
ACTGATGCTGATCTTTCAAT+AGG 0.364728 6:-41238158 None:intergenic
TATTTACCTCAAACAAAGAT+TGG 0.374711 6:-41241416 None:intergenic
AGAACTTACTCACGACTATC+AGG 0.377234 6:-41242294 None:intergenic
AAGTCCAACCTTCTCAATAT+TGG 0.381258 6:+41239990 MsG0680032439.01.T01:five_prime_UTR
AACGTTGAAGCCCAAATCAT+TGG 0.383435 6:-41238196 None:intergenic
CTTAACCCAACTTACTCTCT+TGG 0.392118 6:-41243280 None:intergenic
TTGGGTTTCCATTAGGGTTA+AGG 0.392555 6:+41239611 MsG0680032439.01.T01:five_prime_UTR
GATACCAGCCTTAACCCTAA+TGG 0.405443 6:-41239619 None:intergenic
AAGCCAATGCTCAATATTAC+CGG 0.410729 6:+41239475 MsG0680032439.01.T01:five_prime_UTR
ACAATAGTGGTTGATCAATC+AGG 0.418183 6:+41239528 MsG0680032439.01.T01:five_prime_UTR
ATTTCCATTCTCCACAATAG+TGG 0.432654 6:+41239515 MsG0680032439.01.T01:five_prime_UTR
GTGGTTGATCAATCAGGAAA+TGG 0.450381 6:+41239534 MsG0680032439.01.T01:five_prime_UTR
TACATTATATTGAAGGGAGC+TGG 0.454514 6:+41239919 MsG0680032439.01.T01:five_prime_UTR
CAAATCTTACATTATATTGA+AGG 0.457143 6:+41239912 MsG0680032439.01.T01:five_prime_UTR
TTATCAACACACCAGAAGAA+TGG 0.460847 6:+41243346 MsG0680032439.01.T01:CDS
GCTCAATATTACCGGAAAGT+TGG 0.465280 6:+41239483 MsG0680032439.01.T01:five_prime_UTR
GAAATGCAAATACTTACTTA+GGG 0.469272 6:+41242184 MsG0680032439.01.T01:CDS
TGAATCAATAGCAGATTGAA+TGG 0.470756 6:-41239568 None:intergenic
AATTGTAGAACCGAGTGGTT+GGG 0.471934 6:+41242260 MsG0680032439.01.T01:CDS
CATACAACAATCCTATAAAT+GGG 0.474935 6:+41241229 MsG0680032439.01.T01:CDS
GGGTTAAGGCTGGTATCTAT+AGG 0.476683 6:+41239625 MsG0680032439.01.T01:five_prime_UTR
GCTGTGGCTGCATCTGTTAG+TGG 0.479599 6:+41241267 MsG0680032439.01.T01:CDS
TACATCCAAGAGAGTAAGTT+GGG 0.482489 6:+41243275 MsG0680032439.01.T01:CDS
ATGAGCCCAAACGATACAAA+TGG 0.486299 6:+41242132 MsG0680032439.01.T01:CDS
TCAACCACTATTGTGGAGAA+TGG 0.490175 6:-41239519 None:intergenic
TGCAGGCCAATCTTTGTTTG+AGG 0.510972 6:+41241410 MsG0680032439.01.T01:CDS
GTTTCCATTAGGGTTAAGGC+TGG 0.513333 6:+41239615 MsG0680032439.01.T01:five_prime_UTR
CTCTTGGATGTATCAGCACC+AGG 0.514454 6:-41243264 None:intergenic
ACACCATGTAAGCTTTAGAA+TGG 0.521769 6:-41243381 None:intergenic
GTTGAATGGTATGATCCAAA+TGG 0.525356 6:+41239958 MsG0680032439.01.T01:five_prime_UTR
TCTGCCAATATTGAGAAGGT+TGG 0.531727 6:-41239994 None:intergenic
TGATTGATCAACCACTATTG+TGG 0.536524 6:-41239526 None:intergenic
AAATTGTAGAACCGAGTGGT+TGG 0.536909 6:+41242259 MsG0680032439.01.T01:CDS
TTTCCGGTAATATTGAGCAT+TGG 0.541662 6:-41239478 None:intergenic
CTTGTAGTAGTGTCTTCCAT+TGG 0.554326 6:-41241349 None:intergenic
GTGTTCCATATCAGTTATTG+GGG 0.555581 6:+41242083 MsG0680032439.01.T01:CDS
ATAATGTAAGATTTGTTCTG+TGG 0.566377 6:-41239904 None:intergenic
ATACATCCAAGAGAGTAAGT+TGG 0.572850 6:+41243274 MsG0680032439.01.T01:CDS
AAATCTTACATTATATTGAA+GGG 0.580252 6:+41239913 MsG0680032439.01.T01:five_prime_UTR
TACAAGCTTTGTACTATACA+AGG 0.589219 6:+41241366 MsG0680032439.01.T01:CDS
ACTCTTGCATAAGGTCTCCA+TGG 0.590479 6:-41242210 None:intergenic
TTTAGCAACTATTGAAAACA+TGG 0.590839 6:+41243311 MsG0680032439.01.T01:CDS
CTCCATGAATCCCAACCACT+CGG 0.593800 6:-41242270 None:intergenic
TAATGTAAGATTTGTTCTGT+GGG 0.596292 6:-41239903 None:intergenic
TTTGATTTCACGTCTTGTCG+CGG 0.602420 6:+41238122 MsG0680032439.01.T01:five_prime_UTR
ATACTTACTTAGGGAGACCA+TGG 0.604260 6:+41242193 MsG0680032439.01.T01:CDS
GACACATTGTATGATGCCAA+TGG 0.613515 6:+41241333 MsG0680032439.01.T01:CDS
TTTCTCTGATAAGTACAAAG+AGG 0.615162 6:+41241440 MsG0680032439.01.T01:CDS
TGCATCTGTTAGTGGTGACA+AGG 0.621503 6:+41241275 MsG0680032439.01.T01:CDS
TGGATCATACCATTCAACAA+TGG 0.629490 6:-41239953 None:intergenic
GTTGTCTGCCAATATTGAGA+AGG 0.637806 6:-41239998 None:intergenic
GTGTTGTTCGTCGTCTTGTG+CGG 0.649307 6:+41238097 MsG0680032439.01.T01:five_prime_UTR
TCCAAAATTGTAGAACCGAG+TGG 0.697724 6:+41242255 MsG0680032439.01.T01:CDS
GAATCGAAAGTTACGTGCTG+TGG 0.702112 6:+41241251 MsG0680032439.01.T01:CDS
TGTTCCATATCAGTTATTGG+GGG 0.712373 6:+41242084 MsG0680032439.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAGAACAATTATT+TGG + Chr6:41240876-41240895 MsG0680032439.01.T01:intron 10.0%
!! ATAAATTTATCAAAAACATT+AGG - Chr6:41242799-41242818 None:intergenic 10.0%
!!! AGTTTTTTTTATTTCTAATA+GGG + Chr6:41239682-41239701 MsG0680032439.01.T01:intron 10.0%
!!! TAGTTTTTTTTATTTCTAAT+AGG + Chr6:41239681-41239700 MsG0680032439.01.T01:intron 10.0%
!!! TATCATTTTTAGATATAAAA+AGG + Chr6:41238566-41238585 MsG0680032439.01.T01:intron 10.0%
!!! TTTTTAAATAATTCAAAACT+AGG - Chr6:41238520-41238539 None:intergenic 10.0%
!!! TTTTTTATCATATTATTTGT+AGG + Chr6:41238255-41238274 MsG0680032439.01.T01:intron 10.0%
!! AAAAATTATTCACAAATTCA+AGG - Chr6:41241546-41241565 None:intergenic 15.0%
!! AAATCTTACATTATATTGAA+GGG + Chr6:41239913-41239932 MsG0680032439.01.T01:five_prime_UTR 15.0%
!! AATATTCAGTTGAAAATATT+TGG - Chr6:41238672-41238691 None:intergenic 15.0%
!! AATTATTTAATGTAAAGAGT+AGG + Chr6:41241627-41241646 MsG0680032439.01.T01:intron 15.0%
!! ACAATATTTAATAGATGATT+CGG - Chr6:41240361-41240380 None:intergenic 15.0%
!! ATCTTCAAAAAAAAAAACAA+GGG - Chr6:41243044-41243063 None:intergenic 15.0%
!! CAGTTAAAAAAAATATACTA+GGG + Chr6:41242740-41242759 MsG0680032439.01.T01:intron 15.0%
!! TAAATTAGAGAATAAAATGT+TGG + Chr6:41238982-41239001 MsG0680032439.01.T01:intron 15.0%
!! TAACTGCAAAAATTATATTA+AGG - Chr6:41242726-41242745 None:intergenic 15.0%
!! TATCTTCAAAAAAAAAAACA+AGG - Chr6:41243045-41243064 None:intergenic 15.0%
!! TTATGTTCAATCAAATAAAT+AGG + Chr6:41243122-41243141 MsG0680032439.01.T01:intron 15.0%
!! TTTAAAGATTGTCATATATT+TGG + Chr6:41242162-41242181 MsG0680032439.01.T01:CDS 15.0%
!!! AATAATGAGTGATATTTTAT+TGG - Chr6:41239217-41239236 None:intergenic 15.0%
!!! AATTATTCTTAGTTTTTTGA+CGG - Chr6:41239164-41239183 None:intergenic 15.0%
!!! AATTGAGCTATATTTTTTTA+AGG - Chr6:41238958-41238977 None:intergenic 15.0%
!!! ATGACAAATGTTTTTTTTAA+AGG - Chr6:41238895-41238914 None:intergenic 15.0%
!!! GAAGTTTCTAAAAAAATTTA+GGG - Chr6:41243022-41243041 None:intergenic 15.0%
!!! TAATTCTTTCTTTTCATTTT+GGG - Chr6:41241577-41241596 None:intergenic 15.0%
!!! TATTTTAATCAAAAGTCAAT+AGG + Chr6:41238701-41238720 MsG0680032439.01.T01:intron 15.0%
!!! TTAATTCTTTCTTTTCATTT+TGG - Chr6:41241578-41241597 None:intergenic 15.0%
!!! TTATTAAAACGTATATTTTG+AGG - Chr6:41238489-41238508 None:intergenic 15.0%
!!! TTCTTTAAAATAATATTGTG+TGG + Chr6:41239856-41239875 MsG0680032439.01.T01:intron 15.0%
!!! TTCTTTTTTTATCTATCATT+AGG - Chr6:41240868-41240887 None:intergenic 15.0%
!! AAAACATTAGGAAAAACAAA+TGG - Chr6:41242787-41242806 None:intergenic 20.0%
!! AAACAAATTTCAAATTGTTG+AGG - Chr6:41239382-41239401 None:intergenic 20.0%
!! AAACACAAAGATATCTTAAA+GGG - Chr6:41243168-41243187 None:intergenic 20.0%
!! AATTGAATGCAATATTGAAT+AGG - Chr6:41240236-41240255 None:intergenic 20.0%
!! ACTTTAATGATAAATGTTAG+TGG - Chr6:41239082-41239101 None:intergenic 20.0%
!! ATAAATGTGATTTCATACTA+AGG - Chr6:41242331-41242350 None:intergenic 20.0%
!! ATACGTTTGACAATTAAATA+TGG + Chr6:41239115-41239134 MsG0680032439.01.T01:intron 20.0%
!! ATAGGAGAAATAAAAATCAA+AGG - Chr6:41240218-41240237 None:intergenic 20.0%
!! ATATTAGTTACAATACAGAA+AGG + Chr6:41242498-41242517 MsG0680032439.01.T01:intron 20.0%
!! ATGTATGATTAATGCATATT+TGG - Chr6:41240413-41240432 None:intergenic 20.0%
!! ATTAATCCTATTTGTGATTT+AGG + Chr6:41241593-41241612 MsG0680032439.01.T01:intron 20.0%
!! CAAATCTTACATTATATTGA+AGG + Chr6:41239912-41239931 MsG0680032439.01.T01:five_prime_UTR 20.0%
!! CATGATTTAAATGAAACAAA+TGG - Chr6:41240149-41240168 None:intergenic 20.0%
!! CATTTAAAAAAAAATACGCT+TGG + Chr6:41238912-41238931 MsG0680032439.01.T01:intron 20.0%
!! CATTTGTTTCATTTAAATCA+TGG + Chr6:41240147-41240166 MsG0680032439.01.T01:intron 20.0%
!! GCAGTTAAAAAAAATATACT+AGG + Chr6:41242739-41242758 MsG0680032439.01.T01:intron 20.0%
!! TAAACACAAAGATATCTTAA+AGG - Chr6:41243169-41243188 None:intergenic 20.0%
!! TAATATTTATCAGTTCTCTT+AGG - Chr6:41242484-41242503 None:intergenic 20.0%
!! TGACATTAGAAAAGAATATA+AGG - Chr6:41240310-41240329 None:intergenic 20.0%
!! TTGTTTATTGAAATTTGTAG+AGG + Chr6:41242061-41242080 MsG0680032439.01.T01:intron 20.0%
!!! AAACTTTTGAATAACTTTTG+AGG - Chr6:41239778-41239797 None:intergenic 20.0%
!!! ACATTTATCCATTCTAAAAA+TGG + Chr6:41242343-41242362 MsG0680032439.01.T01:intron 20.0%
!!! ATAATTGTGAAATATTTTCC+AGG - Chr6:41238603-41238622 None:intergenic 20.0%
!!! ATATACTTTTTGCAGTTAAA+AGG + Chr6:41242651-41242670 MsG0680032439.01.T01:intron 20.0%
!!! ATATTTTATTTCCAACTTTC+CGG - Chr6:41239497-41239516 None:intergenic 20.0%
!!! ATTATTCTTAGTTTTTTGAC+GGG - Chr6:41239163-41239182 None:intergenic 20.0%
!!! CATGGTTTAATGTTTTATTT+TGG + Chr6:41240165-41240184 MsG0680032439.01.T01:intron 20.0%
!!! GGAAGTTTCTAAAAAAATTT+AGG - Chr6:41243023-41243042 None:intergenic 20.0%
!!! TGGATTAACACTATATTTTT+CGG + Chr6:41240654-41240673 MsG0680032439.01.T01:intron 20.0%
!!! TGTTTTTTTTAAAGGAAGAA+TGG - Chr6:41238887-41238906 None:intergenic 20.0%
! AAACATCGCTAAAAACTTAA+AGG - Chr6:41238337-41238356 None:intergenic 25.0%
! AACATCGCTAAAAACTTAAA+GGG - Chr6:41238336-41238355 None:intergenic 25.0%
! ACAAATTCAACCAATGATTT+GGG + Chr6:41238186-41238205 MsG0680032439.01.T01:five_prime_UTR 25.0%
! AGTAGAATTGAATGATTTCA+AGG - Chr6:41239733-41239752 None:intergenic 25.0%
! ATACCAAGCATTAAAATTAG+AGG - Chr6:41240441-41240460 None:intergenic 25.0%
! ATTACAAATATCTCAATCAG+AGG - Chr6:41239187-41239206 None:intergenic 25.0%
! CATACAACAATCCTATAAAT+GGG + Chr6:41241229-41241248 MsG0680032439.01.T01:CDS 25.0%
! CCCAAGTTAATAGAATAAAA+CGG - Chr6:41238288-41238307 None:intergenic 25.0%
! CTATAAATCATGAGTATAAG+TGG - Chr6:41239832-41239851 None:intergenic 25.0%
! CTTCATATCTATAAAGTCAT+AGG + Chr6:41243092-41243111 MsG0680032439.01.T01:intron 25.0%
! GAAATGCAAATACTTACTTA+GGG + Chr6:41242184-41242203 MsG0680032439.01.T01:CDS 25.0%
! GATATCTTAAAGGGAAAATA+TGG - Chr6:41243159-41243178 None:intergenic 25.0%
! GTAGAATTGAATGATTTCAA+GGG - Chr6:41239732-41239751 None:intergenic 25.0%
! TAAATTGGTCAAATAAGCTT+TGG - Chr6:41240546-41240565 None:intergenic 25.0%
! TAACCTCAAAAACAAGTATT+TGG + Chr6:41240901-41240920 MsG0680032439.01.T01:intron 25.0%
! TAATCAAAAGTCAATAGGTT+GGG + Chr6:41238706-41238725 MsG0680032439.01.T01:intron 25.0%
! TACAAATTCAACCAATGATT+TGG + Chr6:41238185-41238204 MsG0680032439.01.T01:five_prime_UTR 25.0%
! TACTAGTACACAATATAGAA+GGG + Chr6:41241488-41241507 MsG0680032439.01.T01:intron 25.0%
! TATCTTTGTGTTTATCTACT+TGG + Chr6:41243175-41243194 MsG0680032439.01.T01:intron 25.0%
! TATTTACCTCAAACAAAGAT+TGG - Chr6:41241419-41241438 None:intergenic 25.0%
! TCATACAACAATCCTATAAA+TGG + Chr6:41241228-41241247 MsG0680032439.01.T01:CDS 25.0%
! TCTTGAATTGAATTGGTATT+GGG + Chr6:41241519-41241538 MsG0680032439.01.T01:intron 25.0%
! TGAATTTGATCTTGAATGTT+AGG + Chr6:41240628-41240647 MsG0680032439.01.T01:intron 25.0%
! TGATAATTAATCCATTCTTC+TGG - Chr6:41243360-41243379 None:intergenic 25.0%
! TTAATCAAAAGTCAATAGGT+TGG + Chr6:41238705-41238724 MsG0680032439.01.T01:intron 25.0%
! TTGATTCCTAAATCACAAAT+AGG - Chr6:41241602-41241621 None:intergenic 25.0%
! TTTAGCAACTATTGAAAACA+TGG + Chr6:41243311-41243330 MsG0680032439.01.T01:CDS 25.0%
!! AAAAAGCAACTCTGAAAAAA+TGG - Chr6:41241302-41241321 None:intergenic 25.0%
!! AACTTTTTAACATATGCAAC+TGG - Chr6:41240066-41240085 None:intergenic 25.0%
!! ACAATAGAGTAATAACTTGT+TGG + Chr6:41241030-41241049 MsG0680032439.01.T01:intron 25.0%
!! ATAATGTAAGATTTGTTCTG+TGG - Chr6:41239907-41239926 None:intergenic 25.0%
!! GTATTTGGTTTAAGAATCTT+TGG + Chr6:41240916-41240935 MsG0680032439.01.T01:intron 25.0%
!! TAATGTAAGATTTGTTCTGT+GGG - Chr6:41239906-41239925 None:intergenic 25.0%
!! TCTTGAAATGAAATTTTGCA+GGG + Chr6:41243206-41243225 MsG0680032439.01.T01:intron 25.0%
!! TGCAAAAACCATATTGTTTT+TGG + Chr6:41242675-41242694 MsG0680032439.01.T01:intron 25.0%
!!! AAACCAAATACTTGTTTTTG+AGG - Chr6:41240907-41240926 None:intergenic 25.0%
!!! AAACCATATTGTTTTTGGTT+TGG + Chr6:41242680-41242699 MsG0680032439.01.T01:intron 25.0%
!!! AACCATATTGTTTTTGGTTT+GGG + Chr6:41242681-41242700 MsG0680032439.01.T01:intron 25.0%
!!! AAGGAAAGTTTCTAGTAAAA+AGG - Chr6:41239341-41239360 None:intergenic 25.0%
!!! AATAACTTTTGAGGATTTCA+AGG - Chr6:41239769-41239788 None:intergenic 25.0%
!!! ATAACTTTTGAGGATTTCAA+GGG - Chr6:41239768-41239787 None:intergenic 25.0%
!!! CCGTTTTATTCTATTAACTT+GGG + Chr6:41238285-41238304 MsG0680032439.01.T01:intron 25.0%
!!! GTTTTAAAGTTAGAACAATG+AGG - Chr6:41241836-41241855 None:intergenic 25.0%
!!! TTTTTCAGAGTTGCTTTTTA+TGG + Chr6:41241303-41241322 MsG0680032439.01.T01:CDS 25.0%
AAAAACGAACCATTGTTGAA+TGG + Chr6:41239944-41239963 MsG0680032439.01.T01:five_prime_UTR 30.0%
AACTTTCGATTCCCATTTAT+AGG - Chr6:41241243-41241262 None:intergenic 30.0%
AATCAAAAGTCAATAGGTTG+GGG + Chr6:41238707-41238726 MsG0680032439.01.T01:intron 30.0%
AATTAGCAACAAGCTTTACT+AGG + Chr6:41242557-41242576 MsG0680032439.01.T01:intron 30.0%
ACAAATCCATTTGTATCGTT+TGG - Chr6:41242141-41242160 None:intergenic 30.0%
ATAAGCATAACTCGGTATAT+AGG + Chr6:41240740-41240759 MsG0680032439.01.T01:intron 30.0%
ATAGTGGTGTGTGTATTTAT+GGG - Chr6:41239287-41239306 None:intergenic 30.0%
ATGCATGTCTTGAATTGAAT+TGG + Chr6:41241512-41241531 MsG0680032439.01.T01:intron 30.0%
ATTAGCAACAAGCTTTACTA+GGG + Chr6:41242558-41242577 MsG0680032439.01.T01:intron 30.0%
CAAATCCATTTGTATCGTTT+GGG - Chr6:41242140-41242159 None:intergenic 30.0%
CATTTATCTTTCTCTTGGTT+GGG + Chr6:41239439-41239458 MsG0680032439.01.T01:intron 30.0%
CCTTAATCATTAACTCAGAA+AGG - Chr6:41238785-41238804 None:intergenic 30.0%
CCTTTCTGAGTTAATGATTA+AGG + Chr6:41238782-41238801 MsG0680032439.01.T01:intron 30.0%
GATTTGTGTGTGAATGTAAA+AGG - Chr6:41239360-41239379 None:intergenic 30.0%
GGAAATGCAAATACTTACTT+AGG + Chr6:41242183-41242202 MsG0680032439.01.T01:CDS 30.0%
GTACTAGTACACAATATAGA+AGG + Chr6:41241487-41241506 MsG0680032439.01.T01:intron 30.0%
GTCTTGAATTGAATTGGTAT+TGG + Chr6:41241518-41241537 MsG0680032439.01.T01:intron 30.0%
TAAGAAAGATGACGCAAATT+AGG - Chr6:41241872-41241891 None:intergenic 30.0%
TAAGCATAACTCGGTATATA+GGG + Chr6:41240741-41240760 MsG0680032439.01.T01:intron 30.0%
TACCCAAACCAAAAACAATA+TGG - Chr6:41242686-41242705 None:intergenic 30.0%
TCACATTTCAAAGTGTACAA+GGG - Chr6:41240780-41240799 None:intergenic 30.0%
TGAATCAATAGCAGATTGAA+TGG - Chr6:41239571-41239590 None:intergenic 30.0%
TTCACATTTCAAAGTGTACA+AGG - Chr6:41240781-41240800 None:intergenic 30.0%
TTTCTCTGATAAGTACAAAG+AGG + Chr6:41241440-41241459 MsG0680032439.01.T01:CDS 30.0%
! AAAGTGGAGATTTTATTCTG+TGG - Chr6:41240467-41240486 None:intergenic 30.0%
! AAGTGGAGATTTTATTCTGT+GGG - Chr6:41240466-41240485 None:intergenic 30.0%
! ACCCAATTCTTGTTGTAAAA+TGG - Chr6:41239597-41239616 None:intergenic 30.0%
! AGTAAGTTGGGTTAAGAAAT+TGG + Chr6:41243287-41243306 MsG0680032439.01.T01:CDS 30.0%
! ATGTCAGATGTATGAGTTTT+CGG + Chr6:41240025-41240044 MsG0680032439.01.T01:exon 30.0%
! ATTTTCTTGCCCGATAAAAT+TGG + Chr6:41241665-41241684 MsG0680032439.01.T01:intron 30.0%
! CCCAATTCTTGTTGTAAAAT+GGG - Chr6:41239596-41239615 None:intergenic 30.0%
! CCCATTTTACAACAAGAATT+GGG + Chr6:41239593-41239612 MsG0680032439.01.T01:five_prime_UTR 30.0%
! GATTAATGCATATTTGGAAC+AGG - Chr6:41240407-41240426 None:intergenic 30.0%
! GTCTTGAAATGAAATTTTGC+AGG + Chr6:41243205-41243224 MsG0680032439.01.T01:intron 30.0%
! TACAAGCTTTGTACTATACA+AGG + Chr6:41241366-41241385 MsG0680032439.01.T01:CDS 30.0%
! TATGCTGAGTATGGAAATTT+TGG + Chr6:41243240-41243259 MsG0680032439.01.T01:CDS 30.0%
! TCCCATTTTACAACAAGAAT+TGG + Chr6:41239592-41239611 MsG0680032439.01.T01:five_prime_UTR 30.0%
! TTCTACAATTTTGGACATGT+TGG - Chr6:41242250-41242269 None:intergenic 30.0%
!! CATCCTCTAATTTTAATGCT+TGG + Chr6:41240435-41240454 MsG0680032439.01.T01:intron 30.0%
!! GCCGTTTTATTCTATTAACT+TGG + Chr6:41238284-41238303 MsG0680032439.01.T01:intron 30.0%
!! TAAAAAAGCACTCTTGCATA+AGG - Chr6:41242222-41242241 None:intergenic 30.0%
!!! AAAATCTCCACTTTTTATCG+TGG + Chr6:41240473-41240492 MsG0680032439.01.T01:intron 30.0%
!!! AAATCTCCACTTTTTATCGT+GGG + Chr6:41240474-41240493 MsG0680032439.01.T01:intron 30.0%
!!! AGTGCCATTTCCAATTTTAT+CGG - Chr6:41241678-41241697 None:intergenic 30.0%
AAAAAAATACGCTTGGCGTT+AGG + Chr6:41238919-41238938 MsG0680032439.01.T01:intron 35.0%
AAAAAGGAAACTACTTGACC+TGG + Chr6:41238582-41238601 MsG0680032439.01.T01:intron 35.0%
AAATGTTGGACGTTATGAGA+TGG + Chr6:41238996-41239015 MsG0680032439.01.T01:intron 35.0%
AAGCATAACTCGGTATATAG+GGG + Chr6:41240742-41240761 MsG0680032439.01.T01:intron 35.0%
AAGCCAATGCTCAATATTAC+CGG + Chr6:41239475-41239494 MsG0680032439.01.T01:five_prime_UTR 35.0%
AAGTCCAACCTTCTCAATAT+TGG + Chr6:41239990-41240009 MsG0680032439.01.T01:five_prime_UTR 35.0%
AAGTCTAGTCCAAAGATCAA+GGG - Chr6:41241905-41241924 None:intergenic 35.0%
ACAAGAATTGGGTTTCCATT+AGG + Chr6:41239604-41239623 MsG0680032439.01.T01:five_prime_UTR 35.0%
ACAATAGTGGTTGATCAATC+AGG + Chr6:41239528-41239547 MsG0680032439.01.T01:five_prime_UTR 35.0%
ACTGATGCTGATCTTTCAAT+AGG - Chr6:41238161-41238180 None:intergenic 35.0%
ATACATCCAAGAGAGTAAGT+TGG + Chr6:41243274-41243293 MsG0680032439.01.T01:CDS 35.0%
ATCATTCTCTCCAAATCACT+TGG + Chr6:41239254-41239273 MsG0680032439.01.T01:intron 35.0%
ATTCTTCCCACGATAAAAAG+TGG - Chr6:41240483-41240502 None:intergenic 35.0%
ATTTCCATTCTCCACAATAG+TGG + Chr6:41239515-41239534 MsG0680032439.01.T01:five_prime_UTR 35.0%
CAAGAACAAACGAAACATCA+TGG - Chr6:41239415-41239434 None:intergenic 35.0%
CAAGAATTGGGTTTCCATTA+GGG + Chr6:41239605-41239624 MsG0680032439.01.T01:five_prime_UTR 35.0%
CATAGTGGTGTGTGTATTTA+TGG - Chr6:41239288-41239307 None:intergenic 35.0%
CATGATGTTTCGTTTGTTCT+TGG + Chr6:41239413-41239432 MsG0680032439.01.T01:intron 35.0%
CCAACCAAGAGAAAGATAAA+TGG - Chr6:41239441-41239460 None:intergenic 35.0%
CCATTTATCTTTCTCTTGGT+TGG + Chr6:41239438-41239457 MsG0680032439.01.T01:intron 35.0%
CTAACTACATATGCTGAGTA+TGG + Chr6:41243231-41243250 MsG0680032439.01.T01:CDS 35.0%
GAACAATGAGGAATTCTATG+AGG - Chr6:41241824-41241843 None:intergenic 35.0%
GAATTCTATGAGGACCTTAA+AGG - Chr6:41241814-41241833 None:intergenic 35.0%
GGTTCCATTTATCTTTCTCT+TGG + Chr6:41239434-41239453 MsG0680032439.01.T01:intron 35.0%
GTGTCTACATAAGCATAACT+CGG + Chr6:41240732-41240751 MsG0680032439.01.T01:intron 35.0%
GTTGAATGGTATGATCCAAA+TGG + Chr6:41239958-41239977 MsG0680032439.01.T01:five_prime_UTR 35.0%
TACATCCAAGAGAGTAAGTT+GGG + Chr6:41243275-41243294 MsG0680032439.01.T01:CDS 35.0%
TACATTATATTGAAGGGAGC+TGG + Chr6:41239919-41239938 MsG0680032439.01.T01:five_prime_UTR 35.0%
TGATCTTGAATGTTAGGACT+TGG + Chr6:41240634-41240653 MsG0680032439.01.T01:intron 35.0%
TGATTGATCAACCACTATTG+TGG - Chr6:41239529-41239548 None:intergenic 35.0%
TGGATCATACCATTCAACAA+TGG - Chr6:41239956-41239975 None:intergenic 35.0%
TTATCAACACACCAGAAGAA+TGG + Chr6:41243346-41243365 MsG0680032439.01.T01:CDS 35.0%
TTGCCCGATAAAATTGGAAA+TGG + Chr6:41241671-41241690 MsG0680032439.01.T01:intron 35.0%
TTTCCGGTAATATTGAGCAT+TGG - Chr6:41239481-41239500 None:intergenic 35.0%
TTTGGAGAGAATGATGAGAA+AGG - Chr6:41239249-41239268 None:intergenic 35.0%
! AGAACCTATTCTCTTTAGAG+CGG - Chr6:41241772-41241791 None:intergenic 35.0%
! ATCCAGAAGCATGTGAATTT+CGG + Chr6:41238223-41238242 MsG0680032439.01.T01:intron 35.0%
! CTCTAAAGAGAATAGGTTCT+TGG + Chr6:41241772-41241791 MsG0680032439.01.T01:intron 35.0%
! TGTCAGATGTATGAGTTTTC+GGG + Chr6:41240026-41240045 MsG0680032439.01.T01:exon 35.0%
!! GGTAGCTCAACTTTTTCTTA+GGG + Chr6:41238747-41238766 MsG0680032439.01.T01:intron 35.0%
!! GGTGCTGTAGATTTTATCTT+TGG + Chr6:41241387-41241406 MsG0680032439.01.T01:CDS 35.0%
!! GTAGATTTTATCTTTGGTGC+AGG + Chr6:41241393-41241412 MsG0680032439.01.T01:CDS 35.0%
!! TCACTGCACCATTTTTAGAA+TGG - Chr6:41242354-41242373 None:intergenic 35.0%
!!! GTGCCATTTCCAATTTTATC+GGG - Chr6:41241677-41241696 None:intergenic 35.0%
!!! TGGGTACAGTATACTTTTTC+AGG + Chr6:41242700-41242719 MsG0680032439.01.T01:intron 35.0%
AAATTGTAGAACCGAGTGGT+TGG + Chr6:41242259-41242278 MsG0680032439.01.T01:CDS 40.0%
AACGTTGAAGCCCAAATCAT+TGG - Chr6:41238199-41238218 None:intergenic 40.0%
AAGTGTGGAACATCCAAAGT+TGG - Chr6:41241705-41241724 None:intergenic 40.0%
AATTGTAGAACCGAGTGGTT+GGG + Chr6:41242260-41242279 MsG0680032439.01.T01:CDS 40.0%
AGAACTTACTCACGACTATC+AGG - Chr6:41242297-41242316 None:intergenic 40.0%
AGAGTTGAGTTTGTGCATAG+TGG - Chr6:41239303-41239322 None:intergenic 40.0%
ATAACTCGGTATATAGGGGT+CGG + Chr6:41240746-41240765 MsG0680032439.01.T01:intron 40.0%
ATACTTACTTAGGGAGACCA+TGG + Chr6:41242193-41242212 MsG0680032439.01.T01:CDS 40.0%
ATCTTTCTCTTGGTTGGGTT+AGG + Chr6:41239444-41239463 MsG0680032439.01.T01:intron 40.0%
ATGAGCCCAAACGATACAAA+TGG + Chr6:41242132-41242151 MsG0680032439.01.T01:CDS 40.0%
CAAGTCTAGTCCAAAGATCA+AGG - Chr6:41241906-41241925 None:intergenic 40.0%
CAGCAATGTGTGTGAAGATA+TGG - Chr6:41241963-41241982 None:intergenic 40.0%
CATGTGAATTTCGGTGACTT+AGG + Chr6:41238232-41238251 MsG0680032439.01.T01:intron 40.0%
CTTAACCCAACTTACTCTCT+TGG - Chr6:41243283-41243302 None:intergenic 40.0%
CTTGTAGTAGTGTCTTCCAT+TGG - Chr6:41241352-41241371 None:intergenic 40.0%
GACACATTGTATGATGCCAA+TGG + Chr6:41241333-41241352 MsG0680032439.01.T01:CDS 40.0%
GCTCAATATTACCGGAAAGT+TGG + Chr6:41239483-41239502 MsG0680032439.01.T01:five_prime_UTR 40.0%
GGACGTTATGAGATGGATAA+AGG + Chr6:41239003-41239022 MsG0680032439.01.T01:intron 40.0%
GGGCAAATTTCCAAGTGATT+TGG - Chr6:41239267-41239286 None:intergenic 40.0%
GTGGTTGATCAATCAGGAAA+TGG + Chr6:41239534-41239553 MsG0680032439.01.T01:five_prime_UTR 40.0%
GTTGTCTGCCAATATTGAGA+AGG - Chr6:41240001-41240020 None:intergenic 40.0%
TCAACCACTATTGTGGAGAA+TGG - Chr6:41239522-41239541 None:intergenic 40.0%
TCCAAAATTGTAGAACCGAG+TGG + Chr6:41242255-41242274 MsG0680032439.01.T01:CDS 40.0%
TCTGCCAATATTGAGAAGGT+TGG - Chr6:41239997-41240016 None:intergenic 40.0%
TGTAGTCGATACTCGATACT+TGG + Chr6:41241724-41241743 MsG0680032439.01.T01:intron 40.0%
TTCTAATAGGGCAAGTCCAA+GGG + Chr6:41239694-41239713 MsG0680032439.01.T01:intron 40.0%
TTCTATGAGGACCTTAAAGG+TGG - Chr6:41241811-41241830 None:intergenic 40.0%
TTGGGTTTCCATTAGGGTTA+AGG + Chr6:41239611-41239630 MsG0680032439.01.T01:five_prime_UTR 40.0%
TTTCTAATAGGGCAAGTCCA+AGG + Chr6:41239693-41239712 MsG0680032439.01.T01:intron 40.0%
! AAAGTCAATAGGTTGGGGTT+AGG + Chr6:41238712-41238731 MsG0680032439.01.T01:intron 40.0%
! AAGTCAATAGGTTGGGGTTA+GGG + Chr6:41238713-41238732 MsG0680032439.01.T01:intron 40.0%
! ACCACTCGGTTCTACAATTT+TGG - Chr6:41242259-41242278 None:intergenic 40.0%
! AGGGATACTTGAGTTGCAAA+AGG + Chr6:41242577-41242596 MsG0680032439.01.T01:intron 40.0%
! GAGTATGGAAATTTTGGACC+TGG + Chr6:41243246-41243265 MsG0680032439.01.T01:CDS 40.0%
! TTTGATTTCACGTCTTGTCG+CGG + Chr6:41238122-41238141 MsG0680032439.01.T01:five_prime_UTR 40.0%
!! GCTCAACTTTTTCTTAGGGA+AGG + Chr6:41238751-41238770 MsG0680032439.01.T01:intron 40.0%
!! GGGTAGCTCAACTTTTTCTT+AGG + Chr6:41238746-41238765 MsG0680032439.01.T01:intron 40.0%
!!! GAGAAGGTTGGACTTTTTTC+AGG - Chr6:41239985-41240004 None:intergenic 40.0%
!!! GGACTTTTTTCAGGTCCATT+TGG - Chr6:41239976-41239995 None:intergenic 40.0%
!!! GGTGGTTTTATAACAGCACA+AGG + Chr6:41242105-41242124 MsG0680032439.01.T01:CDS 40.0%
AATGGCACTCCATCCAACTT+TGG + Chr6:41241689-41241708 MsG0680032439.01.T01:intron 45.0%
ACCACCCCCAATAACTGATA+TGG - Chr6:41242091-41242110 None:intergenic 45.0%
ACTCTTGCATAAGGTCTCCA+TGG - Chr6:41242213-41242232 None:intergenic 45.0%
AGGGTTTATTTGCATGCCCT+TGG - Chr6:41239713-41239732 None:intergenic 45.0%
ATGAGGACCTTAAAGGTGGA+AGG - Chr6:41241807-41241826 None:intergenic 45.0%
CACCGAAATTCACATGCTTC+TGG - Chr6:41238228-41238247 None:intergenic 45.0%
CCACTTACCTTCCACCTTTA+AGG + Chr6:41241797-41241816 MsG0680032439.01.T01:intron 45.0%
CCTTAAAGGTGGAAGGTAAG+TGG - Chr6:41241800-41241819 None:intergenic 45.0%
GAATCGAAAGTTACGTGCTG+TGG + Chr6:41241251-41241270 MsG0680032439.01.T01:CDS 45.0%
GATACCAGCCTTAACCCTAA+TGG - Chr6:41239622-41239641 None:intergenic 45.0%
GGAGTGTGAGGAACTTTCTT+TGG - Chr6:41241942-41241961 None:intergenic 45.0%
GGGTTAAGGCTGGTATCTAT+AGG + Chr6:41239625-41239644 MsG0680032439.01.T01:five_prime_UTR 45.0%
GTGGAACATCCAAAGTTGGA+TGG - Chr6:41241701-41241720 None:intergenic 45.0%
GTGTGAAGATATGGAGTGTG+AGG - Chr6:41241954-41241973 None:intergenic 45.0%
GTTTCCATTAGGGTTAAGGC+TGG + Chr6:41239615-41239634 MsG0680032439.01.T01:five_prime_UTR 45.0%
TAACTCGGTATATAGGGGTC+GGG + Chr6:41240747-41240766 MsG0680032439.01.T01:intron 45.0%
TCCATATCAGTTATTGGGGG+TGG + Chr6:41242087-41242106 MsG0680032439.01.T01:CDS 45.0%
TCGATACTTGGATCCGAAAG+TGG + Chr6:41241736-41241755 MsG0680032439.01.T01:intron 45.0%
TGCATCTGTTAGTGGTGACA+AGG + Chr6:41241275-41241294 MsG0680032439.01.T01:CDS 45.0%
! TGCAGGCCAATCTTTGTTTG+AGG + Chr6:41241410-41241429 MsG0680032439.01.T01:CDS 45.0%
!! GTTGCCGCTCTAAAGAGAAT+AGG + Chr6:41241765-41241784 MsG0680032439.01.T01:intron 45.0%
!! TCGAGTATCGACTACAAGTG+TGG - Chr6:41241720-41241739 None:intergenic 45.0%
!! TCTCTTTAGAGCGGCAACAA+TGG - Chr6:41241763-41241782 None:intergenic 45.0%
!! AAATGTTAATTATATAAATT+AGG + Chr6:41238642-41238661 MsG0680032439.01.T01:intron 5.0%
!! ATATATTAAATGTAATAAAT+TGG - Chr6:41240561-41240580 None:intergenic 5.0%
!! TATTATTATTATTATTATGA+AGG - Chr6:41242861-41242880 None:intergenic 5.0%
!!! CTTTTATAAAAATAAATATT+TGG + Chr6:41242828-41242847 MsG0680032439.01.T01:intron 5.0%
!!! TTTTATAATAAAAATGTTAT+TGG - Chr6:41239053-41239072 None:intergenic 5.0%
AACCGAGTGGTTGGGATTCA+TGG + Chr6:41242268-41242287 MsG0680032439.01.T01:CDS 50.0%
AACTCGGTATATAGGGGTCG+GGG + Chr6:41240748-41240767 MsG0680032439.01.T01:intron 50.0%
CGGCAACAATGGACCACTTT+CGG - Chr6:41241752-41241771 None:intergenic 50.0%
CTCCATGAATCCCAACCACT+CGG - Chr6:41242273-41242292 None:intergenic 50.0%
CTCTTGGATGTATCAGCACC+AGG - Chr6:41243267-41243286 None:intergenic 50.0%
TAGGCACGACTTGTGCTTGA+GGG - Chr6:41242465-41242484 None:intergenic 50.0%
TCCAAAGATCAAGGGCGAGA+AGG - Chr6:41241897-41241916 None:intergenic 50.0%
TTAGGCACGACTTGTGCTTG+AGG - Chr6:41242466-41242485 None:intergenic 50.0%
! GTGTTGTTCGTCGTCTTGTG+CGG + Chr6:41238097-41238116 MsG0680032439.01.T01:five_prime_UTR 50.0%
AGTTGAGCTACCCAACCCCT+AGG - Chr6:41238739-41238758 None:intergenic 55.0%
GCCTTCTCGCCCTTGATCTT+TGG + Chr6:41241893-41241912 MsG0680032439.01.T01:intron 55.0%
GCTGTGGCTGCATCTGTTAG+TGG + Chr6:41241267-41241286 MsG0680032439.01.T01:CDS 55.0%
! ATAGGTTGGGGTTAGGGCCT+AGG + Chr6:41238719-41238738 MsG0680032439.01.T01:intron 55.0%
! TAGGTTGGGGTTAGGGCCTA+GGG + Chr6:41238720-41238739 MsG0680032439.01.T01:intron 55.0%
AGGTTGGGGTTAGGGCCTAG+GGG + Chr6:41238721-41238740 MsG0680032439.01.T01:intron 60.0%
GGGGTTAGGGCCTAGGGGTT+GGG + Chr6:41238726-41238745 MsG0680032439.01.T01:intron 65.0%
TGGGGTTAGGGCCTAGGGGT+TGG + Chr6:41238725-41238744 MsG0680032439.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 41238087 41243389 41238087 ID=MsG0680032439.01;Name=MsG0680032439.01
Chr6 mRNA 41238087 41243389 41238087 ID=MsG0680032439.01.T01;Parent=MsG0680032439.01;Name=MsG0680032439.01.T01;_AED=0.29;_eAED=0.53;_QI=477|0|0|0.83|1|1|6|0|212
Chr6 exon 41238087 41238234 41238087 ID=MsG0680032439.01.T01:exon:22299;Parent=MsG0680032439.01.T01
Chr6 exon 41239466 41239646 41239466 ID=MsG0680032439.01.T01:exon:22300;Parent=MsG0680032439.01.T01
Chr6 exon 41239888 41240047 41239888 ID=MsG0680032439.01.T01:exon:22301;Parent=MsG0680032439.01.T01
Chr6 exon 41241225 41241461 41241225 ID=MsG0680032439.01.T01:exon:22302;Parent=MsG0680032439.01.T01
Chr6 exon 41242081 41242307 41242081 ID=MsG0680032439.01.T01:exon:22303;Parent=MsG0680032439.01.T01
Chr6 exon 41243227 41243389 41243227 ID=MsG0680032439.01.T01:exon:22304;Parent=MsG0680032439.01.T01
Chr6 five_prime_UTR 41238087 41238234 41238087 ID=MsG0680032439.01.T01:five_prime_utr;Parent=MsG0680032439.01.T01
Chr6 five_prime_UTR 41239466 41239646 41239466 ID=MsG0680032439.01.T01:five_prime_utr;Parent=MsG0680032439.01.T01
Chr6 five_prime_UTR 41239888 41240035 41239888 ID=MsG0680032439.01.T01:five_prime_utr;Parent=MsG0680032439.01.T01
Chr6 CDS 41240036 41240047 41240036 ID=MsG0680032439.01.T01:cds;Parent=MsG0680032439.01.T01
Chr6 CDS 41241225 41241461 41241225 ID=MsG0680032439.01.T01:cds;Parent=MsG0680032439.01.T01
Chr6 CDS 41242081 41242307 41242081 ID=MsG0680032439.01.T01:cds;Parent=MsG0680032439.01.T01
Chr6 CDS 41243227 41243389 41243227 ID=MsG0680032439.01.T01:cds;Parent=MsG0680032439.01.T01
Gene Sequence

>MsG0680032439.01.T01

ATGAGTTTTCGGAACTCATACAACAATCCTATAAATGGGAATCGAAAGTTACGTGCTGTGGCTGCATCTGTTAGTGGTGACAAGGTCCATTTTTTCAGAGTTGCTTTTTATGGCTATCAAGACACATTGTATGATGCCAATGGAAGACACTACTACAAGCTTTGTACTATACAAGGTGCTGTAGATTTTATCTTTGGTGCAGGCCAATCTTTGTTTGAGGTAAATAATTTCTCTGATAAGTACAAAGAGAGGTGTTCCATATCAGTTATTGGGGGTGGTTTTATAACAGCACAAGGTAGAATGAGCCCAAACGATACAAATGGATTTGTATTTAAAGATTGTCATATATTTGGAAATGCAAATACTTACTTAGGGAGACCATGGAGACCTTATGCAAGAGTGCTTTTTTACAAGACCAACATGTCCAAAATTGTAGAACCGAGTGGTTGGGATTCATGGAGTCCTGATAGTCGTGAGGATCTAACTACATATGCTGAGTATGGAAATTTTGGACCTGGTGCTGATACATCCAAGAGAGTAAGTTGGGTTAAGAAATTGGATTTAGCAACTATTGAAAACATGGCTAGTATGAACTTTATCAACACACCAGAAGAATGGATTAATTATCAACCATTCTAA
Protein sequence

>MsG0680032439.01.T01

MSFRNSYNNPINGNRKLRAVAASVSGDKVHFFRVAFYGYQDTLYDANGRHYYKLCTIQGAVDFIFGAGQSLFEVNNFSDKYKERCSISVIGGGFITAQGRMSPNDTNGFVFKDCHIFGNANTYLGRPWRPYARVLFYKTNMSKIVEPSGWDSWSPDSREDLTTYAEYGNFGPGADTSKRVSWVKKLDLATIENMASMNFINTPEEWINYQPF*