AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021744.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021744.01.T01 MTR_4g074290 86.957 368 15 3 1 336 1 367 0.0 637
MsG0480021744.01.T01 MTR_0009s0350 80.707 368 38 3 1 336 1 367 0.0 605
MsG0480021744.01.T01 MTR_0009s0340 80.707 368 38 3 1 336 1 367 0.0 605
MsG0480021744.01.T01 MTR_2g073390 77.717 368 49 2 1 336 1 367 0.0 586
MsG0480021744.01.T01 MTR_4g124740 43.849 317 129 5 58 336 40 345 2.14e-91 276
MsG0480021744.01.T01 MTR_8g102380 36.644 292 142 3 80 330 88 377 4.58e-62 202
MsG0480021744.01.T01 MTR_6g024165 38.535 314 152 5 58 333 27 337 1.30e-61 200
MsG0480021744.01.T01 MTR_6g088810 36.207 290 144 3 80 330 90 377 2.62e-61 201
MsG0480021744.01.T01 MTR_1g086540 36.000 350 167 6 37 333 2 347 3.37e-61 199
MsG0480021744.01.T01 MTR_5g012600 35.082 305 156 4 68 332 59 361 5.22e-56 186
MsG0480021744.01.T01 MTR_7g092780 33.445 299 158 3 72 330 90 387 2.88e-55 185
MsG0480021744.01.T01 MTR_7g102600 32.192 292 160 4 77 331 104 394 2.79e-52 177
MsG0480021744.01.T01 MTR_7g011530 33.446 296 144 6 69 319 3 290 4.73e-52 174
MsG0480021744.01.T01 MTR_5g095490 34.576 295 147 5 78 330 67 357 4.85e-52 176
MsG0480021744.01.T01 MTR_6g012800 31.438 299 152 5 71 324 5 295 1.13e-48 166
MsG0480021744.01.T01 MTR_8g102380 36.214 243 112 3 80 281 88 328 1.17e-45 158
MsG0480021744.01.T01 MTR_8g036225 32.432 296 169 4 70 334 31 326 3.77e-45 157
MsG0480021744.01.T01 MTR_1g033050 32.686 309 171 5 58 330 1 308 2.40e-44 154
MsG0480021744.01.T01 MTR_2g033970 31.935 310 176 4 55 330 38 346 2.55e-41 147
MsG0480021744.01.T01 MTR_6g042690 32.292 288 157 5 72 325 39 322 7.98e-40 143
MsG0480021744.01.T01 MTR_6g042660 31.597 288 161 8 78 334 43 325 6.57e-39 140
MsG0480021744.01.T01 MTR_2g436600 31.511 311 167 7 55 330 37 336 1.09e-38 140
MsG0480021744.01.T01 MTR_5g088300 33.564 289 169 4 70 336 35 322 1.41e-38 139
MsG0480021744.01.T01 MTR_5g083620 31.475 305 154 8 74 330 48 345 5.59e-38 139
MsG0480021744.01.T01 MTR_1g086190 30.565 301 160 5 74 330 257 552 2.62e-37 140
MsG0480021744.01.T01 MTR_5g088280 32.404 287 167 6 72 333 39 323 2.11e-36 134
MsG0480021744.01.T01 MTR_5g088290 31.879 298 159 6 72 336 48 334 2.55e-35 131
MsG0480021744.01.T01 MTR_4g051810 30.584 291 178 6 69 336 34 323 2.86e-34 128
MsG0480021744.01.T01 MTR_6g025590 40.217 184 68 2 58 202 35 215 7.68e-34 125
MsG0480021744.01.T01 MTR_8g088610 29.677 310 154 9 74 330 67 365 7.78e-34 128
MsG0480021744.01.T01 MTR_4g087970 28.261 368 194 10 12 330 160 506 2.43e-33 129
MsG0480021744.01.T01 MTR_4g025690 29.747 316 183 8 59 336 193 507 6.32e-33 128
MsG0480021744.01.T01 MTR_2g436040 30.851 282 147 8 65 303 224 500 1.14e-32 128
MsG0480021744.01.T01 MTR_8g023310 28.667 300 173 6 72 330 279 578 2.36e-32 127
MsG0480021744.01.T01 MTR_2g044660 29.236 301 165 9 72 327 327 624 1.89e-31 124
MsG0480021744.01.T01 MTR_7g050870 28.344 314 158 8 72 330 242 543 3.10e-31 124
MsG0480021744.01.T01 MTR_4g087980 28.000 350 194 10 25 330 170 505 3.37e-31 123
MsG0480021744.01.T01 MTR_7g050950 29.642 307 162 10 72 330 242 542 3.57e-31 123
MsG0480021744.01.T01 MTR_3g033690 27.907 344 183 11 36 330 188 515 3.71e-31 123
MsG0480021744.01.T01 MTR_7g050980 28.808 302 172 8 72 330 243 544 5.61e-31 123
MsG0480021744.01.T01 MTR_4g035980 30.503 318 166 10 62 330 217 528 7.30e-31 122
MsG0480021744.01.T01 MTR_3g091380 30.030 333 167 10 51 330 267 586 8.53e-31 122
MsG0480021744.01.T01 MTR_5g093970 28.620 297 182 6 69 336 40 335 9.28e-31 119
MsG0480021744.01.T01 MTR_3g008720 27.616 344 184 11 36 330 189 516 1.04e-30 122
MsG0480021744.01.T01 MTR_1g086210 28.188 298 163 5 74 325 255 547 1.98e-30 121
MsG0480021744.01.T01 MTR_7g053360 27.326 344 185 10 36 330 189 516 2.19e-30 121
MsG0480021744.01.T01 MTR_7g110560 29.221 308 162 9 71 330 239 538 2.27e-30 121
MsG0480021744.01.T01 MTR_7g108905 28.383 303 166 8 74 330 248 545 2.93e-30 120
MsG0480021744.01.T01 MTR_2g044810 27.778 306 171 7 70 330 223 523 6.51e-30 119
MsG0480021744.01.T01 MTR_3g008640 27.326 344 185 11 36 330 189 516 8.72e-30 119
MsG0480021744.01.T01 MTR_3g008700 27.035 344 186 11 36 330 189 516 1.23e-29 119
MsG0480021744.01.T01 MTR_1g083520 29.126 309 164 6 72 330 214 517 1.84e-29 118
MsG0480021744.01.T01 MTR_4g120290 25.610 328 178 6 10 295 215 518 2.58e-29 118
MsG0480021744.01.T01 MTR_4g120280 26.829 328 174 8 10 295 215 518 3.20e-29 118
MsG0480021744.01.T01 MTR_1g008140 29.129 333 171 10 51 330 276 596 3.76e-29 118
MsG0480021744.01.T01 MTR_2g436050 28.349 321 163 9 25 303 223 518 5.67e-29 117
MsG0480021744.01.T01 MTR_3g010780 25.763 295 183 5 72 330 269 563 6.16e-29 117
MsG0480021744.01.T01 MTR_7g112580 27.798 277 167 5 59 303 226 501 6.90e-29 117
MsG0480021744.01.T01 MTR_8g042900 27.119 295 179 6 72 330 276 570 7.00e-29 117
MsG0480021744.01.T01 MTR_7g110490 29.283 321 161 9 65 335 253 557 1.13e-28 116
MsG0480021744.01.T01 MTR_7g110510 29.283 321 161 9 65 335 253 557 1.13e-28 116
MsG0480021744.01.T01 MTR_7g110440 27.922 308 165 8 74 335 261 557 2.39e-28 115
MsG0480021744.01.T01 MTR_7g108875 27.832 309 168 8 71 330 251 553 4.67e-28 114
MsG0480021744.01.T01 MTR_2g044880 27.273 319 179 8 59 330 202 514 9.54e-28 113
MsG0480021744.01.T01 MTR_8g104645 28.159 277 148 6 72 303 61 331 2.80e-27 110
MsG0480021744.01.T01 MTR_4g025670 29.373 303 166 10 74 330 178 478 3.76e-27 111
MsG0480021744.01.T01 MTR_4g025730 25.073 343 197 10 33 330 171 498 4.19e-27 111
MsG0480021744.01.T01 MTR_7g108890 27.673 318 181 8 57 330 239 551 7.28e-27 111
MsG0480021744.01.T01 MTR_7g112590 26.316 304 177 8 72 330 271 572 8.22e-27 111
MsG0480021744.01.T01 MTR_1g083510 26.537 309 169 8 72 330 272 572 1.06e-26 110
MsG0480021744.01.T01 MTR_1g083470 29.225 284 139 10 72 303 257 530 2.60e-26 109
MsG0480021744.01.T01 MTR_1g083500 29.225 284 139 10 72 303 257 530 2.60e-26 109
MsG0480021744.01.T01 MTR_4g124550 24.665 373 228 10 1 330 220 582 3.04e-26 109
MsG0480021744.01.T01 MTR_4g005170 29.225 284 139 10 72 303 262 535 4.44e-26 109
MsG0480021744.01.T01 MTR_7g110420 29.710 276 148 7 74 303 261 536 6.50e-26 108
MsG0480021744.01.T01 MTR_1g083490 28.521 284 141 10 72 303 262 535 9.60e-26 108
MsG0480021744.01.T01 MTR_7g108900 29.936 314 156 12 71 330 246 549 1.12e-25 107
MsG0480021744.01.T01 MTR_4g124520 27.922 308 168 9 71 330 209 510 1.33e-25 107
MsG0480021744.01.T01 MTR_8g093460 26.230 305 166 7 80 330 241 540 1.37e-25 107
MsG0480021744.01.T01 MTR_8g104655 26.780 295 160 7 59 303 212 500 3.16e-25 106
MsG0480021744.01.T01 MTR_3g095920 27.419 310 161 10 78 330 251 553 4.77e-25 106
MsG0480021744.01.T01 MTR_4g005180 28.772 285 141 10 72 304 244 518 8.47e-25 105
MsG0480021744.01.T01 MTR_1g054880 27.974 311 169 8 69 330 243 547 1.67e-24 104
MsG0480021744.01.T01 MTR_8g023150 26.578 301 172 6 74 330 276 571 2.90e-23 100
MsG0480021744.01.T01 MTR_2g044810 30.415 217 134 6 126 330 243 454 4.36e-23 99.8
MsG0480021744.01.T01 MTR_0618s0020 30.159 189 115 4 126 303 5 187 2.19e-22 94.0
MsG0480021744.01.T01 MTR_1g088020 29.242 277 143 7 76 305 247 517 2.57e-22 98.2
MsG0480021744.01.T01 MTR_3g010770 28.571 217 138 5 126 330 353 564 1.90e-21 95.5
MsG0480021744.01.T01 MTR_2g105560 26.389 288 170 7 78 330 48 328 2.15e-21 93.6
MsG0480021744.01.T01 MTR_1g088225 26.821 302 168 7 76 330 247 542 2.77e-21 95.1
MsG0480021744.01.T01 MTR_0458s0030 29.954 217 135 5 126 330 92 303 1.51e-20 90.9
MsG0480021744.01.T01 MTR_1g088040 29.954 217 135 5 126 330 92 303 1.51e-20 90.9
MsG0480021744.01.T01 MTR_6g024200 37.410 139 83 3 198 333 142 279 1.55e-20 90.1
MsG0480021744.01.T01 MTR_8g042910 27.064 218 140 5 126 330 390 601 3.41e-19 89.0
MsG0480021744.01.T01 MTR_7g107180 24.916 297 178 9 72 330 7 296 3.52e-19 87.0
MsG0480021744.01.T01 MTR_8g104580 27.755 245 157 7 72 303 222 459 3.93e-19 88.6
MsG0480021744.01.T01 MTR_7g102580 34.286 140 71 3 59 198 35 153 6.72e-18 79.7
MsG0480021744.01.T01 MTR_7g110430 24.510 306 144 9 74 335 261 523 1.85e-16 80.5
MsG0480021744.01.T01 MTR_0408s0030 32.143 112 75 1 214 325 32 142 7.79e-14 68.6
MsG0480021744.01.T01 MTR_4g130790 37.736 106 62 3 127 228 110 215 4.61e-13 68.6
MsG0480021744.01.T01 MTR_6g006340 41.333 75 27 1 127 201 43 100 6.07e-12 62.4
MsG0480021744.01.T01 MTR_5g083590 25.792 221 133 8 72 268 7 220 6.52e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021744.01.T01 AT5G61680 50.418 359 145 2 8 334 5 362 2.70e-124 361
MsG0480021744.01.T01 AT1G69940 49.444 360 145 5 11 336 5 361 6.22e-123 358
MsG0480021744.01.T01 AT5G07410 49.444 360 145 5 11 336 5 361 2.96e-122 356
MsG0480021744.01.T01 AT5G07430 47.753 356 150 5 12 335 9 360 3.20e-115 338
MsG0480021744.01.T01 AT5G07420 45.810 358 159 4 10 334 4 359 1.40e-110 326
MsG0480021744.01.T01 AT5G19730 36.395 294 146 3 76 330 90 381 1.06e-62 204
MsG0480021744.01.T01 AT2G36710 35.690 297 153 3 71 330 90 385 4.68e-61 201
MsG0480021744.01.T01 AT2G21610 38.144 291 153 5 69 334 48 336 1.78e-56 187
MsG0480021744.01.T01 AT2G21610 38.144 291 153 5 69 334 53 341 2.57e-56 187
MsG0480021744.01.T01 AT1G05310 34.680 297 153 3 74 330 93 388 1.09e-55 186
MsG0480021744.01.T01 AT2G36700 33.333 294 161 3 71 330 41 333 1.03e-52 177
MsG0480021744.01.T01 AT5G47500 33.987 306 160 4 67 332 56 359 3.46e-52 176
MsG0480021744.01.T01 AT3G29090 30.032 313 163 5 67 331 2 306 2.26e-49 168
MsG0480021744.01.T01 AT5G55590 33.113 302 158 4 70 330 80 378 3.21e-46 161
MsG0480021744.01.T01 AT3G17060 30.547 311 181 4 54 330 27 336 9.12e-46 159
MsG0480021744.01.T01 AT5G18990 33.654 312 167 7 60 334 19 327 1.38e-40 145
MsG0480021744.01.T01 AT3G24130 33.444 302 161 7 72 334 34 334 6.53e-39 141
MsG0480021744.01.T01 AT5G49180 30.994 342 172 12 42 336 240 564 2.44e-38 144
MsG0480021744.01.T01 AT5G55590 32.411 253 127 4 70 281 80 329 9.77e-38 137
MsG0480021744.01.T01 AT3G05610 29.412 306 162 6 72 330 256 554 4.39e-36 138
MsG0480021744.01.T01 AT3G06830 29.836 305 159 6 74 330 260 557 5.95e-36 137
MsG0480021744.01.T01 AT5G27870 29.412 306 162 6 72 330 253 551 8.52e-36 137
MsG0480021744.01.T01 AT5G26810 29.936 314 174 8 67 335 26 338 3.47e-35 131
MsG0480021744.01.T01 AT2G47280 32.899 307 166 7 65 334 28 331 9.41e-35 130
MsG0480021744.01.T01 AT3G05620 29.553 291 162 7 77 330 246 530 7.51e-33 128
MsG0480021744.01.T01 AT1G11580 29.664 327 172 10 55 332 231 548 9.38e-32 125
MsG0480021744.01.T01 AT1G11580 29.664 327 172 10 55 332 252 569 1.01e-31 125
MsG0480021744.01.T01 AT2G19150 31.333 300 171 5 69 334 38 336 2.63e-31 120
MsG0480021744.01.T01 AT5G04960 29.801 302 174 7 72 336 258 558 5.07e-31 123
MsG0480021744.01.T01 AT3G49220 32.026 306 156 9 72 330 285 585 6.46e-31 123
MsG0480021744.01.T01 AT3G49220 32.248 307 154 10 72 330 330 630 7.43e-31 123
MsG0480021744.01.T01 AT4G02300 27.815 302 173 6 72 330 222 521 8.50e-31 122
MsG0480021744.01.T01 AT3G60730 28.013 307 165 7 74 330 208 508 2.99e-30 120
MsG0480021744.01.T01 AT5G53370 30.233 301 168 8 72 330 274 574 5.00e-30 120
MsG0480021744.01.T01 AT5G53370 30.233 301 168 8 72 330 310 610 5.21e-30 120
MsG0480021744.01.T01 AT3G43270 28.803 309 157 9 74 330 217 514 1.63e-29 118
MsG0480021744.01.T01 AT5G64640 28.025 314 165 8 72 329 289 597 1.92e-29 119
MsG0480021744.01.T01 AT5G09760 28.296 311 165 7 72 329 241 546 2.07e-29 118
MsG0480021744.01.T01 AT5G09760 28.296 311 165 7 72 329 267 572 2.56e-29 118
MsG0480021744.01.T01 AT3G59010 28.571 294 166 9 74 330 231 517 4.05e-29 117
MsG0480021744.01.T01 AT1G53840 25.936 374 217 11 2 330 218 576 4.50e-29 117
MsG0480021744.01.T01 AT2G45220 27.647 340 185 11 34 330 180 501 1.11e-28 116
MsG0480021744.01.T01 AT4G02320 28.197 305 164 7 74 330 210 507 1.47e-28 115
MsG0480021744.01.T01 AT3G10710 29.412 306 169 7 72 336 256 555 1.62e-28 116
MsG0480021744.01.T01 AT3G14300 27.139 339 199 9 1 303 601 927 2.29e-28 116
MsG0480021744.01.T01 AT2G26450 27.138 269 157 5 74 303 304 572 4.68e-28 115
MsG0480021744.01.T01 AT4G33220 27.273 319 179 8 59 330 79 391 4.99e-28 113
MsG0480021744.01.T01 AT4G15980 28.514 249 125 5 72 274 392 633 5.21e-28 115
MsG0480021744.01.T01 AT4G15980 28.514 249 125 5 72 274 402 643 5.75e-28 115
MsG0480021744.01.T01 AT4G33220 27.273 319 179 8 59 330 200 512 1.18e-27 113
MsG0480021744.01.T01 AT1G23200 28.367 349 180 13 25 330 222 543 1.27e-27 113
MsG0480021744.01.T01 AT4G02330 29.431 299 160 7 51 303 238 531 1.45e-27 113
MsG0480021744.01.T01 AT2G19150 32.780 241 127 5 69 275 38 277 4.10e-27 108
MsG0480021744.01.T01 AT5G20860 30.108 279 165 8 50 305 201 472 5.81e-27 111
MsG0480021744.01.T01 AT5G20860 27.976 336 178 11 50 330 201 527 1.49e-26 110
MsG0480021744.01.T01 AT1G11370 28.364 275 145 7 43 274 21 286 1.50e-26 107
MsG0480021744.01.T01 AT4G03930 27.331 311 181 8 63 330 205 513 3.79e-26 108
MsG0480021744.01.T01 AT4G00190 28.923 325 171 13 62 336 154 468 6.44e-26 108
MsG0480021744.01.T01 AT3G14310 27.063 303 170 6 74 330 284 581 1.40e-25 107
MsG0480021744.01.T01 AT3G10720 30.876 217 133 6 126 330 37 248 2.67e-25 102
MsG0480021744.01.T01 AT4G33230 26.756 299 175 8 74 330 299 595 2.83e-25 107
MsG0480021744.01.T01 AT1G53830 26.733 303 171 6 74 330 279 576 3.01e-25 106
MsG0480021744.01.T01 AT3G62170 25.962 312 163 6 74 330 279 577 3.20e-25 106
MsG0480021744.01.T01 AT1G02810 26.774 310 174 8 69 330 262 566 6.23e-25 105
MsG0480021744.01.T01 AT2G47030 25.574 305 173 5 74 330 279 577 7.64e-25 105
MsG0480021744.01.T01 AT2G43050 27.052 329 187 11 43 330 189 505 1.21e-24 104
MsG0480021744.01.T01 AT2G47040 26.316 304 172 6 74 330 286 584 1.70e-24 104
MsG0480021744.01.T01 AT1G11590 26.837 313 180 8 63 330 205 513 2.06e-24 103
MsG0480021744.01.T01 AT3G27980 26.490 302 175 7 72 330 189 486 2.64e-24 103
MsG0480021744.01.T01 AT3G10720 30.876 217 133 6 126 330 393 604 3.79e-24 103
MsG0480021744.01.T01 AT2G26440 27.305 282 153 7 69 305 235 509 3.80e-24 103
MsG0480021744.01.T01 AT2G47550 26.688 311 173 10 69 330 243 547 8.14e-24 102
MsG0480021744.01.T01 AT5G51490 29.085 306 164 10 74 330 224 525 8.44e-24 102
MsG0480021744.01.T01 AT5G51500 27.653 311 162 12 74 330 228 529 1.60e-21 95.9
MsG0480021744.01.T01 AT5G04970 29.032 217 137 5 126 330 398 609 1.67e-21 95.9
MsG0480021744.01.T01 AT3G47400 25.737 373 209 14 11 330 226 583 2.15e-21 95.5

Find 69 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGTTGCATTGAGAATTTC+TGG 0.162441 4:+63783308 MsG0480021744.01.T01:CDS
GGAATTTACTTGTCAAATTC+AGG 0.182966 4:-63783866 None:intergenic
AGACACATTAATTAGACTTT+TGG 0.265684 4:-63784176 None:intergenic
TCCGACACTTGCACGTCCTT+TGG 0.278720 4:-63784075 None:intergenic
GAATGATTCAAGGATCTAAA+TGG 0.313456 4:+63784141 MsG0480021744.01.T01:CDS
CCGACACTTGCACGTCCTTT+GGG 0.314398 4:-63784074 None:intergenic
CATAGTAGCAGCATTATTTA+CGG 0.336183 4:+63782693 MsG0480021744.01.T01:CDS
TTTGTGCATTGTGATGTTAC+TGG 0.342796 4:+63783728 MsG0480021744.01.T01:CDS
CATGGTGTTATCCCACCCTT+TGG 0.352671 4:-63783840 None:intergenic
GCGCTCTTTCCATCTGGTCT+TGG 0.370674 4:-63783275 None:intergenic
CCACCTGCGCTCTTTCCATC+TGG 0.379301 4:-63783281 None:intergenic
CGTCCTTTGGGATCTGACTT+TGG 0.391498 4:-63784062 None:intergenic
CATTGTGATGTTACTGGAAC+TGG 0.395140 4:+63783734 MsG0480021744.01.T01:CDS
TTTAAAGATTGCTTAATTCA+AGG 0.397068 4:+63783407 MsG0480021744.01.T01:CDS
AGCTGCTAACATCCTCATAT+CGG 0.423152 4:+63783126 MsG0480021744.01.T01:CDS
TTGAGAGCGCTTGGTGACGC+TGG 0.432263 4:+63783647 MsG0480021744.01.T01:CDS
ATCCACAGAACTTCATACTT+TGG 0.437722 4:+63784020 MsG0480021744.01.T01:intron
ATTACGCTTGGAATGATTCA+AGG 0.450777 4:+63784131 MsG0480021744.01.T01:CDS
GTTAAACCTTTCATTACGCT+TGG 0.452426 4:+63784119 MsG0480021744.01.T01:CDS
AATTACACGAATGGTGTTCC+CGG 0.454307 4:-63782932 None:intergenic
GAATTTACTTGTCAAATTCA+GGG 0.456824 4:-63783865 None:intergenic
GCCTCGGCAGTCACTAATGC+AGG 0.457535 4:-63782829 None:intergenic
TCATGGTTTAATACCAATGT+TGG 0.470537 4:+63782775 MsG0480021744.01.T01:CDS
GCATTAGTGACTGCCGAGGC+TGG 0.484498 4:+63782832 MsG0480021744.01.T01:CDS
CACACCACTCACTAAAATGC+GGG 0.489670 4:-63784219 None:intergenic
CGTGTAATTGTGAGCATTGG+TGG 0.495639 4:+63782946 MsG0480021744.01.T01:CDS
CTTGTCAAATTCAGGGTGCA+TGG 0.499942 4:-63783858 None:intergenic
AAAGTATACAAACCGATATG+AGG 0.505435 4:-63783138 None:intergenic
AAAAGTGAATTGAGAGCGCT+TGG 0.512329 4:+63783638 MsG0480021744.01.T01:CDS
GCCTGTGCTACTATCACTGT+TGG 0.513667 4:-63783671 None:intergenic
CAGTCACTAATGCAGGGTCA+AGG 0.520473 4:-63782822 None:intergenic
GCAGCATTATTTACGGTCAA+AGG 0.523213 4:+63782700 MsG0480021744.01.T01:CDS
TGAGAGCGCTTGGTGACGCT+GGG 0.524503 4:+63783648 MsG0480021744.01.T01:CDS
TCACTAAAATGCGGGGTGCA+CGG 0.534895 4:-63784211 None:intergenic
ATGGTGTTATCCCACCCTTT+GGG 0.537594 4:-63783839 None:intergenic
AAAGTAATGCAAGATGGTAG+TGG 0.544469 4:+63782868 MsG0480021744.01.T01:CDS
CTACTTTCTTAGCTAGAGCA+TGG 0.552896 4:+63783762 MsG0480021744.01.T01:CDS
ATCATTCCAAGCGTAATGAA+AGG 0.554490 4:-63784125 None:intergenic
CCCAAAGGACGTGCAAGTGT+CGG 0.560369 4:+63784074 MsG0480021744.01.T01:CDS
GCTATTAATCGCATCAGTGA+TGG 0.560809 4:-63782902 None:intergenic
GTTATTAAAGTAATGCAAGA+TGG 0.561198 4:+63782862 MsG0480021744.01.T01:CDS
AGTAATGTTGTTCATCCCAA+AGG 0.563704 4:+63783824 MsG0480021744.01.T01:CDS
GCGATTAATAGCATACCTAC+CGG 0.564109 4:+63782913 MsG0480021744.01.T01:CDS
TTGTTCTAATGGACCAACAT+TGG 0.565358 4:-63782788 None:intergenic
AATAACTTTAGCACCAGCCT+CGG 0.571464 4:-63782845 None:intergenic
ACGAGAAAATCAAAATTGAA+AGG 0.577139 4:+63782980 MsG0480021744.01.T01:CDS
GCCAACAGTGATAGTAGCAC+AGG 0.583672 4:+63783670 MsG0480021744.01.T01:CDS
TGTCATCACAAATTGTGTCC+TGG 0.585713 4:-63783370 None:intergenic
GTAATGTTGTTCATCCCAAA+GGG 0.586951 4:+63783825 MsG0480021744.01.T01:CDS
AATTCTGCACCAAGACCAGA+TGG 0.588569 4:+63783266 MsG0480021744.01.T01:CDS
CCAGATGGAAAGAGCGCAGG+TGG 0.592179 4:+63783281 MsG0480021744.01.T01:CDS
AGACCAGATGGAAAGAGCGC+AGG 0.592262 4:+63783278 MsG0480021744.01.T01:CDS
AGTCACTAATGCAGGGTCAA+GGG 0.594866 4:-63782821 None:intergenic
GATAGCAATATTAATAGCAT+AGG 0.598765 4:-63782671 None:intergenic
ATTCGTGTAATTGTGAGCAT+TGG 0.609756 4:+63782943 MsG0480021744.01.T01:CDS
AATGCTCACAATTACACGAA+TGG 0.611168 4:-63782941 None:intergenic
GTAATTGTGAGCATTGGTGG+TGG 0.617798 4:+63782949 MsG0480021744.01.T01:CDS
ATGTTGTTCATCCCAAAGGG+TGG 0.619020 4:+63783828 MsG0480021744.01.T01:CDS
TGTTGTTCATCCCAAAGGGT+GGG 0.630098 4:+63783829 MsG0480021744.01.T01:CDS
AAAGCAACTAAGTGAAGCAG+AGG 0.643865 4:+63784097 MsG0480021744.01.T01:CDS
ACACGAATGGTGTTCCCGGT+AGG 0.643878 4:-63782928 None:intergenic
CGATTAATAGCATACCTACC+GGG 0.648332 4:+63782914 MsG0480021744.01.T01:CDS
TTTGGAGAATATAAGAACAC+AGG 0.652388 4:+63784038 MsG0480021744.01.T01:CDS
TCACACCACTCACTAAAATG+CGG 0.667514 4:-63784220 None:intergenic
CCTCGGCAGTCACTAATGCA+GGG 0.680652 4:-63782828 None:intergenic
TTGCTTAATTCAAGGCACTG+TGG 0.685953 4:+63783415 MsG0480021744.01.T01:CDS
CCCTGCATTAGTGACTGCCG+AGG 0.696507 4:+63782828 MsG0480021744.01.T01:CDS
ACACCACTCACTAAAATGCG+GGG 0.699087 4:-63784218 None:intergenic
GGACCAAAGTCAGATCCCAA+AGG 0.709079 4:+63784059 MsG0480021744.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGTGTATATATATCATTTT+AGG + Chr4:63783964-63783983 MsG0480021744.01.T01:intron 15.0%
!!! TTTATAATTGCAAGTTTTTA+GGG + Chr4:63783345-63783364 MsG0480021744.01.T01:CDS 15.0%
!!! TTTTATAATTGCAAGTTTTT+AGG + Chr4:63783344-63783363 MsG0480021744.01.T01:CDS 15.0%
!! AAAAAACTCAATTAGATTCA+TGG + Chr4:63782758-63782777 MsG0480021744.01.T01:CDS 20.0%
!! AAATATGCCAAATTTAACAT+TGG + Chr4:63783037-63783056 MsG0480021744.01.T01:intron 20.0%
!! ATACACTAACATATTACTAA+TGG - Chr4:63783952-63783971 None:intergenic 20.0%
!! TTTAAAGATTGCTTAATTCA+AGG + Chr4:63783407-63783426 MsG0480021744.01.T01:CDS 20.0%
!!! AAAACTTTTGTTACATTGTA+TGG + Chr4:63783005-63783024 MsG0480021744.01.T01:intron 20.0%
!!! TAAATTTTGTATGAATTTGC+TGG + Chr4:63783238-63783257 MsG0480021744.01.T01:intron 20.0%
! ACGAGAAAATCAAAATTGAA+AGG + Chr4:63782980-63782999 MsG0480021744.01.T01:CDS 25.0%
! GAATTTACTTGTCAAATTCA+GGG - Chr4:63783868-63783887 None:intergenic 25.0%
! GATAGCAATATTAATAGCAT+AGG - Chr4:63782674-63782693 None:intergenic 25.0%
! GTTATTAAAGTAATGCAAGA+TGG + Chr4:63782862-63782881 MsG0480021744.01.T01:CDS 25.0%
!! AGACACATTAATTAGACTTT+TGG - Chr4:63784179-63784198 None:intergenic 25.0%
!! GAGTAAGCAAAGATAATTTT+AGG - Chr4:63783797-63783816 None:intergenic 25.0%
!!! GTACTTTTTCTTTGTTCTAA+TGG - Chr4:63782802-63782821 None:intergenic 25.0%
AAAGTATACAAACCGATATG+AGG - Chr4:63783141-63783160 None:intergenic 30.0%
AGAACTGCAAAGTTGAATTA+AGG - Chr4:63783890-63783909 None:intergenic 30.0%
AGTTCCACCAATGTTAAATT+TGG - Chr4:63783047-63783066 None:intergenic 30.0%
CATAGTAGCAGCATTATTTA+CGG + Chr4:63782693-63782712 MsG0480021744.01.T01:CDS 30.0%
GAATGATTCAAGGATCTAAA+TGG + Chr4:63784141-63784160 MsG0480021744.01.T01:CDS 30.0%
GGAATTTACTTGTCAAATTC+AGG - Chr4:63783869-63783888 None:intergenic 30.0%
GTTAAATTTGGCATATTTGC+TGG - Chr4:63783035-63783054 None:intergenic 30.0%
TATGCCAAATTTAACATTGG+TGG + Chr4:63783040-63783059 MsG0480021744.01.T01:intron 30.0%
TCATGGTTTAATACCAATGT+TGG + Chr4:63782775-63782794 MsG0480021744.01.T01:CDS 30.0%
TTTGGAGAATATAAGAACAC+AGG + Chr4:63784038-63784057 MsG0480021744.01.T01:CDS 30.0%
! CACATTAATTAGACTTTTGG+AGG - Chr4:63784176-63784195 None:intergenic 30.0%
!! ATTAATTAGACTTTTGGAGG+AGG - Chr4:63784173-63784192 None:intergenic 30.0%
!! TGGATTTCATTTTTGGAAGT+GGG + Chr4:63783435-63783454 MsG0480021744.01.T01:CDS 30.0%
!!! TCTAATTGAGTTTTTTCAGC+AGG - Chr4:63782754-63782773 None:intergenic 30.0%
AAAGTAATGCAAGATGGTAG+TGG + Chr4:63782868-63782887 MsG0480021744.01.T01:CDS 35.0%
AACTGCAAAACAATATGGCA+CGG + Chr4:63783063-63783082 MsG0480021744.01.T01:intron 35.0%
AATGCTCACAATTACACGAA+TGG - Chr4:63782944-63782963 None:intergenic 35.0%
AGTAATGTTGTTCATCCCAA+AGG + Chr4:63783824-63783843 MsG0480021744.01.T01:CDS 35.0%
ATCATTCCAAGCGTAATGAA+AGG - Chr4:63784128-63784147 None:intergenic 35.0%
ATCCACAGAACTTCATACTT+TGG + Chr4:63784020-63784039 MsG0480021744.01.T01:intron 35.0%
ATTACGCTTGGAATGATTCA+AGG + Chr4:63784131-63784150 MsG0480021744.01.T01:CDS 35.0%
ATTCGTGTAATTGTGAGCAT+TGG + Chr4:63782943-63782962 MsG0480021744.01.T01:CDS 35.0%
CATTATTAGCCGCTATTATC+CGG + Chr4:63783540-63783559 MsG0480021744.01.T01:intron 35.0%
GCATTGCAATTCTTGAATTC+CGG - Chr4:63783562-63783581 None:intergenic 35.0%
GCTAATAATGCATGATTGCT+CGG - Chr4:63783530-63783549 None:intergenic 35.0%
GTAATGTTGTTCATCCCAAA+GGG + Chr4:63783825-63783844 MsG0480021744.01.T01:CDS 35.0%
GTTAAACCTTTCATTACGCT+TGG + Chr4:63784119-63784138 MsG0480021744.01.T01:CDS 35.0%
TCTTGAATTCCGGATAATAG+CGG - Chr4:63783552-63783571 None:intergenic 35.0%
TTTGTGCATTGTGATGTTAC+TGG + Chr4:63783728-63783747 MsG0480021744.01.T01:CDS 35.0%
! TTGTTCTAATGGACCAACAT+TGG - Chr4:63782791-63782810 None:intergenic 35.0%
!! GTGGATTTCATTTTTGGAAG+TGG + Chr4:63783434-63783453 MsG0480021744.01.T01:CDS 35.0%
!!! TGAGTTTTTTCAGCAGGAAT+TGG - Chr4:63782748-63782767 None:intergenic 35.0%
AAAGCAACTAAGTGAAGCAG+AGG + Chr4:63784097-63784116 MsG0480021744.01.T01:CDS 40.0%
AATAACTTTAGCACCAGCCT+CGG - Chr4:63782848-63782867 None:intergenic 40.0%
AATTACACGAATGGTGTTCC+CGG - Chr4:63782935-63782954 None:intergenic 40.0%
AGCTGCTAACATCCTCATAT+CGG + Chr4:63783126-63783145 MsG0480021744.01.T01:CDS 40.0%
CATTGTGATGTTACTGGAAC+TGG + Chr4:63783734-63783753 MsG0480021744.01.T01:CDS 40.0%
CGATTAATAGCATACCTACC+GGG + Chr4:63782914-63782933 MsG0480021744.01.T01:CDS 40.0%
CTACTTTCTTAGCTAGAGCA+TGG + Chr4:63783762-63783781 MsG0480021744.01.T01:CDS 40.0%
CTCCAAAGTATGAAGTTCTG+TGG - Chr4:63784025-63784044 None:intergenic 40.0%
GCAGCATTATTTACGGTCAA+AGG + Chr4:63782700-63782719 MsG0480021744.01.T01:CDS 40.0%
GCAGTTGCATTGAGAATTTC+TGG + Chr4:63783308-63783327 MsG0480021744.01.T01:CDS 40.0%
GCGATTAATAGCATACCTAC+CGG + Chr4:63782913-63782932 MsG0480021744.01.T01:CDS 40.0%
GCTATTAATCGCATCAGTGA+TGG - Chr4:63782905-63782924 None:intergenic 40.0%
GGTGGAACTGCAAAACAATA+TGG + Chr4:63783058-63783077 MsG0480021744.01.T01:intron 40.0%
TGTCATCACAAATTGTGTCC+TGG - Chr4:63783373-63783392 None:intergenic 40.0%
! GGCACTGTGGATTTCATTTT+TGG + Chr4:63783428-63783447 MsG0480021744.01.T01:CDS 40.0%
!! AAAAGTGAATTGAGAGCGCT+TGG + Chr4:63783638-63783657 MsG0480021744.01.T01:CDS 40.0%
!! ATTAGACTTTTGGAGGAGGA+AGG - Chr4:63784169-63784188 None:intergenic 40.0%
!! TTGCTTAATTCAAGGCACTG+TGG + Chr4:63783415-63783434 MsG0480021744.01.T01:CDS 40.0%
!!! TTGCAAGTTTTTAGGGTTCC+AGG + Chr4:63783352-63783371 MsG0480021744.01.T01:CDS 40.0%
AATTCTGCACCAAGACCAGA+TGG + Chr4:63783266-63783285 MsG0480021744.01.T01:CDS 45.0%
ACACCACTCACTAAAATGCG+GGG - Chr4:63784221-63784240 None:intergenic 45.0%
AGTCACTAATGCAGGGTCAA+GGG - Chr4:63782824-63782843 None:intergenic 45.0%
ATGTTGTTCATCCCAAAGGG+TGG + Chr4:63783828-63783847 MsG0480021744.01.T01:CDS 45.0%
CTTGTCAAATTCAGGGTGCA+TGG - Chr4:63783861-63783880 None:intergenic 45.0%
TGTTGTTCATCCCAAAGGGT+GGG + Chr4:63783829-63783848 MsG0480021744.01.T01:CDS 45.0%
!! ATGGTGTTATCCCACCCTTT+GGG - Chr4:63783842-63783861 None:intergenic 45.0%
!! CGTGTAATTGTGAGCATTGG+TGG + Chr4:63782946-63782965 MsG0480021744.01.T01:CDS 45.0%
!! GTAATTGTGAGCATTGGTGG+TGG + Chr4:63782949-63782968 MsG0480021744.01.T01:CDS 45.0%
CAGTCACTAATGCAGGGTCA+AGG - Chr4:63782825-63782844 None:intergenic 50.0%
GCCAACAGTGATAGTAGCAC+AGG + Chr4:63783670-63783689 MsG0480021744.01.T01:CDS 50.0%
GGACCAAAGTCAGATCCCAA+AGG + Chr4:63784059-63784078 MsG0480021744.01.T01:CDS 50.0%
TCACTAAAATGCGGGGTGCA+CGG - Chr4:63784214-63784233 None:intergenic 50.0%
! GCCTGTGCTACTATCACTGT+TGG - Chr4:63783674-63783693 None:intergenic 50.0%
!! CATGGTGTTATCCCACCCTT+TGG - Chr4:63783843-63783862 None:intergenic 50.0%
!! CGTCCTTTGGGATCTGACTT+TGG - Chr4:63784065-63784084 None:intergenic 50.0%
ACACGAATGGTGTTCCCGGT+AGG - Chr4:63782931-63782950 None:intergenic 55.0%
CCCAAAGGACGTGCAAGTGT+CGG + Chr4:63784074-63784093 MsG0480021744.01.T01:CDS 55.0%
CCGACACTTGCACGTCCTTT+GGG - Chr4:63784077-63784096 None:intergenic 55.0%
CCTCGGCAGTCACTAATGCA+GGG - Chr4:63782831-63782850 None:intergenic 55.0%
GCGCTCTTTCCATCTGGTCT+TGG - Chr4:63783278-63783297 None:intergenic 55.0%
TCCGACACTTGCACGTCCTT+TGG - Chr4:63784078-63784097 None:intergenic 55.0%
! AGACCAGATGGAAAGAGCGC+AGG + Chr4:63783278-63783297 MsG0480021744.01.T01:CDS 55.0%
!! GCACCCCGCATTTTAGTGAG+TGG + Chr4:63784215-63784234 MsG0480021744.01.T01:three_prime_UTR 55.0%
CCACCTGCGCTCTTTCCATC+TGG - Chr4:63783284-63783303 None:intergenic 60.0%
CCCTGCATTAGTGACTGCCG+AGG + Chr4:63782828-63782847 MsG0480021744.01.T01:CDS 60.0%
GCATTAGTGACTGCCGAGGC+TGG + Chr4:63782832-63782851 MsG0480021744.01.T01:CDS 60.0%
GCCTCGGCAGTCACTAATGC+AGG - Chr4:63782832-63782851 None:intergenic 60.0%
! CCAGATGGAAAGAGCGCAGG+TGG + Chr4:63783281-63783300 MsG0480021744.01.T01:CDS 60.0%
!! TGAGAGCGCTTGGTGACGCT+GGG + Chr4:63783648-63783667 MsG0480021744.01.T01:CDS 60.0%
!! TTGAGAGCGCTTGGTGACGC+TGG + Chr4:63783647-63783666 MsG0480021744.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 63782652 63784240 63782652 ID=MsG0480021744.01;Name=MsG0480021744.01
Chr4 mRNA 63782652 63784240 63782652 ID=MsG0480021744.01.T01;Parent=MsG0480021744.01;Name=MsG0480021744.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0.5|0.6|1|1|1|5|53|336
Chr4 exon 63784028 63784240 63784028 ID=MsG0480021744.01.T01:exon:8446;Parent=MsG0480021744.01.T01
Chr4 exon 63783638 63783879 63783638 ID=MsG0480021744.01.T01:exon:8445;Parent=MsG0480021744.01.T01
Chr4 exon 63783266 63783472 63783266 ID=MsG0480021744.01.T01:exon:8444;Parent=MsG0480021744.01.T01
Chr4 exon 63783116 63783147 63783116 ID=MsG0480021744.01.T01:exon:8443;Parent=MsG0480021744.01.T01
Chr4 exon 63782652 63783021 63782652 ID=MsG0480021744.01.T01:exon:8442;Parent=MsG0480021744.01.T01
Chr4 CDS 63782652 63783021 63782652 ID=MsG0480021744.01.T01:cds;Parent=MsG0480021744.01.T01
Chr4 CDS 63783116 63783147 63783116 ID=MsG0480021744.01.T01:cds;Parent=MsG0480021744.01.T01
Chr4 CDS 63783266 63783472 63783266 ID=MsG0480021744.01.T01:cds;Parent=MsG0480021744.01.T01
Chr4 CDS 63783638 63783879 63783638 ID=MsG0480021744.01.T01:cds;Parent=MsG0480021744.01.T01
Chr4 CDS 63784028 63784187 63784028 ID=MsG0480021744.01.T01:cds;Parent=MsG0480021744.01.T01
Chr4 three_prime_UTR 63784188 63784240 63784188 ID=MsG0480021744.01.T01:three_prime_utr;Parent=MsG0480021744.01.T01
Gene Sequence

>MsG0480021744.01.T01

ATGGTCTCAAAAACAAGAACCTATGCTATTAATATTGCTATCATAGTAGCAGCATTATTTACGGTCAAAGGTGTATTATCAGATGACACAATTCCAATTCCTGCTGAAAAAACTCAATTAGATTCATGGTTTAATACCAATGTTGGTCCATTAGAACAAAGAAAAAGTACCCTTGACCCTGCATTAGTGACTGCCGAGGCTGGTGCTAAAGTTATTAAAGTAATGCAAGATGGTAGTGGTGATTTCAAAACCATCACTGATGCGATTAATAGCATACCTACCGGGAACACCATTCGTGTAATTGTGAGCATTGGTGGTGGAAATTATAACGAGAAAATCAAAATTGAAAGGACAAAACTTTTGTTACATTATTATTTTGTAGCTGCTAACATCCTCATATCGAATTCTGCACCAAGACCAGATGGAAAGAGCGCAGGTGGTCAAGCAGTTGCATTGAGAATTTCTGGTGACAAAGCAGCATTTTATAATTGCAAGTTTTTAGGGTTCCAGGACACAATTTGTGATGACAGACATAATCATTTTTTTAAAGATTGCTTAATTCAAGGCACTGTGGATTTCATTTTTGGAAGTGGGACGTCACTATATTTTAAAAGTGAATTGAGAGCGCTTGGTGACGCTGGGCCAACAGTGATAGTAGCACAGGCAAGAAAAAGTGCATCAGATAATGATTTATACTCATTTGTGCATTGTGATGTTACTGGAACTGGAAGTACTACTTTCTTAGCTAGAGCATGGATGACTTATCCTAAAATTATCTTTGCTTACTCAACTATGAGTAATGTTGTTCATCCCAAAGGGTGGGATAACACCATGCACCCTGAATTTGACAAAACTTCATACTTTGGAGAATATAAGAACACAGGACCAAAGTCAGATCCCAAAGGACGTGCAAGTGTCGGAAAGCAACTAAGTGAAGCAGAGGTTAAACCTTTCATTACGCTTGGAATGATTCAAGGATCTAAATGGCTCCTTCCTCCTCCAAAAGTCTAA

Protein sequence

>MsG0480021744.01.T01

MVSKTRTYAINIAIIVAALFTVKGVLSDDTIPIPAEKTQLDSWFNTNVGPLEQRKSTLDPALVTAEAGAKVIKVMQDGSGDFKTITDAINSIPTGNTIRVIVSIGGGNYNEKIKIERTKLLLHYYFVAANILISNSAPRPDGKSAGGQAVALRISGDKAAFYNCKFLGFQDTICDDRHNHFFKDCLIQGTVDFIFGSGTSLYFKSELRALGDAGPTVIVAQARKSASDNDLYSFVHCDVTGTGSTTFLARAWMTYPKIIFAYSTMSNVVHPKGWDNTMHPEFDKTSYFGEYKNTGPKSDPKGRASVGKQLSEAEVKPFITLGMIQGSKWLLPPPKV*