Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026919.01.T01 | XP_013443511.1 | 70.652 | 368 | 37 | 4 | 1 | 298 | 1 | 367 | 1.30E-167 | 479 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026919.01.T01 | B2VPR8 | 38.983 | 354 | 147 | 6 | 10 | 295 | 6 | 358 | 1.14E-73 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026919.01.T01 | A0A072TK22 | 70.652 | 368 | 37 | 4 | 1 | 298 | 1 | 367 | 6.22e-168 | 479 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026919.01.T01 | MTR_0009s0350 | 70.652 | 368 | 37 | 4 | 1 | 298 | 1 | 367 | 1.58e-171 | 479 |
| MsG0580026919.01.T01 | MTR_0009s0340 | 70.652 | 368 | 37 | 4 | 1 | 298 | 1 | 367 | 1.58e-171 | 479 |
| MsG0580026919.01.T01 | MTR_2g073390 | 57.609 | 368 | 85 | 8 | 1 | 298 | 1 | 367 | 1.36e-126 | 365 |
| MsG0580026919.01.T01 | MTR_4g074290 | 74.877 | 203 | 47 | 1 | 1 | 203 | 1 | 199 | 6.09e-99 | 295 |
| MsG0580026919.01.T01 | MTR_4g074290 | 88.732 | 142 | 16 | 0 | 157 | 298 | 226 | 367 | 1.11e-89 | 271 |
| MsG0580026919.01.T01 | MTR_4g124740 | 30.769 | 312 | 140 | 7 | 57 | 298 | 40 | 345 | 2.43e-42 | 149 |
| MsG0580026919.01.T01 | MTR_8g102380 | 38.053 | 113 | 69 | 1 | 180 | 292 | 266 | 377 | 2.18e-25 | 104 |
| MsG0580026919.01.T01 | MTR_6g088810 | 36.283 | 113 | 71 | 1 | 180 | 292 | 266 | 377 | 1.71e-23 | 99.4 |
| MsG0580026919.01.T01 | MTR_6g088810 | 34.058 | 138 | 80 | 2 | 79 | 209 | 90 | 223 | 4.45e-11 | 63.2 |
| MsG0580026919.01.T01 | MTR_5g095490 | 36.029 | 136 | 85 | 2 | 157 | 292 | 224 | 357 | 1.36e-22 | 96.3 |
| MsG0580026919.01.T01 | MTR_5g012600 | 25.000 | 304 | 151 | 7 | 67 | 294 | 59 | 361 | 1.51e-21 | 93.6 |
| MsG0580026919.01.T01 | MTR_7g102600 | 31.298 | 131 | 85 | 2 | 163 | 293 | 269 | 394 | 1.34e-19 | 88.6 |
| MsG0580026919.01.T01 | MTR_6g024200 | 35.537 | 121 | 76 | 2 | 176 | 295 | 160 | 279 | 1.63e-18 | 84.0 |
| MsG0580026919.01.T01 | MTR_1g086540 | 35.625 | 160 | 91 | 2 | 57 | 209 | 36 | 190 | 3.80e-18 | 84.0 |
| MsG0580026919.01.T01 | MTR_1g086540 | 33.898 | 118 | 77 | 1 | 178 | 295 | 231 | 347 | 2.27e-16 | 78.6 |
| MsG0580026919.01.T01 | MTR_6g024165 | 35.000 | 160 | 90 | 3 | 57 | 209 | 27 | 179 | 1.92e-17 | 81.6 |
| MsG0580026919.01.T01 | MTR_6g024165 | 35.043 | 117 | 74 | 2 | 180 | 295 | 222 | 337 | 7.11e-17 | 80.1 |
| MsG0580026919.01.T01 | MTR_7g092780 | 30.973 | 113 | 77 | 1 | 180 | 292 | 276 | 387 | 2.45e-17 | 82.0 |
| MsG0580026919.01.T01 | MTR_7g011530 | 37.500 | 104 | 63 | 1 | 180 | 281 | 187 | 290 | 1.26e-16 | 79.0 |
| MsG0580026919.01.T01 | MTR_7g011530 | 28.571 | 154 | 90 | 2 | 68 | 210 | 3 | 147 | 1.41e-11 | 64.3 |
| MsG0580026919.01.T01 | MTR_6g025590 | 42.982 | 114 | 58 | 2 | 57 | 163 | 35 | 148 | 1.00e-15 | 75.5 |
| MsG0580026919.01.T01 | MTR_6g012800 | 33.028 | 109 | 71 | 1 | 180 | 286 | 187 | 295 | 1.25e-15 | 76.3 |
| MsG0580026919.01.T01 | MTR_0408s0030 | 33.051 | 118 | 77 | 2 | 176 | 292 | 32 | 148 | 2.38e-15 | 72.4 |
| MsG0580026919.01.T01 | MTR_6g042690 | 30.496 | 141 | 93 | 3 | 157 | 296 | 196 | 332 | 6.10e-15 | 74.3 |
| MsG0580026919.01.T01 | MTR_8g036225 | 31.707 | 164 | 95 | 4 | 136 | 296 | 177 | 326 | 1.09e-14 | 73.6 |
| MsG0580026919.01.T01 | MTR_7g102570 | 39.241 | 79 | 46 | 2 | 180 | 258 | 22 | 98 | 1.79e-12 | 63.5 |
| MsG0580026919.01.T01 | MTR_2g033970 | 30.973 | 113 | 77 | 1 | 180 | 292 | 235 | 346 | 2.27e-12 | 67.0 |
| MsG0580026919.01.T01 | MTR_1g033050 | 29.508 | 122 | 85 | 1 | 171 | 292 | 188 | 308 | 3.56e-12 | 66.2 |
| MsG0580026919.01.T01 | MTR_6g042660 | 28.873 | 142 | 94 | 5 | 157 | 296 | 189 | 325 | 1.17e-11 | 64.7 |
| MsG0580026919.01.T01 | MTR_8g102380 | 40.625 | 64 | 37 | 1 | 180 | 243 | 266 | 328 | 4.94e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026919.01.T01 | AT5G61680 | 58.125 | 160 | 63 | 1 | 12 | 167 | 6 | 165 | 1.05e-56 | 187 |
| MsG0580026919.01.T01 | AT5G61680 | 45.000 | 140 | 76 | 1 | 157 | 296 | 224 | 362 | 3.23e-37 | 136 |
| MsG0580026919.01.T01 | AT1G69940 | 47.449 | 196 | 94 | 4 | 11 | 203 | 5 | 194 | 1.95e-49 | 168 |
| MsG0580026919.01.T01 | AT1G69940 | 47.727 | 132 | 68 | 1 | 167 | 298 | 231 | 361 | 5.60e-39 | 140 |
| MsG0580026919.01.T01 | AT5G07410 | 45.918 | 196 | 97 | 4 | 11 | 203 | 5 | 194 | 2.58e-48 | 165 |
| MsG0580026919.01.T01 | AT5G07410 | 47.727 | 132 | 68 | 1 | 167 | 298 | 231 | 361 | 5.05e-39 | 140 |
| MsG0580026919.01.T01 | AT5G07430 | 45.641 | 195 | 99 | 2 | 10 | 203 | 6 | 194 | 2.69e-47 | 162 |
| MsG0580026919.01.T01 | AT5G07430 | 46.667 | 135 | 71 | 1 | 163 | 297 | 227 | 360 | 1.26e-40 | 145 |
| MsG0580026919.01.T01 | AT5G07420 | 46.114 | 193 | 96 | 3 | 12 | 203 | 9 | 194 | 6.61e-46 | 159 |
| MsG0580026919.01.T01 | AT5G07420 | 44.776 | 134 | 73 | 1 | 163 | 296 | 227 | 359 | 1.10e-36 | 134 |
| MsG0580026919.01.T01 | AT2G21610 | 36.957 | 138 | 85 | 2 | 159 | 296 | 201 | 336 | 1.82e-24 | 101 |
| MsG0580026919.01.T01 | AT2G21610 | 36.957 | 138 | 85 | 2 | 159 | 296 | 206 | 341 | 1.88e-24 | 101 |
| MsG0580026919.01.T01 | AT5G19730 | 37.168 | 113 | 70 | 1 | 180 | 292 | 270 | 381 | 2.86e-23 | 98.6 |
| MsG0580026919.01.T01 | AT1G05310 | 37.168 | 113 | 70 | 1 | 180 | 292 | 277 | 388 | 6.46e-21 | 92.0 |
| MsG0580026919.01.T01 | AT2G36710 | 36.283 | 113 | 71 | 1 | 180 | 292 | 274 | 385 | 3.90e-20 | 90.1 |
| MsG0580026919.01.T01 | AT3G29090 | 22.295 | 305 | 160 | 6 | 66 | 293 | 2 | 306 | 2.15e-19 | 87.0 |
| MsG0580026919.01.T01 | AT2G36700 | 33.333 | 114 | 75 | 1 | 179 | 292 | 221 | 333 | 3.28e-18 | 84.0 |
| MsG0580026919.01.T01 | AT5G55590 | 37.168 | 113 | 70 | 1 | 180 | 292 | 267 | 378 | 2.42e-17 | 82.0 |
| MsG0580026919.01.T01 | AT5G18990 | 33.858 | 127 | 80 | 2 | 173 | 296 | 202 | 327 | 5.19e-16 | 77.4 |
| MsG0580026919.01.T01 | AT3G24130 | 32.773 | 119 | 77 | 2 | 180 | 296 | 217 | 334 | 2.58e-13 | 69.7 |
| MsG0580026919.01.T01 | AT3G06830 | 32.530 | 166 | 88 | 6 | 73 | 232 | 260 | 407 | 2.98e-13 | 70.5 |
| MsG0580026919.01.T01 | AT5G64640 | 25.197 | 254 | 143 | 11 | 71 | 291 | 358 | 597 | 3.53e-13 | 70.1 |
| MsG0580026919.01.T01 | AT3G17060 | 30.973 | 113 | 77 | 1 | 180 | 292 | 225 | 336 | 7.17e-13 | 68.6 |
| MsG0580026919.01.T01 | AT5G47500 | 31.897 | 116 | 77 | 2 | 180 | 294 | 245 | 359 | 2.97e-12 | 67.0 |
| MsG0580026919.01.T01 | AT2G47280 | 33.333 | 117 | 77 | 1 | 180 | 296 | 216 | 331 | 1.66e-11 | 64.3 |
| MsG0580026919.01.T01 | AT5G09760 | 29.457 | 129 | 69 | 3 | 180 | 291 | 423 | 546 | 8.24e-11 | 62.8 |
| MsG0580026919.01.T01 | AT5G09760 | 29.457 | 129 | 69 | 3 | 180 | 291 | 449 | 572 | 9.06e-11 | 62.8 |
Find 79 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACCTTTCGTTACATTATA+TGG | 0.094315 | 5:+48207232 | MsG0580026919.01.T01:CDS |
| CGTTAAATTTGGCATATTTC+CGG | 0.194474 | 5:-48207260 | None:intergenic |
| GTTCCACCAAACGTTAAATT+TGG | 0.197798 | 5:-48207271 | None:intergenic |
| GTTACGTACTTGTCAAATTC+AGG | 0.226236 | 5:-48208172 | None:intergenic |
| TGAGTAAGCATAGATAATTT+TGG | 0.240656 | 5:-48208101 | None:intergenic |
| AGCAACATTAATTAGACTTT+TGG | 0.242103 | 5:-48208900 | None:intergenic |
| TGCGACACTTGCACGTCCTT+TGG | 0.258259 | 5:-48208799 | None:intergenic |
| AATCACACGTACGGTGTTTC+CGG | 0.304840 | 5:-48207158 | None:intergenic |
| GAATGATTCAAGCATCTAAA+TGG | 0.319252 | 5:+48208865 | MsG0580026919.01.T01:CDS |
| AACCTTTCGTTACATTATAT+GGG | 0.322273 | 5:+48207233 | MsG0580026919.01.T01:CDS |
| GCGACACTTGCACGTCCTTT+GGG | 0.328370 | 5:-48208798 | None:intergenic |
| GTTAAATTTGGCATATTTCC+GGG | 0.335383 | 5:-48207259 | None:intergenic |
| TTTGTGCATTGTGATATTAC+TGG | 0.337660 | 5:+48208034 | MsG0580026919.01.T01:CDS |
| ACAGAGCCCAAGTAGATTCA+TGG | 0.357385 | 5:+48206984 | MsG0580026919.01.T01:CDS |
| AATATGCCAAATTTAACGTT+TGG | 0.374023 | 5:+48207265 | MsG0580026919.01.T01:CDS |
| TGCTACATTGATTGTTGAAT+CGG | 0.374789 | 5:+48207321 | MsG0580026919.01.T01:CDS |
| CATGGCGTTATCCCACCCTT+TGG | 0.375545 | 5:-48208146 | None:intergenic |
| CGTCCTTTGGGATCTGACTT+TGG | 0.391498 | 5:-48208786 | None:intergenic |
| TATCATAGTAGCATTATTCA+TGG | 0.394991 | 5:+48206919 | MsG0580026919.01.T01:CDS |
| CATTGTGATATTACTGGAAC+TGG | 0.404041 | 5:+48208040 | MsG0580026919.01.T01:CDS |
| TTAAGAGCTCTTGGTGATGC+TGG | 0.404113 | 5:+48207953 | MsG0580026919.01.T01:CDS |
| ATGGCGTTATCCCACCCTTT+GGG | 0.415880 | 5:-48208145 | None:intergenic |
| TATTAAACCATGAATCTACT+TGG | 0.416390 | 5:-48206991 | None:intergenic |
| GGTGGAACTGCAAAACAATA+TGG | 0.420706 | 5:+48207286 | MsG0580026919.01.T01:CDS |
| TGGGCTCTGTTAGCAGGAAC+TGG | 0.421901 | 5:-48206971 | None:intergenic |
| TATATTGTTAACATTAAGTC+AGG | 0.429146 | 5:+48209004 | MsG0580026919.01.T01:three_prime_UTR |
| ATGCCAAATTTAACGTTTGG+TGG | 0.436559 | 5:+48207268 | MsG0580026919.01.T01:CDS |
| ATCCACAGAACTTCATACTT+TGG | 0.444645 | 5:+48208744 | MsG0580026919.01.T01:intron |
| GAAGTACTACTTTCTTAGCT+AGG | 0.445356 | 5:+48208062 | MsG0580026919.01.T01:CDS |
| AAAAGTGAATTAAGAGCTCT+TGG | 0.451804 | 5:+48207944 | MsG0580026919.01.T01:CDS |
| GTTAAACCTTTCATTACGCT+TGG | 0.452426 | 5:+48208843 | MsG0580026919.01.T01:CDS |
| GCATTGGTGACTGCAGAGGC+TGG | 0.466477 | 5:+48207058 | MsG0580026919.01.T01:CDS |
| ACATTAAGTCAGGTCCTTTG+AGG | 0.469857 | 5:+48209014 | MsG0580026919.01.T01:three_prime_UTR |
| GATAGCAACATTAATCATAT+AGG | 0.470350 | 5:-48206900 | None:intergenic |
| GCCTCTGCAGTCACCAATGC+AGG | 0.483502 | 5:-48207055 | None:intergenic |
| GCTATTAATTGCAGCGGTGA+TGG | 0.483899 | 5:-48207128 | None:intergenic |
| TCTACTTGGGCTCTGTTAGC+AGG | 0.491556 | 5:-48206977 | None:intergenic |
| CAGTCACCAATGCAGGATCA+AGG | 0.498712 | 5:-48207048 | None:intergenic |
| ATTTCAATATATTTCCTCAA+AGG | 0.523961 | 5:-48209028 | None:intergenic |
| CTACTTTCTTAGCTAGGGCA+TGG | 0.526494 | 5:+48208068 | MsG0580026919.01.T01:CDS |
| GCTTGTGCTACTATCACTGT+TGG | 0.532085 | 5:-48207977 | None:intergenic |
| TAAGAGCTCTTGGTGATGCT+GGG | 0.537579 | 5:+48207954 | MsG0580026919.01.T01:CDS |
| AAGTACTACTTTCTTAGCTA+GGG | 0.538113 | 5:+48208063 | MsG0580026919.01.T01:CDS |
| TTCATGGTTTAATACGAATG+TGG | 0.538620 | 5:+48207000 | MsG0580026919.01.T01:CDS |
| TTACGTACTTGTCAAATTCA+GGG | 0.539416 | 5:-48208171 | None:intergenic |
| GCAATTAATAGCATATCTAC+CGG | 0.542630 | 5:+48207139 | MsG0580026919.01.T01:CDS |
| AAAGTAATGCAAGATGGTAG+TGG | 0.544469 | 5:+48207094 | MsG0580026919.01.T01:CDS |
| ATCATTCCAAGCGTAATGAA+AGG | 0.554490 | 5:-48208849 | None:intergenic |
| ACCTTTCGTTACATTATATG+GGG | 0.557010 | 5:+48207234 | MsG0580026919.01.T01:CDS |
| TCATGGTTTAATACGAATGT+GGG | 0.558953 | 5:+48207001 | MsG0580026919.01.T01:CDS |
| GTTATTAAAGTAATGCAAGA+TGG | 0.561198 | 5:+48207088 | MsG0580026919.01.T01:CDS |
| CTTGTCAAATTCAGGGTGCA+TGG | 0.564970 | 5:-48208164 | None:intergenic |
| TGTTGAATCGGATTATTTCG+TGG | 0.565426 | 5:+48207333 | MsG0580026919.01.T01:CDS |
| GGCTGCTAATATCCTCGTAT+CGG | 0.569341 | 5:+48207354 | MsG0580026919.01.T01:CDS |
| ATGAGAAAATCAAAATTGAA+AGG | 0.570108 | 5:+48207206 | MsG0580026919.01.T01:CDS |
| TCCTGCATTGGTGACTGCAG+AGG | 0.575652 | 5:+48207054 | MsG0580026919.01.T01:CDS |
| CCCTTTGGGATCAACAACAT+TGG | 0.582477 | 5:-48208131 | None:intergenic |
| ATTAAACCATGAATCTACTT+GGG | 0.585542 | 5:-48206990 | None:intergenic |
| GACACCACTCAATAGAATGT+GGG | 0.589349 | 5:-48208943 | None:intergenic |
| GTTACATTATATGGGGCACC+CGG | 0.598949 | 5:+48207241 | MsG0580026919.01.T01:CDS |
| GCACCCCACATTCTATTGAG+TGG | 0.601287 | 5:+48208939 | MsG0580026919.01.T01:three_prime_UTR |
| AGTCACCAATGCAGGATCAA+GGG | 0.606631 | 5:-48207047 | None:intergenic |
| CCAATGTTGTTGATCCCAAA+GGG | 0.606936 | 5:+48208131 | MsG0580026919.01.T01:CDS |
| GCCCCATATAATGTAACGAA+AGG | 0.607492 | 5:-48207235 | None:intergenic |
| AGACACCACTCAATAGAATG+TGG | 0.607512 | 5:-48208944 | None:intergenic |
| AAGTACCCTTGATCCTGCAT+TGG | 0.608555 | 5:+48207042 | MsG0580026919.01.T01:CDS |
| ACCAATGTTGTTGATCCCAA+AGG | 0.616170 | 5:+48208130 | MsG0580026919.01.T01:CDS |
| GTGATTGTGAACATTGGTGG+TGG | 0.620831 | 5:+48207175 | MsG0580026919.01.T01:CDS |
| CGTGTGATTGTGAACATTGG+TGG | 0.622936 | 5:+48207172 | MsG0580026919.01.T01:CDS |
| AATGTTCACAATCACACGTA+CGG | 0.623034 | 5:-48207167 | None:intergenic |
| ATGTTGTTGATCCCAAAGGG+TGG | 0.623410 | 5:+48208134 | MsG0580026919.01.T01:CDS |
| TGTTGTTGATCCCAAAGGGT+GGG | 0.630098 | 5:+48208135 | MsG0580026919.01.T01:CDS |
| AAAGCAACTAAGTGAAGCAG+AGG | 0.643865 | 5:+48208821 | MsG0580026919.01.T01:CDS |
| AGATATGCTATTAATTGCAG+CGG | 0.664928 | 5:-48207134 | None:intergenic |
| GTACGTGTGATTGTGAACAT+TGG | 0.671149 | 5:+48207169 | MsG0580026919.01.T01:CDS |
| TTTGGAGAATATCAGAACAC+AGG | 0.672876 | 5:+48208762 | MsG0580026919.01.T01:CDS |
| ACACCACTCAATAGAATGTG+GGG | 0.674076 | 5:-48208942 | None:intergenic |
| GGACCAAAGTCAGATCCCAA+AGG | 0.709079 | 5:+48208783 | MsG0580026919.01.T01:CDS |
| AAAGTATACTAACCGATACG+AGG | 0.709632 | 5:-48207366 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAAAAACAAGTAAAA+TGG | + | Chr5:48206862-48206881 | MsG0580026919.01.T01:exon | 10.0% |
| !! | AAAATTTATATGTAAATAGA+AGG | - | Chr5:48208628-48208647 | None:intergenic | 10.0% |
| !!! | AATTTTTCTTTAATTAATTG+AGG | + | Chr5:48207903-48207922 | MsG0580026919.01.T01:intron | 10.0% |
| !! | ACTATATACAATTAATATGT+AGG | + | Chr5:48208228-48208247 | MsG0580026919.01.T01:intron | 15.0% |
| !! | GAAATTTCATAATATTTGTA+GGG | + | Chr5:48208410-48208429 | MsG0580026919.01.T01:intron | 15.0% |
| !! | TATCACAATTATTATGAATT+AGG | - | Chr5:48208471-48208490 | None:intergenic | 15.0% |
| !! | TGAAATTTCATAATATTTGT+AGG | + | Chr5:48208409-48208428 | MsG0580026919.01.T01:intron | 15.0% |
| !! | TTTATAATTGTAAGTTCTTT+GGG | + | Chr5:48207525-48207544 | MsG0580026919.01.T01:intron | 15.0% |
| !!! | AATTGTTGATTAATAAATGA+TGG | + | Chr5:48208720-48208739 | MsG0580026919.01.T01:intron | 15.0% |
| !!! | GAATTGTAAACAAATTTTTT+TGG | - | Chr5:48207834-48207853 | None:intergenic | 15.0% |
| !!! | TTTTATAATTGTAAGTTCTT+TGG | + | Chr5:48207524-48207543 | MsG0580026919.01.T01:intron | 15.0% |
| !! | AAAATATGACCGTAAAAAAT+TGG | + | Chr5:48207425-48207444 | MsG0580026919.01.T01:intron | 20.0% |
| !! | ATGAGAAAATCAAAATTGAA+AGG | + | Chr5:48207206-48207225 | MsG0580026919.01.T01:CDS | 20.0% |
| !! | ATTTCAATATATTTCCTCAA+AGG | - | Chr5:48209031-48209050 | None:intergenic | 20.0% |
| !! | ATTTGTTTACAATTCAAGAA+TGG | + | Chr5:48207839-48207858 | MsG0580026919.01.T01:intron | 20.0% |
| !! | TATATTGTTAACATTAAGTC+AGG | + | Chr5:48209004-48209023 | MsG0580026919.01.T01:three_prime_UTR | 20.0% |
| !! | TATGAATAATGAATCATACA+TGG | + | Chr5:48207779-48207798 | MsG0580026919.01.T01:intron | 20.0% |
| !! | TGATACTAACATATTACTAA+TGG | - | Chr5:48208259-48208278 | None:intergenic | 20.0% |
| !! | TTATATGTAAATAGAAGGTA+AGG | - | Chr5:48208623-48208642 | None:intergenic | 20.0% |
| !! | TTTAAAGATTGTGTAATTCA+AGG | + | Chr5:48207587-48207606 | MsG0580026919.01.T01:intron | 20.0% |
| !!! | AAAAAAAAGTTTTCAATCAC+CGG | + | Chr5:48207698-48207717 | MsG0580026919.01.T01:intron | 20.0% |
| !!! | AATTCTGTACCAATTTTTTA+CGG | - | Chr5:48207437-48207456 | None:intergenic | 20.0% |
| !!! | TTGTAAACAAATTTTTTTGG+TGG | - | Chr5:48207831-48207850 | None:intergenic | 20.0% |
| ! | AAACCTTTCGTTACATTATA+TGG | + | Chr5:48207232-48207251 | MsG0580026919.01.T01:CDS | 25.0% |
| ! | AACCTTTCGTTACATTATAT+GGG | + | Chr5:48207233-48207252 | MsG0580026919.01.T01:CDS | 25.0% |
| ! | AATAATGAATCATACATGGA+AGG | + | Chr5:48207783-48207802 | MsG0580026919.01.T01:intron | 25.0% |
| ! | AATATGCCAAATTTAACGTT+TGG | + | Chr5:48207265-48207284 | MsG0580026919.01.T01:CDS | 25.0% |
| ! | ATTAAACCATGAATCTACTT+GGG | - | Chr5:48206993-48207012 | None:intergenic | 25.0% |
| ! | CTGTAAAAAATTTATGCAGT+TGG | + | Chr5:48208965-48208984 | MsG0580026919.01.T01:three_prime_UTR | 25.0% |
| ! | GATAGCAACATTAATCATAT+AGG | - | Chr5:48206903-48206922 | None:intergenic | 25.0% |
| ! | GTTATTAAAGTAATGCAAGA+TGG | + | Chr5:48207088-48207107 | MsG0580026919.01.T01:CDS | 25.0% |
| ! | TATCATAGTAGCATTATTCA+TGG | + | Chr5:48206919-48206938 | MsG0580026919.01.T01:CDS | 25.0% |
| ! | TATTAAACCATGAATCTACT+TGG | - | Chr5:48206994-48207013 | None:intergenic | 25.0% |
| ! | TTCATTTCTTACAGACAATT+TGG | - | Chr5:48207406-48207425 | None:intergenic | 25.0% |
| !! | AACATTAATTAGACTTTTGG+AGG | - | Chr5:48208900-48208919 | None:intergenic | 25.0% |
| !! | AGCAACATTAATTAGACTTT+TGG | - | Chr5:48208903-48208922 | None:intergenic | 25.0% |
| !! | ATGCATCTAGTTTAAAACAT+TGG | + | Chr5:48207864-48207883 | MsG0580026919.01.T01:intron | 25.0% |
| !! | GAGTAAGCATAGATAATTTT+GGG | - | Chr5:48208103-48208122 | None:intergenic | 25.0% |
| !! | TGAGTAAGCATAGATAATTT+TGG | - | Chr5:48208104-48208123 | None:intergenic | 25.0% |
| !!! | AGATTGTTATTTTTAGTCCA+TGG | - | Chr5:48208336-48208355 | None:intergenic | 25.0% |
| !!! | ATTAGTTTTGTCATCCATAA+AGG | + | Chr5:48208540-48208559 | MsG0580026919.01.T01:intron | 25.0% |
| !!! | CTTAACATTTGTTGTATTCA+AGG | + | Chr5:48207666-48207685 | MsG0580026919.01.T01:intron | 25.0% |
| !!! | GTACTTTTTCTTTGTTCTAA+TGG | - | Chr5:48207028-48207047 | None:intergenic | 25.0% |
| !!! | TAAACAAATTTTTTTGGTGG+TGG | - | Chr5:48207828-48207847 | None:intergenic | 25.0% |
| AAAAGTGAATTAAGAGCTCT+TGG | + | Chr5:48207944-48207963 | MsG0580026919.01.T01:CDS | 30.0% | |
| AAGTACTACTTTCTTAGCTA+GGG | + | Chr5:48208063-48208082 | MsG0580026919.01.T01:CDS | 30.0% | |
| ACCTTTCGTTACATTATATG+GGG | + | Chr5:48207234-48207253 | MsG0580026919.01.T01:CDS | 30.0% | |
| AGATATGCTATTAATTGCAG+CGG | - | Chr5:48207137-48207156 | None:intergenic | 30.0% | |
| CGTTAAATTTGGCATATTTC+CGG | - | Chr5:48207263-48207282 | None:intergenic | 30.0% | |
| GAATGATTCAAGCATCTAAA+TGG | + | Chr5:48208865-48208884 | MsG0580026919.01.T01:CDS | 30.0% | |
| GCAATTAATAGCATATCTAC+CGG | + | Chr5:48207139-48207158 | MsG0580026919.01.T01:CDS | 30.0% | |
| GGACAAATTCTAAACAATTG+CGG | - | Chr5:48207738-48207757 | None:intergenic | 30.0% | |
| GTTAAATTTGGCATATTTCC+GGG | - | Chr5:48207262-48207281 | None:intergenic | 30.0% | |
| TCATGGTTTAATACGAATGT+GGG | + | Chr5:48207001-48207020 | MsG0580026919.01.T01:CDS | 30.0% | |
| TTACGTACTTGTCAAATTCA+GGG | - | Chr5:48208174-48208193 | None:intergenic | 30.0% | |
| TTCATGGTTTAATACGAATG+TGG | + | Chr5:48207000-48207019 | MsG0580026919.01.T01:CDS | 30.0% | |
| TTTGTGCATTGTGATATTAC+TGG | + | Chr5:48208034-48208053 | MsG0580026919.01.T01:CDS | 30.0% | |
| ! | TGCTACATTGATTGTTGAAT+CGG | + | Chr5:48207321-48207340 | MsG0580026919.01.T01:CDS | 30.0% |
| !! | ATTAATTAGACTTTTGGAGG+AGG | - | Chr5:48208897-48208916 | None:intergenic | 30.0% |
| !! | TGGATTTCATTTTTGGAAGT+GGG | + | Chr5:48207615-48207634 | MsG0580026919.01.T01:intron | 30.0% |
| AAAGTAATGCAAGATGGTAG+TGG | + | Chr5:48207094-48207113 | MsG0580026919.01.T01:CDS | 35.0% | |
| AAAGTATACTAACCGATACG+AGG | - | Chr5:48207369-48207388 | None:intergenic | 35.0% | |
| AATGTTCACAATCACACGTA+CGG | - | Chr5:48207170-48207189 | None:intergenic | 35.0% | |
| ATCATTCCAAGCGTAATGAA+AGG | - | Chr5:48208852-48208871 | None:intergenic | 35.0% | |
| ATCCACAGAACTTCATACTT+TGG | + | Chr5:48208744-48208763 | MsG0580026919.01.T01:intron | 35.0% | |
| ATGCCAAATTTAACGTTTGG+TGG | + | Chr5:48207268-48207287 | MsG0580026919.01.T01:CDS | 35.0% | |
| CATTGTGATATTACTGGAAC+TGG | + | Chr5:48208040-48208059 | MsG0580026919.01.T01:CDS | 35.0% | |
| GTTAAACCTTTCATTACGCT+TGG | + | Chr5:48208843-48208862 | MsG0580026919.01.T01:CDS | 35.0% | |
| GTTACGTACTTGTCAAATTC+AGG | - | Chr5:48208175-48208194 | None:intergenic | 35.0% | |
| GTTCCACCAAACGTTAAATT+TGG | - | Chr5:48207274-48207293 | None:intergenic | 35.0% | |
| TGTTGAATCGGATTATTTCG+TGG | + | Chr5:48207333-48207352 | MsG0580026919.01.T01:CDS | 35.0% | |
| TTTGGAGAATATCAGAACAC+AGG | + | Chr5:48208762-48208781 | MsG0580026919.01.T01:CDS | 35.0% | |
| ! | GAAGTACTACTTTCTTAGCT+AGG | + | Chr5:48208062-48208081 | MsG0580026919.01.T01:CDS | 35.0% |
| !! | GTGGATTTCATTTTTGGAAG+TGG | + | Chr5:48207614-48207633 | MsG0580026919.01.T01:intron | 35.0% |
| !!! | TGACATTTTTAGTCTCTCCA+TGG | + | Chr5:48208316-48208335 | MsG0580026919.01.T01:intron | 35.0% |
| AAAGCAACTAAGTGAAGCAG+AGG | + | Chr5:48208821-48208840 | MsG0580026919.01.T01:CDS | 40.0% | |
| AAGTGGGACGTCTCTATATT+TGG | + | Chr5:48207631-48207650 | MsG0580026919.01.T01:intron | 40.0% | |
| ACACCACTCAATAGAATGTG+GGG | - | Chr5:48208945-48208964 | None:intergenic | 40.0% | |
| ACATTAAGTCAGGTCCTTTG+AGG | + | Chr5:48209014-48209033 | MsG0580026919.01.T01:three_prime_UTR | 40.0% | |
| ACCAATGTTGTTGATCCCAA+AGG | + | Chr5:48208130-48208149 | MsG0580026919.01.T01:CDS | 40.0% | |
| AGACACCACTCAATAGAATG+TGG | - | Chr5:48208947-48208966 | None:intergenic | 40.0% | |
| CCAATGTTGTTGATCCCAAA+GGG | + | Chr5:48208131-48208150 | MsG0580026919.01.T01:CDS | 40.0% | |
| CTCCAAAGTATGAAGTTCTG+TGG | - | Chr5:48208749-48208768 | None:intergenic | 40.0% | |
| GACACCACTCAATAGAATGT+GGG | - | Chr5:48208946-48208965 | None:intergenic | 40.0% | |
| GCCCCATATAATGTAACGAA+AGG | - | Chr5:48207238-48207257 | None:intergenic | 40.0% | |
| GGTGGAACTGCAAAACAATA+TGG | + | Chr5:48207286-48207305 | MsG0580026919.01.T01:CDS | 40.0% | |
| GTACGTGTGATTGTGAACAT+TGG | + | Chr5:48207169-48207188 | MsG0580026919.01.T01:CDS | 40.0% | |
| TGTCATCACAAATTGTGTCC+TGG | - | Chr5:48207553-48207572 | None:intergenic | 40.0% | |
| ! | GGCACTGTGGATTTCATTTT+TGG | + | Chr5:48207608-48207627 | MsG0580026919.01.T01:intron | 40.0% |
| ! | GTTGTGTCGCTAAACCTTTA+TGG | - | Chr5:48208557-48208576 | None:intergenic | 40.0% |
| ! | TTGTAAGTTCTTTGGGTTCC+AGG | + | Chr5:48207532-48207551 | MsG0580026919.01.T01:intron | 40.0% |
| !! | ATTAGACTTTTGGAGGAGGA+AGG | - | Chr5:48208893-48208912 | None:intergenic | 40.0% |
| !! | TTGTGTAATTCAAGGCACTG+TGG | + | Chr5:48207595-48207614 | MsG0580026919.01.T01:intron | 40.0% |
| !!! | AATTTTTTTGGTGGTGGTCG+AGG | - | Chr5:48207822-48207841 | None:intergenic | 40.0% |
| AAGTACCCTTGATCCTGCAT+TGG | + | Chr5:48207042-48207061 | MsG0580026919.01.T01:CDS | 45.0% | |
| AATCACACGTACGGTGTTTC+CGG | - | Chr5:48207161-48207180 | None:intergenic | 45.0% | |
| ACAGAATTCTGCACCAAGAC+CGG | + | Chr5:48207449-48207468 | MsG0580026919.01.T01:intron | 45.0% | |
| ACAGAGCCCAAGTAGATTCA+TGG | + | Chr5:48206984-48207003 | MsG0580026919.01.T01:CDS | 45.0% | |
| AGTCACCAATGCAGGATCAA+GGG | - | Chr5:48207050-48207069 | None:intergenic | 45.0% | |
| ATGTTGTTGATCCCAAAGGG+TGG | + | Chr5:48208134-48208153 | MsG0580026919.01.T01:CDS | 45.0% | |
| CCAACTGAGCTAAACTTACG+AGG | - | Chr5:48207759-48207778 | None:intergenic | 45.0% | |
| CGTGTGATTGTGAACATTGG+TGG | + | Chr5:48207172-48207191 | MsG0580026919.01.T01:CDS | 45.0% | |
| CTACTTTCTTAGCTAGGGCA+TGG | + | Chr5:48208068-48208087 | MsG0580026919.01.T01:CDS | 45.0% | |
| CTTGTCAAATTCAGGGTGCA+TGG | - | Chr5:48208167-48208186 | None:intergenic | 45.0% | |
| GCGGTTGCATTGAGAATTTC+TGG | + | Chr5:48207488-48207507 | MsG0580026919.01.T01:intron | 45.0% | |
| GCTATTAATTGCAGCGGTGA+TGG | - | Chr5:48207131-48207150 | None:intergenic | 45.0% | |
| GGCTGCTAATATCCTCGTAT+CGG | + | Chr5:48207354-48207373 | MsG0580026919.01.T01:CDS | 45.0% | |
| GTGATTGTGAACATTGGTGG+TGG | + | Chr5:48207175-48207194 | MsG0580026919.01.T01:CDS | 45.0% | |
| TGTTGTTGATCCCAAAGGGT+GGG | + | Chr5:48208135-48208154 | MsG0580026919.01.T01:CDS | 45.0% | |
| ! | CCTCGTAAGTTTAGCTCAGT+TGG | + | Chr5:48207756-48207775 | MsG0580026919.01.T01:intron | 45.0% |
| ! | GCTTGTGCTACTATCACTGT+TGG | - | Chr5:48207980-48207999 | None:intergenic | 45.0% |
| ! | GTTACATTATATGGGGCACC+CGG | + | Chr5:48207241-48207260 | MsG0580026919.01.T01:CDS | 45.0% |
| !! | CCCTTTGGGATCAACAACAT+TGG | - | Chr5:48208134-48208153 | None:intergenic | 45.0% |
| !! | TAAGAGCTCTTGGTGATGCT+GGG | + | Chr5:48207954-48207973 | MsG0580026919.01.T01:CDS | 45.0% |
| !! | TTAAGAGCTCTTGGTGATGC+TGG | + | Chr5:48207953-48207972 | MsG0580026919.01.T01:CDS | 45.0% |
| ATGGCGTTATCCCACCCTTT+GGG | - | Chr5:48208148-48208167 | None:intergenic | 50.0% | |
| CAGTCACCAATGCAGGATCA+AGG | - | Chr5:48207051-48207070 | None:intergenic | 50.0% | |
| GCACCCCACATTCTATTGAG+TGG | + | Chr5:48208939-48208958 | MsG0580026919.01.T01:three_prime_UTR | 50.0% | |
| GGACCAAAGTCAGATCCCAA+AGG | + | Chr5:48208783-48208802 | MsG0580026919.01.T01:CDS | 50.0% | |
| TCTACTTGGGCTCTGTTAGC+AGG | - | Chr5:48206980-48206999 | None:intergenic | 50.0% | |
| TGCGGCTAAAGTGTGATTGC+CGG | - | Chr5:48207720-48207739 | None:intergenic | 50.0% | |
| !! | CGTCCTTTGGGATCTGACTT+TGG | - | Chr5:48208789-48208808 | None:intergenic | 50.0% |
| CATGGCGTTATCCCACCCTT+TGG | - | Chr5:48208149-48208168 | None:intergenic | 55.0% | |
| GCGACACTTGCACGTCCTTT+GGG | - | Chr5:48208801-48208820 | None:intergenic | 55.0% | |
| TGCGACACTTGCACGTCCTT+TGG | - | Chr5:48208802-48208821 | None:intergenic | 55.0% | |
| TGGGCTCTGTTAGCAGGAAC+TGG | - | Chr5:48206974-48206993 | None:intergenic | 55.0% | |
| ! | TCCTGCATTGGTGACTGCAG+AGG | + | Chr5:48207054-48207073 | MsG0580026919.01.T01:CDS | 55.0% |
| GCCTCTGCAGTCACCAATGC+AGG | - | Chr5:48207058-48207077 | None:intergenic | 60.0% | |
| ! | GCATTGGTGACTGCAGAGGC+TGG | + | Chr5:48207058-48207077 | MsG0580026919.01.T01:CDS | 60.0% |
| CTGCACCAAGACCGGATGCG+CGG | + | Chr5:48207457-48207476 | MsG0580026919.01.T01:intron | 65.0% | |
| TGCACCAAGACCGGATGCGC+GGG | + | Chr5:48207458-48207477 | MsG0580026919.01.T01:intron | 65.0% | |
| ACCAAGACCGGATGCGCGGG+TGG | + | Chr5:48207461-48207480 | MsG0580026919.01.T01:intron | 70.0% | |
| ACCACCCGCGCATCCGGTCT+TGG | - | Chr5:48207465-48207484 | None:intergenic | 70.0% | |
| CGCTTGACCACCCGCGCATC+CGG | - | Chr5:48207471-48207490 | None:intergenic | 70.0% | |
| CGGATGCGCGGGTGGTCAAG+CGG | + | Chr5:48207469-48207488 | MsG0580026919.01.T01:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 48206836 | 48209110 | 48206836 | ID=MsG0580026919.01;Name=MsG0580026919.01 |
| Chr5 | mRNA | 48206836 | 48209110 | 48206836 | ID=MsG0580026919.01.T01;Parent=MsG0580026919.01;Name=MsG0580026919.01.T01;_AED=0.26;_eAED=0.26;_QI=45|0.5|1|1|1|1|3|199|298 |
| Chr5 | exon | 48206836 | 48207375 | 48206836 | ID=MsG0580026919.01.T01:exon:8510;Parent=MsG0580026919.01.T01 |
| Chr5 | exon | 48207944 | 48208185 | 48207944 | ID=MsG0580026919.01.T01:exon:8511;Parent=MsG0580026919.01.T01 |
| Chr5 | exon | 48208752 | 48209110 | 48208752 | ID=MsG0580026919.01.T01:exon:8512;Parent=MsG0580026919.01.T01 |
| Chr5 | five_prime_UTR | 48206836 | 48206880 | 48206836 | ID=MsG0580026919.01.T01:five_prime_utr;Parent=MsG0580026919.01.T01 |
| Chr5 | CDS | 48206881 | 48207375 | 48206881 | ID=MsG0580026919.01.T01:cds;Parent=MsG0580026919.01.T01 |
| Chr5 | CDS | 48207944 | 48208185 | 48207944 | ID=MsG0580026919.01.T01:cds;Parent=MsG0580026919.01.T01 |
| Chr5 | CDS | 48208752 | 48208911 | 48208752 | ID=MsG0580026919.01.T01:cds;Parent=MsG0580026919.01.T01 |
| Chr5 | three_prime_UTR | 48208912 | 48209110 | 48208912 | ID=MsG0580026919.01.T01:three_prime_utr;Parent=MsG0580026919.01.T01 |
| Gene Sequence |
| Protein sequence |
