Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032758.01.T01 | XP_013452181.1 | 92.33 | 678 | 29 | 7 | 1 | 671 | 1 | 662 | 0 | 1097 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032758.01.T01 | Q9FYR7 | 46.39 | 651 | 257 | 23 | 57 | 671 | 46 | 640 | 2.66E-143 | 435 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032758.01.T01 | A0A072U8U5 | 92.330 | 678 | 29 | 7 | 1 | 671 | 1 | 662 | 0.0 | 1097 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180005559.01 | MsG0680032758.01 | 0.800229 | 1.589770e-48 | 7.363107e-46 |
| MsG0180005846.01 | MsG0680032758.01 | 0.824466 | 7.951283e-54 | 7.048131e-51 |
| MsG0180006095.01 | MsG0680032758.01 | 0.806384 | 8.445628e-50 | 4.577590e-47 |
| MsG0280006425.01 | MsG0680032758.01 | 0.813989 | 1.935594e-51 | 1.283007e-48 |
| MsG0280011105.01 | MsG0680032758.01 | 0.819862 | 9.291544e-53 | 7.235407e-50 |
| MsG0280011171.01 | MsG0680032758.01 | 0.846143 | 2.612780e-59 | 4.454005e-56 |
| MsG0680032758.01 | MsG0780040488.01 | 0.817385 | 3.389390e-52 | 2.464855e-49 |
| MsG0680032758.01 | MsG0880043921.01 | 0.804400 | 2.199876e-49 | 1.133114e-46 |
| MsG0680032758.01 | MsG0880045786.01 | 0.810075 | 1.380234e-50 | 8.241050e-48 |
| MsG0680032758.01 | MsG0880046165.01 | 0.802064 | 6.697520e-49 | 3.249666e-46 |
| MsG0480019395.01 | MsG0680032758.01 | 0.802930 | 4.440141e-49 | 2.202405e-46 |
| MsG0480023421.01 | MsG0680032758.01 | 0.813258 | 2.803601e-51 | 1.821831e-48 |
| MsG0480023460.01 | MsG0680032758.01 | 0.806739 | 7.106930e-50 | 3.887316e-47 |
| MsG0480023756.01 | MsG0680032758.01 | 0.801195 | 1.009812e-48 | 4.792977e-46 |
| MsG0580025045.01 | MsG0680032758.01 | 0.805010 | 1.641125e-49 | 8.587256e-47 |
| MsG0380017410.01 | MsG0680032758.01 | 0.819548 | 1.096475e-52 | 8.463553e-50 |
| MsG0380017946.01 | MsG0680032758.01 | 0.810600 | 1.063239e-50 | 6.436846e-48 |
| MsG0580027954.01 | MsG0680032758.01 | 0.816439 | 5.526603e-52 | 3.915968e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032758.01.T01 | MTR_6g047750 | 92.330 | 678 | 29 | 7 | 1 | 671 | 1 | 662 | 0.0 | 1097 |
| MsG0680032758.01.T01 | MTR_7g057230 | 46.003 | 713 | 285 | 21 | 1 | 670 | 1 | 656 | 3.32e-171 | 504 |
| MsG0680032758.01.T01 | MTR_3g089055 | 36.326 | 479 | 247 | 14 | 222 | 671 | 121 | 570 | 7.72e-80 | 265 |
| MsG0680032758.01.T01 | MTR_3g089055 | 36.326 | 479 | 247 | 14 | 222 | 671 | 116 | 565 | 1.06e-79 | 264 |
| MsG0680032758.01.T01 | MTR_1g029420 | 39.386 | 391 | 195 | 10 | 302 | 671 | 223 | 592 | 2.39e-75 | 253 |
| MsG0680032758.01.T01 | MTR_2g082090 | 35.246 | 488 | 252 | 16 | 219 | 670 | 119 | 578 | 8.71e-65 | 224 |
| MsG0680032758.01.T01 | MTR_5g097480 | 35.101 | 396 | 205 | 13 | 302 | 671 | 175 | 544 | 3.27e-61 | 214 |
| MsG0680032758.01.T01 | MTR_3g056110 | 35.751 | 386 | 216 | 10 | 302 | 671 | 173 | 542 | 1.72e-59 | 209 |
| MsG0680032758.01.T01 | MTR_2g026250 | 31.392 | 395 | 222 | 11 | 302 | 671 | 226 | 596 | 1.82e-55 | 199 |
| MsG0680032758.01.T01 | MTR_4g133660 | 32.468 | 385 | 229 | 10 | 302 | 670 | 173 | 542 | 8.53e-55 | 196 |
| MsG0680032758.01.T01 | MTR_5g094450 | 34.015 | 391 | 220 | 11 | 302 | 671 | 159 | 532 | 6.11e-54 | 194 |
| MsG0680032758.01.T01 | MTR_4g074320 | 52.356 | 191 | 77 | 4 | 246 | 431 | 4 | 185 | 3.31e-48 | 167 |
| MsG0680032758.01.T01 | MTR_4g074310 | 39.669 | 242 | 102 | 6 | 306 | 544 | 1 | 201 | 1.07e-41 | 151 |
| MsG0680032758.01.T01 | MTR_7g027190 | 29.630 | 405 | 215 | 13 | 305 | 671 | 301 | 673 | 2.83e-34 | 139 |
| MsG0680032758.01.T01 | MTR_8g442410 | 30.591 | 389 | 233 | 13 | 303 | 671 | 154 | 525 | 4.86e-34 | 137 |
| MsG0680032758.01.T01 | MTR_3g065980 | 29.668 | 391 | 232 | 12 | 303 | 671 | 171 | 540 | 1.14e-33 | 136 |
| MsG0680032758.01.T01 | MTR_4g064150 | 25.260 | 384 | 262 | 8 | 302 | 670 | 359 | 732 | 1.86e-30 | 128 |
| MsG0680032758.01.T01 | MTR_4g104020 | 29.847 | 392 | 233 | 15 | 303 | 671 | 148 | 520 | 6.67e-30 | 124 |
| MsG0680032758.01.T01 | MTR_2g097410 | 26.440 | 382 | 252 | 12 | 305 | 670 | 372 | 740 | 7.17e-30 | 126 |
| MsG0680032758.01.T01 | MTR_4g064200 | 26.121 | 379 | 253 | 10 | 305 | 670 | 285 | 649 | 1.07e-27 | 119 |
| MsG0680032758.01.T01 | MTR_4g097080 | 26.396 | 394 | 247 | 12 | 301 | 671 | 130 | 503 | 1.57e-27 | 117 |
| MsG0680032758.01.T01 | MTR_2g097350 | 26.211 | 454 | 300 | 13 | 233 | 670 | 205 | 639 | 4.74e-27 | 117 |
| MsG0680032758.01.T01 | MTR_2g097467 | 25.546 | 458 | 303 | 14 | 233 | 670 | 214 | 653 | 5.09e-27 | 117 |
| MsG0680032758.01.T01 | MTR_4g064160 | 26.178 | 382 | 257 | 9 | 302 | 670 | 314 | 683 | 5.66e-27 | 117 |
| MsG0680032758.01.T01 | MTR_2g097463 | 27.798 | 277 | 182 | 6 | 403 | 670 | 387 | 654 | 3.66e-26 | 114 |
| MsG0680032758.01.T01 | MTR_7g062120 | 22.328 | 421 | 292 | 12 | 272 | 671 | 334 | 740 | 2.99e-25 | 111 |
| MsG0680032758.01.T01 | MTR_2g097390 | 26.239 | 343 | 229 | 10 | 340 | 670 | 310 | 640 | 3.23e-25 | 111 |
| MsG0680032758.01.T01 | MTR_2g097473 | 26.667 | 345 | 224 | 10 | 340 | 670 | 324 | 653 | 3.68e-25 | 111 |
| MsG0680032758.01.T01 | MTR_2g097310 | 24.719 | 445 | 305 | 13 | 239 | 670 | 210 | 637 | 1.24e-24 | 109 |
| MsG0680032758.01.T01 | MTR_4g102790 | 31.481 | 270 | 164 | 10 | 410 | 670 | 404 | 661 | 1.23e-23 | 106 |
| MsG0680032758.01.T01 | MTR_5g015950 | 25.472 | 424 | 254 | 10 | 300 | 670 | 31 | 445 | 3.45e-23 | 103 |
| MsG0680032758.01.T01 | MTR_3g053270 | 25.472 | 424 | 254 | 10 | 300 | 670 | 31 | 445 | 3.45e-23 | 103 |
| MsG0680032758.01.T01 | MTR_7g074650 | 28.818 | 347 | 209 | 12 | 338 | 671 | 471 | 792 | 4.44e-23 | 105 |
| MsG0680032758.01.T01 | MTR_4g064120 | 23.055 | 347 | 243 | 7 | 337 | 668 | 286 | 623 | 1.26e-22 | 103 |
| MsG0680032758.01.T01 | MTR_4g064180 | 23.055 | 347 | 243 | 6 | 338 | 669 | 287 | 624 | 2.36e-22 | 102 |
| MsG0680032758.01.T01 | MTR_2g097380 | 24.852 | 338 | 211 | 8 | 340 | 670 | 259 | 560 | 2.45e-21 | 99.0 |
| MsG0680032758.01.T01 | MTR_4g095500 | 25.635 | 433 | 240 | 12 | 300 | 670 | 55 | 467 | 8.13e-20 | 93.6 |
| MsG0680032758.01.T01 | MTR_1g069725 | 24.933 | 373 | 253 | 10 | 305 | 670 | 110 | 462 | 1.70e-19 | 92.4 |
| MsG0680032758.01.T01 | MTR_2g034250 | 29.455 | 275 | 166 | 9 | 410 | 671 | 326 | 585 | 2.65e-18 | 89.4 |
| MsG0680032758.01.T01 | MTR_5g015490 | 25.389 | 386 | 259 | 10 | 305 | 671 | 115 | 490 | 3.00e-18 | 88.6 |
| MsG0680032758.01.T01 | MTR_2g034260 | 28.826 | 281 | 171 | 9 | 404 | 671 | 320 | 584 | 4.17e-18 | 88.6 |
| MsG0680032758.01.T01 | MTR_1g096030 | 27.518 | 407 | 227 | 14 | 305 | 671 | 81 | 459 | 5.45e-18 | 87.8 |
| MsG0680032758.01.T01 | MTR_4g076140 | 26.062 | 353 | 197 | 10 | 376 | 671 | 124 | 469 | 2.41e-17 | 85.9 |
| MsG0680032758.01.T01 | MTR_3g022830 | 30.899 | 178 | 104 | 5 | 505 | 671 | 267 | 436 | 7.52e-17 | 84.0 |
| MsG0680032758.01.T01 | MTR_7g109580 | 26.937 | 271 | 174 | 7 | 410 | 671 | 299 | 554 | 1.06e-16 | 84.3 |
| MsG0680032758.01.T01 | MTR_5g009080 | 31.613 | 155 | 95 | 2 | 523 | 671 | 329 | 478 | 1.69e-15 | 80.1 |
| MsG0680032758.01.T01 | MTR_4g076020 | 27.000 | 300 | 175 | 13 | 381 | 671 | 165 | 429 | 7.09e-13 | 71.6 |
| MsG0680032758.01.T01 | MTR_3g072710 | 26.115 | 314 | 189 | 13 | 376 | 670 | 210 | 499 | 8.31e-12 | 68.6 |
| MsG0680032758.01.T01 | MTR_5g058860 | 24.810 | 395 | 250 | 15 | 305 | 670 | 120 | 496 | 9.10e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032758.01.T01 | AT5G52510 | 46.390 | 651 | 257 | 23 | 57 | 671 | 46 | 640 | 2.71e-144 | 435 |
| MsG0680032758.01.T01 | AT1G21450 | 37.288 | 472 | 238 | 14 | 222 | 671 | 158 | 593 | 2.02e-75 | 253 |
| MsG0680032758.01.T01 | AT2G04890 | 35.602 | 382 | 215 | 11 | 302 | 671 | 51 | 413 | 3.45e-60 | 207 |
| MsG0680032758.01.T01 | AT5G48150 | 36.573 | 391 | 207 | 10 | 302 | 671 | 120 | 490 | 2.46e-59 | 207 |
| MsG0680032758.01.T01 | AT5G48150 | 36.573 | 391 | 207 | 10 | 302 | 671 | 120 | 490 | 2.46e-59 | 207 |
| MsG0680032758.01.T01 | AT5G48150 | 36.573 | 391 | 207 | 10 | 302 | 671 | 120 | 490 | 2.46e-59 | 207 |
| MsG0680032758.01.T01 | AT5G48150 | 36.573 | 391 | 207 | 10 | 302 | 671 | 120 | 490 | 2.46e-59 | 207 |
| MsG0680032758.01.T01 | AT4G17230 | 33.766 | 385 | 225 | 9 | 302 | 671 | 156 | 525 | 8.42e-55 | 196 |
| MsG0680032758.01.T01 | AT4G17230 | 33.766 | 385 | 225 | 9 | 302 | 671 | 156 | 525 | 8.42e-55 | 196 |
| MsG0680032758.01.T01 | AT1G50600 | 33.766 | 385 | 225 | 9 | 302 | 671 | 157 | 526 | 7.15e-53 | 191 |
| MsG0680032758.01.T01 | AT1G50600 | 34.286 | 385 | 223 | 9 | 302 | 671 | 228 | 597 | 1.07e-52 | 192 |
| MsG0680032758.01.T01 | AT1G50600 | 34.286 | 385 | 223 | 9 | 302 | 671 | 232 | 601 | 1.52e-52 | 191 |
| MsG0680032758.01.T01 | AT2G01570 | 30.607 | 379 | 233 | 10 | 303 | 671 | 223 | 581 | 6.60e-35 | 140 |
| MsG0680032758.01.T01 | AT2G29060 | 27.146 | 431 | 277 | 13 | 267 | 670 | 234 | 654 | 1.98e-34 | 139 |
| MsG0680032758.01.T01 | AT2G29060 | 27.146 | 431 | 277 | 13 | 267 | 670 | 271 | 691 | 2.03e-34 | 140 |
| MsG0680032758.01.T01 | AT1G14920 | 29.288 | 379 | 238 | 10 | 303 | 671 | 171 | 529 | 4.05e-34 | 137 |
| MsG0680032758.01.T01 | AT5G59450 | 25.750 | 400 | 271 | 8 | 287 | 671 | 210 | 598 | 2.68e-33 | 135 |
| MsG0680032758.01.T01 | AT1G07530 | 25.214 | 468 | 309 | 14 | 231 | 670 | 310 | 764 | 1.08e-32 | 135 |
| MsG0680032758.01.T01 | AT1G66350 | 28.469 | 418 | 266 | 12 | 266 | 671 | 110 | 506 | 1.23e-32 | 132 |
| MsG0680032758.01.T01 | AT3G03450 | 32.000 | 300 | 186 | 6 | 378 | 671 | 258 | 545 | 3.39e-32 | 132 |
| MsG0680032758.01.T01 | AT2G29065 | 27.532 | 385 | 250 | 11 | 305 | 670 | 253 | 627 | 8.03e-31 | 128 |
| MsG0680032758.01.T01 | AT5G17490 | 29.178 | 377 | 240 | 11 | 305 | 671 | 157 | 516 | 1.05e-29 | 124 |
| MsG0680032758.01.T01 | AT3G46600 | 24.740 | 384 | 255 | 9 | 305 | 671 | 5 | 371 | 1.86e-28 | 118 |
| MsG0680032758.01.T01 | AT3G46600 | 23.282 | 451 | 306 | 10 | 238 | 671 | 120 | 547 | 2.78e-28 | 120 |
| MsG0680032758.01.T01 | AT3G46600 | 23.282 | 451 | 306 | 10 | 238 | 671 | 152 | 579 | 3.13e-28 | 120 |
| MsG0680032758.01.T01 | AT1G07520 | 24.103 | 390 | 270 | 10 | 298 | 670 | 312 | 692 | 7.91e-26 | 113 |
| MsG0680032758.01.T01 | AT1G07520 | 24.103 | 390 | 270 | 10 | 298 | 670 | 313 | 693 | 9.13e-26 | 113 |
| MsG0680032758.01.T01 | AT1G07520 | 24.103 | 390 | 270 | 10 | 298 | 670 | 148 | 528 | 3.53e-25 | 110 |
| MsG0680032758.01.T01 | AT1G07520 | 24.103 | 390 | 270 | 10 | 298 | 670 | 148 | 528 | 3.53e-25 | 110 |
| MsG0680032758.01.T01 | AT2G37650 | 24.422 | 389 | 255 | 11 | 302 | 671 | 345 | 713 | 3.08e-23 | 105 |
| MsG0680032758.01.T01 | AT3G50650 | 32.119 | 302 | 176 | 13 | 386 | 671 | 254 | 542 | 3.09e-23 | 104 |
| MsG0680032758.01.T01 | AT5G66770 | 30.347 | 346 | 212 | 12 | 340 | 671 | 254 | 584 | 3.42e-23 | 104 |
| MsG0680032758.01.T01 | AT2G37650 | 24.359 | 390 | 254 | 11 | 302 | 671 | 333 | 701 | 3.87e-23 | 105 |
| MsG0680032758.01.T01 | AT3G54220 | 28.646 | 384 | 224 | 17 | 307 | 670 | 296 | 649 | 6.37e-22 | 101 |
| MsG0680032758.01.T01 | AT4G37650 | 26.119 | 402 | 251 | 12 | 301 | 671 | 143 | 529 | 7.39e-21 | 97.1 |
| MsG0680032758.01.T01 | AT3G49950 | 25.831 | 391 | 257 | 13 | 302 | 670 | 28 | 407 | 1.47e-20 | 95.1 |
| MsG0680032758.01.T01 | AT1G50420 | 32.903 | 155 | 93 | 3 | 523 | 671 | 330 | 479 | 3.31e-17 | 85.5 |
| MsG0680032758.01.T01 | AT1G55580 | 22.892 | 415 | 264 | 11 | 302 | 671 | 42 | 445 | 1.09e-15 | 80.5 |
| MsG0680032758.01.T01 | AT2G45160 | 25.683 | 366 | 241 | 12 | 319 | 671 | 292 | 639 | 4.79e-15 | 79.3 |
| MsG0680032758.01.T01 | AT1G63100 | 28.470 | 281 | 166 | 12 | 410 | 670 | 388 | 653 | 2.52e-13 | 73.9 |
| MsG0680032758.01.T01 | AT1G63100 | 28.470 | 281 | 166 | 12 | 410 | 670 | 363 | 628 | 3.41e-13 | 73.2 |
| MsG0680032758.01.T01 | AT4G36710 | 24.869 | 382 | 254 | 14 | 303 | 671 | 124 | 485 | 2.94e-12 | 70.1 |
| MsG0680032758.01.T01 | AT4G08250 | 26.045 | 311 | 195 | 12 | 376 | 670 | 185 | 476 | 1.52e-11 | 67.8 |
Find 144 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGTAATGATGAAAATTT+TGG | 0.163576 | 6:-48932718 | None:intergenic |
| GTTGATGTTGTTGTTGTTCT+TGG | 0.177029 | 6:-48932554 | None:intergenic |
| ATTGGGCCCGGGCCCGGGCC+TGG | 0.184475 | 6:+48932974 | MsG0680032758.01.T01:CDS |
| GTTTATTATTTGACCTAAAT+TGG | 0.210302 | 6:-48932744 | None:intergenic |
| CGAGTTGACTCGCGAGTTAT+TGG | 0.228199 | 6:+48933657 | MsG0680032758.01.T01:CDS |
| GGCTGCAAATCTCGCAATTC+TGG | 0.228552 | 6:+48933372 | MsG0680032758.01.T01:CDS |
| AGAATGATAAAGGGGTATTA+TGG | 0.232029 | 6:-48932613 | None:intergenic |
| GAGACTTATCAGAATCTAAT+TGG | 0.254281 | 6:+48932956 | MsG0680032758.01.T01:CDS |
| ACCAGGCCCAGGCCCGGGCC+CGG | 0.260742 | 6:-48932981 | None:intergenic |
| TTGGGCCCGGGCCCGGGCCT+GGG | 0.276517 | 6:+48932975 | MsG0680032758.01.T01:CDS |
| TAAGGGTATTGTTGTAATTC+AGG | 0.276863 | 6:-48932641 | None:intergenic |
| TTGTTTCAAGGTTGGTTTCA+TGG | 0.293135 | 6:+48933351 | MsG0680032758.01.T01:CDS |
| CCTGTTGTTGCGGAATTGTT+CGG | 0.297926 | 6:+48933283 | MsG0680032758.01.T01:CDS |
| CATTACAGAAACTCCAATTT+AGG | 0.314685 | 6:+48932731 | MsG0680032758.01.T01:CDS |
| TTCAATGCCGGCGGTGGTGC+TGG | 0.325741 | 6:+48932218 | MsG0680032758.01.T01:CDS |
| CCCGGGCCCGGGCCTGGGCC+TGG | 0.325972 | 6:+48932980 | MsG0680032758.01.T01:CDS |
| AATCTAATTGGGCCCGGGCC+CGG | 0.326783 | 6:+48932968 | MsG0680032758.01.T01:CDS |
| CTGTTGTTGCGGAATTGTTC+GGG | 0.326798 | 6:+48933284 | MsG0680032758.01.T01:CDS |
| GAATCTGAATTCGATGAATT+CGG | 0.332765 | 6:+48933195 | MsG0680032758.01.T01:CDS |
| ATCTAATTGGGCCCGGGCCC+GGG | 0.341116 | 6:+48932969 | MsG0680032758.01.T01:CDS |
| TCAGGTAGTGAGAATGATAA+AGG | 0.345541 | 6:-48932623 | None:intergenic |
| GCCCGGGCCTGGGCCTGGTC+AGG | 0.350231 | 6:+48932985 | MsG0680032758.01.T01:CDS |
| CCAGGCCCAGGCCCGGGCCC+GGG | 0.351049 | 6:-48932980 | None:intergenic |
| TCAACGGTTGGCGAATTTCA+TGG | 0.363692 | 6:+48933219 | MsG0680032758.01.T01:CDS |
| TGGTATTTGCTTTGGTTGGA+TGG | 0.365888 | 6:+48934161 | MsG0680032758.01.T01:CDS |
| CGCTGTTTCAATGTCATCGC+CGG | 0.371301 | 6:+48932193 | None:intergenic |
| CAAGATTAAGATTGTTGAAA+TGG | 0.384846 | 6:-48932469 | None:intergenic |
| GAGTTGACTCGCGAGTTATT+GGG | 0.392816 | 6:+48933658 | MsG0680032758.01.T01:CDS |
| AGCCTGACCAGGCCCAGGCC+CGG | 0.403061 | 6:-48932987 | None:intergenic |
| GGCGCGTGTTGCAGAGTCAT+GGG | 0.403439 | 6:+48933858 | MsG0680032758.01.T01:CDS |
| AAACGTTGTGTTTGGTGGTA+AGG | 0.410588 | 6:-48932659 | None:intergenic |
| GAAGCGGTTGTTGTTGTTGT+TGG | 0.416369 | 6:-48932352 | None:intergenic |
| TTTCGAGTTTCGTGTTGTTT+CGG | 0.418985 | 6:+48933615 | MsG0680032758.01.T01:CDS |
| ATTAAGTCGCGACTCAATAT+CGG | 0.419497 | 6:+48934087 | MsG0680032758.01.T01:CDS |
| CAAGCGGAGAAGCTAAGAAT+TGG | 0.420635 | 6:+48933592 | MsG0680032758.01.T01:CDS |
| GAAGAAGATGGTGGTTGTTA+TGG | 0.422407 | 6:-48932307 | None:intergenic |
| GAATGATAAAGGGGTATTAT+GGG | 0.425264 | 6:-48932612 | None:intergenic |
| ATGGTGGTTGTTATGGTGGT+TGG | 0.425721 | 6:-48932300 | None:intergenic |
| ATGGCGCGCAAGGATGAGTA+TGG | 0.425941 | 6:+48934020 | MsG0680032758.01.T01:CDS |
| CAGGTAGTGAGAATGATAAA+GGG | 0.426000 | 6:-48932622 | None:intergenic |
| AATAATAAACTCAGTTCAAC+CGG | 0.426660 | 6:+48932757 | MsG0680032758.01.T01:CDS |
| CTCAGTTCAACCGGTTCAAA+CGG | 0.429488 | 6:+48932766 | MsG0680032758.01.T01:CDS |
| GGAAAACTCGGTTTGTTTCA+AGG | 0.430920 | 6:+48933339 | MsG0680032758.01.T01:CDS |
| TCAAGCACAAGCTCAGAAAC+TGG | 0.431854 | 6:+48933009 | MsG0680032758.01.T01:CDS |
| GGTTCAAACGGTTCAACAAC+CGG | 0.434886 | 6:+48932778 | MsG0680032758.01.T01:CDS |
| GCCTGACCAGGCCCAGGCCC+GGG | 0.435828 | 6:-48932986 | None:intergenic |
| GTTGTTATGGTGGTTGGTTG+TGG | 0.439546 | 6:-48932294 | None:intergenic |
| TGGCGCGTGTTGCAGAGTCA+TGG | 0.446031 | 6:+48933857 | MsG0680032758.01.T01:CDS |
| CACTCACGGTTGCTTCTGCT+TGG | 0.448967 | 6:+48934190 | MsG0680032758.01.T01:CDS |
| TCCGTTGACACACTTTCATC+CGG | 0.449000 | 6:-48933736 | None:intergenic |
| GAACACCTAAACGTTGTGTT+TGG | 0.450513 | 6:-48932667 | None:intergenic |
| TAACGAGTCGCGAGTTAACT+CGG | 0.451482 | 6:+48934113 | MsG0680032758.01.T01:CDS |
| AGCGCGTGAGGTGGCGCGTG+AGG | 0.453192 | 6:+48933489 | MsG0680032758.01.T01:CDS |
| ATGGTGGTATTTGCTTTGGT+TGG | 0.453307 | 6:+48934157 | MsG0680032758.01.T01:CDS |
| GTATAAGCTGAATAGAATTC+CGG | 0.455999 | 6:+48933717 | MsG0680032758.01.T01:CDS |
| CGCGCAAGGATGAGTATGGC+GGG | 0.461869 | 6:+48934024 | MsG0680032758.01.T01:CDS |
| GAGAATGGTGGTATTTGCTT+TGG | 0.464441 | 6:+48934153 | MsG0680032758.01.T01:CDS |
| GGTATTTGCTTTGGTTGGAT+GGG | 0.465037 | 6:+48934162 | MsG0680032758.01.T01:CDS |
| CACCTAAACGTTGTGTTTGG+TGG | 0.465276 | 6:-48932664 | None:intergenic |
| CCGGGTTTCAATGCCGGCGG+TGG | 0.465704 | 6:+48932212 | MsG0680032758.01.T01:CDS |
| GCTTGTGCTTGAGCCTGACC+AGG | 0.466408 | 6:-48932998 | None:intergenic |
| CCGAACAATTCCGCAACAAC+AGG | 0.470616 | 6:-48933283 | None:intergenic |
| GTTGAAATCGAGGATGAATC+CGG | 0.473635 | 6:+48933249 | MsG0680032758.01.T01:CDS |
| GGTTGTTGAACCGTTTGAAC+CGG | 0.473834 | 6:-48932776 | None:intergenic |
| CGCTTTATGTGACTCGGTCG+AGG | 0.476910 | 6:+48933891 | MsG0680032758.01.T01:CDS |
| GTTGTTGTTGGTGTTGGGTA+CGG | 0.479668 | 6:-48932340 | None:intergenic |
| GCTTGAGCCTGACCAGGCCC+AGG | 0.481659 | 6:-48932992 | None:intergenic |
| GTTGTTGCGGTGGCGGAGAA+CGG | 0.484971 | 6:+48933526 | MsG0680032758.01.T01:CDS |
| AGACTTATCAGAATCTAATT+GGG | 0.485068 | 6:+48932957 | MsG0680032758.01.T01:CDS |
| TCATCGCCGGGTTTCAATGC+CGG | 0.485973 | 6:+48932206 | MsG0680032758.01.T01:CDS |
| CTCCTTCCTCAATCTTGACT+CGG | 0.486598 | 6:-48933924 | None:intergenic |
| AACTCGGTTTGTTTCAAGGT+TGG | 0.489425 | 6:+48933343 | MsG0680032758.01.T01:CDS |
| GCTCAAACCATGACCATGTC+CGG | 0.491270 | 6:+48932800 | MsG0680032758.01.T01:CDS |
| AACGTTGTGTTTGGTGGTAA+GGG | 0.491304 | 6:-48932658 | None:intergenic |
| TTGCTTTAGAGATCTTGAAC+AGG | 0.498596 | 6:+48933158 | MsG0680032758.01.T01:CDS |
| TACCACCAAACACAACGTTT+AGG | 0.501366 | 6:+48932662 | MsG0680032758.01.T01:CDS |
| TCAGTTGTTGTTGGAAAACT+CGG | 0.502026 | 6:+48933327 | MsG0680032758.01.T01:CDS |
| CTGTTATTACAACAAGTGAA+TGG | 0.505097 | 6:+48932930 | MsG0680032758.01.T01:CDS |
| GCTGTTTCAATGTCATCGCC+GGG | 0.507997 | 6:+48932194 | None:intergenic |
| CGCGCTCAAAGCGCGTGAGG+TGG | 0.510412 | 6:+48933480 | MsG0680032758.01.T01:CDS |
| TATCAGAATCTAATTGGGCC+CGG | 0.512120 | 6:+48932962 | MsG0680032758.01.T01:CDS |
| GTTGAAGGTTGTTGCGGTGG+CGG | 0.514705 | 6:+48933519 | MsG0680032758.01.T01:CDS |
| ATCCAACAAAATCGCTTCAT+CGG | 0.515958 | 6:+48932404 | MsG0680032758.01.T01:CDS |
| CTCGAAGATAACGACGAAGA+AGG | 0.517103 | 6:+48932890 | MsG0680032758.01.T01:CDS |
| GATGACGTTGTTGATGAAGT+TGG | 0.523797 | 6:-48933043 | None:intergenic |
| CCACCGCCGGCATTGAAACC+CGG | 0.525923 | 6:-48932212 | None:intergenic |
| CGGCGGTGGTGCTGGCTCGT+CGG | 0.527842 | 6:+48932226 | MsG0680032758.01.T01:CDS |
| TGAGTCGACTCAGTTGTTGT+TGG | 0.533088 | 6:+48933318 | MsG0680032758.01.T01:CDS |
| TTCCTCAATCTTGACTCGGT+CGG | 0.538040 | 6:-48933920 | None:intergenic |
| GCGCGTGAGGTGGCGCGTGA+GGG | 0.538659 | 6:+48933490 | MsG0680032758.01.T01:CDS |
| TCACACTCTTCTACAAGAGT+TGG | 0.538873 | 6:+48932856 | MsG0680032758.01.T01:CDS |
| TTTAGAGATCTTGAACAGGT+TGG | 0.541908 | 6:+48933162 | MsG0680032758.01.T01:CDS |
| GACATGGTCATGGTTTGAGC+CGG | 0.544834 | 6:-48932797 | None:intergenic |
| TAACGACGAAGAAGGTGAAA+CGG | 0.546401 | 6:+48932898 | MsG0680032758.01.T01:CDS |
| CTTGGTGGCTTGTGAAGGTA+GGG | 0.547488 | 6:+48933966 | MsG0680032758.01.T01:CDS |
| ATCAGAATCTAATTGGGCCC+GGG | 0.550360 | 6:+48932963 | MsG0680032758.01.T01:CDS |
| GAAGATGGTGGTTGTTATGG+TGG | 0.553807 | 6:-48932304 | None:intergenic |
| GATGAATTCGGATCAACGGT+TGG | 0.558161 | 6:+48933207 | MsG0680032758.01.T01:CDS |
| GAAACTCGCGCCGCGTGTTG+TGG | 0.562154 | 6:+48933792 | MsG0680032758.01.T01:CDS |
| TCGAAAATTGTGTAACTTGG+TGG | 0.564401 | 6:+48933951 | MsG0680032758.01.T01:CDS |
| GATGCTGCATTTGAAGAAAA+CGG | 0.565293 | 6:+48933394 | MsG0680032758.01.T01:CDS |
| TGAAAATCCACCTGTTGTTG+CGG | 0.565636 | 6:+48933273 | MsG0680032758.01.T01:CDS |
| GACCGAGTCAAGATTGAGGA+AGG | 0.567652 | 6:+48933922 | MsG0680032758.01.T01:CDS |
| AACGAGTCGCGAGTTAACTC+GGG | 0.568702 | 6:+48934114 | MsG0680032758.01.T01:CDS |
| CGACGAGCCAGCACCACCGC+CGG | 0.576724 | 6:-48932225 | None:intergenic |
| TCCGGATGAAAGTGTGTCAA+CGG | 0.577258 | 6:+48933735 | MsG0680032758.01.T01:CDS |
| TAGCTGTGGGTGAGATGTTG+AGG | 0.577796 | 6:+48933566 | MsG0680032758.01.T01:CDS |
| ACTTGGTGGCTTGTGAAGGT+AGG | 0.578105 | 6:+48933965 | MsG0680032758.01.T01:CDS |
| AACAATTCCGCAACAACAGG+TGG | 0.579323 | 6:-48933280 | None:intergenic |
| CTCAGTGTGAAAGAAGAGAA+TGG | 0.580110 | 6:+48934138 | MsG0680032758.01.T01:CDS |
| GCTGCAAATGCGATTTCAGA+AGG | 0.580818 | 6:+48933124 | MsG0680032758.01.T01:CDS |
| GTCATCAACTTCTTCATCAG+CGG | 0.587327 | 6:+48933060 | MsG0680032758.01.T01:CDS |
| GTTGTTGGTTGATGAAGAAG+AGG | 0.588575 | 6:-48932689 | None:intergenic |
| CTCGACCGAGTCACATAAAG+CGG | 0.588841 | 6:-48933890 | None:intergenic |
| TTACTCCGCTTTATGTGACT+CGG | 0.591971 | 6:+48933885 | MsG0680032758.01.T01:CDS |
| GCGTGAGGGATTGAAGTTGA+AGG | 0.593574 | 6:+48933504 | MsG0680032758.01.T01:CDS |
| GGTAAAGAGAAGGAAGAAGA+TGG | 0.595546 | 6:-48932319 | None:intergenic |
| TGGTGAGAGCGTTGAAATCG+AGG | 0.600312 | 6:+48933239 | MsG0680032758.01.T01:CDS |
| TGTAACTTGGTGGCTTGTGA+AGG | 0.611397 | 6:+48933961 | MsG0680032758.01.T01:CDS |
| TTCCGACCGAGTCAAGATTG+AGG | 0.611400 | 6:+48933918 | MsG0680032758.01.T01:CDS |
| AGGTAGTGAGAATGATAAAG+GGG | 0.611929 | 6:-48932621 | None:intergenic |
| TGTTGGGTACGGTAAAGAGA+AGG | 0.618648 | 6:-48932329 | None:intergenic |
| GCGCGTGTTGCAGAGTCATG+GGG | 0.623740 | 6:+48933859 | MsG0680032758.01.T01:CDS |
| GAAGTTGAAGGTTGTTGCGG+TGG | 0.623930 | 6:+48933516 | MsG0680032758.01.T01:CDS |
| ATTGAAGTTGAAGGTTGTTG+CGG | 0.625551 | 6:+48933513 | MsG0680032758.01.T01:CDS |
| TCACGCGCTCAAAGCGCGTG+AGG | 0.625815 | 6:+48933477 | MsG0680032758.01.T01:CDS |
| GTTGCGGTGGCGGAGAACGG+CGG | 0.627141 | 6:+48933529 | MsG0680032758.01.T01:CDS |
| AAGGTAGGGATCGTGTCGAA+AGG | 0.628894 | 6:+48933980 | MsG0680032758.01.T01:CDS |
| GCCGCGTGTTGTGGTTGTTG+TGG | 0.629120 | 6:+48933801 | MsG0680032758.01.T01:CDS |
| TCCACAACAACCACAACACG+CGG | 0.636009 | 6:-48933802 | None:intergenic |
| GAGTCGAAAATTGTGTAACT+TGG | 0.636503 | 6:+48933948 | MsG0680032758.01.T01:CDS |
| ATTCGATGAATTCGGATCAA+CGG | 0.636960 | 6:+48933203 | MsG0680032758.01.T01:CDS |
| AAAGAGAAGGAAGAAGATGG+TGG | 0.646639 | 6:-48932316 | None:intergenic |
| TCGCCGGGTTTCAATGCCGG+CGG | 0.646747 | 6:+48932209 | MsG0680032758.01.T01:CDS |
| GCGCGCAAGGATGAGTATGG+CGG | 0.653133 | 6:+48934023 | MsG0680032758.01.T01:CDS |
| TGAGATGTTGAGGCTTCAAG+CGG | 0.656124 | 6:+48933576 | MsG0680032758.01.T01:CDS |
| CGTCGCAAAAGTGTGTCACG+TGG | 0.664510 | 6:-48933763 | None:intergenic |
| TTGGATGGGAAGAACACTCA+CGG | 0.668699 | 6:+48934176 | MsG0680032758.01.T01:CDS |
| GGATCGTGTCGAAAGGTGTG+AGG | 0.671431 | 6:+48933987 | MsG0680032758.01.T01:CDS |
| GCGCAAGGATGAGTATGGCG+GGG | 0.685055 | 6:+48934025 | MsG0680032758.01.T01:CDS |
| GAGTCGCGACTTAATCGACT+CGG | 0.695155 | 6:-48934079 | None:intergenic |
| TGATGATAGAGTGATAGCTG+TGG | 0.707351 | 6:+48933552 | MsG0680032758.01.T01:CDS |
| GATGATAGAGTGATAGCTGT+GGG | 0.725067 | 6:+48933553 | MsG0680032758.01.T01:CDS |
| AGTGTGAAAGAAGAGAATGG+TGG | 0.746285 | 6:+48934141 | MsG0680032758.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTATTATTTGACCTAAAT+TGG | - | Chr6:48932747-48932766 | None:intergenic | 20.0% |
| !!! | AAATTTTGGTTAATTGTTGT+TGG | - | Chr6:48932707-48932726 | None:intergenic | 20.0% |
| !!! | TTCTGTAATGATGAAAATTT+TGG | - | Chr6:48932721-48932740 | None:intergenic | 20.0% |
| ! | AATAATAAACTCAGTTCAAC+CGG | + | Chr6:48932757-48932776 | MsG0680032758.01.T01:CDS | 25.0% |
| ! | AGACTTATCAGAATCTAATT+GGG | + | Chr6:48932957-48932976 | MsG0680032758.01.T01:CDS | 25.0% |
| ! | CAAGATTAAGATTGTTGAAA+TGG | - | Chr6:48932472-48932491 | None:intergenic | 25.0% |
| !!! | GTGTAGTTGATTTTGAAATT+GGG | + | Chr6:48933428-48933447 | MsG0680032758.01.T01:CDS | 25.0% |
| !!! | GTTGTTTTCTTCTATTTTAC+CGG | - | Chr6:48932822-48932841 | None:intergenic | 25.0% |
| !!! | TGTGTAGTTGATTTTGAAAT+TGG | + | Chr6:48933427-48933446 | MsG0680032758.01.T01:CDS | 25.0% |
| CATTACAGAAACTCCAATTT+AGG | + | Chr6:48932731-48932750 | MsG0680032758.01.T01:CDS | 30.0% | |
| CTGTTATTACAACAAGTGAA+TGG | + | Chr6:48932930-48932949 | MsG0680032758.01.T01:CDS | 30.0% | |
| GAATCTGAATTCGATGAATT+CGG | + | Chr6:48933195-48933214 | MsG0680032758.01.T01:CDS | 30.0% | |
| GAGACTTATCAGAATCTAAT+TGG | + | Chr6:48932956-48932975 | MsG0680032758.01.T01:CDS | 30.0% | |
| GTATAAGCTGAATAGAATTC+CGG | + | Chr6:48933717-48933736 | MsG0680032758.01.T01:CDS | 30.0% | |
| !! | AGAATGATAAAGGGGTATTA+TGG | - | Chr6:48932616-48932635 | None:intergenic | 30.0% |
| !! | GAATGATAAAGGGGTATTAT+GGG | - | Chr6:48932615-48932634 | None:intergenic | 30.0% |
| !! | TAAGGGTATTGTTGTAATTC+AGG | - | Chr6:48932644-48932663 | None:intergenic | 30.0% |
| !! | TGAAATGGTGATTTTGTTGT+TGG | - | Chr6:48932457-48932476 | None:intergenic | 30.0% |
| !!! | GAAATGGTGATTTTGTTGTT+GGG | - | Chr6:48932456-48932475 | None:intergenic | 30.0% |
| AGGTAGTGAGAATGATAAAG+GGG | - | Chr6:48932624-48932643 | None:intergenic | 35.0% | |
| ATCCAACAAAATCGCTTCAT+CGG | + | Chr6:48932404-48932423 | MsG0680032758.01.T01:CDS | 35.0% | |
| ATTAAGTCGCGACTCAATAT+CGG | + | Chr6:48934087-48934106 | MsG0680032758.01.T01:CDS | 35.0% | |
| ATTCGATGAATTCGGATCAA+CGG | + | Chr6:48933203-48933222 | MsG0680032758.01.T01:CDS | 35.0% | |
| ATTGAAGTTGAAGGTTGTTG+CGG | + | Chr6:48933513-48933532 | MsG0680032758.01.T01:CDS | 35.0% | |
| CAGGTAGTGAGAATGATAAA+GGG | - | Chr6:48932625-48932644 | None:intergenic | 35.0% | |
| GAAGGATCTAGAAAAATTGG+AGG | - | Chr6:48932377-48932396 | None:intergenic | 35.0% | |
| GAGGAAGGATCTAGAAAAAT+TGG | - | Chr6:48932380-48932399 | None:intergenic | 35.0% | |
| GAGTCGAAAATTGTGTAACT+TGG | + | Chr6:48933948-48933967 | MsG0680032758.01.T01:CDS | 35.0% | |
| GATGCTGCATTTGAAGAAAA+CGG | + | Chr6:48933394-48933413 | MsG0680032758.01.T01:CDS | 35.0% | |
| TCAGGTAGTGAGAATGATAA+AGG | - | Chr6:48932626-48932645 | None:intergenic | 35.0% | |
| TCGAAAATTGTGTAACTTGG+TGG | + | Chr6:48933951-48933970 | MsG0680032758.01.T01:CDS | 35.0% | |
| TCTAGAAAAATTGGAGGAAG+CGG | - | Chr6:48932371-48932390 | None:intergenic | 35.0% | |
| TTTAGAGATCTTGAACAGGT+TGG | + | Chr6:48933162-48933181 | MsG0680032758.01.T01:CDS | 35.0% | |
| ! | GATAGTATTTTGTGATCTGC+CGG | - | Chr6:48932261-48932280 | None:intergenic | 35.0% |
| ! | GTTGATGTTGTTGTTGTTCT+TGG | - | Chr6:48932557-48932576 | None:intergenic | 35.0% |
| ! | TCAGTTGTTGTTGGAAAACT+CGG | + | Chr6:48933327-48933346 | MsG0680032758.01.T01:CDS | 35.0% |
| ! | TTCTTCTATTTTACCGGACA+TGG | - | Chr6:48932816-48932835 | None:intergenic | 35.0% |
| ! | TTGTTGTTGTTGTTGGTGTT+GGG | - | Chr6:48932348-48932367 | None:intergenic | 35.0% |
| !! | TGTTTTGAACAAACAGAAGC+AGG | - | Chr6:48933091-48933110 | None:intergenic | 35.0% |
| !! | TTGCTTTAGAGATCTTGAAC+AGG | + | Chr6:48933158-48933177 | MsG0680032758.01.T01:CDS | 35.0% |
| !! | TTGTTTCAAGGTTGGTTTCA+TGG | + | Chr6:48933351-48933370 | MsG0680032758.01.T01:CDS | 35.0% |
| !! | TTTCGAGTTTCGTGTTGTTT+CGG | + | Chr6:48933615-48933634 | MsG0680032758.01.T01:CDS | 35.0% |
| !!! | AGTTGATTTTGAAATTGGGC+AGG | + | Chr6:48933432-48933451 | MsG0680032758.01.T01:CDS | 35.0% |
| !!! | GTTGATTTTGAAATTGGGCA+GGG | + | Chr6:48933433-48933452 | MsG0680032758.01.T01:CDS | 35.0% |
| AAAGAGAAGGAAGAAGATGG+TGG | - | Chr6:48932319-48932338 | None:intergenic | 40.0% | |
| AGTGTGAAAGAAGAGAATGG+TGG | + | Chr6:48934141-48934160 | MsG0680032758.01.T01:CDS | 40.0% | |
| ATGGTGGTATTTGCTTTGGT+TGG | + | Chr6:48934157-48934176 | MsG0680032758.01.T01:CDS | 40.0% | |
| CTCAGTGTGAAAGAAGAGAA+TGG | + | Chr6:48934138-48934157 | MsG0680032758.01.T01:CDS | 40.0% | |
| GAACACCTAAACGTTGTGTT+TGG | - | Chr6:48932670-48932689 | None:intergenic | 40.0% | |
| GAGAATGGTGGTATTTGCTT+TGG | + | Chr6:48934153-48934172 | MsG0680032758.01.T01:CDS | 40.0% | |
| GATGATAGAGTGATAGCTGT+GGG | + | Chr6:48933553-48933572 | MsG0680032758.01.T01:CDS | 40.0% | |
| GGTAAAGAGAAGGAAGAAGA+TGG | - | Chr6:48932322-48932341 | None:intergenic | 40.0% | |
| GGTATTTGCTTTGGTTGGAT+GGG | + | Chr6:48934162-48934181 | MsG0680032758.01.T01:CDS | 40.0% | |
| GTCATCAACTTCTTCATCAG+CGG | + | Chr6:48933060-48933079 | MsG0680032758.01.T01:CDS | 40.0% | |
| GTTGAAATCGAGGATGAATC+CGG | + | Chr6:48933249-48933268 | MsG0680032758.01.T01:CDS | 40.0% | |
| TAACGACGAAGAAGGTGAAA+CGG | + | Chr6:48932898-48932917 | MsG0680032758.01.T01:CDS | 40.0% | |
| TACCACCAAACACAACGTTT+AGG | + | Chr6:48932662-48932681 | MsG0680032758.01.T01:CDS | 40.0% | |
| TATCAGAATCTAATTGGGCC+CGG | + | Chr6:48932962-48932981 | MsG0680032758.01.T01:CDS | 40.0% | |
| TCACACTCTTCTACAAGAGT+TGG | + | Chr6:48932856-48932875 | MsG0680032758.01.T01:CDS | 40.0% | |
| TGAAAATCCACCTGTTGTTG+CGG | + | Chr6:48933273-48933292 | MsG0680032758.01.T01:CDS | 40.0% | |
| TGATGATAGAGTGATAGCTG+TGG | + | Chr6:48933552-48933571 | MsG0680032758.01.T01:CDS | 40.0% | |
| TGGTATTTGCTTTGGTTGGA+TGG | + | Chr6:48934161-48934180 | MsG0680032758.01.T01:CDS | 40.0% | |
| TTACTCCGCTTTATGTGACT+CGG | + | Chr6:48933885-48933904 | MsG0680032758.01.T01:CDS | 40.0% | |
| ! | AAACGTTGTGTTTGGTGGTA+AGG | - | Chr6:48932662-48932681 | None:intergenic | 40.0% |
| ! | AACGTTGTGTTTGGTGGTAA+GGG | - | Chr6:48932661-48932680 | None:intergenic | 40.0% |
| ! | AACTCGGTTTGTTTCAAGGT+TGG | + | Chr6:48933343-48933362 | MsG0680032758.01.T01:CDS | 40.0% |
| ! | GAAGAAGATGGTGGTTGTTA+TGG | - | Chr6:48932310-48932329 | None:intergenic | 40.0% |
| ! | GATGACGTTGTTGATGAAGT+TGG | - | Chr6:48933046-48933065 | None:intergenic | 40.0% |
| ! | GGAAAACTCGGTTTGTTTCA+AGG | + | Chr6:48933339-48933358 | MsG0680032758.01.T01:CDS | 40.0% |
| ! | GTTGTTGTTGTTGTTGGTGT+TGG | - | Chr6:48932349-48932368 | None:intergenic | 40.0% |
| ! | TATTTTACCGGACATGGTCA+TGG | - | Chr6:48932810-48932829 | None:intergenic | 40.0% |
| ! | TTCCGATGAAGCGATTTTGT+TGG | - | Chr6:48932409-48932428 | None:intergenic | 40.0% |
| ! | TTTTGTTGGATCTGTGAGGA+AGG | - | Chr6:48932395-48932414 | None:intergenic | 40.0% |
| !! | ACAACAGGTGGATTTTCAAC+CGG | - | Chr6:48933271-48933290 | None:intergenic | 40.0% |
| !! | GTTGTTGGTTGATGAAGAAG+AGG | - | Chr6:48932692-48932711 | None:intergenic | 40.0% |
| !!! | TCGGCAACATTTTGACTCAT+TGG | - | Chr6:48934063-48934082 | None:intergenic | 40.0% |
| AACAATTCCGCAACAACAGG+TGG | - | Chr6:48933283-48933302 | None:intergenic | 45.0% | |
| ATCAGAATCTAATTGGGCCC+GGG | + | Chr6:48932963-48932982 | MsG0680032758.01.T01:CDS | 45.0% | |
| ATGGTGGTTGTTATGGTGGT+TGG | - | Chr6:48932303-48932322 | None:intergenic | 45.0% | |
| CAAGCGGAGAAGCTAAGAAT+TGG | + | Chr6:48933592-48933611 | MsG0680032758.01.T01:CDS | 45.0% | |
| CACCTAAACGTTGTGTTTGG+TGG | - | Chr6:48932667-48932686 | None:intergenic | 45.0% | |
| CCTGTTGTTGCGGAATTGTT+CGG | + | Chr6:48933283-48933302 | MsG0680032758.01.T01:CDS | 45.0% | |
| CTCCTTCCTCAATCTTGACT+CGG | - | Chr6:48933927-48933946 | None:intergenic | 45.0% | |
| CTCGAAGATAACGACGAAGA+AGG | + | Chr6:48932890-48932909 | MsG0680032758.01.T01:CDS | 45.0% | |
| CTGTTGTTGCGGAATTGTTC+GGG | + | Chr6:48933284-48933303 | MsG0680032758.01.T01:CDS | 45.0% | |
| GATGAATTCGGATCAACGGT+TGG | + | Chr6:48933207-48933226 | MsG0680032758.01.T01:CDS | 45.0% | |
| GCTGCAAATGCGATTTCAGA+AGG | + | Chr6:48933124-48933143 | MsG0680032758.01.T01:CDS | 45.0% | |
| GGTTCAAACGGTTCAACAAC+CGG | + | Chr6:48932778-48932797 | MsG0680032758.01.T01:CDS | 45.0% | |
| GGTTGTTGAACCGTTTGAAC+CGG | - | Chr6:48932779-48932798 | None:intergenic | 45.0% | |
| TAACGAGTCGCGAGTTAACT+CGG | + | Chr6:48934113-48934132 | MsG0680032758.01.T01:CDS | 45.0% | |
| TCAACGGTTGGCGAATTTCA+TGG | + | Chr6:48933219-48933238 | MsG0680032758.01.T01:CDS | 45.0% | |
| TCAAGCACAAGCTCAGAAAC+TGG | + | Chr6:48933009-48933028 | MsG0680032758.01.T01:CDS | 45.0% | |
| TCCGTTGACACACTTTCATC+CGG | - | Chr6:48933739-48933758 | None:intergenic | 45.0% | |
| TGAGATGTTGAGGCTTCAAG+CGG | + | Chr6:48933576-48933595 | MsG0680032758.01.T01:CDS | 45.0% | |
| TGTTGGGTACGGTAAAGAGA+AGG | - | Chr6:48932332-48932351 | None:intergenic | 45.0% | |
| TTGGATGGGAAGAACACTCA+CGG | + | Chr6:48934176-48934195 | MsG0680032758.01.T01:CDS | 45.0% | |
| ! | CTCAGTTCAACCGGTTCAAA+CGG | + | Chr6:48932766-48932785 | MsG0680032758.01.T01:CDS | 45.0% |
| ! | GAAGATGGTGGTTGTTATGG+TGG | - | Chr6:48932307-48932326 | None:intergenic | 45.0% |
| ! | GAAGCGGTTGTTGTTGTTGT+TGG | - | Chr6:48932355-48932374 | None:intergenic | 45.0% |
| ! | GCGATTTTGTTGGATCTGTG+AGG | - | Chr6:48932399-48932418 | None:intergenic | 45.0% |
| ! | GTTGTTATGGTGGTTGGTTG+TGG | - | Chr6:48932297-48932316 | None:intergenic | 45.0% |
| ! | TCCGGATGAAAGTGTGTCAA+CGG | + | Chr6:48933735-48933754 | MsG0680032758.01.T01:CDS | 45.0% |
| ! | TGAGTCGACTCAGTTGTTGT+TGG | + | Chr6:48933318-48933337 | MsG0680032758.01.T01:CDS | 45.0% |
| ! | TGTAACTTGGTGGCTTGTGA+AGG | + | Chr6:48933961-48933980 | MsG0680032758.01.T01:CDS | 45.0% |
| !! | GAGTTGACTCGCGAGTTATT+GGG | + | Chr6:48933658-48933677 | MsG0680032758.01.T01:CDS | 45.0% |
| !! | GTCGAAAGGTGTGAGGTTTT+TGG | + | Chr6:48933994-48934013 | MsG0680032758.01.T01:CDS | 45.0% |
| !! | GTTGTTGTTGGTGTTGGGTA+CGG | - | Chr6:48932343-48932362 | None:intergenic | 45.0% |
| !! | TTCCTCAATCTTGACTCGGT+CGG | - | Chr6:48933923-48933942 | None:intergenic | 45.0% |
| !! | TTGTAATACCGCGCCGTTTT+TGG | + | Chr6:48933837-48933856 | MsG0680032758.01.T01:CDS | 45.0% |
| !!! | GGTGTGAGGTTTTTGGCAAA+TGG | + | Chr6:48934001-48934020 | MsG0680032758.01.T01:CDS | 45.0% |
| AACGAGTCGCGAGTTAACTC+GGG | + | Chr6:48934114-48934133 | MsG0680032758.01.T01:CDS | 50.0% | |
| AAGGTAGGGATCGTGTCGAA+AGG | + | Chr6:48933980-48933999 | MsG0680032758.01.T01:CDS | 50.0% | |
| CCGAACAATTCCGCAACAAC+AGG | - | Chr6:48933286-48933305 | None:intergenic | 50.0% | |
| CTCGACCGAGTCACATAAAG+CGG | - | Chr6:48933893-48933912 | None:intergenic | 50.0% | |
| GAAGTTGAAGGTTGTTGCGG+TGG | + | Chr6:48933516-48933535 | MsG0680032758.01.T01:CDS | 50.0% | |
| GACATGGTCATGGTTTGAGC+CGG | - | Chr6:48932800-48932819 | None:intergenic | 50.0% | |
| GACCGAGTCAAGATTGAGGA+AGG | + | Chr6:48933922-48933941 | MsG0680032758.01.T01:CDS | 50.0% | |
| GAGTCGCGACTTAATCGACT+CGG | - | Chr6:48934082-48934101 | None:intergenic | 50.0% | |
| GCGTGAGGGATTGAAGTTGA+AGG | + | Chr6:48933504-48933523 | MsG0680032758.01.T01:CDS | 50.0% | |
| GCTCAAACCATGACCATGTC+CGG | + | Chr6:48932800-48932819 | MsG0680032758.01.T01:CDS | 50.0% | |
| GGCTGCAAATCTCGCAATTC+TGG | + | Chr6:48933372-48933391 | MsG0680032758.01.T01:CDS | 50.0% | |
| TAGCTGTGGGTGAGATGTTG+AGG | + | Chr6:48933566-48933585 | MsG0680032758.01.T01:CDS | 50.0% | |
| TCCACAACAACCACAACACG+CGG | - | Chr6:48933805-48933824 | None:intergenic | 50.0% | |
| TCTGCAACACGCGCCAAAAA+CGG | - | Chr6:48933853-48933872 | None:intergenic | 50.0% | |
| TTCCGACCGAGTCAAGATTG+AGG | + | Chr6:48933918-48933937 | MsG0680032758.01.T01:CDS | 50.0% | |
| ! | ACTTGGTGGCTTGTGAAGGT+AGG | + | Chr6:48933965-48933984 | MsG0680032758.01.T01:CDS | 50.0% |
| ! | CTTGGTGGCTTGTGAAGGTA+GGG | + | Chr6:48933966-48933985 | MsG0680032758.01.T01:CDS | 50.0% |
| !! | CGAGTTGACTCGCGAGTTAT+TGG | + | Chr6:48933657-48933676 | MsG0680032758.01.T01:CDS | 50.0% |
| !! | TGGTGAGAGCGTTGAAATCG+AGG | + | Chr6:48933239-48933258 | MsG0680032758.01.T01:CDS | 50.0% |
| !! | TTTTTGGCAAATGGCGCGCA+AGG | + | Chr6:48934010-48934029 | MsG0680032758.01.T01:CDS | 50.0% |
| ATGGCGCGCAAGGATGAGTA+TGG | + | Chr6:48934020-48934039 | MsG0680032758.01.T01:CDS | 55.0% | |
| CACTCACGGTTGCTTCTGCT+TGG | + | Chr6:48934190-48934209 | MsG0680032758.01.T01:CDS | 55.0% | |
| GTTGAAGGTTGTTGCGGTGG+CGG | + | Chr6:48933519-48933538 | MsG0680032758.01.T01:CDS | 55.0% | |
| TCATCGCCGGGTTTCAATGC+CGG | + | Chr6:48932206-48932225 | MsG0680032758.01.T01:CDS | 55.0% | |
| ! | CGTCGCAAAAGTGTGTCACG+TGG | - | Chr6:48933766-48933785 | None:intergenic | 55.0% |
| ! | GGATCGTGTCGAAAGGTGTG+AGG | + | Chr6:48933987-48934006 | MsG0680032758.01.T01:CDS | 55.0% |
| ! | GGCTCGTCGGAGTTTTTCTC+CGG | + | Chr6:48932239-48932258 | MsG0680032758.01.T01:CDS | 55.0% |
| !! | CGCTTTATGTGACTCGGTCG+AGG | + | Chr6:48933891-48933910 | MsG0680032758.01.T01:CDS | 55.0% |
| AACACGCGCCAAAAACGGCG+CGG | - | Chr6:48933848-48933867 | None:intergenic | 60.0% | |
| AATCTAATTGGGCCCGGGCC+CGG | + | Chr6:48932968-48932987 | MsG0680032758.01.T01:CDS | 60.0% | |
| CGCGCAAGGATGAGTATGGC+GGG | + | Chr6:48934024-48934043 | MsG0680032758.01.T01:CDS | 60.0% | |
| GCCGCGTGTTGTGGTTGTTG+TGG | + | Chr6:48933801-48933820 | MsG0680032758.01.T01:CDS | 60.0% | |
| GCGCAAGGATGAGTATGGCG+GGG | + | Chr6:48934025-48934044 | MsG0680032758.01.T01:CDS | 60.0% | |
| GCGCGCAAGGATGAGTATGG+CGG | + | Chr6:48934023-48934042 | MsG0680032758.01.T01:CDS | 60.0% | |
| GCGCGTGTTGCAGAGTCATG+GGG | + | Chr6:48933859-48933878 | MsG0680032758.01.T01:CDS | 60.0% | |
| GCTTGTGCTTGAGCCTGACC+AGG | - | Chr6:48933001-48933020 | None:intergenic | 60.0% | |
| GGCGCGTGTTGCAGAGTCAT+GGG | + | Chr6:48933858-48933877 | MsG0680032758.01.T01:CDS | 60.0% | |
| TGGCGCGTGTTGCAGAGTCA+TGG | + | Chr6:48933857-48933876 | MsG0680032758.01.T01:CDS | 60.0% | |
| !! | GTTGTTGCGGTGGCGGAGAA+CGG | + | Chr6:48933526-48933545 | MsG0680032758.01.T01:CDS | 60.0% |
| ATCTAATTGGGCCCGGGCCC+GGG | + | Chr6:48932969-48932988 | MsG0680032758.01.T01:CDS | 65.0% | |
| GAAACTCGCGCCGCGTGTTG+TGG | + | Chr6:48933792-48933811 | MsG0680032758.01.T01:CDS | 65.0% | |
| TCACGCGCTCAAAGCGCGTG+AGG | + | Chr6:48933477-48933496 | MsG0680032758.01.T01:CDS | 65.0% | |
| TCGCCGGGTTTCAATGCCGG+CGG | + | Chr6:48932209-48932228 | MsG0680032758.01.T01:CDS | 65.0% | |
| TTCAATGCCGGCGGTGGTGC+TGG | + | Chr6:48932218-48932237 | MsG0680032758.01.T01:CDS | 65.0% | |
| ! | CCACCGCCGGCATTGAAACC+CGG | - | Chr6:48932215-48932234 | None:intergenic | 65.0% |
| CCGGGTTTCAATGCCGGCGG+TGG | + | Chr6:48932212-48932231 | MsG0680032758.01.T01:CDS | 70.0% | |
| CGCGCTCAAAGCGCGTGAGG+TGG | + | Chr6:48933480-48933499 | MsG0680032758.01.T01:CDS | 70.0% | |
| GCTTGAGCCTGACCAGGCCC+AGG | - | Chr6:48932995-48933014 | None:intergenic | 70.0% | |
| !! | GTTGCGGTGGCGGAGAACGG+CGG | + | Chr6:48933529-48933548 | MsG0680032758.01.T01:CDS | 70.0% |
| AGCCTGACCAGGCCCAGGCC+CGG | - | Chr6:48932990-48933009 | None:intergenic | 75.0% | |
| AGCGCGTGAGGTGGCGCGTG+AGG | + | Chr6:48933489-48933508 | MsG0680032758.01.T01:CDS | 75.0% | |
| CGACGAGCCAGCACCACCGC+CGG | - | Chr6:48932228-48932247 | None:intergenic | 75.0% | |
| GCGCGTGAGGTGGCGCGTGA+GGG | + | Chr6:48933490-48933509 | MsG0680032758.01.T01:CDS | 75.0% | |
| !! | CGGCGGTGGTGCTGGCTCGT+CGG | + | Chr6:48932226-48932245 | MsG0680032758.01.T01:CDS | 75.0% |
| ! | GCCTGACCAGGCCCAGGCCC+GGG | - | Chr6:48932989-48933008 | None:intergenic | 80.0% |
| ! | ACCAGGCCCAGGCCCGGGCC+CGG | - | Chr6:48932984-48933003 | None:intergenic | 85.0% |
| ! | ATTGGGCCCGGGCCCGGGCC+TGG | + | Chr6:48932974-48932993 | MsG0680032758.01.T01:CDS | 85.0% |
| ! | GCCCGGGCCTGGGCCTGGTC+AGG | + | Chr6:48932985-48933004 | MsG0680032758.01.T01:CDS | 85.0% |
| ! | TTGGGCCCGGGCCCGGGCCT+GGG | + | Chr6:48932975-48932994 | MsG0680032758.01.T01:CDS | 85.0% |
| ! | CCAGGCCCAGGCCCGGGCCC+GGG | - | Chr6:48932983-48933002 | None:intergenic | 90.0% |
| ! | CCCGGGCCCGGGCCTGGGCC+TGG | + | Chr6:48932980-48932999 | MsG0680032758.01.T01:CDS | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 48932203 | 48934218 | 48932203 | ID=MsG0680032758.01;Name=MsG0680032758.01 |
| Chr6 | mRNA | 48932203 | 48934218 | 48932203 | ID=MsG0680032758.01.T01;Parent=MsG0680032758.01;Name=MsG0680032758.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|671 |
| Chr6 | exon | 48932203 | 48934218 | 48932203 | ID=MsG0680032758.01.T01:exon:16999;Parent=MsG0680032758.01.T01 |
| Chr6 | CDS | 48932203 | 48934218 | 48932203 | ID=MsG0680032758.01.T01:cds;Parent=MsG0680032758.01.T01 |
| Gene Sequence |
| Protein sequence |
