AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023421.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023421.01.T01 MTR_8g092670 72.671 161 16 6 136 296 17 149 7.88e-55 175
MsG0480023421.01.T01 MTR_8g092675 97.436 78 2 0 1 78 1 78 3.79e-49 159
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 41 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAGCTGCAATATCATTT+TGG 0.194942 4:+85022299 None:intergenic
ACCTGTTCTGGTTCAGGTTC+AGG 0.218393 4:+85026322 None:intergenic
GTGTCTTCTTTAACCTGTTC+TGG 0.244428 4:+85026310 None:intergenic
TCTTTAACCTGTTCTGGTTC+AGG 0.251241 4:+85026316 None:intergenic
ACAAGAATCTACAGTTATTA+AGG 0.256810 4:-85022476 MsG0480023421.01.T01:CDS
TCTGGTTCAGGTTCAGGTTC+AGG 0.293929 4:+85026328 None:intergenic
GTAGATTCTTGTTCTGTAGA+TGG 0.312343 4:+85022487 None:intergenic
TTCACAACTGTTTCTTCAGC+TGG 0.359946 4:+85022328 None:intergenic
GGAGATTCATGTTTCAAAGT+TGG 0.408662 4:+85022553 None:intergenic
ACCTGAACCTGAACCAGAAC+AGG 0.429850 4:-85026323 MsG0480023421.01.T01:CDS
TTCTGTCTTCACAATCTCTT+CGG 0.442450 4:+85022402 None:intergenic
TTCTCTTCTATGCTAGATGT+TGG 0.446295 4:+85022070 None:intergenic
ATTAGAAACAGAGAAACCTT+TGG 0.449166 4:-85022596 MsG0480023421.01.T01:CDS
AAACCAAAGGTTACGAAGGA+TGG 0.459100 4:-85026370 MsG0480023421.01.T01:CDS
ATCACTTTCTCCGCAGGTGG+AGG 0.497231 4:+85022142 None:intergenic
ATCTGTGGAGAACAAAATAG+TGG 0.502395 4:-85022095 MsG0480023421.01.T01:CDS
AAGCTTGTTGTTCAACAAAG+AGG 0.514250 4:-85026176 MsG0480023421.01.T01:intron
GGATTAAGAGATAGAAGCCT+TGG 0.514412 4:+85022027 None:intergenic
AGTTATTAAGGTTGATGTTG+AGG 0.515319 4:-85022464 MsG0480023421.01.T01:CDS
AACCAAAGGTTACGAAGGAT+GGG 0.516776 4:-85026369 MsG0480023421.01.T01:CDS
TCAATCACTTTCTCCGCAGG+TGG 0.530836 4:+85022139 None:intergenic
ACTTCAATCACTTTCTCCGC+AGG 0.536439 4:+85022136 None:intergenic
TTTAACAAATGCAGAATCTG+TGG 0.554816 4:-85022110 MsG0480023421.01.T01:CDS
AGAAGGTGAGAAAGCTTCAG+AGG 0.560763 4:-85022245 MsG0480023421.01.T01:CDS
AGAAACAGAGAAACCTTTGG+AGG 0.576894 4:-85022593 MsG0480023421.01.T01:CDS
GACTATTCTCATTGAAAATG+TGG 0.591672 4:-85022170 MsG0480023421.01.T01:CDS
ACCAAAGGTTACGAAGGATG+GGG 0.594184 4:-85026368 MsG0480023421.01.T01:CDS
TCATGTAGAGCATATATCCA+AGG 0.613863 4:-85022044 MsG0480023421.01.T01:CDS
GAATGAAGATACAATTACAA+AGG 0.619093 4:-85022671 MsG0480023421.01.T01:CDS
CACTGTTGAAACCAAAGTGG+AGG 0.620060 4:-85026290 MsG0480023421.01.T01:CDS
TATTCTCATTGAAAATGTGG+TGG 0.622958 4:-85022167 MsG0480023421.01.T01:CDS
TGCGGAGAAAGTGATTGAAG+TGG 0.637663 4:-85022134 MsG0480023421.01.T01:CDS
AACTAAACCAAAGGTTACGA+AGG 0.648382 4:-85026374 MsG0480023421.01.T01:CDS
ACAGATTCAGAAACACAAGA+AGG 0.653137 4:-85022262 MsG0480023421.01.T01:CDS
GGGTTGTGCAACTAAACCAA+AGG 0.654419 4:-85026383 MsG0480023421.01.T01:CDS
TGTGGTGGTTCCTCCACCTG+CGG 0.658290 4:-85022152 MsG0480023421.01.T01:CDS
AGACACTGTTGAAACCAAAG+TGG 0.670371 4:-85026293 MsG0480023421.01.T01:CDS
CAAGAGCAATTGTTGCAGAG+TGG 0.680159 4:-85026259 MsG0480023421.01.T01:CDS
CCAAAGGTTACGAAGGATGG+GGG 0.695094 4:-85026367 MsG0480023421.01.T01:CDS
TATTGCAGCTGAAGTAACTG+TGG 0.741891 4:-85022290 MsG0480023421.01.T01:CDS
TGATTGAAAGAACCAATGGG+GGG 0.787943 4:-85026403 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAATTTAAAAATATCAAA+CGG - Chr4:85024687-85024706 MsG0480023421.01.T01:intron 10.0%
!!! CATTATTTATTTGTTAAAAA+GGG + Chr4:85023820-85023839 None:intergenic 10.0%
!!! TCATTATTTATTTGTTAAAA+AGG + Chr4:85023821-85023840 None:intergenic 10.0%
!!! TCATTTTATTAAAATAGATA+TGG - Chr4:85025121-85025140 MsG0480023421.01.T01:intron 10.0%
!! AAAAAAAATGTAAACAGATA+TGG + Chr4:85024935-85024954 None:intergenic 15.0%
!! AAAAAAATGTAAACAGATAT+GGG + Chr4:85024934-85024953 None:intergenic 15.0%
!! AAATAAAAGGAATATTATCA+GGG + Chr4:85024102-85024121 None:intergenic 15.0%
!! TCTAACAAAAATTAAAACAT+TGG - Chr4:85024403-85024422 MsG0480023421.01.T01:intron 15.0%
!! TTTATTAAAATAGATATGGT+TGG - Chr4:85025125-85025144 MsG0480023421.01.T01:intron 15.0%
!!! AACCAATTAAATTTGTTATT+TGG - Chr4:85023975-85023994 MsG0480023421.01.T01:intron 15.0%
!! AACAAAAATTAAAACATTGG+CGG - Chr4:85024406-85024425 MsG0480023421.01.T01:intron 20.0%
!! ATATGAAGTCACAATATTTA+AGG + Chr4:85023204-85023223 None:intergenic 20.0%
!! CATAAATTAAATGTAATGCA+TGG - Chr4:85024242-85024261 MsG0480023421.01.T01:intron 20.0%
!! GAAATAAAAGGAATATTATC+AGG + Chr4:85024103-85024122 None:intergenic 20.0%
!! GAAATTCTTAAAATTGATCT+TGG - Chr4:85022685-85022704 MsG0480023421.01.T01:intron 20.0%
!! GTATGAAAATGAGTTTATAT+GGG - Chr4:85022952-85022971 MsG0480023421.01.T01:intron 20.0%
!! TTAGTTGTTGAACTATAAAA+TGG + Chr4:85025221-85025240 None:intergenic 20.0%
!!! ACTAAAATTTTTTCATTCAG+AGG - Chr4:85025547-85025566 MsG0480023421.01.T01:intron 20.0%
!!! CAAACCTTTTTTTTTTTCAT+AGG - Chr4:85022386-85022405 MsG0480023421.01.T01:CDS 20.0%
!!! CAATTAAATTTGTTATTTGG+CGG - Chr4:85023978-85023997 MsG0480023421.01.T01:intron 20.0%
!!! GTTCAAATCACTTTTTAAAT+TGG - Chr4:85024660-85024679 MsG0480023421.01.T01:intron 20.0%
!!! GTTGTGAACTTTAATTATTT+TGG - Chr4:85023497-85023516 MsG0480023421.01.T01:intron 20.0%
!!! TTACTTAGAAGTCAATTTTA+AGG - Chr4:85025384-85025403 MsG0480023421.01.T01:intron 20.0%
!!! TTTGTTTTTTTCATTTTGAG+TGG + Chr4:85025776-85025795 None:intergenic 20.0%
! AAAATGTCCTAATGTATGTT+TGG - Chr4:85022523-85022542 MsG0480023421.01.T01:CDS 25.0%
! AAATGAAAAAAACAAAGCTG+AGG - Chr4:85025780-85025799 MsG0480023421.01.T01:intron 25.0%
! AACAAGTAATGTGATAAAAG+AGG + Chr4:85025012-85025031 None:intergenic 25.0%
! AACTCGTTTAAATGTATATG+TGG - Chr4:85022480-85022499 MsG0480023421.01.T01:CDS 25.0%
! ACAAAAGAAAAAATTCACCA+AGG + Chr4:85023353-85023372 None:intergenic 25.0%
! ACAAGAATCTACAGTTATTA+AGG - Chr4:85025942-85025961 MsG0480023421.01.T01:intron 25.0%
! AGAATCTTCGAAAACAAATT+AGG + Chr4:85023532-85023551 None:intergenic 25.0%
! CGCCAAATAACAAATTTAAT+TGG + Chr4:85023980-85023999 None:intergenic 25.0%
! GAATGAAGATACAATTACAA+AGG - Chr4:85025747-85025766 MsG0480023421.01.T01:intron 25.0%
! GGTATGAAAATGAGTTTATA+TGG - Chr4:85022951-85022970 MsG0480023421.01.T01:intron 25.0%
! GTAAATTTGTGAAGTTAACA+TGG + Chr4:85023312-85023331 None:intergenic 25.0%
! GTTAAAATGAGATTCATACA+TGG + Chr4:85025699-85025718 None:intergenic 25.0%
! GTTTAAATGTATATGTGGAT+TGG - Chr4:85022485-85022504 MsG0480023421.01.T01:CDS 25.0%
! GTTTGAATATGACTATAAGA+GGG - Chr4:85023777-85023796 MsG0480023421.01.T01:intron 25.0%
! TACCAAATTTGGGAAATAAA+AGG + Chr4:85024115-85024134 None:intergenic 25.0%
! TATAATAACGACAAGAAAAG+TGG + Chr4:85023875-85023894 None:intergenic 25.0%
! TGAAAATTTAGTAGACACAA+GGG - Chr4:85024475-85024494 MsG0480023421.01.T01:intron 25.0%
! TGTAGGATTATGAAACTAAA+TGG + Chr4:85023417-85023436 None:intergenic 25.0%
! TTGAAAATTTAGTAGACACA+AGG - Chr4:85024474-85024493 MsG0480023421.01.T01:intron 25.0%
! TTGAATCATTGACAAAGAAA+AGG - Chr4:85024182-85024201 MsG0480023421.01.T01:intron 25.0%
! TTTGAATATGACTATAAGAG+GGG - Chr4:85023778-85023797 MsG0480023421.01.T01:intron 25.0%
!! CGTGAACTTTTATCAAATAA+TGG - Chr4:85025162-85025181 MsG0480023421.01.T01:intron 25.0%
!! TATTGATATGAAGTATCCAT+CGG - Chr4:85025459-85025478 MsG0480023421.01.T01:intron 25.0%
!! TGGTAAAATAGTTTAAAGCA+GGG - Chr4:85022705-85022724 MsG0480023421.01.T01:intron 25.0%
!! TTGGTAAAATAGTTTAAAGC+AGG - Chr4:85022704-85022723 MsG0480023421.01.T01:intron 25.0%
!!! ACTTTTTCAACTACCAAATT+TGG + Chr4:85024126-85024145 None:intergenic 25.0%
!!! CTTTTTCAACTACCAAATTT+GGG + Chr4:85024125-85024144 None:intergenic 25.0%
!!! GAACTTTAATTATTTTGGCA+AGG - Chr4:85023502-85023521 MsG0480023421.01.T01:intron 25.0%
!!! GAAGTGTTTTATATGTTATG+TGG + Chr4:85023265-85023284 None:intergenic 25.0%
!!! GATGATTTTTCTAGTTTGAT+TGG + Chr4:85026225-85026244 None:intergenic 25.0%
!!! TCTCTATTTTTTGTGTATGT+TGG - Chr4:85022322-85022341 MsG0480023421.01.T01:CDS 25.0%
!!! TTCCTTTTATTTCCCAAATT+TGG - Chr4:85024110-85024129 MsG0480023421.01.T01:intron 25.0%
AAAACTGTTGTCCAAAAAAG+GGG + Chr4:85024442-85024461 None:intergenic 30.0%
AAAGTCATTACGACTAAACA+TGG + Chr4:85023178-85023197 None:intergenic 30.0%
AACCTTAATGGCAAGTAAAA+AGG - Chr4:85022422-85022441 MsG0480023421.01.T01:CDS 30.0%
AACGGTAACTAACTATTGTT+CGG - Chr4:85024705-85024724 MsG0480023421.01.T01:intron 30.0%
AATATCAGATTCTGACATCA+AGG + Chr4:85024860-85024879 None:intergenic 30.0%
AATGGTGTGTAATTAAGGAA+AGG - Chr4:85024015-85024034 MsG0480023421.01.T01:intron 30.0%
AATTCCTCCAAACATACATT+AGG + Chr4:85022533-85022552 None:intergenic 30.0%
AGATAGTAGATTGGAATGTT+TGG + Chr4:85024887-85024906 None:intergenic 30.0%
ATACACTCTCACTATTGATA+CGG - Chr4:85023053-85023072 MsG0480023421.01.T01:intron 30.0%
ATACATGGATAGAATTTGTG+TGG + Chr4:85025684-85025703 None:intergenic 30.0%
ATAGCGGTTAACAAAATCAA+TGG + Chr4:85023638-85023657 None:intergenic 30.0%
ATTAAGACAATTGCTAGAGT+AGG + Chr4:85023288-85023307 None:intergenic 30.0%
ATTAGAAACAGAGAAACCTT+TGG - Chr4:85025822-85025841 MsG0480023421.01.T01:intron 30.0%
ATTATATGATCACCCGATAT+GGG - Chr4:85022869-85022888 MsG0480023421.01.T01:intron 30.0%
CAAATAATGGTTGAGCTTAT+AGG - Chr4:85025175-85025194 MsG0480023421.01.T01:intron 30.0%
CGTTTGAATATGACTATAAG+AGG - Chr4:85023776-85023795 MsG0480023421.01.T01:intron 30.0%
CTCAATTAAGTTAGACTAGT+TGG + Chr4:85025343-85025362 None:intergenic 30.0%
GAAAACTGTTGTCCAAAAAA+GGG + Chr4:85024443-85024462 None:intergenic 30.0%
GAAAATTTAGTAGACACAAG+GGG - Chr4:85024476-85024495 MsG0480023421.01.T01:intron 30.0%
GACAATGCATAATACATACA+AGG + Chr4:85024575-85024594 None:intergenic 30.0%
GACTATTCTCATTGAAAATG+TGG - Chr4:85026248-85026267 MsG0480023421.01.T01:CDS 30.0%
GTTACAAACATCATGAATGA+TGG - Chr4:85023706-85023725 MsG0480023421.01.T01:intron 30.0%
TACATGGATAGAATTTGTGT+GGG + Chr4:85025683-85025702 None:intergenic 30.0%
TAGCGGTTAACAAAATCAAT+GGG + Chr4:85023637-85023656 None:intergenic 30.0%
TATTATATGATCACCCGATA+TGG - Chr4:85022868-85022887 MsG0480023421.01.T01:intron 30.0%
TATTCTCATTGAAAATGTGG+TGG - Chr4:85026251-85026270 MsG0480023421.01.T01:CDS 30.0%
TGAAAACTGTTGTCCAAAAA+AGG + Chr4:85024444-85024463 None:intergenic 30.0%
TGATGTCAGAATCTGATATT+GGG - Chr4:85024860-85024879 MsG0480023421.01.T01:intron 30.0%
TGATTACTGTCAATTGTCTT+AGG - Chr4:85024777-85024796 MsG0480023421.01.T01:intron 30.0%
TGTAGTAGAATGTCAATTCT+TGG - Chr4:85022816-85022835 MsG0480023421.01.T01:intron 30.0%
TTAAGACAATTGCTAGAGTA+GGG + Chr4:85023287-85023306 None:intergenic 30.0%
TTGATGTCAGAATCTGATAT+TGG - Chr4:85024859-85024878 MsG0480023421.01.T01:intron 30.0%
TTTAACAAATGCAGAATCTG+TGG - Chr4:85026308-85026327 MsG0480023421.01.T01:CDS 30.0%
TTTCATAATCCTACAAACAG+TGG - Chr4:85023422-85023441 MsG0480023421.01.T01:intron 30.0%
TTTGTCGAAACAAACTAATG+AGG - Chr4:85023143-85023162 MsG0480023421.01.T01:intron 30.0%
! ACAAGAAAAGTGGTTTTCTT+GGG + Chr4:85023865-85023884 None:intergenic 30.0%
! CAAATTTTTATGCTGCATAG+AGG - Chr4:85022348-85022367 MsG0480023421.01.T01:CDS 30.0%
! CACATTCCAAATTCTAAGAA+GGG - Chr4:85022740-85022759 MsG0480023421.01.T01:intron 30.0%
! GCGTTGAAATGTAACTTTTA+TGG + Chr4:85023098-85023117 None:intergenic 30.0%
! GGTAAAATAGTTTAAAGCAG+GGG - Chr4:85022706-85022725 MsG0480023421.01.T01:intron 30.0%
!! ACTAGTAAGTTGATTGATCA+TGG + Chr4:85025304-85025323 None:intergenic 30.0%
!! AGTTATTAAGGTTGATGTTG+AGG - Chr4:85025954-85025973 MsG0480023421.01.T01:intron 30.0%
!! AGTTGCATGATTTGTTGATT+TGG - Chr4:85024318-85024337 MsG0480023421.01.T01:intron 30.0%
!! ATCCTCTCTTTTTGTTTGTA+AGG - Chr4:85025064-85025083 MsG0480023421.01.T01:intron 30.0%
!! GTGATTTGATTTTGCAATGA+AGG + Chr4:85025985-85026004 None:intergenic 30.0%
!! TTTTATGGATTAATGCCGAT+TGG + Chr4:85023083-85023102 None:intergenic 30.0%
!! TTTTCTCATTTTTGTGAGTG+TGG - Chr4:85023388-85023407 MsG0480023421.01.T01:intron 30.0%
!!! AATTGCTCTTTTTTTTGTGG+TGG - Chr4:85024530-85024549 MsG0480023421.01.T01:intron 30.0%
!!! CACTTTACAAACTAGTTTTG+TGG - Chr4:85022987-85023006 MsG0480023421.01.T01:intron 30.0%
!!! GAAAAAATTTTAGTTGCGAG+AGG + Chr4:85025541-85025560 None:intergenic 30.0%
!!! GACAATTGCTCTTTTTTTTG+TGG - Chr4:85024527-85024546 MsG0480023421.01.T01:intron 30.0%
!!! TTGTTTTTAGTTTCCTGAGT+TGG + Chr4:85025907-85025926 None:intergenic 30.0%
AACTAAACCAAAGGTTACGA+AGG - Chr4:85022044-85022063 MsG0480023421.01.T01:CDS 35.0%
ACAGATTCAGAAACACAAGA+AGG - Chr4:85026156-85026175 MsG0480023421.01.T01:intron 35.0%
ACATGAATCTCCAAAAACAG+AGG - Chr4:85025876-85025895 MsG0480023421.01.T01:intron 35.0%
ACCTAAGACAGTTGATCTAT+AGG + Chr4:85024758-85024777 None:intergenic 35.0%
ACTAAATGCATGGCAAACAA+AGG - Chr4:85023571-85023590 MsG0480023421.01.T01:intron 35.0%
ACTACTGGTAGTAAGGAATA+TGG - Chr4:85024802-85024821 MsG0480023421.01.T01:intron 35.0%
AGATGGTAGGATAAATATGC+TGG + Chr4:85024834-85024853 None:intergenic 35.0%
AGCATATTTATCCTACCATC+TGG - Chr4:85024833-85024852 MsG0480023421.01.T01:intron 35.0%
AGCGGTTAACAAAATCAATG+GGG + Chr4:85023636-85023655 None:intergenic 35.0%
ATCTATTTGATCACCCACTA+TGG - Chr4:85022779-85022798 MsG0480023421.01.T01:intron 35.0%
ATCTGTGGAGAACAAAATAG+TGG - Chr4:85026323-85026342 MsG0480023421.01.T01:CDS 35.0%
ATGTCCTAATGTATGTTTGG+AGG - Chr4:85022526-85022545 MsG0480023421.01.T01:CDS 35.0%
ATTCATGATGTTTGTAACCG+TGG + Chr4:85023704-85023723 None:intergenic 35.0%
CAATTGTCTTAGGTAACTAC+TGG - Chr4:85024787-85024806 MsG0480023421.01.T01:intron 35.0%
CATAATACATACAAGGTACG+AGG + Chr4:85024568-85024587 None:intergenic 35.0%
CATTAAGGTTTGTATCAAGG+GGG + Chr4:85022412-85022431 None:intergenic 35.0%
CCATTAAGGTTTGTATCAAG+GGG + Chr4:85022413-85022432 None:intergenic 35.0%
CTACTGGTAGTAAGGAATAT+GGG - Chr4:85024803-85024822 MsG0480023421.01.T01:intron 35.0%
GACCTTACAAACAAAAAGAG+AGG + Chr4:85025069-85025088 None:intergenic 35.0%
GCATATTTATCCTACCATCT+GGG - Chr4:85024834-85024853 MsG0480023421.01.T01:intron 35.0%
GCCATTAAGGTTTGTATCAA+GGG + Chr4:85022414-85022433 None:intergenic 35.0%
GGAGATTCATGTTTCAAAGT+TGG + Chr4:85025868-85025887 None:intergenic 35.0%
GGGGCCTATGAAAAAAAAAA+AGG + Chr4:85022393-85022412 None:intergenic 35.0%
GTAGATTCTTGTTCTGTAGA+TGG + Chr4:85025934-85025953 None:intergenic 35.0%
TACATCATGCACTAAATGCA+TGG - Chr4:85023561-85023580 MsG0480023421.01.T01:intron 35.0%
TACCCAACAAAAGTTTACCT+TGG - Chr4:85023333-85023352 MsG0480023421.01.T01:intron 35.0%
TATTGATACGGTAGTCCAAT+CGG - Chr4:85023065-85023084 MsG0480023421.01.T01:intron 35.0%
TCATGTAGAGCATATATCCA+AGG - Chr4:85026374-85026393 MsG0480023421.01.T01:CDS 35.0%
TCTATTTGATCACCCACTAT+GGG - Chr4:85022780-85022799 MsG0480023421.01.T01:intron 35.0%
TCTCATCCCTTCTTAGAATT+TGG + Chr4:85022749-85022768 None:intergenic 35.0%
TGCCATTAAGGTTTGTATCA+AGG + Chr4:85022415-85022434 None:intergenic 35.0%
TTAACAAAATCAATGGGGGT+GGG + Chr4:85023631-85023650 None:intergenic 35.0%
TTAATTATTGACGAAGCCGA+TGG + Chr4:85025478-85025497 None:intergenic 35.0%
TTAGGTAACTACTGGTAGTA+AGG - Chr4:85024795-85024814 MsG0480023421.01.T01:intron 35.0%
TTCATGATGTTTGTAACCGT+GGG + Chr4:85023703-85023722 None:intergenic 35.0%
TTCTCTTCTATGCTAGATGT+TGG + Chr4:85026351-85026370 None:intergenic 35.0%
TTTAGTAGATGCCAATGCTT+AGG - Chr4:85022902-85022921 MsG0480023421.01.T01:intron 35.0%
! AAGAAAAGTGGTTTTCTTGG+GGG + Chr4:85023863-85023882 None:intergenic 35.0%
! ATATGGGTTATTGTCCTCTA+GGG + Chr4:85024918-85024937 None:intergenic 35.0%
! ATTTTTATGCTGCATAGAGG+AGG - Chr4:85022351-85022370 MsG0480023421.01.T01:CDS 35.0%
! CAAGAAAAGTGGTTTTCTTG+GGG + Chr4:85023864-85023883 None:intergenic 35.0%
! CACCAAGGTAAACTTTTGTT+GGG + Chr4:85023338-85023357 None:intergenic 35.0%
! CTTCAGCTGCAATATCATTT+TGG + Chr4:85026122-85026141 None:intergenic 35.0%
! GAAGTTTTCTTAGCTTCTTC+TGG + Chr4:85026045-85026064 None:intergenic 35.0%
! GAATCGAACATGAGATTTTG+AGG - Chr4:85022609-85022628 MsG0480023421.01.T01:CDS 35.0%
! GACAAGAAAAGTGGTTTTCT+TGG + Chr4:85023866-85023885 None:intergenic 35.0%
! GACTTTTTGTACCCCTTTTT+TGG - Chr4:85024428-85024447 MsG0480023421.01.T01:intron 35.0%
! GAGGTAATGGTGTGTAATTA+AGG - Chr4:85024010-85024029 MsG0480023421.01.T01:intron 35.0%
! GCACATTCCAAATTCTAAGA+AGG - Chr4:85022739-85022758 MsG0480023421.01.T01:intron 35.0%
! GTCCTTTTTACTTGCCATTA+AGG + Chr4:85022427-85022446 None:intergenic 35.0%
! TCACCAAGGTAAACTTTTGT+TGG + Chr4:85023339-85023358 None:intergenic 35.0%
! TGCTCTTAGCATCTTTTCTT+AGG + Chr4:85024295-85024314 None:intergenic 35.0%
!! AAGCTTGTTGTTCAACAAAG+AGG - Chr4:85022242-85022261 MsG0480023421.01.T01:CDS 35.0%
!! GGGCGAGTTGATAAAATATA+AGG - Chr4:85022930-85022949 MsG0480023421.01.T01:intron 35.0%
!!! ATGTTTTTAGCATCCTCCAA+AGG + Chr4:85025841-85025860 None:intergenic 35.0%
!!! GAGGTTCAAACTCTTGTTTT+AGG - Chr4:85025566-85025585 MsG0480023421.01.T01:intron 35.0%
!!! GTTGGTTTTTCCTCTGTTTT+TGG + Chr4:85025889-85025908 None:intergenic 35.0%
AAACATGAGTGATGAGTGGT+AGG - Chr4:85024209-85024228 MsG0480023421.01.T01:intron 40.0%
AAACATGAGTGGTCCCATAT+CGG + Chr4:85022885-85022904 None:intergenic 40.0%
AAACCAAAGGTTACGAAGGA+TGG - Chr4:85022048-85022067 MsG0480023421.01.T01:CDS 40.0%
AACAGAGGAAAAACCAACTC+AGG - Chr4:85025891-85025910 MsG0480023421.01.T01:intron 40.0%
AACCAAAGGTTACGAAGGAT+GGG - Chr4:85022049-85022068 MsG0480023421.01.T01:CDS 40.0%
AACTTAAGTGACCCCATAGT+GGG + Chr4:85022795-85022814 None:intergenic 40.0%
ACTTGTCTGACCACCTTTAA+TGG - Chr4:85025511-85025530 MsG0480023421.01.T01:intron 40.0%
AGAAACAGAGAAACCTTTGG+AGG - Chr4:85025825-85025844 MsG0480023421.01.T01:intron 40.0%
AGACACTGTTGAAACCAAAG+TGG - Chr4:85022125-85022144 MsG0480023421.01.T01:CDS 40.0%
AGCTAAACATGAGTGATGAG+TGG - Chr4:85024205-85024224 MsG0480023421.01.T01:intron 40.0%
ATTCTCCGTGTCAATTTGGA+TGG + Chr4:85022593-85022612 None:intergenic 40.0%
CCCCTTGATACAAACCTTAA+TGG - Chr4:85022410-85022429 MsG0480023421.01.T01:CDS 40.0%
CTAACCCATCCAAATTGACA+CGG - Chr4:85022585-85022604 MsG0480023421.01.T01:CDS 40.0%
CTATTTGATCACCCACTATG+GGG - Chr4:85022781-85022800 MsG0480023421.01.T01:intron 40.0%
CTTGTCTGACCACCTTTAAT+GGG - Chr4:85025512-85025531 MsG0480023421.01.T01:intron 40.0%
GAATATGACTATAAGAGGGG+TGG - Chr4:85023781-85023800 MsG0480023421.01.T01:intron 40.0%
GAGCATGAGAACAATGATAG+CGG + Chr4:85023654-85023673 None:intergenic 40.0%
GATGGCAAAGTGCAAACAAA+AGG - Chr4:85023724-85023743 MsG0480023421.01.T01:intron 40.0%
GATTTGGAGAGATAGTGAGA+GGG - Chr4:85024334-85024353 MsG0480023421.01.T01:intron 40.0%
GCCTATAGATCAACTGTCTT+AGG - Chr4:85024754-85024773 MsG0480023421.01.T01:intron 40.0%
GCGAAAATCACTGCTTGATT+AGG - Chr4:85024500-85024519 MsG0480023421.01.T01:intron 40.0%
GCGGTTAACAAAATCAATGG+GGG + Chr4:85023635-85023654 None:intergenic 40.0%
GTAACTAACTATTGTTCGGC+AGG - Chr4:85024709-85024728 MsG0480023421.01.T01:intron 40.0%
GTGTCTTCTTTAACCTGTTC+TGG + Chr4:85022111-85022130 None:intergenic 40.0%
GTTAACAAAATCAATGGGGG+TGG + Chr4:85023632-85023651 None:intergenic 40.0%
TAACTTAAGTGACCCCATAG+TGG + Chr4:85022796-85022815 None:intergenic 40.0%
TATTGCAGCTGAAGTAACTG+TGG - Chr4:85026128-85026147 MsG0480023421.01.T01:intron 40.0%
TATTTGGCGGAAATCAAGAG+AGG - Chr4:85023991-85024010 MsG0480023421.01.T01:intron 40.0%
TGGCATCTACTAAACATGAG+TGG + Chr4:85022896-85022915 None:intergenic 40.0%
TTCAACTTACGCGCACAATT+CGG + Chr4:85023016-85023035 None:intergenic 40.0%
TTCGATTCTCCGTGTCAATT+TGG + Chr4:85022597-85022616 None:intergenic 40.0%
TTCTCCGTGTCAATTTGGAT+GGG + Chr4:85022592-85022611 None:intergenic 40.0%
! ATGAGTTAGCTTGATCGTGT+TGG + Chr4:85022659-85022678 None:intergenic 40.0%
! GATATGGGTTATTGTCCTCT+AGG + Chr4:85024919-85024938 None:intergenic 40.0%
! GCTTTGTTACCACTGTTTGT+AGG + Chr4:85023434-85023453 None:intergenic 40.0%
! TATGGGTTATTGTCCTCTAG+GGG + Chr4:85024917-85024936 None:intergenic 40.0%
! TGAACTTAGCTCAGTTGGTA+GGG + Chr4:85024597-85024616 None:intergenic 40.0%
! TGATTTGGAGAGATAGTGAG+AGG - Chr4:85024333-85024352 MsG0480023421.01.T01:intron 40.0%
! TTCACAACTGTTTCTTCAGC+TGG + Chr4:85026093-85026112 None:intergenic 40.0%
!! AAACAAAGGTGCAACCCTTT+TGG - Chr4:85023585-85023604 MsG0480023421.01.T01:intron 40.0%
!! TCGAACATGAGATTTTGAGG+AGG - Chr4:85022612-85022631 MsG0480023421.01.T01:CDS 40.0%
!! TCTTTAACCTGTTCTGGTTC+AGG + Chr4:85022105-85022124 None:intergenic 40.0%
!! TGAGTTTGAGTTGACTGTGA+TGG - Chr4:85024157-85024176 MsG0480023421.01.T01:intron 40.0%
!! TTGTTTTTCTGCCTCCACTT+TGG + Chr4:85022142-85022161 None:intergenic 40.0%
AACAAATAGGGGCCTCCAAA+AGG + Chr4:85023603-85023622 None:intergenic 45.0%
AACATGAGTGGTCCCATATC+GGG + Chr4:85022884-85022903 None:intergenic 45.0%
AATGTCAATTCTTGGCTGCG+AGG - Chr4:85022824-85022843 MsG0480023421.01.T01:intron 45.0%
ACAAATAGGGGCCTCCAAAA+GGG + Chr4:85023602-85023621 None:intergenic 45.0%
ACCAAAGGTTACGAAGGATG+GGG - Chr4:85022050-85022069 MsG0480023421.01.T01:CDS 45.0%
ACTTCAATCACTTTCTCCGC+AGG + Chr4:85026285-85026304 None:intergenic 45.0%
AGAAGGTGAGAAAGCTTCAG+AGG - Chr4:85026173-85026192 MsG0480023421.01.T01:intron 45.0%
AGTGATGAGTGGTAGGTAGT+GGG - Chr4:85024216-85024235 MsG0480023421.01.T01:intron 45.0%
ATGCCAATGCTTAGGTGTGA+GGG - Chr4:85022910-85022929 MsG0480023421.01.T01:intron 45.0%
ATGTCAATTCTTGGCTGCGA+GGG - Chr4:85022825-85022844 MsG0480023421.01.T01:intron 45.0%
CAAGAGCAATTGTTGCAGAG+TGG - Chr4:85022159-85022178 MsG0480023421.01.T01:CDS 45.0%
CACTGTTGAAACCAAAGTGG+AGG - Chr4:85022128-85022147 MsG0480023421.01.T01:CDS 45.0%
GAGAGGAAACCCATTAAAGG+TGG + Chr4:85025524-85025543 None:intergenic 45.0%
GCGGAAATCAAGAGAGGTAA+TGG - Chr4:85023997-85024016 MsG0480023421.01.T01:intron 45.0%
GGGTGGGATCTGAACAAATA+GGG + Chr4:85023615-85023634 None:intergenic 45.0%
GGGTTGTGCAACTAAACCAA+AGG - Chr4:85022035-85022054 MsG0480023421.01.T01:CDS 45.0%
GGTAGTAAGGAATATGGGCT+GGG - Chr4:85024808-85024827 MsG0480023421.01.T01:intron 45.0%
GGTGGGATCTGAACAAATAG+GGG + Chr4:85023614-85023633 None:intergenic 45.0%
GTGAACTTAGCTCAGTTGGT+AGG + Chr4:85024598-85024617 None:intergenic 45.0%
TGCGAGAGGAAACCCATTAA+AGG + Chr4:85025527-85025546 None:intergenic 45.0%
TGCGGAGAAAGTGATTGAAG+TGG - Chr4:85026284-85026303 MsG0480023421.01.T01:CDS 45.0%
TGGTAGTAAGGAATATGGGC+TGG - Chr4:85024807-85024826 MsG0480023421.01.T01:intron 45.0%
!! ATCGTGTTGGCTTAGGACAT+AGG + Chr4:85022646-85022665 None:intergenic 45.0%
!! TAGCTTGATCGTGTTGGCTT+AGG + Chr4:85022653-85022672 None:intergenic 45.0%
!!! CTCTTTTTTTTGTGGTGGCC+GGG - Chr4:85024535-85024554 MsG0480023421.01.T01:intron 45.0%
!!! GCTCTTTTTTTTGTGGTGGC+CGG - Chr4:85024534-85024553 MsG0480023421.01.T01:intron 45.0%
!!! TCTTTTTTTTGTGGTGGCCG+GGG - Chr4:85024536-85024555 MsG0480023421.01.T01:intron 45.0%
AAGGTACGAGGTTCAAACCC+CGG + Chr4:85024556-85024575 None:intergenic 50.0%
ACCTGAACCTGAACCAGAAC+AGG - Chr4:85022095-85022114 MsG0480023421.01.T01:CDS 50.0%
CCAAAGGTTACGAAGGATGG+GGG - Chr4:85022051-85022070 MsG0480023421.01.T01:CDS 50.0%
CCAACTGAGCTAAGTTCACG+AGG - Chr4:85024599-85024618 MsG0480023421.01.T01:intron 50.0%
CCTCGTGAACTTAGCTCAGT+TGG + Chr4:85024602-85024621 None:intergenic 50.0%
GAGTGATGAGTGGTAGGTAG+TGG - Chr4:85024215-85024234 MsG0480023421.01.T01:intron 50.0%
GATGCCAATGCTTAGGTGTG+AGG - Chr4:85022909-85022928 MsG0480023421.01.T01:intron 50.0%
GGGGTGGGATCTGAACAAAT+AGG + Chr4:85023616-85023635 None:intergenic 50.0%
GGTGGGTGGAGATAGTAGAT+TGG + Chr4:85024896-85024915 None:intergenic 50.0%
TAACTAGTGTGCGTGTCCCA+CGG - Chr4:85023684-85023703 MsG0480023421.01.T01:intron 50.0%
TCAATCACTTTCTCCGCAGG+TGG + Chr4:85026282-85026301 None:intergenic 50.0%
TGAGCTAAGTTCACGAGGAC+AGG - Chr4:85024604-85024623 MsG0480023421.01.T01:intron 50.0%
TTCTGACATCAAGGCCCAGA+TGG + Chr4:85024851-85024870 None:intergenic 50.0%
! GGTTATTGTCCTCTAGGGGT+GGG + Chr4:85024913-85024932 None:intergenic 50.0%
! TCTGGTTCAGGTTCAGGTTC+AGG + Chr4:85022093-85022112 None:intergenic 50.0%
!! ACCTGTTCTGGTTCAGGTTC+AGG + Chr4:85022099-85022118 None:intergenic 50.0%
!! CAAAGGTGCAACCCTTTTGG+AGG - Chr4:85023588-85023607 MsG0480023421.01.T01:intron 50.0%
ATCACTTTCTCCGCAGGTGG+AGG + Chr4:85026279-85026298 None:intergenic 55.0%
CCCCCATCCTTCGTAACCTT+TGG + Chr4:85022054-85022073 None:intergenic 55.0%
GACATCAAGGCCCAGATGGT+AGG + Chr4:85024847-85024866 None:intergenic 55.0%
TCGCCCTCACACCTAAGCAT+TGG + Chr4:85022916-85022935 None:intergenic 55.0%
TGCATGGAGCTGCTCACTGA+TGG - Chr4:85024258-85024277 MsG0480023421.01.T01:intron 55.0%
! GGGTTATTGTCCTCTAGGGG+TGG + Chr4:85024914-85024933 None:intergenic 55.0%
! TATTGTCCTCTAGGGGTGGG+TGG + Chr4:85024910-85024929 None:intergenic 55.0%
!! GGATGGGGGTGTTGATGTGA+AGG - Chr4:85022065-85022084 MsG0480023421.01.T01:CDS 55.0%
CTATCTCCACCCACCCCTAG+AGG - Chr4:85024901-85024920 MsG0480023421.01.T01:intron 60.0%
TGTGGTGGTTCCTCCACCTG+CGG - Chr4:85026266-85026285 MsG0480023421.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 85022030 85026410 85022030 ID=MsG0480023421.01;Name=MsG0480023421.01
Chr4 mRNA 85022030 85026410 85022030 ID=MsG0480023421.01.T01;Parent=MsG0480023421.01;Name=MsG0480023421.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|2|0|298
Chr4 exon 85026177 85026410 85026177 ID=MsG0480023421.01.T01:exon:6255;Parent=MsG0480023421.01.T01
Chr4 exon 85022030 85022692 85022030 ID=MsG0480023421.01.T01:exon:6254;Parent=MsG0480023421.01.T01
Chr4 CDS 85026177 85026410 85026177 ID=MsG0480023421.01.T01:cds;Parent=MsG0480023421.01.T01
Chr4 CDS 85022030 85022692 85022030 ID=MsG0480023421.01.T01:cds;Parent=MsG0480023421.01.T01
Gene Sequence

>MsG0480023421.01.T01

ATGGGGGGTTGTGCAACTAAACCAAAGGTTACGAAGGATGGGGGTGTTGATGTGAAGGCACCTGAACCTGAACCTGAACCAGAACAGGTTAAAGAAGACACTGTTGAAACCAAAGTGGAGGCAGAAAAACAAGAGCAATTGTTGCAGAGTGGTCTCAATCTTGACGTTAACGAAATTGTTGATGATGATCAAGCAAATAAACGACGTTCTCTAAGCTTGTTGTTCAACAAAGAGAATGAAGATACAATTACAAAGGTTTCCACTCAAAATGAAAAAAACAAAGCTGAGGAAACTGTGAAAGAAGAAACATTAGAAACAGAGAAACCTTTGGAGGATGCTAAAAACATCGAGCCAACTTTGAAACATGAATCTCCAAAAACAGAGGAAAAACCAACTCAGGAAACTAAAAACAATGAACCATCTACAGAACAAGAATCTACAGTTATTAAGGTTGATGTTGAGGAAAAACCTTCATTGCAAAATCAAATCACTGATTCAGCTGCCGAAGAGATTGTGAAGACAGAAACACCAGAAGAAGCTAAGAAAACTTCACAAGAAACTAGTAAAATCAATGAACCAGCTGAAGAAACAGTTGTGAAACAAAACCAAAATGATATTGCAGCTGAAGTAACTGTGGTGAAGACAGATTCAGAAACACAAGAAGGTGAGAAAGCTTCAGAGGAAACAAAAAGCAATGAGTTGAATGAACCAATCAAACTAGAAAAATCATCTGAGACTATTCTCATTGAAAATGTGGTGGTTCCTCCACCTGCGGAGAAAGTGATTGAAGTGGTTTTAACAAATGCAGAATCTGTGGAGAACAAAATAGTGGAACCAACATCTAGCATAGAAGAGAAAAATCATGTAGAGCATATATCCAAGGCTTCTATCTCTTAA

Protein sequence

>MsG0480023421.01.T01

MGGCATKPKVTKDGGVDVKAPEPEPEPEQVKEDTVETKVEAEKQEQLLQSGLNLDVNEIVDDDQANKRRSLSLLFNKENEDTITKVSTQNEKNKAEETVKEETLETEKPLEDAKNIEPTLKHESPKTEEKPTQETKNNEPSTEQESTVIKVDVEEKPSLQNQITDSAAEEIVKTETPEEAKKTSQETSKINEPAEETVVKQNQNDIAAEVTVVKTDSETQEGEKASEETKSNELNEPIKLEKSSETILIENVVVPPPAEKVIEVVLTNAESVENKIVEPTSSIEEKNHVEHISKASIS*