AlfalfaGEDB | MsG0680033689.01

M. sativa cultivar ZhongmuNo.1 / MsG0680033689.01

KEGG: -
GO: GO:0005618 GO:0030599 GO:0042545
PFAM: PF01095

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680033689.01.T01	XP_039682885.1	92.378	328	25	0	1	328	2	329	0	640

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680033689.01.T01	Q3E9D3	52.041	294	129	3	35	317	26	318	3.41E-106	316

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680033689.01.T01	A0A396HD90	92.378	328	25	0	1	328	2	329	0.0	640

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0480021413.01	MsG0680033689.01	PPI
MsG0480021413.01	MsG0680033689.01	PPI
MsG0480021415.01	MsG0680033689.01	PPI
MsG0480021744.01	MsG0680033689.01	PPI
MsG0580026919.01	MsG0680033689.01	PPI
MsG0680033689.01	MsG0080048446.01	PPI
MsG0680033689.01	MsG0480021413.01	PPI
MsG0680033689.01	MsG0480021413.01	PPI
MsG0680033689.01	MsG0080048154.01	PPI
MsG0680033689.01	MsG0280009941.01	PPI

Showing 1 to 10 of 12 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680033689.01.T01	MTR_6g042690	86.607	336	34	2	1	328	1	333	0.0	603
MsG0680033689.01.T01	MTR_6g042660	71.341	328	92	1	1	328	1	326	2.98e-177	494
MsG0680033689.01.T01	MTR_1g033050	58.497	306	115	4	26	323	7	308	1.15e-119	347
MsG0680033689.01.T01	MTR_0408s0030	91.935	124	10	0	205	328	30	153	3.08e-84	251
MsG0680033689.01.T01	MTR_5g093970	43.974	307	154	6	30	327	36	333	1.29e-77	241
MsG0680033689.01.T01	MTR_8g102380	42.038	314	166	5	26	324	66	378	5.50e-74	233
MsG0680033689.01.T01	MTR_8g036225	40.122	329	174	6	9	327	11	326	5.76e-72	226
MsG0680033689.01.T01	MTR_6g088810	41.534	313	169	4	26	325	68	379	2.92e-71	226
MsG0680033689.01.T01	MTR_4g051810	42.568	296	154	7	38	327	36	321	9.88e-71	223
MsG0680033689.01.T01	MTR_5g088290	41.515	330	176	6	4	327	14	332	5.92e-70	221

Showing 1 to 10 of 105 entries

Previous1 2 3 4 5…11Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680033689.01.T01	AT5G18990	52.041	294	129	3	35	317	26	318	3.48e-107	316
MsG0680033689.01.T01	AT3G24130	52.414	290	127	2	39	317	34	323	1.48e-106	315
MsG0680033689.01.T01	AT2G47280	45.333	300	154	3	38	328	34	332	7.62e-86	262
MsG0680033689.01.T01	AT2G19150	42.953	298	161	2	38	327	40	336	9.80e-83	254
MsG0680033689.01.T01	AT5G26810	41.056	341	177	7	5	327	3	337	1.22e-76	238
MsG0680033689.01.T01	AT5G19730	41.479	311	168	4	26	323	72	381	2.45e-72	229
MsG0680033689.01.T01	AT2G21610	41.980	293	159	4	39	327	51	336	5.40e-72	227
MsG0680033689.01.T01	AT2G21610	41.980	293	159	4	39	327	56	341	5.66e-72	227
MsG0680033689.01.T01	AT3G17060	38.344	326	190	3	3	317	6	331	5.71e-71	224
MsG0680033689.01.T01	AT2G19150	44.309	246	129	1	38	275	40	285	2.21e-70	221

Showing 1 to 10 of 77 entries

Previous1 2 3 4 5…8Next

Find 74 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTACAGCACCTTGTA+TGG	0.476421	6:+71221859	None:intergenic
AAATCTTACATTATATTGAA+GGG	0.580252	6:-71223646	MsG0680033689.01.T01:CDS
AAATTGTAGAACCTAGTGGT+TGG	0.570289	6:-71220968	MsG0680033689.01.T01:CDS
AACCTAGTGGTTGGGATTCA+TGG	0.316953	6:-71220959	MsG0680033689.01.T01:CDS
AACTTTCGATTCCCATTTAT+AGG	0.258682	6:+71221998	None:intergenic
AAGCCAATGCTCAATATTAC+CGG	0.410729	6:-71224084	MsG0680033689.01.T01:CDS
AAGTCCAACCTTCTCAATAT+TGG	0.381258	6:-71223569	MsG0680033689.01.T01:CDS
AATTGTAGAACCTAGTGGTT+GGG	0.452789	6:-71220967	MsG0680033689.01.T01:CDS
ACAAATCCATTTGTATCGTT+TGG	0.256932	6:+71221089	None:intergenic
ACAATAGTAGTTGATCAATC+AGG	0.441767	6:-71224031	MsG0680033689.01.T01:CDS

Showing 1 to 10 of 74 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACTTTCGATTCCCATTTAT+AGG	+	Chr6:71222114-71222133	None:intergenic	30.0%
AATTAGCATACAGCTTTACT+AGG	-	Chr6:71223293-71223312	MsG0680033689.01.T01:intron	30.0%
ACAAATCCATTTGTATCGTT+TGG	+	Chr6:71223023-71223042	None:intergenic	30.0%
ACAATAGTAGTTGATCAATC+AGG	-	Chr6:71220078-71220097	MsG0680033689.01.T01:CDS	30.0%
ACCCAATTCCTATTGTAAAA+TGG	+	Chr6:71220147-71220166	None:intergenic	30.0%
AGATGTTCCATATCAGTTAT+TGG	-	Chr6:71222963-71222982	MsG0680033689.01.T01:intron	30.0%
ATAAGCATAACTCGGTATAT+AGG	-	Chr6:71221328-71221347	MsG0680033689.01.T01:intron	30.0%
ATGCATGTCTTGAATTGAAT+TGG	-	Chr6:71222475-71222494	MsG0680033689.01.T01:intron	30.0%
ATGTTCCATATCAGTTATTG+GGG	-	Chr6:71222965-71222984	MsG0680033689.01.T01:intron	30.0%
ATTAGCATACAGCTTTACTA+GGG	-	Chr6:71223294-71223313	MsG0680033689.01.T01:intron	30.0%

Showing 1 to 10 of 227 entries

Previous1 2 3 4 5…23Next

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	71219967	71224164	71219967	ID=MsG0680033689.01;Name=MsG0680033689.01
Chr6	mRNA	71219967	71224164	71219967	ID=MsG0680033689.01.T01;Parent=MsG0680033689.01;Name=MsG0680033689.01.T01;_AED=0.12;_eAED=0.12;_QI=0\|0\|0\|1\|1\|1\|5\|0\|328
Chr6	exon	71223935	71224164	71223935	ID=MsG0680033689.01.T01:exon:39378;Parent=MsG0680033689.01.T01
Chr6	exon	71223534	71223693	71223534	ID=MsG0680033689.01.T01:exon:39377;Parent=MsG0680033689.01.T01
Chr6	exon	71221829	71222035	71221829	ID=MsG0680033689.01.T01:exon:39376;Parent=MsG0680033689.01.T01
Chr6	exon	71220942	71221168	71220942	ID=MsG0680033689.01.T01:exon:39375;Parent=MsG0680033689.01.T01
Chr6	exon	71219967	71220129	71219967	ID=MsG0680033689.01.T01:exon:39374;Parent=MsG0680033689.01.T01
Chr6	CDS	71223935	71224164	71223935	ID=MsG0680033689.01.T01:cds;Parent=MsG0680033689.01.T01
Chr6	CDS	71223534	71223693	71223534	ID=MsG0680033689.01.T01:cds;Parent=MsG0680033689.01.T01
Chr6	CDS	71221829	71222035	71221829	ID=MsG0680033689.01.T01:cds;Parent=MsG0680033689.01.T01
Chr6	CDS	71220942	71221168	71220942	ID=MsG0680033689.01.T01:cds;Parent=MsG0680033689.01.T01
Chr6	CDS	71219967	71220129	71219967	ID=MsG0680033689.01.T01:cds;Parent=MsG0680033689.01.T01

Gene Sequence

>MsG0680033689.01.T01

ATGTTTCGTTTGTGTTTGGTTCCATTTATCTTTCTCTTGGTTGGGTTAGGAGTAGAAGAAGCCAATGCTCAATATTACCGGAAAGTTGGAAATAAAATATTTCCATTCTCCACAATAGTAGTTGATCAATCAGGAAATGGACACTTTACTTCCATTCAATCTGCTATTGATTCAATCCCATTTTACAATAGGAATTGGGTTTCCATTAGGGTTAAGGCTGGTATCTATAGAGAAAAAGTTGTCATCCCACAGAACAAATCTTACATTATATTGAAGGGAGCTGGAAAAAAACGAACTATTGTTGAATGGTATGATCCAAATGGACCTGAAAAAAGTCCAACCTTCTCAATATTGGCAGACAACATTCATGTCAGATGTATGAGTTTTCGGAACTCATACAACAATCCTATAAATGGGAATCGAAAGTTACGTGCTGTGGCTGCAGCTGTTAGTGGTGACAAGGTCCATTTTTTCAGAGTTGCTTTTTATGGCTATCAAGACACATTGTATGATGCCAATGGAAGACACTACTACAAACTTTGTACCATACAAGGTGCTGTAGATTTTATCTTTGGTGCAGGCCAATCTTTGTTTGAGAGATGTTCCATATCAGTTATTGGGGGTGGTTTCATAACAGCACAAGGTAGAATGAGCCCAAACGATACAAATGGATTTGTATTTAAAGATTGTCATATCTTTGGAAATGCAAATACTTACTTAGGGAGGCCATGGAGACCTTATGCAAGAGTGCTTTTTTACAAGACCAACATGTCCAAAATTGTAGAACCTAGTGGTTGGGATTCATGGAGTCCTGATAGTCGTGAGGATCTAACTACATATGCTGAGTATGGAAATTTTGGACCTGGTGCTGATACATCCAAGAGAGTAAGTTGGGCTAAAAAATTGGATTTACAAACTATTGAAAATATGGCAAGTATGAACTTTATCAACACACCAGAAGAATGGATCAATTATCAACCGTTTTAA

Protein sequence

>MsG0680033689.01.T01

MFRLCLVPFIFLLVGLGVEEANAQYYRKVGNKIFPFSTIVVDQSGNGHFTSIQSAIDSIPFYNRNWVSIRVKAGIYREKVVIPQNKSYIILKGAGKKRTIVEWYDPNGPEKSPTFSILADNIHVRCMSFRNSYNNPINGNRKLRAVAAAVSGDKVHFFRVAFYGYQDTLYDANGRHYYKLCTIQGAVDFIFGAGQSLFERCSISVIGGGFITAQGRMSPNDTNGFVFKDCHIFGNANTYLGRPWRPYARVLFYKTNMSKIVEPSGWDSWSPDSREDLTTYAEYGNFGPGADTSKRVSWAKKLDLQTIENMASMNFINTPEEWINYQPF*