AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680033689.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033689.01.T01 MTR_6g042690 86.607 336 34 2 1 328 1 333 0.0 603
MsG0680033689.01.T01 MTR_6g042660 71.341 328 92 1 1 328 1 326 2.98e-177 494
MsG0680033689.01.T01 MTR_1g033050 58.497 306 115 4 26 323 7 308 1.15e-119 347
MsG0680033689.01.T01 MTR_0408s0030 91.935 124 10 0 205 328 30 153 3.08e-84 251
MsG0680033689.01.T01 MTR_5g093970 43.974 307 154 6 30 327 36 333 1.29e-77 241
MsG0680033689.01.T01 MTR_8g102380 42.038 314 166 5 26 324 66 378 5.50e-74 233
MsG0680033689.01.T01 MTR_8g036225 40.122 329 174 6 9 327 11 326 5.76e-72 226
MsG0680033689.01.T01 MTR_6g088810 41.534 313 169 4 26 325 68 379 2.92e-71 226
MsG0680033689.01.T01 MTR_4g051810 42.568 296 154 7 38 327 36 321 9.88e-71 223
MsG0680033689.01.T01 MTR_5g088290 41.515 330 176 6 4 327 14 332 5.92e-70 221
MsG0680033689.01.T01 MTR_7g102600 39.799 299 169 2 38 325 98 396 1.01e-68 220
MsG0680033689.01.T01 MTR_5g088300 42.857 294 153 4 39 327 37 320 4.52e-68 216
MsG0680033689.01.T01 MTR_2g033970 37.963 324 190 3 1 317 22 341 1.65e-67 215
MsG0680033689.01.T01 MTR_5g012600 37.013 308 175 6 29 323 58 359 1.65e-66 213
MsG0680033689.01.T01 MTR_5g088280 41.216 296 159 4 37 327 37 322 2.20e-66 212
MsG0680033689.01.T01 MTR_8g102380 43.774 265 134 4 26 275 66 330 4.16e-63 203
MsG0680033689.01.T01 MTR_7g092780 35.548 301 179 3 37 323 88 387 3.71e-60 197
MsG0680033689.01.T01 MTR_2g436600 36.308 325 185 6 1 317 21 331 8.16e-60 195
MsG0680033689.01.T01 MTR_6g012800 36.577 298 175 4 35 320 3 298 5.78e-59 192
MsG0680033689.01.T01 MTR_7g011530 36.577 298 166 6 40 320 7 298 5.75e-58 189
MsG0680033689.01.T01 MTR_1g086540 36.426 291 172 4 39 317 50 339 8.38e-54 180
MsG0680033689.01.T01 MTR_7g108900 37.589 282 149 6 39 298 247 523 3.06e-53 184
MsG0680033689.01.T01 MTR_5g095490 35.374 294 172 7 45 323 67 357 4.33e-52 176
MsG0680033689.01.T01 MTR_8g023310 35.612 278 156 4 39 298 279 551 7.89e-52 180
MsG0680033689.01.T01 MTR_6g024165 35.906 298 174 7 39 323 41 334 3.40e-51 173
MsG0680033689.01.T01 MTR_7g108890 37.722 281 149 6 39 298 250 525 5.13e-50 175
MsG0680033689.01.T01 MTR_2g044880 35.971 278 155 4 39 298 215 487 7.26e-50 174
MsG0680033689.01.T01 MTR_4g124520 34.295 312 177 8 39 328 210 515 6.18e-49 171
MsG0680033689.01.T01 MTR_2g436040 32.759 290 173 4 39 311 232 516 9.01e-49 172
MsG0680033689.01.T01 MTR_1g083520 36.749 283 151 7 39 298 214 491 1.16e-48 171
MsG0680033689.01.T01 MTR_7g112580 34.701 268 161 4 40 298 242 504 4.31e-48 169
MsG0680033689.01.T01 MTR_4g087980 35.252 278 157 4 40 299 207 479 5.24e-48 169
MsG0680033689.01.T01 MTR_1g083510 33.000 300 173 7 37 316 270 561 1.38e-47 169
MsG0680033689.01.T01 MTR_1g054880 33.754 317 179 9 31 323 238 547 1.71e-47 168
MsG0680033689.01.T01 MTR_4g025690 34.602 289 165 5 27 298 194 475 3.38e-47 166
MsG0680033689.01.T01 MTR_8g104645 33.333 288 168 5 30 298 52 334 2.44e-46 161
MsG0680033689.01.T01 MTR_7g108875 34.247 292 166 6 28 298 241 527 3.20e-46 165
MsG0680033689.01.T01 MTR_4g087970 35.252 278 157 4 40 299 208 480 3.33e-46 164
MsG0680033689.01.T01 MTR_1g088020 35.252 278 152 7 43 298 247 518 9.74e-46 163
MsG0680033689.01.T01 MTR_8g088610 33.688 282 161 6 40 300 66 342 1.54e-45 159
MsG0680033689.01.T01 MTR_8g042900 35.036 274 159 6 39 298 276 544 1.55e-45 163
MsG0680033689.01.T01 MTR_8g104655 34.028 288 166 5 30 298 221 503 1.75e-45 162
MsG0680033689.01.T01 MTR_4g074290 31.757 296 194 4 39 327 71 365 1.01e-44 157
MsG0680033689.01.T01 MTR_2g044810 33.216 283 166 5 35 299 221 498 2.08e-44 159
MsG0680033689.01.T01 MTR_1g086210 32.979 282 166 4 35 298 249 525 2.48e-44 160
MsG0680033689.01.T01 MTR_3g010780 34.909 275 158 6 39 298 269 537 3.89e-44 159
MsG0680033689.01.T01 MTR_4g025670 33.571 280 160 5 40 298 177 451 5.12e-44 157
MsG0680033689.01.T01 MTR_1g088225 33.443 305 170 10 43 323 247 542 6.89e-44 158
MsG0680033689.01.T01 MTR_4g120290 32.852 277 164 4 39 298 258 529 1.32e-43 158
MsG0680033689.01.T01 MTR_7g108905 33.094 278 163 4 39 298 246 518 2.18e-43 157
MsG0680033689.01.T01 MTR_8g042910 33.684 285 155 6 39 298 300 575 2.55e-43 157
MsG0680033689.01.T01 MTR_1g086190 33.333 279 163 4 40 300 256 529 2.59e-43 157
MsG0680033689.01.T01 MTR_4g124740 35.117 299 175 9 39 327 54 343 2.85e-43 152
MsG0680033689.01.T01 MTR_2g044660 31.271 291 180 4 35 310 323 608 4.64e-43 157
MsG0680033689.01.T01 MTR_7g050950 32.270 282 166 5 37 298 240 516 9.63e-43 155
MsG0680033689.01.T01 MTR_2g073390 31.081 296 196 4 39 327 71 365 1.20e-42 151
MsG0680033689.01.T01 MTR_4g005170 33.333 291 167 6 31 299 254 539 1.41e-42 155
MsG0680033689.01.T01 MTR_0009s0350 31.757 296 194 4 39 327 71 365 1.45e-42 151
MsG0680033689.01.T01 MTR_0009s0340 31.757 296 194 4 39 327 71 365 1.45e-42 151
MsG0680033689.01.T01 MTR_1g083490 33.333 291 167 6 31 299 254 539 2.99e-42 154
MsG0680033689.01.T01 MTR_7g053360 34.520 281 157 8 39 298 215 489 3.06e-42 153
MsG0680033689.01.T01 MTR_4g035980 36.749 283 148 10 39 298 227 501 3.15e-42 154
MsG0680033689.01.T01 MTR_1g083470 33.449 287 162 7 35 299 255 534 4.15e-42 154
MsG0680033689.01.T01 MTR_1g083500 33.449 287 162 7 35 299 255 534 4.15e-42 154
MsG0680033689.01.T01 MTR_4g025730 33.818 275 159 6 39 298 205 471 4.82e-42 152
MsG0680033689.01.T01 MTR_3g008720 34.520 281 157 8 39 298 215 489 7.60e-42 152
MsG0680033689.01.T01 MTR_3g008640 34.520 281 157 8 39 298 215 489 8.59e-42 152
MsG0680033689.01.T01 MTR_7g110440 33.574 277 161 4 40 298 260 531 1.09e-41 152
MsG0680033689.01.T01 MTR_4g120280 32.246 276 165 4 40 298 259 529 1.72e-41 152
MsG0680033689.01.T01 MTR_5g083620 34.276 283 161 7 40 302 47 324 1.96e-41 148
MsG0680033689.01.T01 MTR_3g010770 32.566 304 169 7 39 315 263 557 2.02e-41 152
MsG0680033689.01.T01 MTR_3g008700 34.164 281 158 8 39 298 215 489 2.53e-41 151
MsG0680033689.01.T01 MTR_4g005180 32.646 291 169 6 31 299 236 521 3.75e-41 151
MsG0680033689.01.T01 MTR_4g124550 31.690 284 171 4 33 298 279 557 3.95e-41 151
MsG0680033689.01.T01 MTR_3g033690 34.164 281 158 9 39 298 214 488 4.38e-41 150
MsG0680033689.01.T01 MTR_7g050980 32.270 282 166 5 37 298 241 517 5.03e-41 150
MsG0680033689.01.T01 MTR_8g093460 31.373 306 175 6 47 323 241 540 7.37e-41 150
MsG0680033689.01.T01 MTR_7g050870 31.915 282 167 5 37 298 240 516 2.53e-40 149
MsG0680033689.01.T01 MTR_3g095920 29.712 313 180 7 44 324 250 554 6.49e-40 147
MsG0680033689.01.T01 MTR_7g107180 33.577 274 161 7 37 298 5 269 1.51e-39 141
MsG0680033689.01.T01 MTR_2g436050 31.884 276 166 5 40 298 251 521 2.38e-39 146
MsG0680033689.01.T01 MTR_7g110490 33.453 278 160 5 40 298 260 531 2.53e-39 146
MsG0680033689.01.T01 MTR_7g110510 33.453 278 160 5 40 298 260 531 2.53e-39 146
MsG0680033689.01.T01 MTR_3g091380 33.218 289 163 8 34 298 277 559 8.11e-39 145
MsG0680033689.01.T01 MTR_7g110420 32.281 285 162 6 40 298 260 539 9.25e-39 144
MsG0680033689.01.T01 MTR_7g110560 31.449 283 170 5 39 302 240 517 9.58e-39 144
MsG0680033689.01.T01 MTR_1g008140 33.333 279 162 6 39 298 296 569 1.06e-38 145
MsG0680033689.01.T01 MTR_0458s0030 33.846 260 144 8 85 323 51 303 1.32e-38 139
MsG0680033689.01.T01 MTR_1g088040 33.846 260 144 8 85 323 51 303 1.32e-38 139
MsG0680033689.01.T01 MTR_7g112590 29.097 299 183 6 39 316 271 561 4.82e-38 142
MsG0680033689.01.T01 MTR_2g105560 32.472 271 161 5 39 298 42 301 5.01e-38 138
MsG0680033689.01.T01 MTR_8g104580 30.496 282 151 5 30 298 213 462 2.89e-35 134
MsG0680033689.01.T01 MTR_8g023150 31.525 295 179 8 21 299 258 545 8.97e-35 133
MsG0680033689.01.T01 MTR_0618s0020 35.385 195 107 3 118 298 1 190 1.15e-33 124
MsG0680033689.01.T01 MTR_2g044810 33.990 203 115 4 111 299 232 429 1.16e-33 129
MsG0680033689.01.T01 MTR_4g130790 42.857 168 88 3 63 222 49 216 2.36e-33 124
MsG0680033689.01.T01 MTR_7g111560 28.521 284 172 5 39 298 240 516 1.13e-29 119
MsG0680033689.01.T01 MTR_7g110430 29.044 272 146 4 40 298 260 497 1.50e-29 118
MsG0680033689.01.T01 MTR_6g025590 37.870 169 92 2 41 199 51 216 9.13e-29 111
MsG0680033689.01.T01 MTR_5g083590 24.104 307 155 8 36 323 4 251 3.06e-18 83.6
MsG0680033689.01.T01 MTR_0458s0010 26.370 292 173 10 43 323 247 507 2.03e-17 83.2
MsG0680033689.01.T01 MTR_6g024200 35.915 142 80 6 190 324 140 277 2.59e-17 80.9
MsG0680033689.01.T01 MTR_7g102570 38.614 101 54 2 197 290 1 100 7.44e-15 70.5
MsG0680033689.01.T01 MTR_2g039530 26.277 274 175 9 40 298 53 314 1.80e-11 64.7
MsG0680033689.01.T01 MTR_6g006340 50.000 54 27 0 146 199 49 102 6.00e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033689.01.T01 AT5G18990 52.041 294 129 3 35 317 26 318 3.48e-107 316
MsG0680033689.01.T01 AT3G24130 52.414 290 127 2 39 317 34 323 1.48e-106 315
MsG0680033689.01.T01 AT2G47280 45.333 300 154 3 38 328 34 332 7.62e-86 262
MsG0680033689.01.T01 AT2G19150 42.953 298 161 2 38 327 40 336 9.80e-83 254
MsG0680033689.01.T01 AT5G26810 41.056 341 177 7 5 327 3 337 1.22e-76 238
MsG0680033689.01.T01 AT5G19730 41.479 311 168 4 26 323 72 381 2.45e-72 229
MsG0680033689.01.T01 AT2G21610 41.980 293 159 4 39 327 51 336 5.40e-72 227
MsG0680033689.01.T01 AT2G21610 41.980 293 159 4 39 327 56 341 5.66e-72 227
MsG0680033689.01.T01 AT3G17060 38.344 326 190 3 3 317 6 331 5.71e-71 224
MsG0680033689.01.T01 AT2G19150 44.309 246 129 1 38 275 40 285 2.21e-70 221
MsG0680033689.01.T01 AT2G36710 38.591 298 171 3 39 325 91 387 1.14e-69 223
MsG0680033689.01.T01 AT5G47500 37.919 298 171 5 39 323 61 357 6.85e-67 214
MsG0680033689.01.T01 AT2G36700 39.175 291 168 3 41 323 44 333 8.62e-66 210
MsG0680033689.01.T01 AT1G05310 36.634 303 177 3 37 325 89 390 2.72e-65 211
MsG0680033689.01.T01 AT3G29090 34.915 295 179 3 39 321 7 300 1.02e-54 181
MsG0680033689.01.T01 AT5G07430 33.803 284 181 4 39 316 67 349 3.97e-52 176
MsG0680033689.01.T01 AT5G07420 34.507 284 179 4 39 316 67 349 3.36e-51 173
MsG0680033689.01.T01 AT1G23200 36.735 294 165 7 39 317 251 538 4.69e-50 175
MsG0680033689.01.T01 AT5G55590 35.762 302 174 7 38 323 81 378 8.60e-50 170
MsG0680033689.01.T01 AT4G33220 37.410 278 151 4 39 298 92 364 1.03e-49 171
MsG0680033689.01.T01 AT5G61680 33.684 285 183 3 39 317 69 353 2.83e-49 169
MsG0680033689.01.T01 AT4G33220 37.410 278 151 4 39 298 213 485 4.34e-49 172
MsG0680033689.01.T01 AT4G02330 36.271 295 150 9 31 298 251 534 7.51e-49 172
MsG0680033689.01.T01 AT3G05620 34.783 276 162 5 33 298 237 504 1.60e-48 171
MsG0680033689.01.T01 AT5G04970 34.202 307 173 6 30 315 299 597 2.70e-48 171
MsG0680033689.01.T01 AT2G47030 34.043 282 160 5 40 300 278 554 3.63e-47 167
MsG0680033689.01.T01 AT3G10720 33.546 313 172 7 30 315 294 597 4.77e-47 168
MsG0680033689.01.T01 AT4G33230 33.013 312 177 8 35 324 295 596 5.69e-47 167
MsG0680033689.01.T01 AT5G55590 37.402 254 140 6 38 275 81 331 7.91e-47 161
MsG0680033689.01.T01 AT5G27870 32.459 305 180 6 39 323 253 551 1.96e-46 167
MsG0680033689.01.T01 AT5G04960 34.783 276 161 5 37 298 256 526 3.69e-46 164
MsG0680033689.01.T01 AT3G43270 36.462 277 153 5 40 298 216 487 4.21e-46 164
MsG0680033689.01.T01 AT3G05610 32.131 305 181 6 39 323 256 554 1.16e-45 165
MsG0680033689.01.T01 AT3G06830 33.688 282 171 3 40 305 259 540 1.25e-45 163
MsG0680033689.01.T01 AT1G53830 33.218 289 166 5 32 298 266 549 4.51e-45 162
MsG0680033689.01.T01 AT3G59010 32.414 290 180 5 18 299 210 491 4.63e-45 161
MsG0680033689.01.T01 AT5G49180 31.673 281 168 4 37 298 258 533 5.33e-45 161
MsG0680033689.01.T01 AT2G26450 34.276 283 160 6 35 298 300 575 6.30e-45 162
MsG0680033689.01.T01 AT3G60730 35.714 280 154 6 40 298 207 481 1.08e-44 160
MsG0680033689.01.T01 AT2G45220 34.256 289 164 6 27 298 195 474 2.20e-44 159
MsG0680033689.01.T01 AT1G02810 35.088 285 151 7 39 298 265 540 2.22e-44 160
MsG0680033689.01.T01 AT5G07410 30.903 288 190 5 47 327 74 359 3.28e-44 155
MsG0680033689.01.T01 AT1G69940 30.556 288 191 5 47 327 74 359 5.10e-44 155
MsG0680033689.01.T01 AT2G47550 33.974 312 169 9 39 323 246 547 3.98e-43 156
MsG0680033689.01.T01 AT2G47040 32.281 285 167 6 37 300 282 561 6.50e-43 156
MsG0680033689.01.T01 AT2G43050 32.131 305 185 7 40 327 215 514 9.76e-43 154
MsG0680033689.01.T01 AT5G09760 30.990 313 180 7 39 322 241 546 1.06e-42 155
MsG0680033689.01.T01 AT3G10710 34.672 274 160 5 39 298 256 524 1.08e-42 155
MsG0680033689.01.T01 AT4G00190 34.982 283 152 6 39 299 165 437 1.28e-42 153
MsG0680033689.01.T01 AT5G09760 30.990 313 180 7 39 322 267 572 1.35e-42 155
MsG0680033689.01.T01 AT2G26440 32.979 282 166 5 35 298 234 510 4.81e-42 153
MsG0680033689.01.T01 AT4G03930 33.559 295 166 7 22 299 206 487 8.13e-42 152
MsG0680033689.01.T01 AT5G64640 30.892 314 182 7 38 322 290 597 2.35e-41 152
MsG0680033689.01.T01 AT3G14310 31.707 287 171 5 30 298 275 554 4.26e-41 151
MsG0680033689.01.T01 AT3G27980 33.808 281 163 6 36 299 186 460 8.20e-41 149
MsG0680033689.01.T01 AT1G11580 32.857 280 165 4 37 298 245 519 1.56e-40 149
MsG0680033689.01.T01 AT1G11590 33.220 295 167 7 22 299 206 487 1.71e-40 149
MsG0680033689.01.T01 AT1G53840 32.616 279 161 7 39 299 281 550 1.83e-40 149
MsG0680033689.01.T01 AT1G11580 32.857 280 165 4 37 298 266 540 1.92e-40 149
MsG0680033689.01.T01 AT3G62170 31.803 305 188 7 37 323 275 577 5.42e-40 148
MsG0680033689.01.T01 AT3G14300 33.688 282 165 7 33 299 657 931 7.06e-40 149
MsG0680033689.01.T01 AT3G10720 34.959 246 135 5 90 315 1 241 7.12e-40 141
MsG0680033689.01.T01 AT4G02320 31.270 307 184 7 39 324 208 508 1.77e-39 145
MsG0680033689.01.T01 AT5G20860 32.384 281 160 8 39 298 230 501 1.64e-38 143
MsG0680033689.01.T01 AT3G47400 35.211 284 152 8 39 298 281 556 5.79e-38 142
MsG0680033689.01.T01 AT5G53370 32.975 279 163 6 39 298 274 547 7.40e-37 139
MsG0680033689.01.T01 AT1G11370 31.579 247 144 5 39 266 46 286 7.70e-37 134
MsG0680033689.01.T01 AT4G02300 31.560 282 168 5 45 306 228 504 7.94e-37 139
MsG0680033689.01.T01 AT5G53370 32.975 279 163 6 39 298 310 583 9.01e-37 139
MsG0680033689.01.T01 AT5G51490 34.495 287 155 8 37 298 220 498 9.26e-37 139
MsG0680033689.01.T01 AT4G15980 27.820 266 168 4 37 283 400 660 4.02e-34 132
MsG0680033689.01.T01 AT4G15980 27.820 266 168 4 37 283 390 650 4.48e-34 132
MsG0680033689.01.T01 AT5G51500 34.146 287 156 8 37 298 224 502 5.05e-34 131
MsG0680033689.01.T01 AT3G49220 30.547 311 183 7 16 298 253 558 1.47e-33 130
MsG0680033689.01.T01 AT3G49220 30.547 311 183 7 16 298 298 603 1.54e-33 130
MsG0680033689.01.T01 AT5G20860 30.075 266 148 8 66 298 213 473 7.05e-31 122
MsG0680033689.01.T01 AT1G44980 28.814 177 117 3 36 208 75 246 2.46e-11 63.5

Find 74 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCACTAGGTTCTACAATTT+TGG 0.107474 6:+71220971 None:intergenic
TATGCTGAGTATGGAAATTT+TGG 0.164097 6:-71220094 MsG0680033689.01.T01:CDS
ACCCAATTCCTATTGTAAAA+TGG 0.168066 6:+71223965 None:intergenic
TCATACAACAATCCTATAAA+TGG 0.175522 6:-71222010 MsG0680033689.01.T01:CDS
TTTACAAACTATTGAAAATA+TGG 0.223076 6:-71220023 MsG0680033689.01.T01:CDS
TTTAAAGATTGTCATATCTT+TGG 0.228214 6:-71221065 MsG0680033689.01.T01:CDS
GATGTTCCATATCAGTTATT+GGG 0.256264 6:-71221145 MsG0680033689.01.T01:CDS
ACAAATCCATTTGTATCGTT+TGG 0.256932 6:+71221089 None:intergenic
AACTTTCGATTCCCATTTAT+AGG 0.258682 6:+71221998 None:intergenic
CCATTTATCTTTCTCTTGGT+TGG 0.308366 6:-71224121 MsG0680033689.01.T01:CDS
AGATGTTCCATATCAGTTAT+TGG 0.308913 6:-71221146 MsG0680033689.01.T01:CDS
CATTTATCTTTCTCTTGGTT+GGG 0.313560 6:-71224120 MsG0680033689.01.T01:CDS
AACCTAGTGGTTGGGATTCA+TGG 0.316953 6:-71220959 MsG0680033689.01.T01:CDS
GGAAATGCAAATACTTACTT+AGG 0.320412 6:-71221044 MsG0680033689.01.T01:CDS
ATAGGAATTGGGTTTCCATT+AGG 0.320665 6:-71223955 MsG0680033689.01.T01:CDS
CCCAATTCCTATTGTAAAAT+GGG 0.321372 6:+71223966 None:intergenic
CAAATCCATTTGTATCGTTT+GGG 0.327633 6:+71221090 None:intergenic
CTAACTACATATGCTGAGTA+TGG 0.328068 6:-71220103 MsG0680033689.01.T01:CDS
CATCATGTTTCGTTTGTGTT+TGG 0.335167 6:-71224146 None:intergenic
CCAACCAAGAGAAAGATAAA+TGG 0.338496 6:+71224121 None:intergenic
TAGGAATTGGGTTTCCATTA+GGG 0.340458 6:-71223954 MsG0680033689.01.T01:CDS
TGATAATTGATCCATTCTTC+TGG 0.342722 6:+71219977 None:intergenic
GGTTCCATTTATCTTTCTCT+TGG 0.358900 6:-71224125 MsG0680033689.01.T01:CDS
TATTTACCTCAAACAAAGAT+TGG 0.374711 6:+71221822 None:intergenic
ATAACTTACTCACGACTATC+AGG 0.377234 6:+71220933 None:intergenic
AAGTCCAACCTTCTCAATAT+TGG 0.381258 6:-71223569 MsG0680033689.01.T01:CDS
TTGGGTTTCCATTAGGGTTA+AGG 0.385119 6:-71223948 MsG0680033689.01.T01:CDS
ATCTTTCTCTTGGTTGGGTT+AGG 0.385768 6:-71224115 MsG0680033689.01.T01:CDS
TTTAGCCCAACTTACTCTCT+TGG 0.395436 6:+71220054 None:intergenic
GATACCAGCCTTAACCCTAA+TGG 0.405443 6:+71223940 None:intergenic
AAGCCAATGCTCAATATTAC+CGG 0.410729 6:-71224084 MsG0680033689.01.T01:CDS
GCTGTGGCTGCAGCTGTTAG+TGG 0.430748 6:-71221971 MsG0680033689.01.T01:CDS
GTAGTTGATCAATCAGGAAA+TGG 0.433116 6:-71224025 MsG0680033689.01.T01:CDS
ACAATAGTAGTTGATCAATC+AGG 0.441767 6:-71224031 MsG0680033689.01.T01:CDS
AATTGTAGAACCTAGTGGTT+GGG 0.452789 6:-71220967 MsG0680033689.01.T01:CDS
TACATTATATTGAAGGGAGC+TGG 0.454514 6:-71223640 MsG0680033689.01.T01:CDS
CAAATCTTACATTATATTGA+AGG 0.457143 6:-71223647 MsG0680033689.01.T01:CDS
GCTCAATATTACCGGAAAGT+TGG 0.465280 6:-71224076 MsG0680033689.01.T01:CDS
GAAATGCAAATACTTACTTA+GGG 0.469272 6:-71221043 MsG0680033689.01.T01:CDS
TGAATCAATAGCAGATTGAA+TGG 0.470756 6:+71223991 None:intergenic
CATACAACAATCCTATAAAT+GGG 0.474935 6:-71222009 MsG0680033689.01.T01:CDS
TACATCCAAGAGAGTAAGTT+GGG 0.475273 6:-71220059 MsG0680033689.01.T01:CDS
AAAATCTACAGCACCTTGTA+TGG 0.476421 6:+71221859 None:intergenic
GGGTTAAGGCTGGTATCTAT+AGG 0.476683 6:-71223934 MsG0680033689.01.T01:intron
ATGAGCCCAAACGATACAAA+TGG 0.486299 6:-71221095 MsG0680033689.01.T01:CDS
TCAACTACTATTGTGGAGAA+TGG 0.487692 6:+71224040 None:intergenic
TGCAGGCCAATCTTTGTTTG+AGG 0.510972 6:-71221828 MsG0680033689.01.T01:intron
GTTTCCATTAGGGTTAAGGC+TGG 0.513333 6:-71223944 MsG0680033689.01.T01:CDS
CTCTTGGATGTATCAGCACC+AGG 0.514454 6:+71220070 None:intergenic
TTATCAACACACCAGAAGAA+TGG 0.514926 6:-71219988 MsG0680033689.01.T01:CDS
TTTGTAGTAGTGTCTTCCAT+TGG 0.520834 6:+71221889 None:intergenic
ACACCATATCAGCTTTAAAA+CGG 0.522001 6:+71219953 None:intergenic
GTTGAATGGTATGATCCAAA+TGG 0.525356 6:-71223601 MsG0680033689.01.T01:CDS
TCTGCCAATATTGAGAAGGT+TGG 0.531727 6:+71223565 None:intergenic
TGATTGATCAACTACTATTG+TGG 0.533191 6:+71224033 None:intergenic
TTTCCGGTAATATTGAGCAT+TGG 0.541662 6:+71224081 None:intergenic
ATACATCCAAGAGAGTAAGT+TGG 0.558247 6:-71220060 MsG0680033689.01.T01:CDS
ATGTTCCATATCAGTTATTG+GGG 0.561252 6:-71221144 MsG0680033689.01.T01:CDS
ATAATGTAAGATTTGTTCTG+TGG 0.566377 6:+71223655 None:intergenic
AAATTGTAGAACCTAGTGGT+TGG 0.570289 6:-71220968 MsG0680033689.01.T01:CDS
AAATCTTACATTATATTGAA+GGG 0.580252 6:-71223646 MsG0680033689.01.T01:CDS
ATACTTACTTAGGGAGGCCA+TGG 0.584694 6:-71221034 MsG0680033689.01.T01:CDS
TACAAACTTTGTACCATACA+AGG 0.585567 6:-71221872 MsG0680033689.01.T01:CDS
ACTCTTGCATAAGGTCTCCA+TGG 0.592978 6:+71221017 None:intergenic
TAATGTAAGATTTGTTCTGT+GGG 0.596292 6:+71223656 None:intergenic
GACACATTGTATGATGCCAA+TGG 0.613515 6:-71221905 MsG0680033689.01.T01:CDS
CTCCATGAATCCCAACCACT+AGG 0.620269 6:+71220957 None:intergenic
TGCAGCTGTTAGTGGTGACA+AGG 0.621503 6:-71221963 MsG0680033689.01.T01:CDS
GTTGTCTGCCAATATTGAGA+AGG 0.637806 6:+71223561 None:intergenic
TCCAAAATTGTAGAACCTAG+TGG 0.653072 6:-71220972 MsG0680033689.01.T01:CDS
ATGCAAATACTTACTTAGGG+AGG 0.662976 6:-71221040 MsG0680033689.01.T01:CDS
GGTGGTTTCATAACAGCACA+AGG 0.674105 6:-71221122 MsG0680033689.01.T01:CDS
GAATCGAAAGTTACGTGCTG+TGG 0.702112 6:-71221987 MsG0680033689.01.T01:CDS
TGTTCCATATCAGTTATTGG+GGG 0.765889 6:-71221143 MsG0680033689.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTAAAATAAAATATACTA+GGG - Chr6:71223477-71223496 MsG0680033689.01.T01:intron 10.0%
!! ATAAAAAATGAACAATTATT+TGG - Chr6:71221464-71221483 MsG0680033689.01.T01:intron 10.0%
!! TTATTATTATTATTATGAGA+AGG + Chr6:71223597-71223616 None:intergenic 10.0%
!!! AATTTTTTTCTTTTTTTGAA+AGG - Chr6:71222355-71222374 MsG0680033689.01.T01:intron 10.0%
!!! CTTTTAGAAAAATAAATATT+TGG - Chr6:71223564-71223583 MsG0680033689.01.T01:CDS 10.0%
!! AAAAATATTAGTTATAGTCA+AGG + Chr6:71221574-71221593 None:intergenic 15.0%
!! AAAATATTAGTTATAGTCAA+GGG + Chr6:71221573-71221592 None:intergenic 15.0%
!! AAATCTTACATTATATTGAA+GGG - Chr6:71220463-71220482 MsG0680033689.01.T01:intron 15.0%
!! ACAATATTTAATAGATGATT+CGG + Chr6:71220951-71220970 None:intergenic 15.0%
!! ACTAAAAATTAACAAATTCA+AGG + Chr6:71222509-71222528 None:intergenic 15.0%
!! AGTTTCTTTAAATTTCTAAT+AGG - Chr6:71220232-71220251 MsG0680033689.01.T01:intron 15.0%
!! ATAAACACAAATATCTTAAT+GGG + Chr6:71223945-71223964 None:intergenic 15.0%
!! ATAAACATTAGGAAAAAAAA+TGG + Chr6:71223524-71223543 None:intergenic 15.0%
!! ATTATTTAATGTAAAGAGTA+AGG - Chr6:71222564-71222583 MsG0680033689.01.T01:intron 15.0%
!! CAGTTAAAATAAAATATACT+AGG - Chr6:71223476-71223495 MsG0680033689.01.T01:intron 15.0%
!! GTTTCTTTAAATTTCTAATA+GGG - Chr6:71220233-71220252 MsG0680033689.01.T01:intron 15.0%
!! TTATGTTCAATCAAATAAAT+AGG - Chr6:71223899-71223918 MsG0680033689.01.T01:intron 15.0%
!! TTTACAAACTATTGAAAATA+TGG - Chr6:71224086-71224105 MsG0680033689.01.T01:CDS 15.0%
!!! ACTTATTGATTTATAACTAT+AGG - Chr6:71221620-71221639 MsG0680033689.01.T01:intron 15.0%
!!! TCACATTTTAAATTGTATAA+GGG + Chr6:71221368-71221387 None:intergenic 15.0%
!!! TTCACATTTTAAATTGTATA+AGG + Chr6:71221369-71221388 None:intergenic 15.0%
!!! TTCATTTTTTATCTATCATT+AGG + Chr6:71221456-71221475 None:intergenic 15.0%
!!! TTCTTTAAAATAATATTGTG+TGG - Chr6:71220406-71220425 MsG0680033689.01.T01:intron 15.0%
!!! TTTTCATAATTAAAAAACTC+CGG - Chr6:71221745-71221764 MsG0680033689.01.T01:intron 15.0%
!!! TTTTTTTTTTGAGAGAATTT+TGG - Chr6:71220754-71220773 MsG0680033689.01.T01:intron 15.0%
!! AAATATTAGTTATAGTCAAG+GGG + Chr6:71221572-71221591 None:intergenic 20.0%
!! AAATCAATAAGTAAAAGATG+TGG + Chr6:71221612-71221631 None:intergenic 20.0%
!! AATGAAAACTTATACATAAG+TGG + Chr6:71221817-71221836 None:intergenic 20.0%
!! AATTGAATGCAATATTGAAT+AGG + Chr6:71220826-71220845 None:intergenic 20.0%
!! ATAAATGTGATTTCATACTA+AGG + Chr6:71223213-71223232 None:intergenic 20.0%
!! CAAATCTTACATTATATTGA+AGG - Chr6:71220462-71220481 MsG0680033689.01.T01:intron 20.0%
!! CAAGATTTAAATGAAACAAA+TGG + Chr6:71220708-71220727 None:intergenic 20.0%
!! CATTTGTTTCATTTAAATCT+TGG - Chr6:71220706-71220725 MsG0680033689.01.T01:intron 20.0%
!! GAGTCAATAAAAAACATTTA+AGG + Chr6:71220786-71220805 None:intergenic 20.0%
!! GATAAACACAAATATCTTAA+TGG + Chr6:71223946-71223965 None:intergenic 20.0%
!! TGACATTAGAAAAGAATATA+AGG + Chr6:71220900-71220919 None:intergenic 20.0%
!! TGGATTAACACTATATATTT+CGG - Chr6:71221243-71221262 MsG0680033689.01.T01:intron 20.0%
!! TTTAAAGATTGTCATATCTT+TGG - Chr6:71223044-71223063 MsG0680033689.01.T01:intron 20.0%
!!! AAACTTCACTTGTTTTTTTT+TGG - Chr6:71223813-71223832 MsG0680033689.01.T01:intron 20.0%
!!! AAACTTTTGAATAACTTTTG+AGG + Chr6:71220329-71220348 None:intergenic 20.0%
!!! ACAATAGAGTAATAACTTTT+TGG - Chr6:71221911-71221930 MsG0680033689.01.T01:CDS 20.0%
!!! ATATACTTTTTGCAGTTAAA+AGG - Chr6:71223388-71223407 MsG0680033689.01.T01:intron 20.0%
!!! ATATTTTATTTCCAACTTTC+CGG + Chr6:71220047-71220066 None:intergenic 20.0%
!!! CTTGGTTTAATGTTTTATTT+TGG - Chr6:71220724-71220743 MsG0680033689.01.T01:intron 20.0%
!!! GAAGTTTCTGAAAAAATTTA+GGG + Chr6:71223800-71223819 None:intergenic 20.0%
!!! TGAAGTTTCTGAAAAAATTT+AGG + Chr6:71223801-71223820 None:intergenic 20.0%
!!! TTGGGTAAAATATACTTTTT+AGG - Chr6:71223436-71223455 MsG0680033689.01.T01:intron 20.0%
! AAAAACGAACTATTGTTGAA+TGG - Chr6:71220494-71220513 MsG0680033689.01.T01:intron 25.0%
! AATATTAGTTATAGTCAAGG+GGG + Chr6:71221571-71221590 None:intergenic 25.0%
! AGTAGAATTGAATGATTTCA+AGG + Chr6:71220284-71220303 None:intergenic 25.0%
! ATACCAAGCATTAAAATTAG+AGG + Chr6:71221030-71221049 None:intergenic 25.0%
! ATAGGAGGAAAAAAAATCAA+AGG + Chr6:71220808-71220827 None:intergenic 25.0%
! ATGTATGATTCATGCATATT+TGG + Chr6:71221002-71221021 None:intergenic 25.0%
! CATACAACAATCCTATAAAT+GGG - Chr6:71222100-71222119 MsG0680033689.01.T01:intron 25.0%
! CTATAAATCATGAGTATAAG+TGG + Chr6:71220382-71220401 None:intergenic 25.0%
! CTTCATATCTATAAACTCAT+AGG - Chr6:71223869-71223888 MsG0680033689.01.T01:intron 25.0%
! GAAATGCAAATACTTACTTA+GGG - Chr6:71223066-71223085 MsG0680033689.01.T01:intron 25.0%
! GATAATCCTATTTGTGATTT+AGG - Chr6:71222529-71222548 MsG0680033689.01.T01:intron 25.0%
! GATATTTGTGTTTATCTACT+TGG - Chr6:71223950-71223969 MsG0680033689.01.T01:CDS 25.0%
! GTAGAATTGAATGATTTCAA+GGG + Chr6:71220283-71220302 None:intergenic 25.0%
! TAAATTGGTCAAATAAGCTT+TGG + Chr6:71221135-71221154 None:intergenic 25.0%
! TAACCTCAAAAACAAGTATT+TGG - Chr6:71221489-71221508 MsG0680033689.01.T01:intron 25.0%
! TACTAGTACACAATATAAGA+GGG - Chr6:71222451-71222470 MsG0680033689.01.T01:intron 25.0%
! TAGAGAAGATAAGTATAAAG+AGG - Chr6:71222403-71222422 MsG0680033689.01.T01:intron 25.0%
! TATTTACCTCAAACAAAGAT+TGG + Chr6:71222290-71222309 None:intergenic 25.0%
! TCATACAACAATCCTATAAA+TGG - Chr6:71222099-71222118 MsG0680033689.01.T01:intron 25.0%
! TCTTGAATTGAATTGGTATT+GGG - Chr6:71222482-71222501 MsG0680033689.01.T01:intron 25.0%
! TCTTTATACTTATCTTCTCT+AGG + Chr6:71222404-71222423 None:intergenic 25.0%
! TGAATTTGATCTTGAATGTT+AGG - Chr6:71221217-71221236 MsG0680033689.01.T01:intron 25.0%
! TGCAAAAACCATATTGTTAT+TGG - Chr6:71223412-71223431 MsG0680033689.01.T01:intron 25.0%
! TTGATTCCTAAATCACAAAT+AGG + Chr6:71222538-71222557 None:intergenic 25.0%
!! AAAAAGCAACTCTGAAAAAA+TGG + Chr6:71222173-71222192 None:intergenic 25.0%
!! AACTTTTTAACATATGCAAC+TGG + Chr6:71220616-71220635 None:intergenic 25.0%
!! ATAATGTAAGATTTGTTCTG+TGG + Chr6:71220457-71220476 None:intergenic 25.0%
!! ATTCAATCCCATTTTACAAT+AGG - Chr6:71220136-71220155 MsG0680033689.01.T01:intron 25.0%
!! GCAAAAACCATATTGTTATT+GGG - Chr6:71223413-71223432 MsG0680033689.01.T01:intron 25.0%
!! TAATGTAAGATTTGTTCTGT+GGG + Chr6:71220456-71220475 None:intergenic 25.0%
!! TCTTGAAATGAAATTTTGCA+GGG - Chr6:71223981-71224000 MsG0680033689.01.T01:CDS 25.0%
!!! AATAACTTTTGAGGATTTCA+AGG + Chr6:71220320-71220339 None:intergenic 25.0%
!!! AATCCTCTAATTTTAATGCT+TGG - Chr6:71221024-71221043 MsG0680033689.01.T01:CDS 25.0%
!!! ATAACTTTTGAGGATTTCAA+GGG + Chr6:71220319-71220338 None:intergenic 25.0%
!!! TTTTTCAGAGTTGCTTTTTA+TGG - Chr6:71222174-71222193 MsG0680033689.01.T01:intron 25.0%
AACTTTCGATTCCCATTTAT+AGG + Chr6:71222114-71222133 None:intergenic 30.0%
AATTAGCATACAGCTTTACT+AGG - Chr6:71223293-71223312 MsG0680033689.01.T01:intron 30.0%
ACAAATCCATTTGTATCGTT+TGG + Chr6:71223023-71223042 None:intergenic 30.0%
ACAATAGTAGTTGATCAATC+AGG - Chr6:71220078-71220097 MsG0680033689.01.T01:CDS 30.0%
ACCCAATTCCTATTGTAAAA+TGG + Chr6:71220147-71220166 None:intergenic 30.0%
AGATGTTCCATATCAGTTAT+TGG - Chr6:71222963-71222982 MsG0680033689.01.T01:intron 30.0%
ATAAGCATAACTCGGTATAT+AGG - Chr6:71221328-71221347 MsG0680033689.01.T01:intron 30.0%
ATGCATGTCTTGAATTGAAT+TGG - Chr6:71222475-71222494 MsG0680033689.01.T01:intron 30.0%
ATGTTCCATATCAGTTATTG+GGG - Chr6:71222965-71222984 MsG0680033689.01.T01:intron 30.0%
ATTAGCATACAGCTTTACTA+GGG - Chr6:71223294-71223313 MsG0680033689.01.T01:intron 30.0%
CAAATCCATTTGTATCGTTT+GGG + Chr6:71223022-71223041 None:intergenic 30.0%
CATTTATCTTTCTCTTGGTT+GGG - Chr6:71219989-71220008 MsG0680033689.01.T01:CDS 30.0%
CCCAATTCCTATTGTAAAAT+GGG + Chr6:71220146-71220165 None:intergenic 30.0%
GATGTTCCATATCAGTTATT+GGG - Chr6:71222964-71222983 MsG0680033689.01.T01:intron 30.0%
GGAAATGCAAATACTTACTT+AGG - Chr6:71223065-71223084 MsG0680033689.01.T01:intron 30.0%
GGTGTGTAAGATAATTTACA+AGG + Chr6:71222331-71222350 None:intergenic 30.0%
GTACTAGTACACAATATAAG+AGG - Chr6:71222450-71222469 MsG0680033689.01.T01:intron 30.0%
GTCTTGAATTGAATTGGTAT+TGG - Chr6:71222481-71222500 MsG0680033689.01.T01:intron 30.0%
TAAGAATCTTTGGTAGAACT+TGG - Chr6:71221514-71221533 MsG0680033689.01.T01:intron 30.0%
TAAGCATAACTCGGTATATA+GGG - Chr6:71221329-71221348 MsG0680033689.01.T01:intron 30.0%
TACAAACTTTGTACCATACA+AGG - Chr6:71222237-71222256 MsG0680033689.01.T01:intron 30.0%
TGAATCAATAGCAGATTGAA+TGG + Chr6:71220121-71220140 None:intergenic 30.0%
TGAATGCAATATTGAATAGG+AGG + Chr6:71220823-71220842 None:intergenic 30.0%
TGATAATTGATCCATTCTTC+TGG + Chr6:71224135-71224154 None:intergenic 30.0%
TGATTGATCAACTACTATTG+TGG + Chr6:71220079-71220098 None:intergenic 30.0%
TGTGTAAAGAAATTGAGTGT+GGG + Chr6:71222868-71222887 None:intergenic 30.0%
TTAGTAGAGCAAAGAATCTA+GGG + Chr6:71222836-71222855 None:intergenic 30.0%
TTTAGTAGAGCAAAGAATCT+AGG + Chr6:71222837-71222856 None:intergenic 30.0%
! AAACCATATTGTTATTGGGT+TGG - Chr6:71223417-71223436 MsG0680033689.01.T01:intron 30.0%
! AAAGTGGAGATTTTATTCTG+TGG + Chr6:71221056-71221075 None:intergenic 30.0%
! AACCATATTGTTATTGGGTT+GGG - Chr6:71223418-71223437 MsG0680033689.01.T01:intron 30.0%
! AAGTGGAGATTTTATTCTGT+GGG + Chr6:71221055-71221074 None:intergenic 30.0%
! AGTAAGTTGGGCTAAAAAAT+TGG - Chr6:71224062-71224081 MsG0680033689.01.T01:CDS 30.0%
! ATGTCAGATGTATGAGTTTT+CGG - Chr6:71220575-71220594 MsG0680033689.01.T01:intron 30.0%
! CCCATTTTACAATAGGAATT+GGG - Chr6:71220143-71220162 MsG0680033689.01.T01:intron 30.0%
! GTCTTGAAATGAAATTTTGC+AGG - Chr6:71223980-71223999 MsG0680033689.01.T01:CDS 30.0%
! TATGCTGAGTATGGAAATTT+TGG - Chr6:71224015-71224034 MsG0680033689.01.T01:CDS 30.0%
! TCCCATTTTACAATAGGAAT+TGG - Chr6:71220142-71220161 MsG0680033689.01.T01:intron 30.0%
! TTCTACAATTTTGGACATGT+TGG + Chr6:71223132-71223151 None:intergenic 30.0%
!! ATACATAAGTGGAAGTATTG+AGG + Chr6:71221806-71221825 None:intergenic 30.0%
!! GTATTTGGTGTAAGAATCTT+TGG - Chr6:71221504-71221523 MsG0680033689.01.T01:intron 30.0%
!! TAAAAAAGCACTCTTGCATA+AGG + Chr6:71223104-71223123 None:intergenic 30.0%
!! TCACTGCACAATTTTTAGAA+TGG + Chr6:71223236-71223255 None:intergenic 30.0%
!!! AAAATCTCCACTTTTTATCG+TGG - Chr6:71221062-71221081 MsG0680033689.01.T01:CDS 30.0%
!!! AAATCTCCACTTTTTATCGT+GGG - Chr6:71221063-71221082 MsG0680033689.01.T01:CDS 30.0%
!!! ACACCAAATACTTGTTTTTG+AGG + Chr6:71221495-71221514 None:intergenic 30.0%
!!! CTTCACTTGTTTTTTTTTGG+AGG - Chr6:71223816-71223835 MsG0680033689.01.T01:intron 30.0%
AAAATCTACAGCACCTTGTA+TGG + Chr6:71222253-71222272 None:intergenic 35.0%
AAATTGTAGAACCTAGTGGT+TGG - Chr6:71223141-71223160 MsG0680033689.01.T01:intron 35.0%
AAGCATAACTCGGTATATAG+GGG - Chr6:71221330-71221349 MsG0680033689.01.T01:intron 35.0%
AAGCCAATGCTCAATATTAC+CGG - Chr6:71220025-71220044 MsG0680033689.01.T01:CDS 35.0%
AAGTCCAACCTTCTCAATAT+TGG - Chr6:71220540-71220559 MsG0680033689.01.T01:intron 35.0%
AATTGTAGAACCTAGTGGTT+GGG - Chr6:71223142-71223161 MsG0680033689.01.T01:intron 35.0%
AGAACCTATTCTCATTAGAG+CGG + Chr6:71222701-71222720 None:intergenic 35.0%
ATAACTTACTCACGACTATC+AGG + Chr6:71223179-71223198 None:intergenic 35.0%
ATACATCCAAGAGAGTAAGT+TGG - Chr6:71224049-71224068 MsG0680033689.01.T01:CDS 35.0%
ATAGGAATTGGGTTTCCATT+AGG - Chr6:71220154-71220173 MsG0680033689.01.T01:intron 35.0%
ATGCAAATACTTACTTAGGG+AGG - Chr6:71223069-71223088 MsG0680033689.01.T01:intron 35.0%
ATTCTTCCCACGATAAAAAG+TGG + Chr6:71221072-71221091 None:intergenic 35.0%
CATTTCTCATCCGATAACAT+TGG - Chr6:71222601-71222620 MsG0680033689.01.T01:intron 35.0%
CCAACCAAGAGAAAGATAAA+TGG + Chr6:71219991-71220010 None:intergenic 35.0%
CCATTTATCTTTCTCTTGGT+TGG - Chr6:71219988-71220007 MsG0680033689.01.T01:CDS 35.0%
CTAACTACATATGCTGAGTA+TGG - Chr6:71224006-71224025 MsG0680033689.01.T01:CDS 35.0%
CTCTAATGAGAATAGGTTCT+TGG - Chr6:71222701-71222720 MsG0680033689.01.T01:intron 35.0%
GGTTCCATTTATCTTTCTCT+TGG - Chr6:71219984-71220003 MsG0680033689.01.T01:CDS 35.0%
GTAGTTGATCAATCAGGAAA+TGG - Chr6:71220084-71220103 MsG0680033689.01.T01:CDS 35.0%
GTGTAAAGAAATTGAGTGTG+GGG + Chr6:71222867-71222886 None:intergenic 35.0%
GTGTCTACATAAGCATAACT+CGG - Chr6:71221320-71221339 MsG0680033689.01.T01:intron 35.0%
GTGTGTAAAGAAATTGAGTG+TGG + Chr6:71222869-71222888 None:intergenic 35.0%
GTTGAATGGTATGATCCAAA+TGG - Chr6:71220508-71220527 MsG0680033689.01.T01:intron 35.0%
TACATCCAAGAGAGTAAGTT+GGG - Chr6:71224050-71224069 MsG0680033689.01.T01:CDS 35.0%
TACATTATATTGAAGGGAGC+TGG - Chr6:71220469-71220488 MsG0680033689.01.T01:intron 35.0%
TACCCAACCCAATAACAATA+TGG + Chr6:71223423-71223442 None:intergenic 35.0%
TAGGAATTGGGTTTCCATTA+GGG - Chr6:71220155-71220174 MsG0680033689.01.T01:intron 35.0%
TCAACTACTATTGTGGAGAA+TGG + Chr6:71220072-71220091 None:intergenic 35.0%
TCATCCGATAACATTGGAAA+TGG - Chr6:71222607-71222626 MsG0680033689.01.T01:intron 35.0%
TCCAAAATTGTAGAACCTAG+TGG - Chr6:71223137-71223156 MsG0680033689.01.T01:intron 35.0%
TGAGGTTCGAATACCAATTA+TGG + Chr6:71221788-71221807 None:intergenic 35.0%
TGATCTTGAATGTTAGGACT+TGG - Chr6:71221223-71221242 MsG0680033689.01.T01:intron 35.0%
TGTTCCATATCAGTTATTGG+GGG - Chr6:71222966-71222985 MsG0680033689.01.T01:intron 35.0%
TTATCAACACACCAGAAGAA+TGG - Chr6:71224121-71224140 MsG0680033689.01.T01:CDS 35.0%
TTTCCGGTAATATTGAGCAT+TGG + Chr6:71220031-71220050 None:intergenic 35.0%
TTTGTAGTAGTGTCTTCCAT+TGG + Chr6:71222223-71222242 None:intergenic 35.0%
! ACCACTAGGTTCTACAATTT+TGG + Chr6:71223141-71223160 None:intergenic 35.0%
! GATTCATGCATATTTGGAAC+AGG + Chr6:71220996-71221015 None:intergenic 35.0%
! TGTCAGATGTATGAGTTTTC+GGG - Chr6:71220576-71220595 MsG0680033689.01.T01:intron 35.0%
!! AGTGCCATTTCCAATGTTAT+CGG + Chr6:71222614-71222633 None:intergenic 35.0%
!! GGTGCTGTAGATTTTATCTT+TGG - Chr6:71222258-71222277 MsG0680033689.01.T01:intron 35.0%
!! GTAGATTTTATCTTTGGTGC+AGG - Chr6:71222264-71222283 MsG0680033689.01.T01:intron 35.0%
ATAACTCGGTATATAGGGGT+CGG - Chr6:71221334-71221353 MsG0680033689.01.T01:intron 40.0%
ATCTTTCTCTTGGTTGGGTT+AGG - Chr6:71219994-71220013 MsG0680033689.01.T01:CDS 40.0%
ATGAGCCCAAACGATACAAA+TGG - Chr6:71223014-71223033 MsG0680033689.01.T01:intron 40.0%
CCACTCACCTTTCATCTTTA+AGG - Chr6:71222726-71222745 MsG0680033689.01.T01:intron 40.0%
CCTTAAAGATGAAAGGTGAG+TGG + Chr6:71222729-71222748 None:intergenic 40.0%
GACACATTGTATGATGCCAA+TGG - Chr6:71222204-71222223 MsG0680033689.01.T01:intron 40.0%
GCTCAATATTACCGGAAAGT+TGG - Chr6:71220033-71220052 MsG0680033689.01.T01:CDS 40.0%
GTGTTAAAACTAGAGCGATG+AGG + Chr6:71222765-71222784 None:intergenic 40.0%
GTTAAGCATGACGCCATAAT+TGG - Chr6:71221772-71221791 MsG0680033689.01.T01:intron 40.0%
GTTGTCTGCCAATATTGAGA+AGG + Chr6:71220551-71220570 None:intergenic 40.0%
TCTGCCAATATTGAGAAGGT+TGG + Chr6:71220547-71220566 None:intergenic 40.0%
TTCTAATAGGGCAAGTCCAA+GGG - Chr6:71220245-71220264 MsG0680033689.01.T01:intron 40.0%
TTGGGTTTCCATTAGGGTTA+AGG - Chr6:71220161-71220180 MsG0680033689.01.T01:intron 40.0%
TTTAGCCCAACTTACTCTCT+TGG + Chr6:71224058-71224077 None:intergenic 40.0%
TTTCTAATAGGGCAAGTCCA+AGG - Chr6:71220244-71220263 MsG0680033689.01.T01:intron 40.0%
! AGGGATACTTGAGTTGCAAA+AGG - Chr6:71223313-71223332 MsG0680033689.01.T01:intron 40.0%
! GAGTATGGAAATTTTGGACC+TGG - Chr6:71224021-71224040 MsG0680033689.01.T01:CDS 40.0%
! GCAAAGAATCTAGGGTAAGA+TGG + Chr6:71222828-71222847 None:intergenic 40.0%
!!! GAGAAGGTTGGACTTTTTTC+AGG + Chr6:71220535-71220554 None:intergenic 40.0%
!!! GGACTTTTTTCAGGTCCATT+TGG + Chr6:71220526-71220545 None:intergenic 40.0%
AACCTAGTGGTTGGGATTCA+TGG - Chr6:71223150-71223169 MsG0680033689.01.T01:intron 45.0%
AAGTGTGGAACATCCGAAGT+TGG + Chr6:71222641-71222660 None:intergenic 45.0%
AATGGCACTCCATCCAACTT+CGG - Chr6:71222625-71222644 MsG0680033689.01.T01:intron 45.0%
ACCACCCCCAATAACTGATA+TGG + Chr6:71222973-71222992 None:intergenic 45.0%
ACGAGGGCCTTAAAGATGAA+AGG + Chr6:71222736-71222755 None:intergenic 45.0%
ACTCTTGCATAAGGTCTCCA+TGG + Chr6:71223095-71223114 None:intergenic 45.0%
AGGGTTTATTTGCATGCCCT+TGG + Chr6:71220264-71220283 None:intergenic 45.0%
ATACTTACTTAGGGAGGCCA+TGG - Chr6:71223075-71223094 MsG0680033689.01.T01:intron 45.0%
CCACACTTGTAGTCGATACT+TGG - Chr6:71222653-71222672 MsG0680033689.01.T01:intron 45.0%
GAATCGAAAGTTACGTGCTG+TGG - Chr6:71222122-71222141 MsG0680033689.01.T01:intron 45.0%
GATACCAGCCTTAACCCTAA+TGG + Chr6:71220172-71220191 None:intergenic 45.0%
GGGTTAAGGCTGGTATCTAT+AGG - Chr6:71220175-71220194 MsG0680033689.01.T01:intron 45.0%
GGTGGTTTCATAACAGCACA+AGG - Chr6:71222987-71223006 MsG0680033689.01.T01:intron 45.0%
GTTGCCGCTCTAATGAGAAT+AGG - Chr6:71222694-71222713 MsG0680033689.01.T01:intron 45.0%
GTTTCCATTAGGGTTAAGGC+TGG - Chr6:71220165-71220184 MsG0680033689.01.T01:intron 45.0%
TAACTCGGTATATAGGGGTC+GGG - Chr6:71221335-71221354 MsG0680033689.01.T01:intron 45.0%
TCCATATCAGTTATTGGGGG+TGG - Chr6:71222969-71222988 MsG0680033689.01.T01:intron 45.0%
TCGATACTTGGATCCGAAAG+TGG - Chr6:71222665-71222684 MsG0680033689.01.T01:intron 45.0%
! ATCTAGGGTAAGATGGCTCA+AGG + Chr6:71222821-71222840 None:intergenic 45.0%
! GGCGTCATGCTTAACTTTTC+CGG + Chr6:71221767-71221786 None:intergenic 45.0%
! TGCAGGCCAATCTTTGTTTG+AGG - Chr6:71222281-71222300 MsG0680033689.01.T01:intron 45.0%
!! CCAAGTATCGACTACAAGTG+TGG + Chr6:71222656-71222675 None:intergenic 45.0%
!! AAAAAAAGAAAAAAATTATA+TGG + Chr6:71222352-71222371 None:intergenic 5.0%
!! ATAAATTTATTATAAACATT+AGG + Chr6:71223535-71223554 None:intergenic 5.0%
!! ATATATTAAATGTAATAAAT+TGG + Chr6:71221150-71221169 None:intergenic 5.0%
AACTCGGTATATAGGGGTCG+GGG - Chr6:71221336-71221355 MsG0680033689.01.T01:intron 50.0%
AGCGATGAGGAATGCTACGA+GGG + Chr6:71222752-71222771 None:intergenic 50.0%
AGGGTAAGATGGCTCAAGGA+AGG + Chr6:71222817-71222836 None:intergenic 50.0%
CTCCATGAATCCCAACCACT+AGG + Chr6:71223155-71223174 None:intergenic 50.0%
CTCTTGGATGTATCAGCACC+AGG + Chr6:71224042-71224061 None:intergenic 50.0%
GTGGAACATCCGAAGTTGGA+TGG + Chr6:71222637-71222656 None:intergenic 50.0%
TCTCATTAGAGCGGCAACGA+TGG + Chr6:71222692-71222711 None:intergenic 50.0%
TGCAGCTGTTAGTGGTGACA+AGG - Chr6:71222146-71222165 MsG0680033689.01.T01:intron 50.0%
CGGCAACGATGGACCACTTT+CGG + Chr6:71222681-71222700 None:intergenic 55.0%
GAGCGATGAGGAATGCTACG+AGG + Chr6:71222753-71222772 None:intergenic 55.0%
GCTGTGGCTGCAGCTGTTAG+TGG - Chr6:71222138-71222157 MsG0680033689.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 71219967 71224164 71219967 ID=MsG0680033689.01;Name=MsG0680033689.01
Chr6 mRNA 71219967 71224164 71219967 ID=MsG0680033689.01.T01;Parent=MsG0680033689.01;Name=MsG0680033689.01.T01;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|5|0|328
Chr6 exon 71223935 71224164 71223935 ID=MsG0680033689.01.T01:exon:39378;Parent=MsG0680033689.01.T01
Chr6 exon 71223534 71223693 71223534 ID=MsG0680033689.01.T01:exon:39377;Parent=MsG0680033689.01.T01
Chr6 exon 71221829 71222035 71221829 ID=MsG0680033689.01.T01:exon:39376;Parent=MsG0680033689.01.T01
Chr6 exon 71220942 71221168 71220942 ID=MsG0680033689.01.T01:exon:39375;Parent=MsG0680033689.01.T01
Chr6 exon 71219967 71220129 71219967 ID=MsG0680033689.01.T01:exon:39374;Parent=MsG0680033689.01.T01
Chr6 CDS 71223935 71224164 71223935 ID=MsG0680033689.01.T01:cds;Parent=MsG0680033689.01.T01
Chr6 CDS 71223534 71223693 71223534 ID=MsG0680033689.01.T01:cds;Parent=MsG0680033689.01.T01
Chr6 CDS 71221829 71222035 71221829 ID=MsG0680033689.01.T01:cds;Parent=MsG0680033689.01.T01
Chr6 CDS 71220942 71221168 71220942 ID=MsG0680033689.01.T01:cds;Parent=MsG0680033689.01.T01
Chr6 CDS 71219967 71220129 71219967 ID=MsG0680033689.01.T01:cds;Parent=MsG0680033689.01.T01
Gene Sequence

>MsG0680033689.01.T01

ATGTTTCGTTTGTGTTTGGTTCCATTTATCTTTCTCTTGGTTGGGTTAGGAGTAGAAGAAGCCAATGCTCAATATTACCGGAAAGTTGGAAATAAAATATTTCCATTCTCCACAATAGTAGTTGATCAATCAGGAAATGGACACTTTACTTCCATTCAATCTGCTATTGATTCAATCCCATTTTACAATAGGAATTGGGTTTCCATTAGGGTTAAGGCTGGTATCTATAGAGAAAAAGTTGTCATCCCACAGAACAAATCTTACATTATATTGAAGGGAGCTGGAAAAAAACGAACTATTGTTGAATGGTATGATCCAAATGGACCTGAAAAAAGTCCAACCTTCTCAATATTGGCAGACAACATTCATGTCAGATGTATGAGTTTTCGGAACTCATACAACAATCCTATAAATGGGAATCGAAAGTTACGTGCTGTGGCTGCAGCTGTTAGTGGTGACAAGGTCCATTTTTTCAGAGTTGCTTTTTATGGCTATCAAGACACATTGTATGATGCCAATGGAAGACACTACTACAAACTTTGTACCATACAAGGTGCTGTAGATTTTATCTTTGGTGCAGGCCAATCTTTGTTTGAGAGATGTTCCATATCAGTTATTGGGGGTGGTTTCATAACAGCACAAGGTAGAATGAGCCCAAACGATACAAATGGATTTGTATTTAAAGATTGTCATATCTTTGGAAATGCAAATACTTACTTAGGGAGGCCATGGAGACCTTATGCAAGAGTGCTTTTTTACAAGACCAACATGTCCAAAATTGTAGAACCTAGTGGTTGGGATTCATGGAGTCCTGATAGTCGTGAGGATCTAACTACATATGCTGAGTATGGAAATTTTGGACCTGGTGCTGATACATCCAAGAGAGTAAGTTGGGCTAAAAAATTGGATTTACAAACTATTGAAAATATGGCAAGTATGAACTTTATCAACACACCAGAAGAATGGATCAATTATCAACCGTTTTAA
Protein sequence

>MsG0680033689.01.T01

MFRLCLVPFIFLLVGLGVEEANAQYYRKVGNKIFPFSTIVVDQSGNGHFTSIQSAIDSIPFYNRNWVSIRVKAGIYREKVVIPQNKSYIILKGAGKKRTIVEWYDPNGPEKSPTFSILADNIHVRCMSFRNSYNNPINGNRKLRAVAAAVSGDKVHFFRVAFYGYQDTLYDANGRHYYKLCTIQGAVDFIFGAGQSLFERCSISVIGGGFITAQGRMSPNDTNGFVFKDCHIFGNANTYLGRPWRPYARVLFYKTNMSKIVEPSGWDSWSPDSREDLTTYAEYGNFGPGADTSKRVSWAKKLDLQTIENMASMNFINTPEEWINYQPF*