AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680033884.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033884.01.T01 MTR_6g465530 91.099 191 17 0 4 194 8 198 8.88e-113 320
MsG0680033884.01.T01 MTR_6g465510 86.567 201 17 2 4 194 8 208 2.77e-103 296
MsG0680033884.01.T01 MTR_6g465420 76.471 187 37 3 4 188 29 210 1.04e-100 292
MsG0680033884.01.T01 MTR_6g465460 77.660 188 32 4 4 188 29 209 2.06e-99 288
MsG0680033884.01.T01 MTR_6g465450 79.255 188 31 3 4 188 29 211 6.89e-97 281
MsG0680033884.01.T01 MTR_6g466000 70.500 200 46 4 4 194 32 227 5.84e-95 276
MsG0680033884.01.T01 MTR_6g465430 76.064 188 36 4 4 188 29 210 7.71e-93 271
MsG0680033884.01.T01 MTR_6g465690 71.134 194 42 3 4 189 38 225 3.28e-89 262
MsG0680033884.01.T01 MTR_6g466130 72.396 192 48 2 4 194 41 228 3.06e-88 259
MsG0680033884.01.T01 MTR_1g101600 62.105 190 62 2 7 194 19 200 2.91e-70 212
MsG0680033884.01.T01 MTR_6g465850 51.852 243 66 4 3 194 37 279 6.39e-69 211
MsG0680033884.01.T01 MTR_6g465990 59.000 200 49 5 4 194 18 193 2.29e-66 202
MsG0680033884.01.T01 MTR_6g466020 57.219 187 53 3 6 191 20 180 7.57e-61 187
MsG0680033884.01.T01 MTR_5g010930 46.635 208 81 5 7 194 27 224 1.60e-53 171
MsG0680033884.01.T01 MTR_5g010940 48.500 200 87 5 7 194 32 227 2.05e-50 162
MsG0680033884.01.T01 MTR_4g102660 51.500 200 82 6 7 194 22 218 1.41e-49 160
MsG0680033884.01.T01 MTR_5g010910 48.718 195 84 5 12 194 32 222 1.44e-49 160
MsG0680033884.01.T01 MTR_8g006410 68.750 80 25 0 24 103 47 126 1.39e-34 121
MsG0680033884.01.T01 MTR_3g110205 55.238 105 46 1 24 128 38 141 7.52e-34 119
MsG0680033884.01.T01 MTR_2g085015 39.894 188 92 6 23 192 41 225 9.99e-33 117
MsG0680033884.01.T01 MTR_7g046260 58.511 94 32 1 17 103 42 135 1.53e-31 114
MsG0680033884.01.T01 MTR_7g117690 59.091 88 36 0 16 103 15 102 1.36e-30 110
MsG0680033884.01.T01 MTR_5g012910 62.025 79 30 0 25 103 24 102 1.46e-30 110
MsG0680033884.01.T01 MTR_8g013860 63.291 79 29 0 25 103 43 121 1.22e-29 108
MsG0680033884.01.T01 MTR_8g102800 56.566 99 43 0 19 117 27 125 1.93e-29 109
MsG0680033884.01.T01 MTR_2g101340 50.926 108 47 2 2 103 8 115 5.66e-29 107
MsG0680033884.01.T01 MTR_6g088405 62.821 78 29 0 26 103 41 118 5.80e-29 107
MsG0680033884.01.T01 MTR_8g027465 56.383 94 38 1 13 103 23 116 2.67e-28 104
MsG0680033884.01.T01 MTR_4g100650 61.538 78 30 0 26 103 71 148 1.05e-26 102
MsG0680033884.01.T01 MTR_4g102670 58.228 79 32 1 25 103 11 88 4.97e-26 98.6
MsG0680033884.01.T01 MTR_4g035430 56.627 83 36 0 28 110 31 113 1.25e-24 96.3
MsG0680033884.01.T01 MTR_6g088425 61.628 86 33 0 25 110 45 130 6.21e-24 94.7
MsG0680033884.01.T01 MTR_1g006660 58.696 92 34 1 16 103 30 121 5.91e-23 92.8
MsG0680033884.01.T01 MTR_5g008550 46.535 101 52 1 29 127 21 121 5.14e-20 83.6
MsG0680033884.01.T01 MTR_5g008590 54.945 91 41 0 29 119 11 101 3.57e-19 81.3
MsG0680033884.01.T01 MTR_2g435590 52.000 75 33 1 13 87 83 154 8.15e-18 79.0
MsG0680033884.01.T01 MTR_1g060910 35.838 173 70 7 13 169 3 150 8.83e-18 77.4
MsG0680033884.01.T01 MTR_5g008470 46.429 84 45 0 31 114 77 160 9.32e-18 77.4
MsG0680033884.01.T01 MTR_1g014780 56.667 60 26 0 28 87 37 96 1.70e-17 77.8
MsG0680033884.01.T01 MTR_7g020980 45.679 81 44 0 25 105 47 127 2.07e-17 76.3
MsG0680033884.01.T01 MTR_3g102100 40.164 122 65 4 14 133 31 146 2.16e-17 76.3
MsG0680033884.01.T01 MTR_5g083340 62.069 58 22 0 29 86 85 142 2.41e-17 79.3
MsG0680033884.01.T01 MTR_8g090350 46.237 93 45 2 13 100 95 187 3.70e-17 77.8
MsG0680033884.01.T01 MTR_1g101550 42.958 142 74 4 29 165 57 196 4.61e-17 76.6
MsG0680033884.01.T01 MTR_7g021010 47.126 87 45 1 22 107 4 90 1.22e-16 73.2
MsG0680033884.01.T01 MTR_1g019110 37.374 99 59 1 29 127 44 139 1.30e-16 74.3
MsG0680033884.01.T01 MTR_2g105380 51.471 68 33 0 17 84 105 172 1.47e-16 77.0
MsG0680033884.01.T01 MTR_3g074130 59.322 59 24 0 28 86 149 207 2.28e-16 76.3
MsG0680033884.01.T01 MTR_7g021010 45.783 83 45 0 25 107 47 129 2.57e-16 73.6
MsG0680033884.01.T01 MTR_3g105510 44.706 85 47 0 29 113 37 121 2.59e-16 74.7
MsG0680033884.01.T01 MTR_1g090170 55.556 63 28 0 24 86 147 209 2.74e-16 75.9
MsG0680033884.01.T01 MTR_2g043030 30.814 172 109 4 28 194 18 184 2.97e-16 73.9
MsG0680033884.01.T01 MTR_1g014860 50.000 66 33 0 22 87 15 80 3.52e-16 73.9
MsG0680033884.01.T01 MTR_5g062700 59.322 59 24 0 28 86 172 230 3.52e-16 75.9
MsG0680033884.01.T01 MTR_1g087920 50.000 68 34 0 19 86 67 134 3.64e-16 75.1
MsG0680033884.01.T01 MTR_1g014820 43.478 92 48 1 28 115 26 117 3.84e-16 74.7
MsG0680033884.01.T01 MTR_1g090170 55.556 63 28 0 24 86 234 296 5.20e-16 75.5
MsG0680033884.01.T01 MTR_5g083330 52.055 73 35 0 14 86 20 92 5.29e-16 74.7
MsG0680033884.01.T01 MTR_2g089170 49.367 79 39 1 29 106 65 143 6.55e-16 72.8
MsG0680033884.01.T01 MTR_2g043050 44.706 85 47 0 28 112 18 102 6.67e-16 73.2
MsG0680033884.01.T01 MTR_8g092460 56.667 60 26 0 29 88 145 204 7.85e-16 74.3
MsG0680033884.01.T01 MTR_2g090235 59.322 59 24 0 28 86 217 275 8.32e-16 75.1
MsG0680033884.01.T01 MTR_5g016750 38.835 103 56 1 29 131 25 120 9.93e-16 72.0
MsG0680033884.01.T01 MTR_4g086220 60.714 56 22 0 29 84 96 151 1.16e-15 72.8
MsG0680033884.01.T01 MTR_3g053690 59.375 64 23 1 21 84 22 82 1.24e-15 72.8
MsG0680033884.01.T01 MTR_1g014800 53.333 60 28 0 28 87 30 89 1.54e-15 72.4
MsG0680033884.01.T01 MTR_1g028560 57.895 57 24 0 29 85 115 171 1.82e-15 73.6
MsG0680033884.01.T01 MTR_4g078710 36.134 119 68 2 13 131 14 124 1.84e-15 72.0
MsG0680033884.01.T01 MTR_2g078680 60.714 56 22 0 29 84 31 86 1.89e-15 71.6
MsG0680033884.01.T01 MTR_5g082950 62.500 56 21 0 29 84 66 121 2.60e-15 73.2
MsG0680033884.01.T01 MTR_4g086160 58.929 56 23 0 29 84 96 151 4.15e-15 71.2
MsG0680033884.01.T01 MTR_4g086190 58.929 56 23 0 29 84 96 151 4.37e-15 71.2
MsG0680033884.01.T01 MTR_4g086165 58.929 56 23 0 29 84 82 137 5.39e-15 70.5
MsG0680033884.01.T01 MTR_3g105480 44.578 83 46 0 31 113 33 115 5.45e-15 70.9
MsG0680033884.01.T01 MTR_1g074310 54.839 62 27 1 29 89 21 82 5.54e-15 68.9
MsG0680033884.01.T01 MTR_8g022820 51.515 66 32 0 19 84 114 179 5.72e-15 72.4
MsG0680033884.01.T01 MTR_8g022820 51.515 66 32 0 19 84 114 179 5.72e-15 72.4
MsG0680033884.01.T01 MTR_8g022820 51.515 66 32 0 19 84 113 178 5.75e-15 72.4
MsG0680033884.01.T01 MTR_0939s0010 58.929 56 23 0 29 84 65 120 5.97e-15 70.1
MsG0680033884.01.T01 MTR_7g028925 50.000 66 30 1 22 87 22 84 7.13e-15 67.4
MsG0680033884.01.T01 MTR_2g015050 52.174 69 32 1 17 84 122 190 8.86e-15 71.2
MsG0680033884.01.T01 MTR_7g092190 60.714 56 22 0 29 84 30 85 1.05e-14 70.9
MsG0680033884.01.T01 MTR_4g054740 42.697 89 45 2 1 88 74 157 1.41e-14 70.1
MsG0680033884.01.T01 MTR_2g438180 56.452 62 26 1 29 89 14 75 2.27e-14 67.4
MsG0680033884.01.T01 MTR_4g114570 57.143 56 24 0 29 84 7 62 3.07e-14 68.6
MsG0680033884.01.T01 MTR_2g014340 57.143 56 24 0 29 84 19 74 4.42e-14 68.2
MsG0680033884.01.T01 MTR_3g106290 60.714 56 22 0 29 84 8 63 5.21e-14 67.4
MsG0680033884.01.T01 MTR_4g010640 57.143 56 24 0 29 84 7 62 5.43e-14 68.2
MsG0680033884.01.T01 MTR_1g048610 56.140 57 24 1 29 84 89 145 6.21e-14 68.2
MsG0680033884.01.T01 MTR_4g008860 52.778 72 31 1 29 100 8 76 6.81e-14 67.4
MsG0680033884.01.T01 MTR_5g009620 50.667 75 27 2 16 84 97 167 7.11e-14 68.9
MsG0680033884.01.T01 MTR_2g103700 53.333 60 28 0 29 88 7 66 8.88e-14 66.6
MsG0680033884.01.T01 MTR_2g043040 42.353 85 49 0 28 112 18 102 1.22e-13 67.4
MsG0680033884.01.T01 MTR_1g070070 56.140 57 24 1 29 84 21 77 1.47e-13 65.5
MsG0680033884.01.T01 MTR_2g014300 58.929 56 23 0 29 84 15 70 1.50e-13 65.9
MsG0680033884.01.T01 MTR_2g043020 40.659 91 54 0 28 118 18 108 1.88e-13 66.2
MsG0680033884.01.T01 MTR_1g074230 57.895 57 23 1 29 84 19 75 1.94e-13 64.7
MsG0680033884.01.T01 MTR_4g100420 57.895 57 23 1 29 84 157 213 2.10e-13 67.4
MsG0680033884.01.T01 MTR_3g090760 33.871 124 82 0 29 152 113 236 2.14e-13 67.8
MsG0680033884.01.T01 MTR_2g016730 41.758 91 47 2 18 107 11 96 2.27e-13 67.8
MsG0680033884.01.T01 MTR_4g100450 46.250 80 42 1 6 84 131 210 2.41e-13 67.4
MsG0680033884.01.T01 MTR_4g054360 45.122 82 39 2 8 88 108 184 5.17e-13 66.2
MsG0680033884.01.T01 MTR_3g072610 48.352 91 39 3 29 113 25 113 7.23e-13 65.1
MsG0680033884.01.T01 MTR_5g085100 48.684 76 36 1 9 84 29 101 1.17e-12 65.1
MsG0680033884.01.T01 MTR_4g088005 47.826 69 35 1 17 84 45 113 1.47e-12 62.0
MsG0680033884.01.T01 MTR_5g085070 41.414 99 58 0 29 127 51 149 1.50e-12 65.1
MsG0680033884.01.T01 MTR_5g008540 47.541 61 32 0 31 91 26 86 2.01e-12 61.2
MsG0680033884.01.T01 MTR_8g069360 53.571 56 26 0 29 84 44 99 2.29e-12 65.1
MsG0680033884.01.T01 MTR_1g090290 51.613 62 27 2 24 84 110 169 2.47e-12 63.2
MsG0680033884.01.T01 MTR_4g111915 47.458 59 31 0 29 87 53 111 2.86e-12 62.0
MsG0680033884.01.T01 MTR_1g074250 50.820 61 28 1 26 84 16 76 3.16e-12 61.6
MsG0680033884.01.T01 MTR_7g085810 44.595 74 40 1 29 102 30 102 3.49e-12 63.5
MsG0680033884.01.T01 MTR_6g041970 41.860 86 37 1 29 114 18 90 3.68e-12 60.5
MsG0680033884.01.T01 MTR_5g075570 48.333 60 31 0 25 84 120 179 3.92e-12 63.9
MsG0680033884.01.T01 MTR_4g054860 44.706 85 41 3 5 88 112 191 4.18e-12 63.5
MsG0680033884.01.T01 MTR_8g099215 46.914 81 34 2 13 84 82 162 8.11e-12 63.2
MsG0680033884.01.T01 MTR_4g112490 47.458 59 31 0 29 87 53 111 8.63e-12 62.0
MsG0680033884.01.T01 MTR_8g006840 52.632 57 26 1 29 84 125 181 9.99e-12 61.6
MsG0680033884.01.T01 MTR_6g029180 47.222 72 37 1 17 88 22 92 1.05e-11 62.8
MsG0680033884.01.T01 MTR_8g085960 43.421 76 40 2 29 102 25 99 1.42e-11 61.6
MsG0680033884.01.T01 MTR_4g100380 56.140 57 24 1 29 84 145 201 1.63e-11 62.0
MsG0680033884.01.T01 MTR_5g032820 55.357 56 25 0 29 84 46 101 1.82e-11 62.4
MsG0680033884.01.T01 MTR_2g015040 52.632 57 26 1 29 84 63 119 1.98e-11 60.1
MsG0680033884.01.T01 MTR_8g006815 52.632 57 26 1 29 84 96 152 2.00e-11 60.8
MsG0680033884.01.T01 MTR_7g081805 52.632 57 26 1 29 84 61 117 2.22e-11 60.8
MsG0680033884.01.T01 MTR_7g081815 52.632 57 26 1 29 84 61 117 2.45e-11 60.5
MsG0680033884.01.T01 MTR_8g032610 52.727 55 26 0 31 85 29 83 2.50e-11 61.6
MsG0680033884.01.T01 MTR_7g011630 43.529 85 39 2 13 97 29 104 2.97e-11 62.0
MsG0680033884.01.T01 MTR_3g095190 54.795 73 32 1 29 100 170 242 3.41e-11 61.6
MsG0680033884.01.T01 MTR_7g096750 54.386 57 25 1 29 84 20 76 4.14e-11 58.5
MsG0680033884.01.T01 MTR_1g070020 39.130 92 53 2 19 109 60 149 5.45e-11 59.7
MsG0680033884.01.T01 MTR_6g012970 51.786 56 27 0 29 84 38 93 6.89e-11 60.8
MsG0680033884.01.T01 MTR_7g084370 47.887 71 34 1 29 99 42 109 8.30e-11 60.1
MsG0680033884.01.T01 MTR_1g069960 52.857 70 31 2 29 97 27 95 9.05e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033884.01.T01 AT4G25470 56.345 197 70 5 6 194 28 216 7.82e-69 209
MsG0680033884.01.T01 AT4G25480 56.853 197 67 4 7 194 29 216 2.38e-64 197
MsG0680033884.01.T01 AT5G51990 54.040 198 76 5 6 194 31 222 7.69e-63 194
MsG0680033884.01.T01 AT4G25490 56.566 198 66 5 7 194 26 213 1.36e-61 191
MsG0680033884.01.T01 AT1G12610 49.000 200 90 3 7 194 8 207 2.96e-55 174
MsG0680033884.01.T01 AT1G63030 49.189 185 76 3 12 194 13 181 2.44e-54 171
MsG0680033884.01.T01 AT1G63030 49.189 185 76 3 12 194 13 181 2.44e-54 171
MsG0680033884.01.T01 AT5G25810 60.638 94 36 1 18 110 24 117 5.89e-34 120
MsG0680033884.01.T01 AT5G11590 46.324 136 73 0 25 160 47 182 1.32e-32 117
MsG0680033884.01.T01 AT2G44940 60.215 93 37 0 18 110 89 181 1.28e-31 116
MsG0680033884.01.T01 AT4G32800 53.271 107 44 1 16 116 6 112 1.78e-31 114
MsG0680033884.01.T01 AT2G35700 63.750 80 29 0 24 103 40 119 6.82e-31 112
MsG0680033884.01.T01 AT2G36450 40.437 183 102 4 17 194 3 183 2.01e-30 110
MsG0680033884.01.T01 AT4G16750 52.427 103 44 1 6 103 12 114 2.33e-29 107
MsG0680033884.01.T01 AT3G16280 63.291 79 29 0 25 103 57 135 3.01e-29 108
MsG0680033884.01.T01 AT3G16280 63.291 79 29 0 25 103 75 153 4.59e-29 108
MsG0680033884.01.T01 AT1G01250 61.250 80 31 0 24 103 40 119 6.08e-29 106
MsG0680033884.01.T01 AT5G52020 44.000 175 89 5 25 194 61 231 4.72e-28 105
MsG0680033884.01.T01 AT3G60490 59.756 82 32 1 23 103 64 145 9.08e-27 102
MsG0680033884.01.T01 AT2G25820 63.158 76 28 0 28 103 25 100 1.52e-26 101
MsG0680033884.01.T01 AT1G71450 48.113 106 55 0 28 133 23 128 3.91e-24 94.0
MsG0680033884.01.T01 AT1G33760 56.180 89 39 0 29 117 20 108 5.51e-21 85.9
MsG0680033884.01.T01 AT1G21910 47.000 100 32 2 29 114 50 142 9.57e-21 86.3
MsG0680033884.01.T01 AT2G47520 29.375 160 93 4 5 161 23 165 2.46e-20 84.0
MsG0680033884.01.T01 AT1G77200 61.039 77 30 0 27 103 41 117 7.04e-20 84.3
MsG0680033884.01.T01 AT1G12630 40.782 179 96 3 25 194 15 192 7.18e-19 80.5
MsG0680033884.01.T01 AT1G46768 58.730 63 25 1 24 86 27 88 1.49e-18 78.6
MsG0680033884.01.T01 AT1G46768 58.730 63 25 1 24 86 27 88 1.57e-18 78.6
MsG0680033884.01.T01 AT1G46768 58.730 63 25 1 24 86 27 88 1.57e-18 78.6
MsG0680033884.01.T01 AT4G06746 43.333 90 46 1 1 90 13 97 2.19e-18 78.2
MsG0680033884.01.T01 AT4G13620 61.017 59 23 0 28 86 231 289 2.37e-18 82.0
MsG0680033884.01.T01 AT3G16770 55.556 72 28 1 15 86 69 136 4.75e-18 79.7
MsG0680033884.01.T01 AT2G22200 53.333 75 33 1 28 100 70 144 5.82e-18 79.7
MsG0680033884.01.T01 AT4G39780 48.780 82 40 1 3 84 69 148 9.40e-18 79.3
MsG0680033884.01.T01 AT1G22190 54.795 73 31 1 14 86 70 140 9.73e-18 79.0
MsG0680033884.01.T01 AT3G11020 52.564 78 37 0 23 100 72 149 1.21e-17 79.7
MsG0680033884.01.T01 AT5G21960 48.810 84 43 0 27 110 5 88 2.52e-17 77.0
MsG0680033884.01.T01 AT5G65130 53.247 77 34 1 14 88 94 170 2.99e-17 77.8
MsG0680033884.01.T01 AT5G65130 53.247 77 34 1 14 88 96 172 3.00e-17 77.8
MsG0680033884.01.T01 AT1G78080 47.674 86 42 2 1 86 127 209 7.06e-17 77.4
MsG0680033884.01.T01 AT2G33710 47.561 82 38 1 24 100 65 146 7.51e-17 75.9
MsG0680033884.01.T01 AT2G33710 47.561 82 38 1 24 100 65 146 9.80e-17 75.9
MsG0680033884.01.T01 AT4G36900 56.667 60 26 0 25 84 26 85 1.02e-16 75.1
MsG0680033884.01.T01 AT3G50260 35.537 121 66 2 22 142 14 122 1.04e-16 73.9
MsG0680033884.01.T01 AT1G74930 45.349 86 47 0 29 114 21 106 1.08e-16 75.1
MsG0680033884.01.T01 AT2G23340 39.423 104 58 1 29 132 28 126 2.80e-16 73.6
MsG0680033884.01.T01 AT5G67190 57.143 56 24 0 29 84 21 76 3.58e-16 73.2
MsG0680033884.01.T01 AT5G05410 53.521 71 33 0 29 99 79 149 4.09e-16 75.1
MsG0680033884.01.T01 AT5G05410 52.778 72 34 0 29 100 79 150 4.75e-16 75.1
MsG0680033884.01.T01 AT1G19210 43.333 90 51 0 29 118 12 101 5.90e-16 72.8
MsG0680033884.01.T01 AT1G36060 61.404 57 22 0 28 84 142 198 1.20e-15 73.9
MsG0680033884.01.T01 AT4G28140 55.932 59 26 0 28 86 142 200 1.40e-15 73.6
MsG0680033884.01.T01 AT5G07580 50.633 79 36 2 23 100 106 182 1.51e-15 72.0
MsG0680033884.01.T01 AT2G20880 59.649 57 23 0 28 84 186 242 1.71e-15 73.6
MsG0680033884.01.T01 AT3G15210 50.000 82 32 2 29 101 25 106 1.76e-15 72.4
MsG0680033884.01.T01 AT5G44210 52.113 71 27 1 29 99 33 96 2.76e-15 71.2
MsG0680033884.01.T01 AT5G13330 54.688 64 27 1 25 88 37 98 2.81e-15 71.6
MsG0680033884.01.T01 AT1G75490 51.429 70 34 0 28 97 41 110 3.43e-15 71.2
MsG0680033884.01.T01 AT3G57600 51.389 72 35 0 13 84 12 83 3.83e-15 72.0
MsG0680033884.01.T01 AT5G61600 60.656 61 21 2 25 84 86 144 5.43e-15 71.2
MsG0680033884.01.T01 AT5G61890 54.688 64 27 1 25 88 88 149 5.60e-15 71.2
MsG0680033884.01.T01 AT5G64750 41.304 92 48 2 39 130 195 280 7.63e-15 72.0
MsG0680033884.01.T01 AT1G03800 51.471 68 30 1 17 84 44 108 1.12e-14 70.5
MsG0680033884.01.T01 AT5G51190 57.143 63 24 2 23 84 68 128 1.44e-14 69.7
MsG0680033884.01.T01 AT1G72360 44.737 76 42 0 9 84 54 129 1.88e-14 70.1
MsG0680033884.01.T01 AT1G15360 58.929 56 23 0 29 84 7 62 1.92e-14 68.9
MsG0680033884.01.T01 AT1G15360 58.929 56 23 0 29 84 7 62 1.92e-14 68.9
MsG0680033884.01.T01 AT1G72360 49.206 63 32 0 22 84 18 80 2.10e-14 68.9
MsG0680033884.01.T01 AT4G11140 41.935 93 41 2 29 114 87 173 2.19e-14 70.1
MsG0680033884.01.T01 AT5G47230 52.778 72 33 1 14 84 141 212 2.19e-14 70.5
MsG0680033884.01.T01 AT5G43410 55.000 60 26 1 26 84 12 71 2.63e-14 67.0
MsG0680033884.01.T01 AT4G27950 56.140 57 25 0 29 85 118 174 3.23e-14 70.1
MsG0680033884.01.T01 AT3G61630 46.835 79 36 1 29 107 105 177 4.60e-14 69.7
MsG0680033884.01.T01 AT1G71520 35.461 141 69 6 23 157 8 132 5.29e-14 66.6
MsG0680033884.01.T01 AT1G72360 49.206 63 32 0 22 84 69 131 5.75e-14 68.6
MsG0680033884.01.T01 AT5G25190 52.941 68 32 0 29 96 8 75 5.75e-14 67.4
MsG0680033884.01.T01 AT1G22810 39.785 93 41 2 29 113 14 99 6.00e-14 66.6
MsG0680033884.01.T01 AT3G23230 51.613 62 29 1 29 89 20 81 9.08e-14 65.9
MsG0680033884.01.T01 AT5G25390 55.357 56 25 0 29 84 7 62 9.14e-14 67.0
MsG0680033884.01.T01 AT1G43160 38.931 131 67 4 29 158 61 179 9.72e-14 67.0
MsG0680033884.01.T01 AT4G31060 41.463 82 44 1 7 84 1 82 1.10e-13 66.6
MsG0680033884.01.T01 AT2G40340 46.479 71 38 0 29 99 14 84 2.57e-13 67.0
MsG0680033884.01.T01 AT2G40340 46.479 71 38 0 29 99 14 84 2.57e-13 67.0
MsG0680033884.01.T01 AT2G40340 46.479 71 38 0 29 99 14 84 2.57e-13 67.0
MsG0680033884.01.T01 AT3G20310 53.226 62 29 0 23 84 21 82 2.80e-13 66.6
MsG0680033884.01.T01 AT2G40340 33.858 127 77 2 29 155 72 191 3.35e-13 67.0
MsG0680033884.01.T01 AT5G53290 54.386 57 26 0 29 85 125 181 4.39e-13 67.0
MsG0680033884.01.T01 AT5G18450 46.250 80 39 1 5 84 14 89 5.12e-13 66.6
MsG0680033884.01.T01 AT1G28370 55.357 56 25 0 29 84 20 75 5.23e-13 64.3
MsG0680033884.01.T01 AT1G28360 58.929 56 23 0 29 84 12 67 5.37e-13 65.1
MsG0680033884.01.T01 AT2G40340 46.479 71 38 0 29 99 72 142 5.81e-13 66.6
MsG0680033884.01.T01 AT2G40340 46.479 71 38 0 29 99 79 149 5.91e-13 66.6
MsG0680033884.01.T01 AT4G17490 48.780 82 37 3 6 84 114 193 6.30e-13 66.2
MsG0680033884.01.T01 AT1G28370 55.357 56 25 0 29 84 58 113 7.24e-13 64.7
MsG0680033884.01.T01 AT4G23750 52.632 57 27 0 29 85 122 178 1.03e-12 65.9
MsG0680033884.01.T01 AT4G23750 52.632 57 27 0 29 85 122 178 1.03e-12 65.9
MsG0680033884.01.T01 AT1G50640 57.143 56 24 0 29 84 28 83 1.47e-12 64.3
MsG0680033884.01.T01 AT5G47220 56.140 57 24 1 29 84 117 173 1.85e-12 64.3
MsG0680033884.01.T01 AT2G46310 51.786 56 27 0 29 84 99 154 2.12e-12 64.7
MsG0680033884.01.T01 AT5G19790 53.448 58 27 0 29 86 22 79 2.98e-12 63.9
MsG0680033884.01.T01 AT5G61590 52.500 80 35 2 19 97 99 176 3.61e-12 62.8
MsG0680033884.01.T01 AT1G12890 44.872 78 40 1 7 84 2 76 4.14e-12 63.2
MsG0680033884.01.T01 AT1G77640 45.556 90 43 1 29 112 43 132 1.05e-11 62.4
MsG0680033884.01.T01 AT4G17500 56.140 57 24 1 29 84 148 204 1.43e-11 62.0
MsG0680033884.01.T01 AT3G23240 50.000 58 28 1 29 85 82 139 1.46e-11 61.6
MsG0680033884.01.T01 AT1G24590 50.769 65 29 1 29 93 58 119 2.09e-11 62.0
MsG0680033884.01.T01 AT1G12980 55.357 56 25 0 29 84 57 112 2.55e-11 62.0
MsG0680033884.01.T01 AT2G44840 54.386 57 25 1 29 84 92 148 2.87e-11 60.8
MsG0680033884.01.T01 AT5G25390 51.786 56 24 1 29 84 7 59 3.64e-11 59.7
MsG0680033884.01.T01 AT5G07310 46.835 79 40 1 6 84 71 147 5.64e-11 60.5
MsG0680033884.01.T01 AT2G40350 48.214 56 29 0 29 84 74 129 6.06e-11 58.9
MsG0680033884.01.T01 AT2G40350 48.214 56 29 0 29 84 67 122 7.59e-11 58.5

Find 58 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAATATATACATATGTTT+AGG 0.215595 6:+75631308 None:intergenic
GGAAGAGGAACTTAGATAAA+TGG 0.256718 6:+75631419 MsG0680033884.01.T01:CDS
ACGTTGCAGCGATGGCATTA+AGG 0.265866 6:+75631527 MsG0680033884.01.T01:CDS
TTTCTCCCTGCTGGTTTCTT+CGG 0.268369 6:-75631355 None:intergenic
CTAATATATACATATGTTTA+GGG 0.296079 6:+75631309 None:intergenic
TTCTCCCTGCTGGTTTCTTC+GGG 0.296529 6:-75631354 None:intergenic
AGCAGGGAGAAAGAAATTTA+AGG 0.304894 6:+75631366 MsG0680033884.01.T01:CDS
CAAATCCTAGTCTTCTTGTT+TGG 0.307227 6:-75631460 None:intergenic
TTAAATTTCTTTCTCCCTGC+TGG 0.331988 6:-75631364 None:intergenic
GCCAGAGTTGTGGAGGAATA+TGG 0.338237 6:+75631792 MsG0680033884.01.T01:CDS
CGTTGCAGCGATGGCATTAA+GGG 0.377499 6:+75631528 MsG0680033884.01.T01:CDS
TCGCTGCAACGTCGTGTGCT+CGG 0.389912 6:-75631516 None:intergenic
CGCTGCAACGTCGTGTGCTC+GGG 0.398592 6:-75631515 None:intergenic
AATGTCCCCTACACATAGTT+TGG 0.427502 6:+75631819 MsG0680033884.01.T01:CDS
CAAACAAGAAGACTAGGATT+TGG 0.429238 6:+75631461 MsG0680033884.01.T01:CDS
GAAGAGGAACTTAGATAAAT+GGG 0.434368 6:+75631420 MsG0680033884.01.T01:CDS
TGTATAGAGGTGTGAGGAAG+AGG 0.474025 6:+75631404 MsG0680033884.01.T01:CDS
CTGAAACAAAAGACATTCAA+AGG 0.491926 6:+75631611 MsG0680033884.01.T01:CDS
ACTCGCCACCCGGTGTATAG+AGG 0.496516 6:+75631391 MsG0680033884.01.T01:CDS
GTAGTCGTTAAAGTCTTGTC+TGG 0.505167 6:-75631664 None:intergenic
GCCATATTCCTCCACAACTC+TGG 0.506491 6:-75631793 None:intergenic
CATGCACCAAACTATGTGTA+GGG 0.511168 6:-75631825 None:intergenic
CGGGCAGCCATCTCAGCCGT+TGG 0.512810 6:-75631496 None:intergenic
GGCAGCTGCAGAAGCCGCTG+AGG 0.513356 6:+75631633 MsG0680033884.01.T01:CDS
TGTGGAAGTCGAAGAAGAAG+AGG 0.518171 6:+75631756 MsG0680033884.01.T01:CDS
AGCACACGACGTTGCAGCGA+TGG 0.528674 6:+75631519 MsG0680033884.01.T01:CDS
TACTGACATTGACACGGTTG+TGG 0.536605 6:+75631684 MsG0680033884.01.T01:CDS
TGTACAATTTCAAGAGGAAG+AGG 0.538906 6:+75631864 MsG0680033884.01.T01:CDS
TGTCGTTGCAGTCGAAGAAG+AGG 0.540894 6:+75631711 MsG0680033884.01.T01:CDS
AGTTGCCCGAAGAAACCAGC+AGG 0.545231 6:+75631349 MsG0680033884.01.T01:CDS
CGAGTCTGCAAAATTGAGAC+AGG 0.547018 6:-75631560 None:intergenic
AAGAAGACTAGGATTTGGCT+AGG 0.552639 6:+75631466 MsG0680033884.01.T01:CDS
TAAATGGGTGTGTGAAATGA+GGG 0.554317 6:+75631435 MsG0680033884.01.T01:CDS
TGAAACAAAAGACATTCAAA+GGG 0.555993 6:+75631612 MsG0680033884.01.T01:CDS
GTTTCAGAAGAGGCAGGAGT+AGG 0.561690 6:-75631595 None:intergenic
GTTTAGGGAGGGGCAATTAG+CGG 0.561963 6:+75631324 MsG0680033884.01.T01:CDS
TATATACATATGTTTAGGGA+GGG 0.562832 6:+75631313 None:intergenic
ATTTAAGGAGACTCGCCACC+CGG 0.564242 6:+75631381 MsG0680033884.01.T01:CDS
ATATACATATGTTTAGGGAG+GGG 0.565127 6:+75631314 None:intergenic
TCATGCACCAAACTATGTGT+AGG 0.576797 6:-75631826 None:intergenic
TTCCTCACACCTCTATACAC+CGG 0.578151 6:-75631400 None:intergenic
TCCTCACACCTCTATACACC+GGG 0.580421 6:-75631399 None:intergenic
GGGAACCAAACAAGAAGACT+AGG 0.587015 6:+75631455 MsG0680033884.01.T01:CDS
ATAAATGGGTGTGTGAAATG+AGG 0.599450 6:+75631434 MsG0680033884.01.T01:CDS
AAGAGGAAGAGGTATCGCTA+TGG 0.611105 6:+75631875 MsG0680033884.01.T01:CDS
AACGACTACTGACATTGACA+CGG 0.611733 6:+75631678 MsG0680033884.01.T01:CDS
TGTTGAATATGCCAGAGTTG+TGG 0.615027 6:+75631782 MsG0680033884.01.T01:CDS
ATATATACATATGTTTAGGG+AGG 0.634372 6:+75631312 None:intergenic
GTTGCAGCGATGGCATTAAG+GGG 0.638430 6:+75631529 MsG0680033884.01.T01:CDS
AGAAGACTAGGATTTGGCTA+GGG 0.661545 6:+75631467 MsG0680033884.01.T01:CDS
TTCTTCGACTGCAACGACAA+CGG 0.675808 6:-75631707 None:intergenic
GTCTGGTCTGAAAGCCTCAG+CGG 0.676858 6:-75631647 None:intergenic
ATGCACCAAACTATGTGTAG+GGG 0.684106 6:-75631824 None:intergenic
TGAATATGCCAGAGTTGTGG+AGG 0.686416 6:+75631785 MsG0680033884.01.T01:CDS
CAAAATTGAGACAGGCGTAG+CGG 0.688544 6:-75631552 None:intergenic
ACCCGGTGTATAGAGGTGTG+AGG 0.705873 6:+75631398 MsG0680033884.01.T01:CDS
TCACACCTCTATACACCGGG+TGG 0.726886 6:-75631396 None:intergenic
GTTGCCCGAAGAAACCAGCA+GGG 0.737979 6:+75631350 MsG0680033884.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TGAAACAAAAGACATTCAAA+GGG + Chr6:75631612-75631631 MsG0680033884.01.T01:CDS 25.0%
!! TTTTGATGTACAATTTCAAG+AGG + Chr6:75631858-75631877 MsG0680033884.01.T01:CDS 25.0%
CTGAAACAAAAGACATTCAA+AGG + Chr6:75631611-75631630 MsG0680033884.01.T01:CDS 30.0%
GAAGAGGAACTTAGATAAAT+GGG + Chr6:75631420-75631439 MsG0680033884.01.T01:CDS 30.0%
!! AATGTCTTTTGTTTCAGAAG+AGG - Chr6:75631608-75631627 None:intergenic 30.0%
AGCAGGGAGAAAGAAATTTA+AGG + Chr6:75631366-75631385 MsG0680033884.01.T01:CDS 35.0%
ATAAATGGGTGTGTGAAATG+AGG + Chr6:75631434-75631453 MsG0680033884.01.T01:CDS 35.0%
CAAACAAGAAGACTAGGATT+TGG + Chr6:75631461-75631480 MsG0680033884.01.T01:CDS 35.0%
GGAAGAGGAACTTAGATAAA+TGG + Chr6:75631419-75631438 MsG0680033884.01.T01:CDS 35.0%
TAAATGGGTGTGTGAAATGA+GGG + Chr6:75631435-75631454 MsG0680033884.01.T01:CDS 35.0%
TGTACAATTTCAAGAGGAAG+AGG + Chr6:75631864-75631883 MsG0680033884.01.T01:CDS 35.0%
TTAAATTTCTTTCTCCCTGC+TGG - Chr6:75631367-75631386 None:intergenic 35.0%
! CAAATCCTAGTCTTCTTGTT+TGG - Chr6:75631463-75631482 None:intergenic 35.0%
!! AGTGCTGAATATGTTTTGTG+TGG + Chr6:75631738-75631757 MsG0680033884.01.T01:CDS 35.0%
AACGACTACTGACATTGACA+CGG + Chr6:75631678-75631697 MsG0680033884.01.T01:CDS 40.0%
AAGAAGACTAGGATTTGGCT+AGG + Chr6:75631466-75631485 MsG0680033884.01.T01:CDS 40.0%
AATGTCCCCTACACATAGTT+TGG + Chr6:75631819-75631838 MsG0680033884.01.T01:CDS 40.0%
AGAAGACTAGGATTTGGCTA+GGG + Chr6:75631467-75631486 MsG0680033884.01.T01:CDS 40.0%
ATGCACCAAACTATGTGTAG+GGG - Chr6:75631827-75631846 None:intergenic 40.0%
CATGCACCAAACTATGTGTA+GGG - Chr6:75631828-75631847 None:intergenic 40.0%
TCATGCACCAAACTATGTGT+AGG - Chr6:75631829-75631848 None:intergenic 40.0%
TGTTGAATATGCCAGAGTTG+TGG + Chr6:75631782-75631801 MsG0680033884.01.T01:CDS 40.0%
! CTGTCTCAATTTTGCAGACT+CGG + Chr6:75631561-75631580 MsG0680033884.01.T01:CDS 40.0%
! GTAGTCGTTAAAGTCTTGTC+TGG - Chr6:75631667-75631686 None:intergenic 40.0%
!! TCTTTTGTTTCAGAAGAGGC+AGG - Chr6:75631604-75631623 None:intergenic 40.0%
CAAAATTGAGACAGGCGTAG+CGG - Chr6:75631555-75631574 None:intergenic 45.0%
CGAGTCTGCAAAATTGAGAC+AGG - Chr6:75631563-75631582 None:intergenic 45.0%
GGGAACCAAACAAGAAGACT+AGG + Chr6:75631455-75631474 MsG0680033884.01.T01:CDS 45.0%
TACTGACATTGACACGGTTG+TGG + Chr6:75631684-75631703 MsG0680033884.01.T01:CDS 45.0%
TGAATATGCCAGAGTTGTGG+AGG + Chr6:75631785-75631804 MsG0680033884.01.T01:CDS 45.0%
TGTGGAAGTCGAAGAAGAAG+AGG + Chr6:75631756-75631775 MsG0680033884.01.T01:CDS 45.0%
TTCCTCACACCTCTATACAC+CGG - Chr6:75631403-75631422 None:intergenic 45.0%
TTCTTCGACTGCAACGACAA+CGG - Chr6:75631710-75631729 None:intergenic 45.0%
! TGTATAGAGGTGTGAGGAAG+AGG + Chr6:75631404-75631423 MsG0680033884.01.T01:CDS 45.0%
! TTGGCTAGGGACTTTTCCAA+CGG + Chr6:75631480-75631499 MsG0680033884.01.T01:CDS 45.0%
!! AAGAGGAAGAGGTATCGCTA+TGG + Chr6:75631875-75631894 MsG0680033884.01.T01:CDS 45.0%
!! TTTCTCCCTGCTGGTTTCTT+CGG - Chr6:75631358-75631377 None:intergenic 45.0%
!!! TCAATTTTGCAGACTCGGTG+TGG + Chr6:75631566-75631585 MsG0680033884.01.T01:CDS 45.0%
ACGTTGCAGCGATGGCATTA+AGG + Chr6:75631527-75631546 MsG0680033884.01.T01:CDS 50.0%
ATTTAAGGAGACTCGCCACC+CGG + Chr6:75631381-75631400 MsG0680033884.01.T01:CDS 50.0%
CGTTGCAGCGATGGCATTAA+GGG + Chr6:75631528-75631547 MsG0680033884.01.T01:CDS 50.0%
GCCAGAGTTGTGGAGGAATA+TGG + Chr6:75631792-75631811 MsG0680033884.01.T01:CDS 50.0%
GCCATATTCCTCCACAACTC+TGG - Chr6:75631796-75631815 None:intergenic 50.0%
GTTGCAGCGATGGCATTAAG+GGG + Chr6:75631529-75631548 MsG0680033884.01.T01:CDS 50.0%
GTTTAGGGAGGGGCAATTAG+CGG + Chr6:75631324-75631343 MsG0680033884.01.T01:CDS 50.0%
GTTTCAGAAGAGGCAGGAGT+AGG - Chr6:75631598-75631617 None:intergenic 50.0%
TCCTCACACCTCTATACACC+GGG - Chr6:75631402-75631421 None:intergenic 50.0%
TGTCGTTGCAGTCGAAGAAG+AGG + Chr6:75631711-75631730 MsG0680033884.01.T01:CDS 50.0%
! GACTTTTCCAACGGCTGAGA+TGG + Chr6:75631489-75631508 MsG0680033884.01.T01:CDS 50.0%
!! TTCTCCCTGCTGGTTTCTTC+GGG - Chr6:75631357-75631376 None:intergenic 50.0%
!!! ATTTTGCAGACTCGGTGTGG+AGG + Chr6:75631569-75631588 MsG0680033884.01.T01:CDS 50.0%
AGTTGCCCGAAGAAACCAGC+AGG + Chr6:75631349-75631368 MsG0680033884.01.T01:CDS 55.0%
GTCTGGTCTGAAAGCCTCAG+CGG - Chr6:75631650-75631669 None:intergenic 55.0%
GTTGCCCGAAGAAACCAGCA+GGG + Chr6:75631350-75631369 MsG0680033884.01.T01:CDS 55.0%
TCACACCTCTATACACCGGG+TGG - Chr6:75631399-75631418 None:intergenic 55.0%
! ACCCGGTGTATAGAGGTGTG+AGG + Chr6:75631398-75631417 MsG0680033884.01.T01:CDS 55.0%
ACTCGCCACCCGGTGTATAG+AGG + Chr6:75631391-75631410 MsG0680033884.01.T01:CDS 60.0%
AGCACACGACGTTGCAGCGA+TGG + Chr6:75631519-75631538 MsG0680033884.01.T01:CDS 60.0%
TCGCTGCAACGTCGTGTGCT+CGG - Chr6:75631519-75631538 None:intergenic 60.0%
CGCTGCAACGTCGTGTGCTC+GGG - Chr6:75631518-75631537 None:intergenic 65.0%
CGGGCAGCCATCTCAGCCGT+TGG - Chr6:75631499-75631518 None:intergenic 70.0%
GGCAGCTGCAGAAGCCGCTG+AGG + Chr6:75631633-75631652 MsG0680033884.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 75631322 75631906 75631322 ID=MsG0680033884.01;Name=MsG0680033884.01
Chr6 mRNA 75631322 75631906 75631322 ID=MsG0680033884.01.T01;Parent=MsG0680033884.01;Name=MsG0680033884.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|194
Chr6 exon 75631322 75631906 75631322 ID=MsG0680033884.01.T01:exon:15552;Parent=MsG0680033884.01.T01
Chr6 CDS 75631322 75631906 75631322 ID=MsG0680033884.01.T01:cds;Parent=MsG0680033884.01.T01
Gene Sequence

>MsG0680033884.01.T01

ATGTTTAGGGAGGGGCAATTAGCGGCAAGTTGCCCGAAGAAACCAGCAGGGAGAAAGAAATTTAAGGAGACTCGCCACCCGGTGTATAGAGGTGTGAGGAAGAGGAACTTAGATAAATGGGTGTGTGAAATGAGGGAACCAAACAAGAAGACTAGGATTTGGCTAGGGACTTTTCCAACGGCTGAGATGGCTGCCCGAGCACACGACGTTGCAGCGATGGCATTAAGGGGCCGCTACGCCTGTCTCAATTTTGCAGACTCGGTGTGGAGGCTTCCTACTCCTGCCTCTTCTGAAACAAAAGACATTCAAAGGGCAGCTGCAGAAGCCGCTGAGGCTTTCAGACCAGACAAGACTTTAACGACTACTGACATTGACACGGTTGTGGCCGTTGTCGTTGCAGTCGAAGAAGAGGAAGAAGTGCTGAATATGTTTTGTGTGGAAGTCGAAGAAGAAGAGGAAGTGTTGAATATGCCAGAGTTGTGGAGGAATATGGCACTAATGTCCCCTACACATAGTTTGGTGCATGAGTATGAAGATTTTGATGTACAATTTCAAGAGGAAGAGGTATCGCTATGGAACTTCTAA

Protein sequence

>MsG0680033884.01.T01

MFREGQLAASCPKKPAGRKKFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSVWRLPTPASSETKDIQRAAAEAAEAFRPDKTLTTTDIDTVVAVVVAVEEEEEVLNMFCVEVEEEEEVLNMPELWRNMALMSPTHSLVHEYEDFDVQFQEEEVSLWNF*