AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680032416.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032416.01.T01 MTR_6g042030 97.183 71 2 0 10 80 110 180 4.00e-43 141
MsG0680032416.01.T01 MTR_2g078540 52.055 73 32 1 10 79 111 183 3.15e-18 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032416.01.T01 AT3G15110 51.351 74 32 1 11 80 118 191 5.94e-17 73.6

Find 18 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATATTTGAGATAAGTTTA+TGG 0.274138 6:+40689008 None:intergenic
GAATAGCACAAAAGGACTTA+TGG 0.287634 6:-40690095 MsG0680032416.01.T01:CDS
AGAAATTATCTGAAATTGTT+TGG 0.312877 6:+40689945 None:intergenic
ACCTTATGGTGATTGTTATC+TGG 0.328009 6:+40689036 None:intergenic
AACAATTTCAGATAATTTCT+CGG 0.364342 6:-40689942 MsG0680032416.01.T01:CDS
GCTCCTAACAATGCTTTATC+TGG 0.378868 6:+40690037 None:intergenic
TCACCAGATAAAGCATTGTT+AGG 0.382378 6:-40690040 MsG0680032416.01.T01:CDS
AATAGCACAAAAGGACTTAT+GGG 0.391794 6:-40690094 MsG0680032416.01.T01:CDS
AGTTTATGGAAGGTACCTTA+TGG 0.414071 6:+40689022 None:intergenic
AGCATTGTTAGGAGCAGTTA+TGG 0.422251 6:-40690029 MsG0680032416.01.T01:CDS
CGCCTAACCACGACAATGAA+TGG 0.459228 6:-40693162 None:intergenic
TCATCATTGAATAGCACAAA+AGG 0.490794 6:-40690103 MsG0680032416.01.T01:CDS
TGGCTATAAGAGTTTATTGA+AGG 0.499070 6:-40693142 MsG0680032416.01.T01:intron
TTGTTAGGAGCAGTTATGGC+TGG 0.532963 6:-40690025 MsG0680032416.01.T01:CDS
GCCAGATAACAATCACCATA+AGG 0.551485 6:-40689037 MsG0680032416.01.T01:CDS
AACAATGCTTTATCTGGTGA+AGG 0.551642 6:+40690043 None:intergenic
ATTTGAGATAAGTTTATGGA+AGG 0.570664 6:+40689012 None:intergenic
AATGCTTTATCTGGTGAAGG+TGG 0.571857 6:+40690046 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATAATTTTTATTTTAA+TGG - Chr6:40690297-40690316 MsG0680032416.01.T01:intron 0.0%
!! ACATTTATATAATAAATTTG+GGG + Chr6:40689985-40690004 None:intergenic 10.0%
!!! AATTTTTATTTTAATGGTTA+TGG - Chr6:40690303-40690322 MsG0680032416.01.T01:intron 10.0%
!!! ATGTTTTGAATAAATTTTTA+AGG - Chr6:40691401-40691420 MsG0680032416.01.T01:intron 10.0%
!!! GAAAAAAATTGAATAATTTT+CGG + Chr6:40689297-40689316 None:intergenic 10.0%
!!! GAAAATTATTCAATTTTTTT+CGG - Chr6:40689296-40689315 MsG0680032416.01.T01:intron 10.0%
!!! TAAATTTTTTCTCTTTTTAT+TGG - Chr6:40691162-40691181 MsG0680032416.01.T01:intron 10.0%
!!! TATTTTAAAAGTAATAACAA+CGG + Chr6:40692926-40692945 None:intergenic 10.0%
!!! TGTTTTGAATAAATTTTTAA+GGG - Chr6:40691402-40691421 MsG0680032416.01.T01:intron 10.0%
!!! TTTAATTTTGTAAATTTTTG+TGG - Chr6:40690451-40690470 MsG0680032416.01.T01:intron 10.0%
!! AATGGTAAATTAATTGTAAA+AGG + Chr6:40689208-40689227 None:intergenic 15.0%
!! AGAATGTTAAAATTAAGAAT+GGG + Chr6:40689601-40689620 None:intergenic 15.0%
!! ATAATATTCTTTCATCTTAA+TGG - Chr6:40693025-40693044 MsG0680032416.01.T01:intron 15.0%
!! ATGGTAAATTAATTGTAAAA+GGG + Chr6:40689207-40689226 None:intergenic 15.0%
!! ATTTGTGGAAATTATTATAA+TGG + Chr6:40690833-40690852 None:intergenic 15.0%
!! GAATATTTAAATATTTGTAG+GGG + Chr6:40689160-40689179 None:intergenic 15.0%
!! GGAATATTTAAATATTTGTA+GGG + Chr6:40689161-40689180 None:intergenic 15.0%
!! TGGAATATTTAAATATTTGT+AGG + Chr6:40689162-40689181 None:intergenic 15.0%
!! TTTACAATTAATTTACCATT+CGG - Chr6:40689208-40689227 MsG0680032416.01.T01:intron 15.0%
!!! AAAAAATAATGGAATGATAT+TGG - Chr6:40689458-40689477 MsG0680032416.01.T01:intron 15.0%
!!! ATAAATGTTTTTTATTAGGT+TGG - Chr6:40689997-40690016 MsG0680032416.01.T01:CDS 15.0%
!!! ATTCTTAATTTTAACATTCT+GGG - Chr6:40689601-40689620 MsG0680032416.01.T01:intron 15.0%
!!! GTTTTGAATAAATTTTTAAG+GGG - Chr6:40691403-40691422 MsG0680032416.01.T01:intron 15.0%
!!! TAAATGTTTTTTATTAGGTT+GGG - Chr6:40689998-40690017 MsG0680032416.01.T01:CDS 15.0%
!!! TTTATTGGAAAATTTTATTG+AGG - Chr6:40691177-40691196 MsG0680032416.01.T01:intron 15.0%
!!! TTTTGAATAAATTTTTAAGG+GGG - Chr6:40691404-40691423 MsG0680032416.01.T01:intron 15.0%
!! AAAAATTGGAACCTTTATAT+CGG + Chr6:40689249-40689268 None:intergenic 20.0%
!! AACAATTTCAGATAATTTCT+CGG - Chr6:40692207-40692226 MsG0680032416.01.T01:intron 20.0%
!! CAGAATGTTAAAATTAAGAA+TGG + Chr6:40689602-40689621 None:intergenic 20.0%
!! CATAATATTCTTTGATGAAA+TGG - Chr6:40691982-40692001 MsG0680032416.01.T01:intron 20.0%
!! CTTACTAATCTAAATAAAGA+TGG - Chr6:40689567-40689586 MsG0680032416.01.T01:intron 20.0%
!! CTTTACCAAAAAAAGAAAAT+TGG - Chr6:40691727-40691746 MsG0680032416.01.T01:intron 20.0%
!! GAATATTGCTAGTAATATTT+AGG + Chr6:40691599-40691618 None:intergenic 20.0%
!! TAAAAGGGTTAATAACAAAA+GGG + Chr6:40689192-40689211 None:intergenic 20.0%
!! TAGTATGAGAATGTATTAAA+TGG - Chr6:40692567-40692586 MsG0680032416.01.T01:intron 20.0%
!! TGAGTATTCCAAAAAAAAAT+TGG + Chr6:40689263-40689282 None:intergenic 20.0%
!! TTATTCAAAGAATATGTATG+TGG + Chr6:40691904-40691923 None:intergenic 20.0%
!! TTCAAAATGATGAAAATATG+AGG - Chr6:40691555-40691574 MsG0680032416.01.T01:intron 20.0%
!! TTTCATCAAAGAATATTATG+TGG + Chr6:40691982-40692001 None:intergenic 20.0%
!!! AAATTATTATAATGGAGAAG+TGG + Chr6:40690825-40690844 None:intergenic 20.0%
!!! AAATTGAATAATTTTCGGAA+AGG + Chr6:40689292-40689311 None:intergenic 20.0%
!!! AATGTGTTTATTTTATCTCT+AGG - Chr6:40692372-40692391 MsG0680032416.01.T01:intron 20.0%
!!! AATTAATTTTGTACATCATC+AGG - Chr6:40691808-40691827 MsG0680032416.01.T01:intron 20.0%
!!! AATTTTGTAAATTTTTGTGG+AGG - Chr6:40690454-40690473 MsG0680032416.01.T01:intron 20.0%
!!! ACATATTTGAGATAAGTTTA+TGG + Chr6:40693144-40693163 None:intergenic 20.0%
!!! AGAAATTATCTGAAATTGTT+TGG + Chr6:40692207-40692226 None:intergenic 20.0%
!!! AGAGTATTCTGAATAATTTT+TGG + Chr6:40689341-40689360 None:intergenic 20.0%
!!! ATATGAGAGTGTAAAAATTA+GGG + Chr6:40690240-40690259 None:intergenic 20.0%
!!! ATGTGTTTATTTTATCTCTA+GGG - Chr6:40692373-40692392 MsG0680032416.01.T01:intron 20.0%
!!! ATTCTGAATAATTTTTGGAA+AGG + Chr6:40689336-40689355 None:intergenic 20.0%
!!! ATTGGTGATTTTAGAAATAT+AGG - Chr6:40692005-40692024 MsG0680032416.01.T01:intron 20.0%
!!! CAATTTTCTTTTTTTGGTAA+AGG + Chr6:40691729-40691748 None:intergenic 20.0%
!!! CATTCTTAATTTTAACATTC+TGG - Chr6:40689600-40689619 MsG0680032416.01.T01:intron 20.0%
!!! CATTGATTACTTTTAAGTTT+AGG - Chr6:40690644-40690663 MsG0680032416.01.T01:intron 20.0%
!!! GTAGTTTGTATCAAATATTA+GGG - Chr6:40689924-40689943 MsG0680032416.01.T01:intron 20.0%
!!! TAAAGGTTCCAATTTTTTTT+TGG - Chr6:40689252-40689271 MsG0680032416.01.T01:intron 20.0%
!!! TCTTATTTGGTAAATTTATG+TGG - Chr6:40691648-40691667 MsG0680032416.01.T01:intron 20.0%
!!! TTCTACCAATTTTCTTTTTT+TGG + Chr6:40691735-40691754 None:intergenic 20.0%
!!! TTCTACTTTTCATTTAACTA+CGG + Chr6:40690391-40690410 None:intergenic 20.0%
!!! TTCTCTTCTTTTTTTTACAA+TGG + Chr6:40690348-40690367 None:intergenic 20.0%
!!! TTTATTGTTTTGTTTTACCT+TGG + Chr6:40690601-40690620 None:intergenic 20.0%
! AAAAATTAGGGTGACAAAAT+AGG + Chr6:40690228-40690247 None:intergenic 25.0%
! AAAAGGGTTAATAACAAAAG+GGG + Chr6:40689191-40689210 None:intergenic 25.0%
! AAACACATGAAAAGATTAAG+AGG - Chr6:40689892-40689911 MsG0680032416.01.T01:intron 25.0%
! AAAGATTAAGAGGGTAAATT+TGG - Chr6:40689902-40689921 MsG0680032416.01.T01:intron 25.0%
! AACACATGAAAAGATTAAGA+GGG - Chr6:40689893-40689912 MsG0680032416.01.T01:intron 25.0%
! AACTTAAACAAACAAATTGC+TGG - Chr6:40689667-40689686 MsG0680032416.01.T01:intron 25.0%
! AATACATCAATACATGATCA+AGG + Chr6:40691700-40691719 None:intergenic 25.0%
! ATACATCAATACATGATCAA+GGG + Chr6:40691699-40691718 None:intergenic 25.0%
! ATGTTCCAAGCAAAAAATAA+TGG - Chr6:40689447-40689466 MsG0680032416.01.T01:intron 25.0%
! ATTAAAGATACAACAAGTGA+AGG + Chr6:40690700-40690719 None:intergenic 25.0%
! CATAAAATGGTGAAAATATG+TGG + Chr6:40691316-40691335 None:intergenic 25.0%
! CATGAAAGTTTAAAAATGCT+GGG + Chr6:40691676-40691695 None:intergenic 25.0%
! CATTGTAGTGCATTTATATT+CGG - Chr6:40692713-40692732 MsG0680032416.01.T01:intron 25.0%
! CTATCCTTAGTTGTATAAAT+AGG + Chr6:40692629-40692648 None:intergenic 25.0%
! GCAATATATGATATGATGAT+AGG + Chr6:40691462-40691481 None:intergenic 25.0%
! GTAAAAGGGTTAATAACAAA+AGG + Chr6:40689193-40689212 None:intergenic 25.0%
! GTTAGATTTAATTGTAGTTC+TGG - Chr6:40691289-40691308 MsG0680032416.01.T01:intron 25.0%
! TATTCTTTGATGAAATGGAT+TGG - Chr6:40691987-40692006 MsG0680032416.01.T01:intron 25.0%
! TCATCTATAGCATCAAAAAT+GGG + Chr6:40690954-40690973 None:intergenic 25.0%
! TCTCATATCGTTCTTAATTA+AGG - Chr6:40690252-40690271 MsG0680032416.01.T01:intron 25.0%
! TGATAGGTAAATATCAACAT+TGG + Chr6:40691446-40691465 None:intergenic 25.0%
! TGTATATTTCCGTAATAATG+TGG - Chr6:40689364-40689383 MsG0680032416.01.T01:intron 25.0%
! TTAAAGATACAACAAGTGAA+GGG + Chr6:40690699-40690718 None:intergenic 25.0%
! TTGTGAATGGAATGAAAAAT+CGG + Chr6:40690572-40690591 None:intergenic 25.0%
! TTTCTTGTGTTTATGATTGT+TGG + Chr6:40690525-40690544 None:intergenic 25.0%
!! ATCTATATCCTTTTCTCATT+TGG + Chr6:40690494-40690513 None:intergenic 25.0%
!! ATTTGAGATAAGTTTATGGA+AGG + Chr6:40693140-40693159 None:intergenic 25.0%
!! CACATATTTTCACCATTTTA+TGG - Chr6:40691314-40691333 MsG0680032416.01.T01:intron 25.0%
!! GAAAATTATGTGTTCTAGAT+TGG + Chr6:40692819-40692838 None:intergenic 25.0%
!! GATATGAGAGTGTAAAAATT+AGG + Chr6:40690241-40690260 None:intergenic 25.0%
!! GGTAGAAATTTTATTGAAAG+TGG - Chr6:40691748-40691767 MsG0680032416.01.T01:intron 25.0%
!! GGTAGTTTGTATCAAATATT+AGG - Chr6:40689923-40689942 MsG0680032416.01.T01:intron 25.0%
!! TATGGTAACCAATTTCTTTT+GGG - Chr6:40689498-40689517 MsG0680032416.01.T01:intron 25.0%
!!! ACATTAAAAGTGTCAACAAA+GGG + Chr6:40692339-40692358 None:intergenic 25.0%
!!! ATTTTAATGGTTATGGAACA+AGG - Chr6:40690310-40690329 MsG0680032416.01.T01:intron 25.0%
!!! CACTTTTAATGTCATTTCAT+TGG - Chr6:40692347-40692366 MsG0680032416.01.T01:intron 25.0%
!!! GTATTAGAATGAGTTTTGTT+AGG - Chr6:40691226-40691245 MsG0680032416.01.T01:intron 25.0%
!!! TCATTCCATTATTTTTTGCT+TGG + Chr6:40689455-40689474 None:intergenic 25.0%
!!! TTTTAGAAATATAGGTCTTC+TGG - Chr6:40692013-40692032 MsG0680032416.01.T01:intron 25.0%
AAAACACATGCAAAACGTTT+CGG + Chr6:40689715-40689734 None:intergenic 30.0%
AACAGTATGAGGATTAATTG+TGG + Chr6:40690856-40690875 None:intergenic 30.0%
AATAGCACAAAAGGACTTAT+GGG - Chr6:40692055-40692074 MsG0680032416.01.T01:intron 30.0%
AGGACCTATTTATACAACTA+AGG - Chr6:40692622-40692641 MsG0680032416.01.T01:intron 30.0%
ATAGTACTCCAAATGAGAAA+AGG - Chr6:40690483-40690502 MsG0680032416.01.T01:intron 30.0%
ATCAGTCTATCAAAAATAGC+GGG - Chr6:40690175-40690194 MsG0680032416.01.T01:intron 30.0%
ATGCATATCATCCTATTTGA+TGG + Chr6:40691383-40691402 None:intergenic 30.0%
CACTTAAGAAAATGCACATA+AGG - Chr6:40692895-40692914 MsG0680032416.01.T01:intron 30.0%
CATCTATAGCATCAAAAATG+GGG + Chr6:40690953-40690972 None:intergenic 30.0%
CCATTGTTTATGTTCATATG+AGG - Chr6:40692298-40692317 MsG0680032416.01.T01:intron 30.0%
CCTCATATGAACATAAACAA+TGG + Chr6:40692301-40692320 None:intergenic 30.0%
CCTCTTTAGATGATATACAA+AGG - Chr6:40691929-40691948 MsG0680032416.01.T01:intron 30.0%
CCTTTAATCCATAATGACAT+GGG - Chr6:40692460-40692479 MsG0680032416.01.T01:intron 30.0%
CCTTTGTATATCATCTAAAG+AGG + Chr6:40691932-40691951 None:intergenic 30.0%
CTATTGGATCCACATTATTA+CGG + Chr6:40689376-40689395 None:intergenic 30.0%
CTTTAATCCATAATGACATG+GGG - Chr6:40692461-40692480 MsG0680032416.01.T01:intron 30.0%
GAACCAATTTCTTTGTAGAA+GGG + Chr6:40691261-40691280 None:intergenic 30.0%
GATCAAAAGAGCAAAACAAT+TGG - Chr6:40691055-40691074 MsG0680032416.01.T01:intron 30.0%
GATCAGTCTATCAAAAATAG+CGG - Chr6:40690174-40690193 MsG0680032416.01.T01:intron 30.0%
GCATGAAAGTTTAAAAATGC+TGG + Chr6:40691677-40691696 None:intergenic 30.0%
GGATGATCAATTCCATAAAA+TGG + Chr6:40691329-40691348 None:intergenic 30.0%
GGTAAAAATACTTCTTGAGA+AGG + Chr6:40690891-40690910 None:intergenic 30.0%
GTCATCTATAGCATCAAAAA+TGG + Chr6:40690955-40690974 None:intergenic 30.0%
GTCTAGTTACTAAGAATTTC+TGG - Chr6:40691117-40691136 MsG0680032416.01.T01:intron 30.0%
GTGGAGATAATGAAGAAAAA+TGG + Chr6:40690806-40690825 None:intergenic 30.0%
GTTCACTATTTGAGGATTAT+GGG + Chr6:40689860-40689879 None:intergenic 30.0%
TAATGAAGAAAAATGGTGTG+TGG + Chr6:40690799-40690818 None:intergenic 30.0%
TAATGGAATGATATTGGTGA+GGG - Chr6:40689464-40689483 MsG0680032416.01.T01:intron 30.0%
TACTTCTTGAGAAGGATTAA+TGG + Chr6:40690883-40690902 None:intergenic 30.0%
TAGTTGTATAAATAGGTCCT+AGG + Chr6:40692622-40692641 None:intergenic 30.0%
TCATCATTGAATAGCACAAA+AGG - Chr6:40692046-40692065 MsG0680032416.01.T01:intron 30.0%
TCCATTCACAAAAATATCCA+AGG - Chr6:40690581-40690600 MsG0680032416.01.T01:intron 30.0%
TCTTAATCGTTCACTATTTG+AGG + Chr6:40689868-40689887 None:intergenic 30.0%
TGAACCAATTTCTTTGTAGA+AGG + Chr6:40691262-40691281 None:intergenic 30.0%
TGGCTATAAGAGTTTATTGA+AGG - Chr6:40689007-40689026 MsG0680032416.01.T01:CDS 30.0%
TGTATCAAATATTAGGGTGA+AGG - Chr6:40689930-40689949 MsG0680032416.01.T01:intron 30.0%
TGTGATAAATCTTCTGTGTT+CGG - Chr6:40692762-40692781 MsG0680032416.01.T01:intron 30.0%
TTTCTTTGATATGTCTCCAT+AGG - Chr6:40692413-40692432 MsG0680032416.01.T01:intron 30.0%
! AACGTTTTGCATGTGTTTTT+TGG - Chr6:40689716-40689735 MsG0680032416.01.T01:intron 30.0%
! ATAATGGAATGATATTGGTG+AGG - Chr6:40689463-40689482 MsG0680032416.01.T01:intron 30.0%
! ATGGATTAAAGGGAATCATA+GGG + Chr6:40692452-40692471 None:intergenic 30.0%
! CCATGTCATTATGGATTAAA+GGG + Chr6:40692462-40692481 None:intergenic 30.0%
! GTATGGTAACCAATTTCTTT+TGG - Chr6:40689497-40689516 MsG0680032416.01.T01:intron 30.0%
! TAAGACTTGATTCGAAGAAT+AGG + Chr6:40689551-40689570 None:intergenic 30.0%
! TATCTCTAGGGAGAAAAATT+AGG - Chr6:40692385-40692404 MsG0680032416.01.T01:intron 30.0%
! TATGGATTAAAGGGAATCAT+AGG + Chr6:40692453-40692472 None:intergenic 30.0%
! TGCATTTTCTTAAGTGCTTT+TGG + Chr6:40692891-40692910 None:intergenic 30.0%
! TTCTGGGAAGAATACTATTT+CGG - Chr6:40689617-40689636 MsG0680032416.01.T01:intron 30.0%
! TTGGGTTATGATAGGTTTTT+GGG - Chr6:40690016-40690035 MsG0680032416.01.T01:CDS 30.0%
! TTTTAATCCAGCCATCAAAT+AGG - Chr6:40691369-40691388 MsG0680032416.01.T01:intron 30.0%
!! ACCTTGGATATTTTTGTGAA+TGG + Chr6:40690585-40690604 None:intergenic 30.0%
!! ACGTTTTGCATGTGTTTTTT+GGG - Chr6:40689717-40689736 MsG0680032416.01.T01:intron 30.0%
!! ATTGTTTTGCTCTTTTGATC+CGG + Chr6:40691055-40691074 None:intergenic 30.0%
!! GACATTAAAAGTGTCAACAA+AGG + Chr6:40692340-40692359 None:intergenic 30.0%
!! GTGGTTAGTTTATTTAGCAA+CGG + Chr6:40690912-40690931 None:intergenic 30.0%
!! TTATTAGGTTGGGTTATGAT+AGG - Chr6:40690008-40690027 MsG0680032416.01.T01:CDS 30.0%
AAATTGCTGGAACCAATTTC+GGG - Chr6:40689680-40689699 MsG0680032416.01.T01:intron 35.0%
AACAAAGGGTTATGGACTTA+TGG + Chr6:40692325-40692344 None:intergenic 35.0%
AACAATGCTTTATCTGGTGA+AGG + Chr6:40692109-40692128 None:intergenic 35.0%
AAGCAAAAGCTTGACACAAT+TGG - Chr6:40692736-40692755 MsG0680032416.01.T01:intron 35.0%
AATAACAAAAGGGGTGAAAC+TGG + Chr6:40689182-40689201 None:intergenic 35.0%
AATTGGAACCTTTATATCGG+TGG + Chr6:40689246-40689265 None:intergenic 35.0%
ACAACTAAGGATAGAGTTGT+TGG - Chr6:40692635-40692654 MsG0680032416.01.T01:intron 35.0%
ACCTTATGGTGATTGTTATC+TGG + Chr6:40693116-40693135 None:intergenic 35.0%
AGCAAAAGCTTGACACAATT+GGG - Chr6:40692737-40692756 MsG0680032416.01.T01:intron 35.0%
AGTGACAGAACAATCACTAT+TGG - Chr6:40689411-40689430 MsG0680032416.01.T01:intron 35.0%
ATTGGAACCTTTATATCGGT+GGG + Chr6:40689245-40689264 None:intergenic 35.0%
CAAATTGCTGGAACCAATTT+CGG - Chr6:40689679-40689698 MsG0680032416.01.T01:intron 35.0%
CCCTTTAATCCATAATGACA+TGG - Chr6:40692459-40692478 MsG0680032416.01.T01:intron 35.0%
CGTTCACTATTTGAGGATTA+TGG + Chr6:40689861-40689880 None:intergenic 35.0%
CTACCCTTCTACAAAGAAAT+TGG - Chr6:40691255-40691274 MsG0680032416.01.T01:intron 35.0%
GAACAATACAGCAATAGCTA+CGG + Chr6:40691015-40691034 None:intergenic 35.0%
GAATAGCACAAAAGGACTTA+TGG - Chr6:40692054-40692073 MsG0680032416.01.T01:intron 35.0%
GAGGATTAATTGTGGATTTG+TGG + Chr6:40690848-40690867 None:intergenic 35.0%
GGGAGTTAAGTTAAAACCTA+TGG + Chr6:40692432-40692451 None:intergenic 35.0%
GTGATAAATCTTCTGTGTTC+GGG - Chr6:40692763-40692782 MsG0680032416.01.T01:intron 35.0%
TAAACTAACCACTGCAAAAG+TGG - Chr6:40690920-40690939 MsG0680032416.01.T01:intron 35.0%
TCAAACTTGTCTCCTTTAGT+TGG + Chr6:40690144-40690163 None:intergenic 35.0%
TCAACACATGCTCTCTTATT+TGG - Chr6:40691635-40691654 MsG0680032416.01.T01:intron 35.0%
TCAACATTGGTGAAATCGTA+AGG + Chr6:40691433-40691452 None:intergenic 35.0%
TGAATGTCTTATGCTTTCTC+AGG - Chr6:40693086-40693105 MsG0680032416.01.T01:intron 35.0%
TTAATGGCTGAAACAGTATG+AGG + Chr6:40690867-40690886 None:intergenic 35.0%
! AAAGTGTCAACAAAGGGTTA+TGG + Chr6:40692333-40692352 None:intergenic 35.0%
! ACTTGATTCGAAGAATAGGT+GGG + Chr6:40689547-40689566 None:intergenic 35.0%
! AGGAGACAAGTTTGAAACAT+CGG - Chr6:40690149-40690168 MsG0680032416.01.T01:intron 35.0%
! AGGGTGAAGGTATAAATGTA+GGG - Chr6:40689943-40689962 MsG0680032416.01.T01:CDS 35.0%
! ATATCATCCTATTTGATGGC+TGG + Chr6:40691379-40691398 None:intergenic 35.0%
! CCCATGTCATTATGGATTAA+AGG + Chr6:40692463-40692482 None:intergenic 35.0%
! CTGTTTAGTTTAAAGCGAAG+CGG + Chr6:40690042-40690061 None:intergenic 35.0%
! CTTAGCATATAGGGAGTTTT+GGG - Chr6:40692786-40692805 MsG0680032416.01.T01:intron 35.0%
! GTTGGGTTATGATAGGTTTT+TGG - Chr6:40690015-40690034 MsG0680032416.01.T01:CDS 35.0%
! TAGGGTGAAGGTATAAATGT+AGG - Chr6:40689942-40689961 MsG0680032416.01.T01:CDS 35.0%
! TCTTGATGGAATGTTGATTG+AGG + Chr6:40692507-40692526 None:intergenic 35.0%
! TGAAGTGAAATTGGTGATTG+TGG + Chr6:40690755-40690774 None:intergenic 35.0%
!! AGTTTATGGAAGGTACCTTA+TGG + Chr6:40693130-40693149 None:intergenic 35.0%
!! TCACCAGATAAAGCATTGTT+AGG - Chr6:40692109-40692128 MsG0680032416.01.T01:intron 35.0%
!!! AGTAGAAGCATCTTGTTTTG+AGG - Chr6:40690404-40690423 MsG0680032416.01.T01:intron 35.0%
AATGCTTTATCTGGTGAAGG+TGG + Chr6:40692106-40692125 None:intergenic 40.0%
AGCATTGTTAGGAGCAGTTA+TGG - Chr6:40692120-40692139 MsG0680032416.01.T01:intron 40.0%
AGTTGTGTACCTTTGTGTTG+TGG - Chr6:40692595-40692614 MsG0680032416.01.T01:intron 40.0%
ATGATCACCCCATGTCATTA+TGG + Chr6:40692471-40692490 None:intergenic 40.0%
ATGTGGATCCAATAGTGAGA+AGG - Chr6:40689381-40689400 MsG0680032416.01.T01:intron 40.0%
ATTCCATCAAGATGCGAGTT+GGG - Chr6:40692515-40692534 MsG0680032416.01.T01:intron 40.0%
GAAGAATACTATTTCGGCTG+AGG - Chr6:40689623-40689642 MsG0680032416.01.T01:intron 40.0%
GATTTCGACATTGATACCCA+CGG + Chr6:40692687-40692706 None:intergenic 40.0%
GCCAGATAACAATCACCATA+AGG - Chr6:40693112-40693131 MsG0680032416.01.T01:intron 40.0%
GCGGGATAAACAAACTGATT+CGG - Chr6:40690193-40690212 MsG0680032416.01.T01:intron 40.0%
GCTCCTAACAATGCTTTATC+TGG + Chr6:40692115-40692134 None:intergenic 40.0%
GCTCTGTACCCAAAAGAAAT+TGG + Chr6:40689509-40689528 None:intergenic 40.0%
GGACAACACTGATAGTTACT+TGG + Chr6:40690989-40691008 None:intergenic 40.0%
GGAGGTTTGTGAAGTGAAAT+TGG + Chr6:40690764-40690783 None:intergenic 40.0%
GGTGTGTGGTGATTGAAATA+GGG + Chr6:40690785-40690804 None:intergenic 40.0%
GTACATATGTTGGACACGAA+TGG + Chr6:40689132-40689151 None:intergenic 40.0%
GTGAGGGATAGAGAAAAGTA+TGG - Chr6:40689480-40689499 MsG0680032416.01.T01:intron 40.0%
GTGGGTATCAATGTCGAAAT+CGG - Chr6:40692686-40692705 MsG0680032416.01.T01:intron 40.0%
TGGTGTGTGGTGATTGAAAT+AGG + Chr6:40690786-40690805 None:intergenic 40.0%
TGTGGATCCAATAGTGAGAA+GGG - Chr6:40689382-40689401 MsG0680032416.01.T01:intron 40.0%
TTGGAACCTTTATATCGGTG+GGG + Chr6:40689244-40689263 None:intergenic 40.0%
! AAAAGAGCAAGTTGACGAGT+TGG - Chr6:40690065-40690084 MsG0680032416.01.T01:CDS 40.0%
! ACAACGTTTTCTGGATGAGT+GGG + Chr6:40689833-40689852 None:intergenic 40.0%
! AGGGGTGAAAGTACATATGT+TGG + Chr6:40689142-40689161 None:intergenic 40.0%
! ATGGGTTTGACAACGTTTTC+TGG + Chr6:40689842-40689861 None:intergenic 40.0%
! GACTTGATTCGAAGAATAGG+TGG + Chr6:40689548-40689567 None:intergenic 40.0%
! GCTTAGCATATAGGGAGTTT+TGG - Chr6:40692785-40692804 MsG0680032416.01.T01:intron 40.0%
! GGGTGAAGGTATAAATGTAG+GGG - Chr6:40689944-40689963 MsG0680032416.01.T01:CDS 40.0%
! GTAAGTGAGAGTGCAACATT+TGG + Chr6:40690731-40690750 None:intergenic 40.0%
!! AAGTGGATTAGGCCAACTAA+AGG - Chr6:40690129-40690148 MsG0680032416.01.T01:CDS 40.0%
!! GCTTAATTCCACTTTTGCAG+TGG + Chr6:40690931-40690950 None:intergenic 40.0%
!! TTTCTTTTGGGTACAGAGCA+AGG - Chr6:40689510-40689529 MsG0680032416.01.T01:intron 40.0%
!!! AGAAGCATCTTGTTTTGAGG+AGG - Chr6:40690407-40690426 MsG0680032416.01.T01:intron 40.0%
!!! TATAGGGAGTTTTGGGTCTT+AGG - Chr6:40692793-40692812 MsG0680032416.01.T01:intron 40.0%
ACATGGGGTGATCATTGATG+TGG - Chr6:40692476-40692495 MsG0680032416.01.T01:intron 45.0%
ACGAGAGAATAGTGGTGAGT+GGG + Chr6:40689808-40689827 None:intergenic 45.0%
ACTTCCGCGTTGAAAAACCA+GGG + Chr6:40690113-40690132 None:intergenic 45.0%
AGTTCACCCCACCGATATAA+AGG - Chr6:40689235-40689254 MsG0680032416.01.T01:intron 45.0%
AGTTCACGTAACCGTAGTCT+GGG + Chr6:40689773-40689792 None:intergenic 45.0%
ATACAGCAATAGCTACGGAG+AGG + Chr6:40691010-40691029 None:intergenic 45.0%
ATTCCCAACTCGCATCTTGA+TGG + Chr6:40692521-40692540 None:intergenic 45.0%
CATGGGGTGATCATTGATGT+GGG - Chr6:40692477-40692496 MsG0680032416.01.T01:intron 45.0%
CATTCCATCAAGATGCGAGT+TGG - Chr6:40692514-40692533 MsG0680032416.01.T01:intron 45.0%
GTGTGGTGATTGAAATAGGG+AGG + Chr6:40690782-40690801 None:intergenic 45.0%
GTGTTCGGGCTTAGCATATA+GGG - Chr6:40692777-40692796 MsG0680032416.01.T01:intron 45.0%
TACCTTTGTGTTGTGGTCCT+AGG - Chr6:40692602-40692621 MsG0680032416.01.T01:intron 45.0%
TACTACGCCCTTCTCACTAT+TGG + Chr6:40689392-40689411 None:intergenic 45.0%
TAGTTCACGTAACCGTAGTC+TGG + Chr6:40689774-40689793 None:intergenic 45.0%
TATTCCTGCAACCCAGACTA+CGG - Chr6:40689759-40689778 MsG0680032416.01.T01:intron 45.0%
TGATACCCACGGTTTGTAAC+CGG + Chr6:40692676-40692695 None:intergenic 45.0%
TGTGTTCGGGCTTAGCATAT+AGG - Chr6:40692776-40692795 MsG0680032416.01.T01:intron 45.0%
TTGTTAGGAGCAGTTATGGC+TGG - Chr6:40692124-40692143 MsG0680032416.01.T01:intron 45.0%
! CGGTTGATTCTTCCCGAAAT+TGG + Chr6:40689695-40689714 None:intergenic 45.0%
! GACAACGTTTTCTGGATGAG+TGG + Chr6:40689834-40689853 None:intergenic 45.0%
! GATGGAATGTTGATTGAGGC+AGG + Chr6:40692503-40692522 None:intergenic 45.0%
! GGTATAAATGTAGGGGTGTG+AGG - Chr6:40689951-40689970 MsG0680032416.01.T01:CDS 45.0%
! TTAAGCGTCAGAGTGTTTGC+TGG + Chr6:40692545-40692564 None:intergenic 45.0%
! TTTCAACGCGGAAGTGGATT+AGG - Chr6:40690118-40690137 MsG0680032416.01.T01:CDS 45.0%
!! AAAATAAGATAATTTATAAT+AGG - Chr6:40691521-40691540 MsG0680032416.01.T01:intron 5.0%
!! AAACATTTATATAATAAATT+TGG + Chr6:40689987-40690006 None:intergenic 5.0%
!! AACATTTATATAATAAATTT+GGG + Chr6:40689986-40690005 None:intergenic 5.0%
!!! ATTTACAAATTTTAAAATAT+AGG + Chr6:40691350-40691369 None:intergenic 5.0%
!!! TTATATAAATGTTTTTTATT+AGG - Chr6:40689993-40690012 MsG0680032416.01.T01:CDS 5.0%
AGTGGGTCACGAGAGAATAG+TGG + Chr6:40689816-40689835 None:intergenic 50.0%
AGTTGTTGGAGTAGTCGCTG+AGG - Chr6:40692649-40692668 MsG0680032416.01.T01:intron 50.0%
CACGAGAGAATAGTGGTGAG+TGG + Chr6:40689809-40689828 None:intergenic 50.0%
CACTTCCGCGTTGAAAAACC+AGG + Chr6:40690114-40690133 None:intergenic 50.0%
GTCCTAGGACCACAACACAA+AGG + Chr6:40692607-40692626 None:intergenic 50.0%
GTTGTTGGAGTAGTCGCTGA+GGG - Chr6:40692650-40692669 MsG0680032416.01.T01:intron 50.0%
TGGGGTGAACTCATACCGAA+TGG + Chr6:40689226-40689245 None:intergenic 50.0%
!! CTGGTTTTTCAACGCGGAAG+TGG - Chr6:40690112-40690131 MsG0680032416.01.T01:CDS 50.0%
GATATCATTTCGCCTCGCCC+TGG - Chr6:40690093-40690112 MsG0680032416.01.T01:CDS 55.0%
GTAACCGTAGTCTGGGTTGC+AGG + Chr6:40689766-40689785 None:intergenic 55.0%
TCTTTCCCACTATCCAGCGC+CGG - Chr6:40691033-40691052 MsG0680032416.01.T01:intron 55.0%
! TTGATCCGGCGCTGGATAGT+GGG + Chr6:40691041-40691060 None:intergenic 55.0%
! TTGCTCTTTTGATCCGGCGC+TGG + Chr6:40691049-40691068 None:intergenic 55.0%
! TTTGATCCGGCGCTGGATAG+TGG + Chr6:40691042-40691061 None:intergenic 55.0%
!! CTCGCCCTGGTTTTTCAACG+CGG - Chr6:40690106-40690125 MsG0680032416.01.T01:CDS 55.0%
CGCGTTGAAAAACCAGGGCG+AGG + Chr6:40690108-40690127 None:intergenic 60.0%
GAGGGCCGGTTACAAACCGT+GGG - Chr6:40692668-40692687 MsG0680032416.01.T01:intron 60.0%
TGAGGGCCGGTTACAAACCG+TGG - Chr6:40692667-40692686 MsG0680032416.01.T01:intron 60.0%
TTGGAGTAGTCGCTGAGGGC+CGG - Chr6:40692654-40692673 MsG0680032416.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 40689002 40693169 40689002 ID=MsG0680032416.01;Name=MsG0680032416.01
Chr6 mRNA 40689002 40693169 40689002 ID=MsG0680032416.01.T01;Parent=MsG0680032416.01;Name=MsG0680032416.01.T01;_AED=0.50;_eAED=0.57;_QI=0|0|0|0.66|0|0|3|0|100
Chr6 exon 40693143 40693169 40693143 ID=MsG0680032416.01.T01:exon:22131;Parent=MsG0680032416.01.T01
Chr6 exon 40689939 40690152 40689939 ID=MsG0680032416.01.T01:exon:22130;Parent=MsG0680032416.01.T01
Chr6 exon 40689002 40689063 40689002 ID=MsG0680032416.01.T01:exon:22129;Parent=MsG0680032416.01.T01
Chr6 CDS 40693143 40693169 40693143 ID=MsG0680032416.01.T01:cds;Parent=MsG0680032416.01.T01
Chr6 CDS 40689939 40690152 40689939 ID=MsG0680032416.01.T01:cds;Parent=MsG0680032416.01.T01
Chr6 CDS 40689002 40689063 40689002 ID=MsG0680032416.01.T01:cds;Parent=MsG0680032416.01.T01
Gene Sequence

>MsG0680032416.01.T01

ATGAATGGCTATAAGAGTTTATTGAAGAAATATAGGTCTTCTGGAGTGAAGAAGTCATCATTGAATAGCACAAAAGGACTTATGGGATCAACTAAAAAGAAATCTAAGAATCCACCTTCACCAGATAAAGCATTGTTAGGAGCAGTTATGGCTGGTGTTATTGCTGTTATTCTCTATAAGTTCACAACAACTATAGAAGCATCTCTATATCGCCAAACAATTTCAGATAATTTCTCGGTTTGTTCGCCAGATAACAATCACCATAAGGTACCTTCCATAAACTTATCTCAAATATGTCCTTAA

Protein sequence

>MsG0680032416.01.T01

MNGYKSLLKKYRSSGVKKSSLNSTKGLMGSTKKKSKNPPSPDKALLGAVMAGVIAVILYKFTTTIEASLYRQTISDNFSVCSPDNNHHKVPSINLSQICP*