AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680033852.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033852.01.T01 MTR_6g465530 91.000 200 16 2 1 200 1 198 1.55e-117 332
MsG0680033852.01.T01 MTR_6g465510 87.081 209 17 2 1 200 1 208 8.01e-112 318
MsG0680033852.01.T01 MTR_6g465420 76.684 193 38 3 3 194 24 210 1.32e-103 299
MsG0680033852.01.T01 MTR_6g465460 77.895 190 32 3 7 194 28 209 2.93e-102 296
MsG0680033852.01.T01 MTR_6g465450 78.974 195 33 3 2 194 23 211 4.13e-101 292
MsG0680033852.01.T01 MTR_6g465430 77.320 194 35 3 3 194 24 210 1.32e-97 283
MsG0680033852.01.T01 MTR_6g465690 75.000 188 39 2 5 191 35 215 2.71e-94 275
MsG0680033852.01.T01 MTR_6g466000 69.458 203 49 2 6 200 30 227 2.77e-94 274
MsG0680033852.01.T01 MTR_6g466130 72.000 200 50 3 1 200 35 228 3.89e-91 266
MsG0680033852.01.T01 MTR_6g465850 55.102 245 61 2 5 200 35 279 1.30e-73 224
MsG0680033852.01.T01 MTR_1g101600 59.701 201 65 4 4 200 12 200 8.01e-69 209
MsG0680033852.01.T01 MTR_6g465990 58.621 203 51 3 6 200 16 193 2.20e-66 202
MsG0680033852.01.T01 MTR_6g466020 57.672 189 51 3 10 197 20 180 1.43e-60 187
MsG0680033852.01.T01 MTR_5g010930 48.095 210 77 7 11 200 27 224 3.60e-52 167
MsG0680033852.01.T01 MTR_5g010940 46.635 208 95 5 4 200 25 227 1.29e-50 163
MsG0680033852.01.T01 MTR_5g010910 47.959 196 86 5 16 200 32 222 1.53e-49 160
MsG0680033852.01.T01 MTR_4g102660 52.113 213 79 9 3 200 14 218 2.49e-48 157
MsG0680033852.01.T01 MTR_3g110205 57.895 95 40 0 28 122 38 132 3.86e-32 115
MsG0680033852.01.T01 MTR_8g006410 65.000 80 28 0 28 107 47 126 6.23e-32 115
MsG0680033852.01.T01 MTR_7g117690 60.227 88 35 0 20 107 15 102 3.94e-31 112
MsG0680033852.01.T01 MTR_7g046260 62.963 81 30 0 27 107 55 135 1.78e-30 112
MsG0680033852.01.T01 MTR_2g101340 55.446 101 39 2 13 107 15 115 2.21e-30 111
MsG0680033852.01.T01 MTR_8g013860 63.291 79 29 0 29 107 43 121 3.43e-30 110
MsG0680033852.01.T01 MTR_2g085015 39.759 166 80 5 27 174 41 204 5.36e-30 110
MsG0680033852.01.T01 MTR_8g102800 56.566 99 43 0 23 121 27 125 1.31e-29 109
MsG0680033852.01.T01 MTR_5g012910 62.025 79 30 0 29 107 24 102 2.06e-29 107
MsG0680033852.01.T01 MTR_6g088405 62.821 78 29 0 30 107 41 118 5.10e-29 107
MsG0680033852.01.T01 MTR_8g027465 56.383 94 38 1 17 107 23 116 1.73e-28 105
MsG0680033852.01.T01 MTR_4g100650 60.256 78 31 0 30 107 71 148 2.04e-25 99.4
MsG0680033852.01.T01 MTR_4g102670 55.696 79 34 1 29 107 11 88 8.57e-25 95.5
MsG0680033852.01.T01 MTR_6g088425 61.628 86 33 0 29 114 45 130 3.99e-24 95.5
MsG0680033852.01.T01 MTR_4g035430 54.217 83 38 0 32 114 31 113 9.31e-24 94.4
MsG0680033852.01.T01 MTR_5g008590 36.932 176 102 3 33 199 11 186 4.34e-22 89.0
MsG0680033852.01.T01 MTR_1g006660 56.522 92 36 1 20 107 30 121 1.30e-21 89.4
MsG0680033852.01.T01 MTR_5g008550 35.915 142 86 2 33 169 21 162 4.29e-20 84.0
MsG0680033852.01.T01 MTR_2g435590 52.000 75 33 1 17 91 83 154 6.41e-18 79.7
MsG0680033852.01.T01 MTR_8g090350 45.161 93 46 2 17 104 95 187 9.17e-18 79.7
MsG0680033852.01.T01 MTR_1g060910 36.416 173 70 8 17 174 3 150 1.15e-17 77.0
MsG0680033852.01.T01 MTR_5g008470 45.238 84 46 0 35 118 77 160 1.43e-17 77.0
MsG0680033852.01.T01 MTR_3g102100 52.113 71 33 1 18 88 31 100 1.62e-17 76.6
MsG0680033852.01.T01 MTR_1g014780 56.667 60 26 0 32 91 37 96 1.67e-17 77.8
MsG0680033852.01.T01 MTR_2g043030 29.255 188 111 4 32 200 18 202 4.37e-17 76.3
MsG0680033852.01.T01 MTR_3g105510 44.706 85 47 0 33 117 37 121 9.30e-17 76.3
MsG0680033852.01.T01 MTR_1g014820 42.391 92 49 1 32 119 26 117 1.05e-16 76.3
MsG0680033852.01.T01 MTR_7g021010 54.412 68 30 1 26 92 4 71 1.07e-16 73.6
MsG0680033852.01.T01 MTR_1g101550 42.254 142 76 4 33 170 57 196 1.27e-16 75.5
MsG0680033852.01.T01 MTR_7g020980 48.101 79 39 1 14 92 34 110 1.61e-16 73.9
MsG0680033852.01.T01 MTR_1g019110 37.374 99 59 1 33 131 44 139 1.88e-16 73.9
MsG0680033852.01.T01 MTR_4g086220 62.500 56 21 0 33 88 96 151 2.17e-16 75.1
MsG0680033852.01.T01 MTR_3g074130 59.322 59 24 0 32 90 149 207 2.64e-16 76.3
MsG0680033852.01.T01 MTR_7g021010 43.373 83 47 0 29 111 47 129 2.69e-16 73.6
MsG0680033852.01.T01 MTR_5g062700 59.322 59 24 0 32 90 172 230 2.78e-16 76.3
MsG0680033852.01.T01 MTR_2g105380 51.471 68 33 0 21 88 105 172 2.84e-16 76.3
MsG0680033852.01.T01 MTR_2g043050 45.882 85 46 0 32 116 18 102 2.91e-16 74.3
MsG0680033852.01.T01 MTR_1g087920 45.652 92 48 1 11 100 53 144 2.96e-16 75.5
MsG0680033852.01.T01 MTR_1g028560 59.649 57 23 0 33 89 115 171 3.83e-16 75.9
MsG0680033852.01.T01 MTR_5g082950 64.286 56 20 0 33 88 66 121 4.08e-16 75.5
MsG0680033852.01.T01 MTR_1g090170 55.556 63 28 0 28 90 147 209 4.11e-16 75.5
MsG0680033852.01.T01 MTR_1g014860 51.562 64 31 0 28 91 17 80 4.78e-16 73.9
MsG0680033852.01.T01 MTR_5g083340 60.345 58 23 0 33 90 85 142 5.23e-16 75.9
MsG0680033852.01.T01 MTR_2g090235 59.322 59 24 0 32 90 217 275 5.51e-16 75.9
MsG0680033852.01.T01 MTR_8g092460 56.667 60 26 0 33 92 145 204 5.56e-16 75.1
MsG0680033852.01.T01 MTR_1g090170 55.556 63 28 0 28 90 234 296 6.33e-16 75.5
MsG0680033852.01.T01 MTR_4g086160 60.714 56 22 0 33 88 96 151 9.07e-16 73.2
MsG0680033852.01.T01 MTR_5g016750 57.143 56 24 0 33 88 25 80 1.03e-15 72.0
MsG0680033852.01.T01 MTR_2g089170 36.154 130 67 4 33 158 65 182 1.03e-15 72.4
MsG0680033852.01.T01 MTR_3g053690 59.375 64 23 1 25 88 22 82 1.24e-15 72.8
MsG0680033852.01.T01 MTR_4g086190 60.714 56 22 0 33 88 96 151 1.27e-15 72.8
MsG0680033852.01.T01 MTR_1g014800 53.333 60 28 0 32 91 30 89 1.59e-15 72.4
MsG0680033852.01.T01 MTR_4g086165 60.714 56 22 0 33 88 82 137 1.79e-15 72.0
MsG0680033852.01.T01 MTR_2g078680 60.714 56 22 0 33 88 31 86 2.13e-15 71.6
MsG0680033852.01.T01 MTR_4g114570 52.113 71 27 1 33 103 7 70 2.48e-15 71.6
MsG0680033852.01.T01 MTR_7g092190 62.500 56 21 0 33 88 30 85 2.84e-15 72.8
MsG0680033852.01.T01 MTR_3g105480 44.578 83 46 0 35 117 33 115 3.49e-15 71.6
MsG0680033852.01.T01 MTR_5g009620 44.565 92 45 1 3 88 76 167 5.98e-15 72.0
MsG0680033852.01.T01 MTR_1g074310 54.839 62 27 1 33 93 21 82 6.25e-15 69.3
MsG0680033852.01.T01 MTR_4g078710 36.893 103 59 1 33 135 28 124 6.67e-15 70.9
MsG0680033852.01.T01 MTR_2g438180 58.065 62 25 1 33 93 14 75 8.14e-15 68.6
MsG0680033852.01.T01 MTR_8g022820 51.515 66 32 0 23 88 114 179 8.83e-15 72.0
MsG0680033852.01.T01 MTR_8g022820 51.515 66 32 0 23 88 114 179 8.83e-15 72.0
MsG0680033852.01.T01 MTR_8g022820 51.515 66 32 0 23 88 113 178 9.14e-15 72.0
MsG0680033852.01.T01 MTR_7g028925 55.000 60 24 1 32 91 28 84 9.20e-15 67.4
MsG0680033852.01.T01 MTR_0939s0010 58.929 56 23 0 33 88 65 120 1.09e-14 69.7
MsG0680033852.01.T01 MTR_5g083330 50.685 73 36 0 18 90 20 92 1.34e-14 70.9
MsG0680033852.01.T01 MTR_2g015050 52.174 69 32 1 21 88 122 190 1.55e-14 70.5
MsG0680033852.01.T01 MTR_4g010640 58.929 56 23 0 33 88 7 62 2.05e-14 69.3
MsG0680033852.01.T01 MTR_2g103700 55.000 60 27 0 33 92 7 66 3.37e-14 67.8
MsG0680033852.01.T01 MTR_3g072610 49.438 89 41 2 33 117 25 113 4.04e-14 68.6
MsG0680033852.01.T01 MTR_2g014340 57.143 56 24 0 33 88 19 74 5.58e-14 67.8
MsG0680033852.01.T01 MTR_3g090760 32.237 152 91 2 17 158 89 238 5.93e-14 69.7
MsG0680033852.01.T01 MTR_1g048610 56.140 57 24 1 33 88 89 145 7.16e-14 68.2
MsG0680033852.01.T01 MTR_3g106290 60.714 56 22 0 33 88 8 63 8.16e-14 67.0
MsG0680033852.01.T01 MTR_1g070070 56.140 57 24 1 33 88 21 77 1.24e-13 65.9
MsG0680033852.01.T01 MTR_4g100420 57.895 57 23 1 33 88 157 213 1.48e-13 68.2
MsG0680033852.01.T01 MTR_4g054740 43.023 86 43 2 8 92 77 157 1.58e-13 67.4
MsG0680033852.01.T01 MTR_4g008860 60.714 56 22 0 33 88 8 63 1.76e-13 66.2
MsG0680033852.01.T01 MTR_2g043020 28.947 190 110 5 32 200 18 203 1.81e-13 66.6
MsG0680033852.01.T01 MTR_2g014300 58.929 56 23 0 33 88 15 70 2.25e-13 65.5
MsG0680033852.01.T01 MTR_1g074230 57.895 57 23 1 33 88 19 75 2.70e-13 64.7
MsG0680033852.01.T01 MTR_2g043040 41.176 85 50 0 32 116 18 102 3.65e-13 66.2
MsG0680033852.01.T01 MTR_2g016730 42.857 91 46 2 22 111 11 96 3.83e-13 67.0
MsG0680033852.01.T01 MTR_5g085100 47.674 86 35 2 13 98 29 104 3.88e-13 66.6
MsG0680033852.01.T01 MTR_4g054360 45.122 82 39 2 12 92 108 184 3.91e-13 66.6
MsG0680033852.01.T01 MTR_4g100450 56.140 57 24 1 33 88 154 210 4.03e-13 67.0
MsG0680033852.01.T01 MTR_5g085070 53.030 66 24 1 33 98 51 109 5.22e-13 66.2
MsG0680033852.01.T01 MTR_5g075570 48.333 60 31 0 29 88 120 179 1.03e-12 65.5
MsG0680033852.01.T01 MTR_5g008540 47.541 61 32 0 35 95 26 86 1.75e-12 61.2
MsG0680033852.01.T01 MTR_4g088005 47.826 69 35 1 21 88 45 113 2.26e-12 61.6
MsG0680033852.01.T01 MTR_8g099215 48.148 81 33 2 17 88 82 162 2.40e-12 64.7
MsG0680033852.01.T01 MTR_8g069360 53.571 56 26 0 33 88 44 99 2.77e-12 65.1
MsG0680033852.01.T01 MTR_1g090290 51.613 62 27 2 28 88 110 169 3.08e-12 63.2
MsG0680033852.01.T01 MTR_1g074250 49.206 63 30 1 30 90 16 78 3.47e-12 61.6
MsG0680033852.01.T01 MTR_4g054860 45.783 83 39 3 11 92 114 191 4.34e-12 63.9
MsG0680033852.01.T01 MTR_4g111915 47.458 59 31 0 33 91 53 111 4.71e-12 61.2
MsG0680033852.01.T01 MTR_6g029180 47.222 72 37 1 21 92 22 92 1.03e-11 62.8
MsG0680033852.01.T01 MTR_7g081815 52.632 57 26 1 33 88 61 117 1.33e-11 61.6
MsG0680033852.01.T01 MTR_8g006840 52.632 57 26 1 33 88 125 181 1.34e-11 61.2
MsG0680033852.01.T01 MTR_7g081805 52.632 57 26 1 33 88 61 117 1.39e-11 61.6
MsG0680033852.01.T01 MTR_6g041970 39.535 86 39 1 33 118 18 90 1.46e-11 58.9
MsG0680033852.01.T01 MTR_4g100380 56.140 57 24 1 33 88 145 201 1.62e-11 62.0
MsG0680033852.01.T01 MTR_4g112490 47.458 59 31 0 33 91 53 111 1.63e-11 61.2
MsG0680033852.01.T01 MTR_5g008790 50.000 60 28 1 33 90 18 77 1.84e-11 60.5
MsG0680033852.01.T01 MTR_8g085960 35.354 99 60 3 33 128 25 122 2.13e-11 61.2
MsG0680033852.01.T01 MTR_2g015040 52.632 57 26 1 33 88 63 119 2.18e-11 60.1
MsG0680033852.01.T01 MTR_5g032820 55.357 56 25 0 33 88 46 101 2.64e-11 62.0
MsG0680033852.01.T01 MTR_7g085810 50.000 60 30 0 33 92 30 89 2.86e-11 61.2
MsG0680033852.01.T01 MTR_8g006815 52.632 57 26 1 33 88 96 152 2.87e-11 60.5
MsG0680033852.01.T01 MTR_8g023700 29.560 159 86 2 32 164 116 274 2.89e-11 62.0
MsG0680033852.01.T01 MTR_7g011630 45.833 72 36 1 17 88 29 97 4.28e-11 61.6
MsG0680033852.01.T01 MTR_8g032610 52.727 55 26 0 35 89 29 83 5.21e-11 60.8
MsG0680033852.01.T01 MTR_7g096750 54.386 57 25 1 33 88 20 76 5.23e-11 58.5
MsG0680033852.01.T01 MTR_3g095190 54.795 73 32 1 33 104 170 242 6.00e-11 60.8
MsG0680033852.01.T01 MTR_4g119270 42.466 73 40 1 18 88 36 108 6.25e-11 60.8
MsG0680033852.01.T01 MTR_6g012970 51.786 56 27 0 33 88 38 93 6.91e-11 60.8
MsG0680033852.01.T01 MTR_7g081795 50.877 57 27 1 33 88 60 116 9.54e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033852.01.T01 AT4G25470 56.281 199 69 5 10 200 28 216 2.67e-69 211
MsG0680033852.01.T01 AT4G25480 56.281 199 67 4 11 200 29 216 2.83e-63 195
MsG0680033852.01.T01 AT4G25490 56.500 200 65 5 11 200 26 213 5.64e-62 192
MsG0680033852.01.T01 AT5G51990 51.500 200 80 4 10 200 31 222 6.02e-61 189
MsG0680033852.01.T01 AT1G12610 47.826 207 96 4 5 200 2 207 2.03e-54 172
MsG0680033852.01.T01 AT1G63030 46.429 196 87 3 6 200 3 181 6.56e-54 170
MsG0680033852.01.T01 AT1G63030 46.429 196 87 3 6 200 3 181 6.56e-54 170
MsG0680033852.01.T01 AT5G25810 58.511 94 38 1 22 114 24 117 1.98e-32 116
MsG0680033852.01.T01 AT2G35700 63.750 80 29 0 28 107 40 119 3.29e-31 112
MsG0680033852.01.T01 AT2G44940 39.080 174 75 3 22 168 89 258 1.61e-30 113
MsG0680033852.01.T01 AT4G16750 50.000 110 50 1 3 107 5 114 2.31e-30 110
MsG0680033852.01.T01 AT5G11590 60.465 86 34 0 29 114 47 132 2.36e-30 112
MsG0680033852.01.T01 AT2G36450 41.711 187 96 5 21 200 3 183 1.92e-29 108
MsG0680033852.01.T01 AT4G32800 50.467 107 47 1 20 120 6 112 1.99e-29 108
MsG0680033852.01.T01 AT3G16280 42.391 184 82 5 29 200 75 246 2.94e-29 109
MsG0680033852.01.T01 AT3G16280 42.391 184 82 5 29 200 57 228 3.28e-29 108
MsG0680033852.01.T01 AT1G01250 52.830 106 47 1 5 107 14 119 1.91e-28 105
MsG0680033852.01.T01 AT3G60490 57.317 82 34 1 27 107 64 145 3.74e-25 99.0
MsG0680033852.01.T01 AT2G25820 60.526 76 30 0 32 107 25 100 5.98e-25 97.4
MsG0680033852.01.T01 AT5G52020 43.017 179 87 6 29 200 61 231 1.40e-24 96.7
MsG0680033852.01.T01 AT1G71450 36.095 169 98 3 32 199 23 182 1.17e-23 93.2
MsG0680033852.01.T01 AT2G47520 46.512 86 43 1 9 91 23 108 2.13e-20 84.3
MsG0680033852.01.T01 AT1G21910 48.913 92 40 1 33 117 50 141 3.16e-20 85.1
MsG0680033852.01.T01 AT1G33760 53.933 89 41 0 33 121 20 108 3.73e-20 84.0
MsG0680033852.01.T01 AT1G77200 58.442 77 32 0 31 107 41 117 9.52e-20 84.3
MsG0680033852.01.T01 AT1G46768 58.730 63 25 1 28 90 27 88 7.80e-19 79.3
MsG0680033852.01.T01 AT1G46768 58.730 63 25 1 28 90 27 88 8.08e-19 79.7
MsG0680033852.01.T01 AT1G46768 58.730 63 25 1 28 90 27 88 8.08e-19 79.7
MsG0680033852.01.T01 AT4G13620 61.017 59 23 0 32 90 231 289 1.61e-18 82.8
MsG0680033852.01.T01 AT3G16770 55.556 72 28 1 19 90 69 136 7.29e-18 79.3
MsG0680033852.01.T01 AT2G22200 50.667 75 35 1 32 104 70 144 8.22e-18 79.3
MsG0680033852.01.T01 AT1G22190 54.795 73 31 1 18 90 70 140 8.66e-18 79.3
MsG0680033852.01.T01 AT4G06746 54.839 62 28 0 33 94 36 97 1.20e-17 76.6
MsG0680033852.01.T01 AT4G39780 59.016 61 25 0 28 88 88 148 1.33e-17 79.0
MsG0680033852.01.T01 AT1G12630 39.227 181 98 4 29 200 15 192 2.17e-17 77.0
MsG0680033852.01.T01 AT5G21960 47.619 84 44 0 31 114 5 88 3.07e-17 77.0
MsG0680033852.01.T01 AT3G50260 39.640 111 55 3 26 136 14 112 3.19e-17 75.5
MsG0680033852.01.T01 AT5G65130 53.247 77 34 1 18 92 96 172 3.21e-17 78.2
MsG0680033852.01.T01 AT5G65130 53.247 77 34 1 18 92 94 170 3.26e-17 77.8
MsG0680033852.01.T01 AT1G74930 44.186 86 48 0 33 118 21 106 3.84e-17 76.3
MsG0680033852.01.T01 AT2G23340 46.591 88 41 1 33 114 28 115 3.85e-17 75.9
MsG0680033852.01.T01 AT4G36900 56.667 60 26 0 29 88 26 85 6.33e-17 75.9
MsG0680033852.01.T01 AT5G67190 57.143 56 24 0 33 88 21 76 1.73e-16 74.3
MsG0680033852.01.T01 AT2G33710 49.367 79 35 1 28 101 65 143 1.85e-16 75.1
MsG0680033852.01.T01 AT1G78080 59.322 59 24 0 32 90 151 209 2.00e-16 76.6
MsG0680033852.01.T01 AT2G33710 49.367 79 35 1 28 101 65 143 2.14e-16 75.1
MsG0680033852.01.T01 AT1G19210 36.522 115 73 0 33 147 12 126 7.06e-16 72.8
MsG0680033852.01.T01 AT3G11020 56.061 66 29 0 27 92 72 137 7.80e-16 74.7
MsG0680033852.01.T01 AT4G28140 55.932 59 26 0 32 90 142 200 8.08e-16 74.3
MsG0680033852.01.T01 AT1G36060 61.404 57 22 0 32 88 142 198 8.50e-16 74.7
MsG0680033852.01.T01 AT3G57600 52.778 72 34 0 17 88 12 83 9.81e-16 73.9
MsG0680033852.01.T01 AT2G20880 39.450 109 61 1 32 140 186 289 1.21e-15 74.3
MsG0680033852.01.T01 AT4G27950 59.649 57 23 0 33 89 118 174 1.78e-15 73.9
MsG0680033852.01.T01 AT5G13330 54.688 64 27 1 29 92 37 98 2.09e-15 72.0
MsG0680033852.01.T01 AT3G15210 60.714 56 22 0 33 88 25 80 2.61e-15 72.0
MsG0680033852.01.T01 AT1G03800 52.941 68 29 1 21 88 44 108 3.57e-15 72.0
MsG0680033852.01.T01 AT5G61890 54.688 64 27 1 29 92 88 149 4.07e-15 72.0
MsG0680033852.01.T01 AT5G61600 60.656 61 21 2 29 88 86 144 6.36e-15 71.2
MsG0680033852.01.T01 AT5G64750 35.652 115 65 3 43 154 195 303 9.34e-15 72.0
MsG0680033852.01.T01 AT5G07580 49.367 79 37 2 27 104 106 182 1.10e-14 70.1
MsG0680033852.01.T01 AT1G71520 33.803 142 71 5 27 162 8 132 1.12e-14 68.6
MsG0680033852.01.T01 AT3G61630 48.101 79 35 1 33 111 105 177 1.13e-14 71.2
MsG0680033852.01.T01 AT5G44210 58.929 56 23 0 33 88 33 88 1.21e-14 69.7
MsG0680033852.01.T01 AT1G15360 58.929 56 23 0 33 88 7 62 1.31e-14 69.7
MsG0680033852.01.T01 AT1G15360 58.929 56 23 0 33 88 7 62 1.31e-14 69.7
MsG0680033852.01.T01 AT4G11140 57.143 56 24 0 33 88 87 142 1.42e-14 70.9
MsG0680033852.01.T01 AT1G22810 39.785 93 41 2 33 117 14 99 1.48e-14 68.2
MsG0680033852.01.T01 AT5G05410 57.627 59 25 0 33 91 79 137 1.51e-14 70.9
MsG0680033852.01.T01 AT1G75490 48.611 72 37 0 32 103 41 112 1.52e-14 69.7
MsG0680033852.01.T01 AT1G43160 37.405 131 70 3 33 163 61 179 1.71e-14 69.3
MsG0680033852.01.T01 AT5G47230 52.778 72 33 1 18 88 141 212 2.00e-14 70.5
MsG0680033852.01.T01 AT5G05410 57.627 59 25 0 33 91 79 137 2.02e-14 70.9
MsG0680033852.01.T01 AT5G51190 57.143 63 24 2 27 88 68 128 2.10e-14 69.3
MsG0680033852.01.T01 AT1G72360 44.737 76 42 0 13 88 54 129 3.42e-14 69.3
MsG0680033852.01.T01 AT1G72360 49.206 63 32 0 26 88 18 80 3.58e-14 68.6
MsG0680033852.01.T01 AT5G25390 55.357 56 25 0 33 88 7 62 5.00e-14 67.8
MsG0680033852.01.T01 AT5G43410 55.000 60 26 1 30 88 12 71 5.05e-14 66.6
MsG0680033852.01.T01 AT1G72360 49.206 63 32 0 26 88 69 131 9.43e-14 68.2
MsG0680033852.01.T01 AT4G31060 41.463 82 44 1 11 88 1 82 9.53e-14 67.0
MsG0680033852.01.T01 AT3G23230 51.613 62 29 1 33 93 20 81 1.06e-13 65.9
MsG0680033852.01.T01 AT5G53290 56.140 57 25 0 33 89 125 181 1.22e-13 68.9
MsG0680033852.01.T01 AT1G28370 57.143 56 24 0 33 88 20 75 1.36e-13 66.2
MsG0680033852.01.T01 AT5G18450 47.500 80 38 1 9 88 14 89 1.63e-13 68.2
MsG0680033852.01.T01 AT2G46310 55.357 56 25 0 33 88 99 154 1.67e-13 67.8
MsG0680033852.01.T01 AT1G28370 57.143 56 24 0 33 88 58 113 2.15e-13 66.2
MsG0680033852.01.T01 AT3G20310 53.226 62 29 0 27 88 21 82 2.77e-13 66.6
MsG0680033852.01.T01 AT4G23750 54.386 57 26 0 33 89 122 178 3.74e-13 67.4
MsG0680033852.01.T01 AT4G23750 54.386 57 26 0 33 89 122 178 3.74e-13 67.4
MsG0680033852.01.T01 AT5G25190 58.929 56 23 0 33 88 8 63 6.65e-13 64.7
MsG0680033852.01.T01 AT1G28360 55.000 60 27 0 33 92 12 71 7.09e-13 64.7
MsG0680033852.01.T01 AT4G17490 55.556 63 25 2 27 88 133 193 8.56e-13 65.9
MsG0680033852.01.T01 AT1G77640 45.556 90 43 1 33 116 43 132 1.03e-12 65.1
MsG0680033852.01.T01 AT2G40340 53.571 56 26 0 33 88 14 69 1.55e-12 65.1
MsG0680033852.01.T01 AT2G40340 53.571 56 26 0 33 88 14 69 1.55e-12 65.1
MsG0680033852.01.T01 AT2G40340 53.571 56 26 0 33 88 14 69 1.55e-12 65.1
MsG0680033852.01.T01 AT1G50640 57.143 56 24 0 33 88 28 83 1.99e-12 63.9
MsG0680033852.01.T01 AT5G19790 53.448 58 27 0 33 90 22 79 2.05e-12 64.3
MsG0680033852.01.T01 AT5G47220 56.140 57 24 1 33 88 117 173 2.37e-12 64.3
MsG0680033852.01.T01 AT2G40340 53.571 56 26 0 33 88 72 127 2.47e-12 64.7
MsG0680033852.01.T01 AT2G40340 53.571 56 26 0 33 88 72 127 2.78e-12 64.7
MsG0680033852.01.T01 AT2G40340 53.571 56 26 0 33 88 79 134 3.32e-12 64.7
MsG0680033852.01.T01 AT5G61590 59.701 67 24 2 23 88 99 163 7.49e-12 62.0
MsG0680033852.01.T01 AT1G12890 44.872 78 40 1 11 88 2 76 7.97e-12 62.4
MsG0680033852.01.T01 AT2G40220 64.912 57 20 0 33 89 55 111 8.91e-12 63.2
MsG0680033852.01.T01 AT4G17500 56.140 57 24 1 33 88 148 204 1.51e-11 62.4
MsG0680033852.01.T01 AT3G23240 50.000 58 28 1 33 89 82 139 2.02e-11 61.2
MsG0680033852.01.T01 AT5G25390 51.786 56 24 1 33 88 7 59 2.11e-11 60.8
MsG0680033852.01.T01 AT2G44840 54.386 57 25 1 33 88 92 148 2.16e-11 61.2
MsG0680033852.01.T01 AT5G07310 49.315 73 35 1 16 88 77 147 2.78e-11 61.2
MsG0680033852.01.T01 AT1G12980 55.357 56 25 0 33 88 57 112 4.50e-11 61.2
MsG0680033852.01.T01 AT1G24590 51.562 64 28 1 33 96 58 118 4.56e-11 61.2
MsG0680033852.01.T01 AT2G40350 48.214 56 29 0 33 88 74 129 6.36e-11 58.9
MsG0680033852.01.T01 AT2G40350 48.214 56 29 0 33 88 67 122 6.69e-11 58.5

Find 58 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAGAGGAACTTAGATAAA+TGG 0.259157 6:+74810032 MsG0680033852.01.T01:CDS
CAAATCCTAGTCTTCTTATT+CGG 0.304564 6:-74810073 None:intergenic
AGCAGGGAGGAAGAAGTTTA+AGG 0.309502 6:+74809979 MsG0680033852.01.T01:CDS
GCCAGAGTTGTGGAGGAATA+TGG 0.338237 6:+74810408 MsG0680033852.01.T01:CDS
TTAAACTTCTTCCTCCCTGC+TGG 0.404819 6:-74809977 None:intergenic
CGAATAAGAAGACTAGGATT+TGG 0.406523 6:+74810074 MsG0680033852.01.T01:CDS
GCCTCAGCGGTGGCAGGAAT+AGG 0.415517 6:-74810208 None:intergenic
GGCAGCTGCAGAAGCTGCAG+AGG 0.416047 6:+74810246 MsG0680033852.01.T01:CDS
GAAGAGGAACTTAGATAAAT+GGG 0.423648 6:+74810033 MsG0680033852.01.T01:CDS
GTGTGCACGGGCAGCCATCT+CGG 0.428196 6:-74810116 None:intergenic
CGTTGCAGCAATTGCATTGA+GGG 0.436008 6:+74810141 MsG0680033852.01.T01:CDS
CTGTCTCAACTTTGCAGACT+CGG 0.436160 6:+74810174 MsG0680033852.01.T01:CDS
TTAGTCATTAAAGTCTTGTC+TGG 0.441603 6:-74810277 None:intergenic
AATGTCCCCTACACATAGTA+TGG 0.442156 6:+74810435 MsG0680033852.01.T01:CDS
ATATGTTTACAAGTAACAAC+GGG 0.454775 6:+74809921 None:intergenic
TTGCTGCAACGTCGTGTGCA+CGG 0.466937 6:-74810129 None:intergenic
TGCTGCAACGTCGTGTGCAC+GGG 0.472831 6:-74810128 None:intergenic
TGTATAGAGGTGTGAGGAAG+AGG 0.474025 6:+74810017 MsG0680033852.01.T01:CDS
AGTACAAGACTTTCAATATG+AGG 0.490333 6:+74810480 MsG0680033852.01.T01:CDS
CATGCTCCATACTATGTGTA+GGG 0.491173 6:-74810441 None:intergenic
ACTCGCCACCCGGTGTATAG+AGG 0.496516 6:+74810004 MsG0680033852.01.T01:CDS
CTGAGGCAAAAGACATTCAA+AGG 0.499259 6:+74810224 MsG0680033852.01.T01:CDS
TGAAGTCGAAGAAGAAGAAG+AGG 0.500617 6:+74810372 MsG0680033852.01.T01:CDS
GCCATATTCCTCCACAACTC+TGG 0.506491 6:-74810409 None:intergenic
TAAATGGGTATGTGAAATGA+GGG 0.506863 6:+74810048 MsG0680033852.01.T01:CDS
AATATGAGGAGGTATCACTA+TGG 0.509514 6:+74810494 MsG0680033852.01.T01:CDS
ATAAATGGGTATGTGAAATG+AGG 0.510310 6:+74810047 MsG0680033852.01.T01:CDS
ACGTTGCAGCAATTGCATTG+AGG 0.536298 6:+74810140 MsG0680033852.01.T01:CDS
TCATGCTCCATACTATGTGT+AGG 0.541468 6:-74810442 None:intergenic
AAGAAGACTAGGATTTGGCT+AGG 0.549278 6:+74810079 MsG0680033852.01.T01:CDS
GTTTAAGGAGACTCGCCACC+CGG 0.558195 6:+74809994 MsG0680033852.01.T01:CDS
CGAGTCTGCAAAGTTGAGAC+AGG 0.558907 6:-74810173 None:intergenic
TTACAAGTAACAACGGGGAG+GGG 0.563550 6:+74809927 MsG0680033852.01.T01:CDS
TGAGGCAAAAGACATTCAAA+GGG 0.575611 6:+74810225 MsG0680033852.01.T01:CDS
TTCCTCACACCTCTATACAC+CGG 0.578151 6:-74810013 None:intergenic
TCCTCACACCTCTATACACC+GGG 0.580421 6:-74810012 None:intergenic
TCCTATTCCTGCCACCGCTG+AGG 0.581983 6:+74810207 MsG0680033852.01.T01:CDS
GGGAACCGAATAAGAAGACT+AGG 0.583565 6:+74810068 MsG0680033852.01.T01:CDS
TAATGACATTGACACGGTTG+TGG 0.584743 6:+74810297 MsG0680033852.01.T01:CDS
TTTACAAGTAACAACGGGGA+GGG 0.587349 6:+74809926 MsG0680033852.01.T01:CDS
CAAGTAACAACGGGGAGGGG+CGG 0.588787 6:+74809930 MsG0680033852.01.T01:CDS
TCAACTTTGCAGACTCGGTG+TGG 0.601701 6:+74810179 MsG0680033852.01.T01:CDS
TGTGGCTGTTGTCGTTGCAG+TGG 0.604136 6:+74810315 MsG0680033852.01.T01:CDS
ACTTTGCAGACTCGGTGTGG+AGG 0.609381 6:+74810182 MsG0680033852.01.T01:CDS
TGTTGAATATGCCAGAGTTG+TGG 0.615027 6:+74810398 MsG0680033852.01.T01:CDS
TGTCGTTGCAGTGGAAGAAG+AGG 0.624573 6:+74810324 MsG0680033852.01.T01:CDS
GATATGTTTACAAGTAACAA+CGG 0.629910 6:+74809920 None:intergenic
GTTGCAGCAATTGCATTGAG+GGG 0.634472 6:+74810142 MsG0680033852.01.T01:CDS
AGAAGACTAGGATTTGGCTA+GGG 0.635435 6:+74810080 MsG0680033852.01.T01:CDS
AATGACTAATGACATTGACA+CGG 0.658662 6:+74810291 MsG0680033852.01.T01:CDS
CAAAGTTGAGACAGGCGTAG+CGG 0.672645 6:-74810165 None:intergenic
ACAAGACTTTCAATATGAGG+AGG 0.676699 6:+74810483 MsG0680033852.01.T01:CDS
TGAATATGCCAGAGTTGTGG+AGG 0.686416 6:+74810401 MsG0680033852.01.T01:CDS
GTTTACAAGTAACAACGGGG+AGG 0.703815 6:+74809925 MsG0680033852.01.T01:CDS
ACCCGGTGTATAGAGGTGTG+AGG 0.705873 6:+74810011 MsG0680033852.01.T01:CDS
ATGCTCCATACTATGTGTAG+GGG 0.710393 6:-74810440 None:intergenic
TCACACCTCTATACACCGGG+TGG 0.726886 6:-74810009 None:intergenic
TATGTTTACAAGTAACAACG+GGG 0.831032 6:+74809922 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AATGACTAATGACATTGACA+CGG + Chr6:74810291-74810310 MsG0680033852.01.T01:CDS 30.0%
AGTACAAGACTTTCAATATG+AGG + Chr6:74810480-74810499 MsG0680033852.01.T01:CDS 30.0%
ATAAATGGGTATGTGAAATG+AGG + Chr6:74810047-74810066 MsG0680033852.01.T01:CDS 30.0%
GAAGAGGAACTTAGATAAAT+GGG + Chr6:74810033-74810052 MsG0680033852.01.T01:CDS 30.0%
TAAATGGGTATGTGAAATGA+GGG + Chr6:74810048-74810067 MsG0680033852.01.T01:CDS 30.0%
! CAAATCCTAGTCTTCTTATT+CGG - Chr6:74810076-74810095 None:intergenic 30.0%
! TTAGTCATTAAAGTCTTGTC+TGG - Chr6:74810280-74810299 None:intergenic 30.0%
ACAAGACTTTCAATATGAGG+AGG + Chr6:74810483-74810502 MsG0680033852.01.T01:CDS 35.0%
CGAATAAGAAGACTAGGATT+TGG + Chr6:74810074-74810093 MsG0680033852.01.T01:CDS 35.0%
GGAAGAGGAACTTAGATAAA+TGG + Chr6:74810032-74810051 MsG0680033852.01.T01:CDS 35.0%
TGAGGCAAAAGACATTCAAA+GGG + Chr6:74810225-74810244 MsG0680033852.01.T01:CDS 35.0%
!! AATATGAGGAGGTATCACTA+TGG + Chr6:74810494-74810513 MsG0680033852.01.T01:CDS 35.0%
AAGAAGACTAGGATTTGGCT+AGG + Chr6:74810079-74810098 MsG0680033852.01.T01:CDS 40.0%
AATGTCCCCTACACATAGTA+TGG + Chr6:74810435-74810454 MsG0680033852.01.T01:CDS 40.0%
AGAAGACTAGGATTTGGCTA+GGG + Chr6:74810080-74810099 MsG0680033852.01.T01:CDS 40.0%
ATGCTCCATACTATGTGTAG+GGG - Chr6:74810443-74810462 None:intergenic 40.0%
CATGCTCCATACTATGTGTA+GGG - Chr6:74810444-74810463 None:intergenic 40.0%
CTGAGGCAAAAGACATTCAA+AGG + Chr6:74810224-74810243 MsG0680033852.01.T01:CDS 40.0%
TAATGACATTGACACGGTTG+TGG + Chr6:74810297-74810316 MsG0680033852.01.T01:CDS 40.0%
TCATGCTCCATACTATGTGT+AGG - Chr6:74810445-74810464 None:intergenic 40.0%
TGAAGTCGAAGAAGAAGAAG+AGG + Chr6:74810372-74810391 MsG0680033852.01.T01:CDS 40.0%
TGTTGAATATGCCAGAGTTG+TGG + Chr6:74810398-74810417 MsG0680033852.01.T01:CDS 40.0%
TTTACAAGTAACAACGGGGA+GGG + Chr6:74809926-74809945 MsG0680033852.01.T01:CDS 40.0%
! TTGAATGTCTTTTGCCTCAG+CGG - Chr6:74810224-74810243 None:intergenic 40.0%
ACGTTGCAGCAATTGCATTG+AGG + Chr6:74810140-74810159 MsG0680033852.01.T01:CDS 45.0%
AGCAGGGAGGAAGAAGTTTA+AGG + Chr6:74809979-74809998 MsG0680033852.01.T01:CDS 45.0%
AGTTGCCCAAAAAAACCAGC+AGG + Chr6:74809962-74809981 MsG0680033852.01.T01:CDS 45.0%
CGTTGCAGCAATTGCATTGA+GGG + Chr6:74810141-74810160 MsG0680033852.01.T01:CDS 45.0%
CTGTCTCAACTTTGCAGACT+CGG + Chr6:74810174-74810193 MsG0680033852.01.T01:CDS 45.0%
GGGAACCGAATAAGAAGACT+AGG + Chr6:74810068-74810087 MsG0680033852.01.T01:CDS 45.0%
GTTGCAGCAATTGCATTGAG+GGG + Chr6:74810142-74810161 MsG0680033852.01.T01:CDS 45.0%
GTTGCCCAAAAAAACCAGCA+GGG + Chr6:74809963-74809982 MsG0680033852.01.T01:CDS 45.0%
GTTTACAAGTAACAACGGGG+AGG + Chr6:74809925-74809944 MsG0680033852.01.T01:CDS 45.0%
TGAATATGCCAGAGTTGTGG+AGG + Chr6:74810401-74810420 MsG0680033852.01.T01:CDS 45.0%
TTAAACTTCTTCCTCCCTGC+TGG - Chr6:74809980-74809999 None:intergenic 45.0%
TTACAAGTAACAACGGGGAG+GGG + Chr6:74809927-74809946 MsG0680033852.01.T01:CDS 45.0%
TTCCTCACACCTCTATACAC+CGG - Chr6:74810016-74810035 None:intergenic 45.0%
! TGTATAGAGGTGTGAGGAAG+AGG + Chr6:74810017-74810036 MsG0680033852.01.T01:CDS 45.0%
!!! TCCTCCCTGCTGGTTTTTTT+GGG - Chr6:74809970-74809989 None:intergenic 45.0%
!!! TGGTTTTTTTGGGCAACTCG+CGG - Chr6:74809960-74809979 None:intergenic 45.0%
!!! TTCCTCCCTGCTGGTTTTTT+TGG - Chr6:74809971-74809990 None:intergenic 45.0%
CAAAGTTGAGACAGGCGTAG+CGG - Chr6:74810168-74810187 None:intergenic 50.0%
CGAGTCTGCAAAGTTGAGAC+AGG - Chr6:74810176-74810195 None:intergenic 50.0%
GCCAGAGTTGTGGAGGAATA+TGG + Chr6:74810408-74810427 MsG0680033852.01.T01:CDS 50.0%
GCCATATTCCTCCACAACTC+TGG - Chr6:74810412-74810431 None:intergenic 50.0%
TCCTCACACCTCTATACACC+GGG - Chr6:74810015-74810034 None:intergenic 50.0%
TGTCGTTGCAGTGGAAGAAG+AGG + Chr6:74810324-74810343 MsG0680033852.01.T01:CDS 50.0%
! AATGTCTTTTGCCTCAGCGG+TGG - Chr6:74810221-74810240 None:intergenic 50.0%
! GACTTTTGCAACAGCCGAGA+TGG + Chr6:74810102-74810121 MsG0680033852.01.T01:CDS 50.0%
!! TCAACTTTGCAGACTCGGTG+TGG + Chr6:74810179-74810198 MsG0680033852.01.T01:CDS 50.0%
GCCCAAAAAAACCAGCAGGG+AGG + Chr6:74809966-74809985 MsG0680033852.01.T01:CDS 55.0%
GTTTAAGGAGACTCGCCACC+CGG + Chr6:74809994-74810013 MsG0680033852.01.T01:CDS 55.0%
TCACACCTCTATACACCGGG+TGG - Chr6:74810012-74810031 None:intergenic 55.0%
TGTGGCTGTTGTCGTTGCAG+TGG + Chr6:74810315-74810334 MsG0680033852.01.T01:CDS 55.0%
TTGCTGCAACGTCGTGTGCA+CGG - Chr6:74810132-74810151 None:intergenic 55.0%
! ACCCGGTGTATAGAGGTGTG+AGG + Chr6:74810011-74810030 MsG0680033852.01.T01:CDS 55.0%
!! ACTTTGCAGACTCGGTGTGG+AGG + Chr6:74810182-74810201 MsG0680033852.01.T01:CDS 55.0%
ACTCGCCACCCGGTGTATAG+AGG + Chr6:74810004-74810023 MsG0680033852.01.T01:CDS 60.0%
CAAGTAACAACGGGGAGGGG+CGG + Chr6:74809930-74809949 MsG0680033852.01.T01:CDS 60.0%
TCCTATTCCTGCCACCGCTG+AGG + Chr6:74810207-74810226 MsG0680033852.01.T01:CDS 60.0%
TGCTGCAACGTCGTGTGCAC+GGG - Chr6:74810131-74810150 None:intergenic 60.0%
! TCTTTTGCCTCAGCGGTGGC+AGG - Chr6:74810217-74810236 None:intergenic 60.0%
GCCTCAGCGGTGGCAGGAAT+AGG - Chr6:74810211-74810230 None:intergenic 65.0%
GGCAGCTGCAGAAGCTGCAG+AGG + Chr6:74810246-74810265 MsG0680033852.01.T01:CDS 65.0%
GTGTGCACGGGCAGCCATCT+CGG - Chr6:74810119-74810138 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 74809923 74810525 74809923 ID=MsG0680033852.01;Name=MsG0680033852.01
Chr6 mRNA 74809923 74810525 74809923 ID=MsG0680033852.01.T01;Parent=MsG0680033852.01;Name=MsG0680033852.01.T01;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|1|1|0|200
Chr6 exon 74809923 74810525 74809923 ID=MsG0680033852.01.T01:exon:5313;Parent=MsG0680033852.01.T01
Chr6 CDS 74809923 74810525 74809923 ID=MsG0680033852.01.T01:cds;Parent=MsG0680033852.01.T01
Gene Sequence

>MsG0680033852.01.T01

ATGTTTACAAGTAACAACGGGGAGGGGCGGTTAGCCGCGAGTTGCCCAAAAAAACCAGCAGGGAGGAAGAAGTTTAAGGAGACTCGCCACCCGGTGTATAGAGGTGTGAGGAAGAGGAACTTAGATAAATGGGTATGTGAAATGAGGGAACCGAATAAGAAGACTAGGATTTGGCTAGGGACTTTTGCAACAGCCGAGATGGCTGCCCGTGCACACGACGTTGCAGCAATTGCATTGAGGGGCCGCTACGCCTGTCTCAACTTTGCAGACTCGGTGTGGAGGCTTCCTATTCCTGCCACCGCTGAGGCAAAAGACATTCAAAGGGCAGCTGCAGAAGCTGCAGAGGCTTTCAGACCAGACAAGACTTTAATGACTAATGACATTGACACGGTTGTGGCTGTTGTCGTTGCAGTGGAAGAAGAGGAAGAACTGTTGAATATGTTTTGTGTTGAAGTCGAAGAAGAAGAAGAGGAAGTGTTGAATATGCCAGAGTTGTGGAGGAATATGGCACTAATGTCCCCTACACATAGTATGGAGCATGAGTATGAAGATTTTGAAGTACAAGACTTTCAATATGAGGAGGTATCACTATGGAACTTCTAA

Protein sequence

>MsG0680033852.01.T01

MFTSNNGEGRLAASCPKKPAGRKKFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFATAEMAARAHDVAAIALRGRYACLNFADSVWRLPIPATAEAKDIQRAAAEAAEAFRPDKTLMTNDIDTVVAVVVAVEEEEELLNMFCVEVEEEEEEVLNMPELWRNMALMSPTHSMEHEYEDFEVQDFQYEEVSLWNF*