Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480019812.01.T02 | XP_003605778.1 | 96.875 | 64 | 2 | 0 | 1 | 64 | 55 | 118 | 3.00E-39 | 135 |
MsG0480019812.01.T01 | XP_003605778.1 | 94.017 | 117 | 6 | 1 | 3 | 118 | 2 | 118 | 2.85E-76 | 231 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480019812.01.T01 | B7FMD2 | 94.017 | 117 | 6 | 1 | 3 | 118 | 2 | 118 | 1.36e-76 | 231 |
MsG0480019812.01.T02 | B7FMD2 | 96.875 | 64 | 2 | 0 | 1 | 64 | 55 | 118 | 1.43e-39 | 135 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080049069.01 | MsG0480019812.01 | 0.807267 | 5.495422e-50 | 3.047358e-47 |
MsG0080049070.01 | MsG0480019812.01 | 0.885245 | 9.601173e-72 | 6.541139e-68 |
MsG0180000040.01 | MsG0480019812.01 | 0.835588 | 1.538029e-56 | 1.889158e-53 |
MsG0180000489.01 | MsG0480019812.01 | 0.804068 | 2.579598e-49 | 1.317528e-46 |
MsG0180000833.01 | MsG0480019812.01 | 0.810635 | 1.044953e-50 | 6.331975e-48 |
MsG0180000834.01 | MsG0480019812.01 | 0.810890 | 9.204820e-51 | 5.616172e-48 |
MsG0180000942.01 | MsG0480019812.01 | 0.809127 | 2.205807e-50 | 1.284440e-47 |
MsG0180000976.01 | MsG0480019812.01 | 0.824165 | 9.359346e-54 | 8.225750e-51 |
MsG0180001548.01 | MsG0480019812.01 | 0.931100 | 6.212895e-94 | 3.843918e-89 |
MsG0180002700.01 | MsG0480019812.01 | 0.827315 | 1.674081e-54 | 1.610530e-51 |
MsG0180003196.01 | MsG0480019812.01 | 0.897475 | 1.356735e-76 | 1.535272e-72 |
MsG0180003547.01 | MsG0480019812.01 | 0.806194 | 9.261002e-50 | 4.995592e-47 |
MsG0180003600.01 | MsG0480019812.01 | -0.808543 | 2.940856e-50 | 1.686141e-47 |
MsG0180003637.01 | MsG0480019812.01 | -0.843467 | 1.376478e-58 | 2.155600e-55 |
MsG0180004121.01 | MsG0480019812.01 | -0.843091 | 1.734318e-58 | 2.683595e-55 |
MsG0180004714.01 | MsG0480019812.01 | 0.855438 | 6.309453e-62 | 1.456710e-58 |
MsG0180004792.01 | MsG0480019812.01 | 0.922638 | 7.578861e-89 | 2.899121e-84 |
MsG0180005005.01 | MsG0480019812.01 | 0.809989 | 1.440395e-50 | 8.581421e-48 |
MsG0180005184.01 | MsG0480019812.01 | 0.810490 | 1.123147e-50 | 6.779506e-48 |
MsG0180005339.01 | MsG0480019812.01 | 0.824807 | 6.607645e-54 | 5.915865e-51 |
MsG0180005636.01 | MsG0480019812.01 | -0.826066 | 3.326588e-54 | 3.086782e-51 |
MsG0180005666.01 | MsG0480019812.01 | 0.819709 | 1.006992e-52 | 7.808141e-50 |
MsG0180005822.01 | MsG0480019812.01 | 0.820804 | 5.651832e-53 | 4.517858e-50 |
MsG0180005898.01 | MsG0480019812.01 | 0.849332 | 3.461771e-60 | 6.540748e-57 |
MsG0180006027.01 | MsG0480019812.01 | -0.823900 | 1.079639e-53 | 9.418649e-51 |
MsG0180006028.01 | MsG0480019812.01 | 0.921451 | 3.516216e-88 | 1.259508e-83 |
MsG0180006217.01 | MsG0480019812.01 | 0.871105 | 8.807480e-67 | 3.509855e-63 |
MsG0180006253.01 | MsG0480019812.01 | -0.828729 | 7.647800e-55 | 7.665406e-52 |
MsG0280010728.01 | MsG0480019812.01 | 0.845524 | 3.849034e-59 | 6.432237e-56 |
MsG0280011110.01 | MsG0480019812.01 | -0.802932 | 4.437235e-49 | 2.201063e-46 |
MsG0280011180.01 | MsG0480019812.01 | 0.821800 | 3.330381e-53 | 2.737304e-50 |
MsG0280011218.01 | MsG0480019812.01 | 0.871261 | 7.818932e-67 | 3.133914e-63 |
MsG0280011271.01 | MsG0480019812.01 | -0.828342 | 9.483063e-55 | 9.398956e-52 |
MsG0280011362.01 | MsG0480019812.01 | 0.838357 | 3.017055e-57 | 4.030975e-54 |
MsG0380011693.01 | MsG0480019812.01 | 0.802263 | 6.095324e-49 | 2.972532e-46 |
MsG0380012868.01 | MsG0480019812.01 | 0.878628 | 2.408763e-69 | 1.266909e-65 |
MsG0380014678.01 | MsG0480019812.01 | 0.811644 | 6.314452e-51 | 3.929755e-48 |
MsG0480019644.01 | MsG0480019812.01 | 0.842665 | 2.250724e-58 | 3.436659e-55 |
MsG0480019812.01 | MsG0480020448.01 | -0.833826 | 4.265555e-56 | 4.970282e-53 |
MsG0480019812.01 | MsG0480020473.01 | 0.880384 | 5.740774e-70 | 3.227910e-66 |
MsG0480019812.01 | MsG0480020596.01 | 0.908483 | 1.627962e-81 | 3.026591e-77 |
MsG0480019812.01 | MsG0480020797.01 | -0.824805 | 6.613647e-54 | 5.921021e-51 |
MsG0480019812.01 | MsG0480021038.01 | 0.898453 | 5.228316e-77 | 6.183849e-73 |
MsG0480019812.01 | MsG0480021124.01 | 0.849917 | 2.375956e-60 | 4.575790e-57 |
MsG0480019812.01 | MsG0480021213.01 | 0.917964 | 2.792769e-86 | 8.290111e-82 |
MsG0480019812.01 | MsG0480021652.01 | -0.803727 | 3.036281e-49 | 1.537183e-46 |
MsG0480019812.01 | MsG0480021967.01 | 0.845015 | 5.284907e-59 | 8.688857e-56 |
MsG0480019812.01 | MsG0480022113.01 | 0.893926 | 3.985245e-75 | 3.877877e-71 |
MsG0480019812.01 | MsG0480022154.01 | 0.879823 | 9.098022e-70 | 5.006423e-66 |
MsG0480019812.01 | MsG0480022162.01 | 0.874121 | 8.649553e-68 | 3.847068e-64 |
MsG0480019812.01 | MsG0480022240.01 | 0.868962 | 4.421232e-66 | 1.630108e-62 |
MsG0480019812.01 | MsG0480022244.01 | 0.806778 | 6.971672e-50 | 3.817138e-47 |
MsG0480019812.01 | MsG0480023169.01 | 0.814502 | 1.490985e-51 | 1.002243e-48 |
MsG0480019812.01 | MsG0480023326.01 | 0.822961 | 1.789815e-53 | 1.520495e-50 |
MsG0480019812.01 | MsG0480023406.01 | 0.829559 | 4.810552e-55 | 4.940643e-52 |
MsG0480019812.01 | MsG0480023454.01 | -0.843838 | 1.095220e-58 | 1.735302e-55 |
MsG0480019812.01 | MsG0480023466.01 | 0.883706 | 3.576706e-71 | 2.293130e-67 |
MsG0480019812.01 | MsG0480023987.01 | -0.810220 | 1.284296e-50 | 7.696952e-48 |
MsG0480019812.01 | MsG0580024193.01 | -0.813461 | 2.529309e-51 | 1.652911e-48 |
MsG0480019812.01 | MsG0580024598.01 | 0.820960 | 5.203584e-53 | 4.177928e-50 |
MsG0480019812.01 | MsG0580024872.01 | 0.830469 | 2.886458e-55 | 3.043613e-52 |
MsG0480019812.01 | MsG0580025558.01 | -0.821664 | 3.579299e-53 | 2.930539e-50 |
MsG0480019812.01 | MsG0580025564.01 | 0.804938 | 1.698712e-49 | 8.872988e-47 |
MsG0480019812.01 | MsG0580025565.01 | 0.844303 | 8.217309e-59 | 1.320994e-55 |
MsG0480019812.01 | MsG0580027183.01 | 0.866734 | 2.295938e-65 | 7.820202e-62 |
MsG0480019812.01 | MsG0580027189.01 | 0.847119 | 1.415006e-59 | 2.489667e-56 |
MsG0480019812.01 | MsG0580027899.01 | 0.812359 | 4.411668e-51 | 2.799164e-48 |
MsG0480019812.01 | MsG0580028495.01 | 0.810312 | 1.227263e-50 | 7.372957e-48 |
MsG0480019812.01 | MsG0580029237.01 | 0.815911 | 7.253041e-52 | 5.065529e-49 |
MsG0480019812.01 | MsG0580029325.01 | 0.810041 | 1.404016e-50 | 8.375874e-48 |
MsG0480019812.01 | MsG0580029511.01 | 0.827156 | 1.827591e-54 | 1.749890e-51 |
MsG0480019812.01 | MsG0580029751.01 | 0.833900 | 4.088495e-56 | 4.774608e-53 |
MsG0480019812.01 | MsG0580030063.01 | 0.811289 | 7.542683e-51 | 4.650423e-48 |
MsG0480019812.01 | MsG0680031826.01 | 0.827952 | 1.177233e-54 | 1.153704e-51 |
MsG0480019812.01 | MsG0680032416.01 | 0.824374 | 8.357595e-54 | 7.388879e-51 |
MsG0480019812.01 | MsG0680032850.01 | 0.868600 | 5.787043e-66 | 2.105805e-62 |
MsG0480019812.01 | MsG0680033852.01 | 0.846224 | 2.484093e-59 | 4.245705e-56 |
MsG0480019812.01 | MsG0680033879.01 | 0.811730 | 6.048903e-51 | 3.773387e-48 |
MsG0480019812.01 | MsG0680033884.01 | 0.840263 | 9.660416e-58 | 1.368611e-54 |
MsG0480019812.01 | MsG0680034238.01 | -0.824382 | 8.318266e-54 | 7.355945e-51 |
MsG0480019812.01 | MsG0680034759.01 | -0.815014 | 1.148414e-51 | 7.826627e-49 |
MsG0480019812.01 | MsG0680035344.01 | -0.839124 | 1.911884e-57 | 2.614700e-54 |
MsG0480019812.01 | MsG0680035664.01 | 0.826222 | 3.053433e-54 | 2.846021e-51 |
MsG0480019812.01 | MsG0680035665.01 | 0.851912 | 6.516011e-61 | 1.338755e-57 |
MsG0480019812.01 | MsG0780035965.01 | 0.851862 | 6.728853e-61 | 1.380310e-57 |
MsG0480019812.01 | MsG0780035976.01 | -0.830139 | 3.475311e-55 | 3.630024e-52 |
MsG0480019812.01 | MsG0780036008.01 | 0.874086 | 8.891249e-68 | 3.949244e-64 |
MsG0480019812.01 | MsG0780037052.01 | -0.847779 | 9.320308e-60 | 1.674591e-56 |
MsG0480019812.01 | MsG0780037363.01 | 0.820475 | 6.727734e-53 | 5.328732e-50 |
MsG0480019812.01 | MsG0780037507.01 | 0.833748 | 4.462840e-56 | 5.187207e-53 |
MsG0480019812.01 | MsG0780040105.01 | 0.834356 | 3.143037e-56 | 3.720841e-53 |
MsG0480019812.01 | MsG0780040236.01 | 0.801377 | 9.265756e-49 | 4.418191e-46 |
MsG0480019812.01 | MsG0780040550.01 | 0.817809 | 2.720398e-52 | 2.001451e-49 |
MsG0480019812.01 | MsG0780040560.01 | -0.813807 | 2.123370e-51 | 1.400614e-48 |
MsG0480019812.01 | MsG0780040670.01 | -0.825633 | 4.214050e-54 | 3.862473e-51 |
MsG0480019812.01 | MsG0780040684.01 | 0.869401 | 3.183639e-66 | 1.193366e-62 |
MsG0480019812.01 | MsG0780040965.01 | 0.859920 | 2.961908e-63 | 7.953748e-60 |
MsG0480019812.01 | MsG0780041331.01 | 0.887086 | 1.942287e-72 | 1.424202e-68 |
MsG0480019812.01 | MsG0780041361.01 | 0.870602 | 1.289337e-66 | 5.044760e-63 |
MsG0480019812.01 | MsG0780041442.01 | 0.801276 | 9.719213e-49 | 4.622681e-46 |
MsG0480019812.01 | MsG0880041847.01 | 0.869553 | 2.840977e-66 | 1.070630e-62 |
MsG0480019812.01 | MsG0880042019.01 | 0.818426 | 1.972383e-52 | 1.476020e-49 |
MsG0480019812.01 | MsG0880042086.01 | 0.840136 | 1.042851e-57 | 1.471724e-54 |
MsG0480019812.01 | MsG0880042415.01 | 0.892460 | 1.555979e-74 | 1.423952e-70 |
MsG0480019812.01 | MsG0880042512.01 | 0.857316 | 1.774145e-62 | 4.360540e-59 |
MsG0480019812.01 | MsG0880042849.01 | -0.825826 | 3.792039e-54 | 3.494938e-51 |
MsG0480019812.01 | MsG0880043024.01 | 0.818280 | 2.128634e-52 | 1.586354e-49 |
MsG0480019812.01 | MsG0880043056.01 | 0.858212 | 9.616203e-63 | 2.435533e-59 |
MsG0480019812.01 | MsG0880043092.01 | 0.820189 | 7.824544e-53 | 6.148723e-50 |
MsG0480019812.01 | MsG0880043107.01 | 0.822207 | 2.679519e-53 | 2.228027e-50 |
MsG0480019812.01 | MsG0880043476.01 | 0.862260 | 5.749215e-64 | 1.673270e-60 |
MsG0480019812.01 | MsG0880044834.01 | 0.817246 | 3.642333e-52 | 2.638570e-49 |
MsG0480019812.01 | MsG0880045312.01 | 0.840755 | 7.184164e-58 | 1.033439e-54 |
MsG0480019812.01 | MsG0880045646.01 | -0.827853 | 1.243544e-54 | 1.215158e-51 |
MsG0480019812.01 | MsG0880045703.01 | 0.807635 | 4.591294e-50 | 2.570372e-47 |
MsG0480019812.01 | MsG0880046124.01 | 0.813066 | 3.088802e-51 | 1.996749e-48 |
MsG0480019812.01 | MsG0880046324.01 | 0.801030 | 1.091061e-48 | 5.157569e-46 |
MsG0480019812.01 | MsG0880046408.01 | 0.819125 | 1.368778e-52 | 1.044193e-49 |
MsG0480019812.01 | MsG0880046434.01 | -0.800581 | 1.347739e-48 | 6.298314e-46 |
MsG0480019812.01 | MsG0880046946.01 | -0.821003 | 5.085184e-53 | 4.087906e-50 |
MsG0480019812.01 | MsG0880047123.01 | -0.802128 | 6.498676e-49 | 3.158266e-46 |
MsG0480019812.01 | MsG0880047312.01 | -0.825263 | 5.156769e-54 | 4.677059e-51 |
MsG0480019812.01 | MsG0880047326.01 | 0.804393 | 2.206876e-49 | 1.136535e-46 |
MsG0380015456.01 | MsG0480019812.01 | 0.839031 | 2.020419e-57 | 2.755455e-54 |
MsG0380015557.01 | MsG0480019812.01 | -0.810596 | 1.065418e-50 | 6.449376e-48 |
MsG0380016057.01 | MsG0480019812.01 | 0.811884 | 5.599434e-51 | 3.507117e-48 |
MsG0380016172.01 | MsG0480019812.01 | 0.807469 | 4.978266e-50 | 2.775180e-47 |
MsG0380017162.01 | MsG0480019812.01 | 0.823246 | 1.535428e-53 | 1.314873e-50 |
MsG0380017411.01 | MsG0480019812.01 | -0.832653 | 8.359533e-56 | 9.404087e-53 |
MsG0380017427.01 | MsG0480019812.01 | 0.902514 | 8.966307e-79 | 1.273912e-74 |
MsG0380017620.01 | MsG0480019812.01 | 0.812738 | 3.646008e-51 | 2.336594e-48 |
MsG0380017666.01 | MsG0480019812.01 | -0.805626 | 1.219279e-49 | 6.481876e-47 |
MsG0380017793.01 | MsG0480019812.01 | 0.817570 | 3.078602e-52 | 2.250104e-49 |
MsG0480018337.01 | MsG0480019812.01 | 0.910168 | 2.532843e-82 | 5.107364e-78 |
MsG0480018338.01 | MsG0480019812.01 | 0.879162 | 1.560503e-69 | 8.372183e-66 |
MsG0280007280.01 | MsG0480019812.01 | -0.838158 | 3.394891e-57 | 4.507969e-54 |
MsG0280007406.01 | MsG0480019812.01 | 0.901566 | 2.353466e-78 | 3.198112e-74 |
MsG0280007598.01 | MsG0480019812.01 | -0.846123 | 2.645746e-59 | 4.507354e-56 |
MsG0280007851.01 | MsG0480019812.01 | -0.837415 | 5.269884e-57 | 6.840205e-54 |
MsG0280007852.01 | MsG0480019812.01 | 0.811977 | 5.343164e-51 | 3.355144e-48 |
MsG0280007853.01 | MsG0480019812.01 | 0.832924 | 7.161559e-56 | 8.121102e-53 |
MsG0280008072.01 | MsG0480019812.01 | 0.805279 | 1.441497e-49 | 7.594881e-47 |
MsG0280008223.01 | MsG0480019812.01 | 0.802835 | 4.645170e-49 | 2.298733e-46 |
MsG0280008452.01 | MsG0480019812.01 | -0.811597 | 6.464382e-51 | 4.018133e-48 |
MsG0280009445.01 | MsG0480019812.01 | 0.826959 | 2.037417e-54 | 1.939650e-51 |
MsG0280009675.01 | MsG0480019812.01 | 0.884493 | 1.829349e-71 | 1.209263e-67 |
MsG0280010468.01 | MsG0480019812.01 | -0.812036 | 5.187699e-51 | 3.262591e-48 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480019812.01.T02 | MTR_4g039540 | 96.875 | 64 | 2 | 0 | 1 | 64 | 55 | 118 | 3.63e-43 | 135 |
MsG0480019812.01.T01 | MTR_4g039540 | 94.017 | 117 | 6 | 1 | 3 | 118 | 2 | 118 | 3.45e-80 | 231 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480019812.01.T02 | AT3G52070 | 74.359 | 39 | 9 | 1 | 18 | 55 | 66 | 104 | 2.29e-13 | 59.7 |
MsG0480019812.01.T02 | AT3G52070 | 74.359 | 39 | 9 | 1 | 18 | 55 | 66 | 104 | 3.69e-13 | 59.3 |
MsG0480019812.01.T01 | AT3G52070 | 43.333 | 90 | 39 | 3 | 32 | 109 | 15 | 104 | 2.87e-13 | 61.6 |
MsG0480019812.01.T01 | AT3G52070 | 43.333 | 90 | 39 | 3 | 32 | 109 | 15 | 104 | 4.19e-13 | 61.2 |
Find 25 sgRNAs with CRISPR-Local
Find 28 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCACTCTTGGTATAGAATT+AGG | 0.267818 | 4:-27745246 | MsG0480019812.01.T01:CDS |
CTTCTACCTTGGCAAGATAA+TGG | 0.344639 | 4:+27745211 | None:intergenic |
GTCCACAACAAAAGGGTGAT+TGG | 0.404912 | 4:-27745042 | MsG0480019812.01.T01:CDS |
GTATAGAATTAGGACCCCTT+TGG | 0.412469 | 4:-27745236 | MsG0480019812.01.T01:CDS |
AATAAGCACATACTAACTTC+TGG | 0.421785 | 4:+27744969 | None:intergenic |
GAATTTAAGTCCACAACAAA+AGG | 0.428735 | 4:-27745050 | MsG0480019812.01.T01:CDS |
AACTACCATACATGTACATT+AGG | 0.446681 | 4:+27744929 | None:intergenic |
ATAAGCACATACTAACTTCT+GGG | 0.459372 | 4:+27744970 | None:intergenic |
AAATTCTTCATCTCTTGTTG+TGG | 0.464351 | 4:+27745067 | None:intergenic |
TAGTATGTGCTTATTGTGCT+TGG | 0.469587 | 4:-27744961 | MsG0480019812.01.T01:CDS |
CACTCACCATTAGCCACTCT+TGG | 0.472156 | 4:-27745258 | MsG0480019812.01.T01:CDS |
AAGAAAGACATAGGAGGAAG+AGG | 0.481981 | 4:-27745157 | MsG0480019812.01.T01:CDS |
AGATGCATGGTCTTCTACCT+TGG | 0.492293 | 4:+27745200 | None:intergenic |
TCTATACCAAGAGTGGCTAA+TGG | 0.502607 | 4:+27745252 | None:intergenic |
CTATGCCTAATGTACATGTA+TGG | 0.513001 | 4:-27744934 | MsG0480019812.01.T01:CDS |
GGCAAGATAATGGAACCAAA+GGG | 0.513637 | 4:+27745221 | None:intergenic |
TTGAGAAGCTAATTGGGAAG+AGG | 0.524139 | 4:-27745090 | MsG0480019812.01.T01:CDS |
TTGGTTCCATTATCTTGCCA+AGG | 0.539176 | 4:-27745217 | MsG0480019812.01.T01:CDS |
CATGAAGAAAAGAAAGACAT+AGG | 0.556728 | 4:-27745166 | MsG0480019812.01.T01:CDS |
TGGCAAGATAATGGAACCAA+AGG | 0.571857 | 4:+27745220 | None:intergenic |
TCCTAATTCTATACCAAGAG+TGG | 0.590163 | 4:+27745245 | None:intergenic |
AATTTAAGTCCACAACAAAA+GGG | 0.599106 | 4:-27745049 | MsG0480019812.01.T01:CDS |
TGATTGGAGTTAGAGATGCA+TGG | 0.614307 | 4:+27745187 | None:intergenic |
GAAGAAAAGAAAGACATAGG+AGG | 0.619275 | 4:-27745163 | MsG0480019812.01.T01:CDS |
GCAAGATAATGGAACCAAAG+GGG | 0.711481 | 4:+27745222 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AATTTAAGTCCACAACAAAA+GGG | - | Chr4:27745147-27745166 | MsG0480019812.01.T01:CDS | 25.0% |
!!! | AATGATTTTGAGAAGCTAAT+TGG | - | Chr4:27745099-27745118 | MsG0480019812.01.T01:CDS | 25.0% |
!!! | ATGATTTTGAGAAGCTAATT+GGG | - | Chr4:27745100-27745119 | MsG0480019812.01.T01:CDS | 25.0% |
AAATTCTTCATCTCTTGTTG+TGG | + | Chr4:27745132-27745151 | None:intergenic | 30.0% | |
AATAAGCACATACTAACTTC+TGG | + | Chr4:27745230-27745249 | None:intergenic | 30.0% | |
ATAAGCACATACTAACTTCT+GGG | + | Chr4:27745229-27745248 | None:intergenic | 30.0% | |
CATGAAGAAAAGAAAGACAT+AGG | - | Chr4:27745030-27745049 | MsG0480019812.01.T01:CDS | 30.0% | |
GAATTTAAGTCCACAACAAA+AGG | - | Chr4:27745146-27745165 | MsG0480019812.01.T01:CDS | 30.0% | |
! | GTCTTTCTTTTCTTCATGAT+TGG | + | Chr4:27745028-27745047 | None:intergenic | 30.0% |
CTATGCCTAATGTACATGTA+TGG | - | Chr4:27745262-27745281 | MsG0480019812.01.T01:CDS | 35.0% | |
GAAGAAAAGAAAGACATAGG+AGG | - | Chr4:27745033-27745052 | MsG0480019812.01.T01:CDS | 35.0% | |
TAGTATGTGCTTATTGTGCT+TGG | - | Chr4:27745235-27745254 | MsG0480019812.01.T01:CDS | 35.0% | |
TCCTAATTCTATACCAAGAG+TGG | + | Chr4:27744954-27744973 | None:intergenic | 35.0% | |
AAGAAAGACATAGGAGGAAG+AGG | - | Chr4:27745039-27745058 | MsG0480019812.01.T01:CDS | 40.0% | |
CTTCTACCTTGGCAAGATAA+TGG | + | Chr4:27744988-27745007 | None:intergenic | 40.0% | |
GCCACTCTTGGTATAGAATT+AGG | - | Chr4:27744950-27744969 | MsG0480019812.01.T01:CDS | 40.0% | |
GTATAGAATTAGGACCCCTT+TGG | - | Chr4:27744960-27744979 | MsG0480019812.01.T01:CDS | 40.0% | |
TCTATACCAAGAGTGGCTAA+TGG | + | Chr4:27744947-27744966 | None:intergenic | 40.0% | |
TGATTGGAGTTAGAGATGCA+TGG | + | Chr4:27745012-27745031 | None:intergenic | 40.0% | |
TTGAGAAGCTAATTGGGAAG+AGG | - | Chr4:27745106-27745125 | MsG0480019812.01.T01:CDS | 40.0% | |
TTGGTTCCATTATCTTGCCA+AGG | - | Chr4:27744979-27744998 | MsG0480019812.01.T01:CDS | 40.0% | |
! | TTCCAATCACCCTTTTGTTG+TGG | + | Chr4:27745159-27745178 | None:intergenic | 40.0% |
!! | GCAAGATAATGGAACCAAAG+GGG | + | Chr4:27744977-27744996 | None:intergenic | 40.0% |
!! | GGCAAGATAATGGAACCAAA+GGG | + | Chr4:27744978-27744997 | None:intergenic | 40.0% |
!! | TGGCAAGATAATGGAACCAA+AGG | + | Chr4:27744979-27744998 | None:intergenic | 40.0% |
AGATGCATGGTCTTCTACCT+TGG | + | Chr4:27744999-27745018 | None:intergenic | 45.0% | |
GTCCACAACAAAAGGGTGAT+TGG | - | Chr4:27745154-27745173 | MsG0480019812.01.T01:CDS | 45.0% | |
CACTCACCATTAGCCACTCT+TGG | - | Chr4:27744938-27744957 | MsG0480019812.01.T01:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr4 | gene | 27744931 | 27745287 | 27744931 | ID=MsG0480019812.01;Name=MsG0480019812.01 |
Chr4 | mRNA | 27744931 | 27745287 | 27744931 | ID=MsG0480019812.01.T01;Parent=MsG0480019812.01;Name=MsG0480019812.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|118 |
Chr4 | exon | 27744931 | 27745287 | 27744931 | ID=MsG0480019812.01.T01:exon:2451;Parent=MsG0480019812.01.T01 |
Chr4 | CDS | 27744931 | 27745287 | 27744931 | ID=MsG0480019812.01.T01:cds;Parent=MsG0480019812.01.T01 |
Chr4 | mRNA | 27744931 | 27745125 | 27744931 | ID=MsG0480019812.01.T02;Parent=MsG0480019812.01;Name=MsG0480019812.01.T02;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|64 |
Chr4 | exon | 27744931 | 27745125 | 27744931 | ID=MsG0480019812.01.T02:exon:2452;Parent=MsG0480019812.01.T02 |
Chr4 | CDS | 27744931 | 27745125 | 27744931 | ID=MsG0480019812.01.T02:cds;Parent=MsG0480019812.01.T02 |
Gene Sequence |
Protein sequence |