AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034232.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034232.01.T02 MTR_6g060170 95.652 69 3 0 1 69 30 98 2.54e-46 142
MsG0680034232.01.T02 MTR_1g076840 83.824 68 11 0 2 69 65 132 3.24e-40 128
MsG0680034232.01.T02 MTR_1g069370 63.235 68 25 0 2 69 32 99 7.65e-29 99.0
MsG0680034232.01.T02 MTR_7g099200 63.235 68 25 0 2 69 28 95 2.68e-28 97.8
MsG0680034232.01.T02 MTR_6g060000 97.727 44 1 0 9 52 18 61 1.57e-26 92.0
MsG0680034232.01.T02 MTR_6g060090 74.000 50 11 1 2 51 9 56 1.14e-20 77.0
MsG0680034232.01.T02 MTR_6g059920 53.846 65 30 0 2 66 61 125 7.10e-20 77.0
MsG0680034232.01.T02 MTR_6g060030 65.517 58 2 1 30 69 7 64 7.34e-18 70.1
MsG0680034232.01.T02 MTR_5g005820 51.562 64 31 0 2 65 30 93 1.66e-17 70.1
MsG0680034232.01.T01 MTR_6g060170 97.959 98 2 0 1 98 1 98 7.10e-69 201
MsG0680034232.01.T01 MTR_1g076840 83.505 97 16 0 2 98 36 132 3.21e-58 175
MsG0680034232.01.T01 MTR_7g099200 57.895 95 40 0 4 98 1 95 2.68e-38 124
MsG0680034232.01.T01 MTR_1g069370 57.732 97 41 0 2 98 3 99 2.71e-38 124
MsG0680034232.01.T01 MTR_6g059920 55.556 90 40 0 6 95 36 125 4.95e-31 106
MsG0680034232.01.T01 MTR_5g005820 52.809 89 42 0 6 94 5 93 3.45e-27 95.9
MsG0680034232.01.T01 MTR_6g060000 97.727 44 1 0 38 81 18 61 2.00e-26 92.8
MsG0680034232.01.T01 MTR_6g060090 76.000 50 10 1 31 80 9 56 5.42e-21 79.0
MsG0680034232.01.T01 MTR_6g060030 65.517 58 2 1 59 98 7 64 9.41e-18 70.9
MsG0680034232.01.T01 MTR_1g086000 40.260 77 46 0 3 79 42 118 4.06e-16 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034232.01.T02 AT4G10300 80.882 68 13 0 2 69 67 134 3.86e-38 123
MsG0680034232.01.T02 AT3G04300 58.824 68 28 0 2 69 24 91 2.39e-27 95.1
MsG0680034232.01.T02 AT4G28703 53.947 76 26 1 2 68 29 104 6.22e-23 84.0
MsG0680034232.01.T02 AT4G10280 47.887 71 34 1 2 69 69 139 2.99e-18 73.2
MsG0680034232.01.T02 AT4G10290 45.714 70 35 1 3 69 42 111 5.63e-14 61.6
MsG0680034232.01.T01 AT4G10300 80.851 94 18 0 5 98 41 134 3.96e-54 165
MsG0680034232.01.T01 AT3G04300 57.143 91 39 0 8 98 1 91 1.73e-36 119
MsG0680034232.01.T01 AT4G28703 51.546 97 38 1 10 97 8 104 1.27e-30 104
MsG0680034232.01.T01 AT4G10280 50.515 97 45 1 5 98 43 139 1.31e-27 98.2
MsG0680034232.01.T01 AT4G10290 45.361 97 50 1 5 98 15 111 3.61e-22 84.0
MsG0680034232.01.T01 AT2G32650 32.632 95 64 0 4 98 40 134 1.74e-15 67.4
MsG0680034232.01.T01 AT2G32650 32.632 95 64 0 4 98 40 134 1.74e-15 67.4
MsG0680034232.01.T01 AT2G32180 32.632 95 64 0 4 98 40 134 1.76e-15 67.4
MsG0680034232.01.T01 AT2G32180 32.632 95 64 0 4 98 40 134 1.76e-15 67.4

Find 24 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACACTATTTCATTCATTA+TGG 0.194745 6:-84093123 None:intergenic
GAGTAACGTGACAGAGAAAT+TGG 0.284911 6:+84089874 MsG0680034232.01.T01:CDS
GCAAATGAGTCAGTTGAATT+TGG 0.294818 6:+84092996 MsG0680034232.01.T01:CDS
TACACTATTTCATTCATTAT+GGG 0.311454 6:-84093122 None:intergenic
TAGAAGATAACATGTCTCTT+TGG 0.329835 6:-84092943 None:intergenic
ACTGACTCATTTGCTCCATT+TGG 0.332956 6:-84092987 None:intergenic
CTAAAGGGATGAGTTGTACT+TGG 0.367569 6:+84093042 MsG0680034232.01.T01:CDS
CAAGTACAACTCATCCCTTT+AGG 0.404328 6:-84093041 None:intergenic
GAGACATGTTATCTTCTAGA+AGG 0.416923 6:+84092948 MsG0680034232.01.T01:CDS
ACTTGGTTGTGTTTCCTAAA+GGG 0.436718 6:+84093027 MsG0680034232.01.T01:CDS
AACTCACTCAACTTGGTGTT+AGG 0.439185 6:+84089930 MsG0680034232.01.T01:CDS
AAAGTTAAGGTAACACCAAA+TGG 0.439787 6:+84092972 MsG0680034232.01.T01:CDS
TATGTCCATGGAAATTTGCT+TGG 0.448689 6:-84092915 None:intergenic
GACTTGGTTGTGTTTCCTAA+AGG 0.466612 6:+84093026 MsG0680034232.01.T01:CDS
TGAATTTGGTGCTGGTGACT+TGG 0.494244 6:+84093010 MsG0680034232.01.T01:CDS
TCTTCTAGAAGGAAAAGTTA+AGG 0.506672 6:+84092959 MsG0680034232.01.T01:CDS
GTCCATGGAAATTTGCTTGG+AGG 0.510666 6:-84092912 None:intergenic
AGTAACGTGACAGAGAAATT+GGG 0.542027 6:+84089875 MsG0680034232.01.T01:CDS
GTCCTCCAAGCAAATTTCCA+TGG 0.550598 6:+84092910 MsG0680034232.01.T01:CDS
CTCAACTTGGTGTTAGGCAA+TGG 0.558522 6:+84089936 MsG0680034232.01.T01:CDS
TAAAGGGATGAGTTGTACTT+GGG 0.567926 6:+84093043 MsG0680034232.01.T01:CDS
GAGTCAGTTGAATTTGGTGC+TGG 0.568923 6:+84093002 MsG0680034232.01.T01:CDS
CATAATGAATGAAATAGTGT+AGG 0.599479 6:+84093124 MsG0680034232.01.T01:three_prime_UTR
TCTTTGGAATCATATGTCCA+TGG 0.603728 6:-84092927 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATTTGTAAAATTTATTT+TGG + Chr6:84091026-84091045 MsG0680034232.01.T01:intron 10.0%
!!! TTTTTTTTATACAAATGTTT+TGG + Chr6:84090650-84090669 MsG0680034232.01.T01:intron 10.0%
!! ACAAATTGAAAAAAATAAGA+AGG - Chr6:84091692-84091711 None:intergenic 15.0%
!! ATTTCTATGTAATATAAGTA+AGG + Chr6:84091748-84091767 MsG0680034232.01.T01:intron 15.0%
!! TATAAACATTTATTTAACAC+TGG + Chr6:84090356-84090375 MsG0680034232.01.T01:intron 15.0%
!! TTACCTTTAATAAAAAATGT+TGG - Chr6:84092528-84092547 None:intergenic 15.0%
!!! AAAAAACAAAAAACACATTT+TGG + Chr6:84090809-84090828 MsG0680034232.01.T01:intron 15.0%
!!! GAAAAAATTGAACTTTTAAT+TGG - Chr6:84091589-84091608 None:intergenic 15.0%
!!! GATTTTTATCAATTTATGTT+TGG + Chr6:84091100-84091119 MsG0680034232.01.T01:intron 15.0%
!!! TTCTTATTTTTTTCAATTTG+TGG + Chr6:84091691-84091710 MsG0680034232.01.T01:intron 15.0%
!!! TTTTTTATTAAAGGTAAGTT+TGG + Chr6:84092531-84092550 MsG0680034232.01.T01:intron 15.0%
!! AAAACATACTAAAGAGTAAA+AGG - Chr6:84090102-84090121 None:intergenic 20.0%
!! AACAATTAATCATCTTGAAT+TGG + Chr6:84090578-84090597 MsG0680034232.01.T01:intron 20.0%
!! ACATAATTAAGTGTAACTAT+AGG + Chr6:84090255-84090274 MsG0680034232.01.T01:intron 20.0%
!! ATACAAATTCTTATCACTAT+AGG - Chr6:84091801-84091820 None:intergenic 20.0%
!! CTGAAAAAATGTTTATAAGT+GGG - Chr6:84090531-84090550 None:intergenic 20.0%
!! TACACTATTTCATTCATTAT+GGG - Chr6:84093125-84093144 None:intergenic 20.0%
!! TATCAACCAAATAAAATAGT+GGG - Chr6:84091950-84091969 None:intergenic 20.0%
!! TATTAGTGTAACAGAATATT+TGG - Chr6:84092352-84092371 None:intergenic 20.0%
!! TATTGAAATTTCATAGATTC+TGG + Chr6:84091818-84091837 MsG0680034232.01.T01:intron 20.0%
!! TGAAAAAATGTTTATAAGTG+GGG - Chr6:84090530-84090549 None:intergenic 20.0%
!! TTATCAACCAAATAAAATAG+TGG - Chr6:84091951-84091970 None:intergenic 20.0%
!!! GTGAAATAAGAATTTTAAAG+TGG + Chr6:84093174-84093193 MsG0680034232.01.T01:three_prime_UTR 20.0%
!!! GTTCTTTTTTTCCATTAATT+TGG - Chr6:84091844-84091863 None:intergenic 20.0%
!!! TAAAATTTCTTTTCTCTAAG+TGG + Chr6:84092856-84092875 MsG0680034232.01.T01:intron 20.0%
! AAATGAACCTCAAAAAAGTA+TGG - Chr6:84090894-84090913 None:intergenic 25.0%
! AAATGTTGAGATTGTTAGAT+TGG + Chr6:84090700-84090719 MsG0680034232.01.T01:intron 25.0%
! AATCTAACAATCTCAACATT+TGG - Chr6:84090701-84090720 None:intergenic 25.0%
! AATTCGTACTTTCAAAAGAA+GGG - Chr6:84091413-84091432 None:intergenic 25.0%
! CAAACTCAATTATACTCTAA+AGG - Chr6:84091215-84091234 None:intergenic 25.0%
! CATAATGAATGAAATAGTGT+AGG + Chr6:84093124-84093143 MsG0680034232.01.T01:three_prime_UTR 25.0%
! CCTGAAAAAATGTTTATAAG+TGG - Chr6:84090532-84090551 None:intergenic 25.0%
! CCTTTAATAAAAAATGTTGG+TGG - Chr6:84092525-84092544 None:intergenic 25.0%
! CTACACTATTTCATTCATTA+TGG - Chr6:84093126-84093145 None:intergenic 25.0%
! GTGCTTCATAATTTATAAGT+GGG - Chr6:84090195-84090214 None:intergenic 25.0%
! GTTTAGATATAAATGGTATG+TGG + Chr6:84090380-84090399 MsG0680034232.01.T01:intron 25.0%
! TCTTTCTCATATTGTATGTT+TGG + Chr6:84091441-84091460 MsG0680034232.01.T01:intron 25.0%
! TGCTTCATAATTTATAAGTG+GGG - Chr6:84090194-84090213 None:intergenic 25.0%
! TGTGCTTCATAATTTATAAG+TGG - Chr6:84090196-84090215 None:intergenic 25.0%
! TTAGAGTATAATTGAGTTTG+AGG + Chr6:84091215-84091234 MsG0680034232.01.T01:intron 25.0%
! TTCGTTAATCTTAGAATTTG+TGG + Chr6:84090121-84090140 MsG0680034232.01.T01:intron 25.0%
! TTGTTATCCATAATGATACA+TGG - Chr6:84092700-84092719 None:intergenic 25.0%
! TTTAGTCAAATTGATGTTGA+AGG - Chr6:84091566-84091585 None:intergenic 25.0%
!! AACAAACCCACTATTTTATT+TGG + Chr6:84091941-84091960 MsG0680034232.01.T01:intron 25.0%
!! CATTTTACCATGTATCATTA+TGG + Chr6:84092690-84092709 MsG0680034232.01.T01:intron 25.0%
!!! CCACCAACATTTTTTATTAA+AGG + Chr6:84092522-84092541 MsG0680034232.01.T01:intron 25.0%
!!! CCACTTATAAACATTTTTTC+AGG + Chr6:84090529-84090548 MsG0680034232.01.T01:intron 25.0%
!!! TTTTGAAAGTACGAATTGAT+TGG + Chr6:84091416-84091435 MsG0680034232.01.T01:intron 25.0%
AAAAATGTTTATAAGTGGGG+AGG - Chr6:84090527-84090546 None:intergenic 30.0%
AAAATGTTTATAAGTGGGGA+GGG - Chr6:84090526-84090545 None:intergenic 30.0%
AAAGTTAAGGTAACACCAAA+TGG + Chr6:84092972-84092991 MsG0680034232.01.T01:CDS 30.0%
AAATTATGAAGCACAGACAT+TGG + Chr6:84090201-84090220 MsG0680034232.01.T01:intron 30.0%
AAGAGAATAGAGGATATACT+TGG - Chr6:84089963-84089982 None:intergenic 30.0%
AAGTCTGATATAAAACTTGG+AGG - Chr6:84091611-84091630 None:intergenic 30.0%
AGCAAGTCTGATATAAAACT+TGG - Chr6:84091614-84091633 None:intergenic 30.0%
ATAATGTTTCACAAACCAGA+TGG + Chr6:84091291-84091310 MsG0680034232.01.T01:intron 30.0%
ATAGATTCTGGCCAAATTAA+TGG + Chr6:84091830-84091849 MsG0680034232.01.T01:intron 30.0%
CAATTCGTACTTTCAAAAGA+AGG - Chr6:84091414-84091433 None:intergenic 30.0%
CACTGGTGTTTAGATATAAA+TGG + Chr6:84090373-84090392 MsG0680034232.01.T01:intron 30.0%
CATCTGTTACATCAAAATAG+GGG - Chr6:84092885-84092904 None:intergenic 30.0%
CCATCTGTTACATCAAAATA+GGG - Chr6:84092886-84092905 None:intergenic 30.0%
CTAAGATGTTATAGTAGATC+AGG + Chr6:84092471-84092490 MsG0680034232.01.T01:intron 30.0%
CTGATCTACTATAACATCTT+AGG - Chr6:84092473-84092492 None:intergenic 30.0%
GACTACAAATTAGCTATGTT+TGG - Chr6:84091266-84091285 None:intergenic 30.0%
GTATGTTTGGATACACAATA+AGG + Chr6:84091454-84091473 MsG0680034232.01.T01:intron 30.0%
GTTGACCATAACAAAATTCA+AGG - Chr6:84092229-84092248 None:intergenic 30.0%
TAATTGTTAAGAGCTCGTAT+TGG - Chr6:84090566-84090585 None:intergenic 30.0%
TAGAAGATAACATGTCTCTT+TGG - Chr6:84092946-84092965 None:intergenic 30.0%
TATTTGTCCTCAATTTGACT+TGG + Chr6:84092191-84092210 MsG0680034232.01.T01:intron 30.0%
! AGAGTCCTTGAATTTTGTTA+TGG + Chr6:84092221-84092240 MsG0680034232.01.T01:intron 30.0%
! TACTCTAAAGGTTAGATTTC+TGG - Chr6:84091203-84091222 None:intergenic 30.0%
! TCTTCTAGAAGGAAAAGTTA+AGG + Chr6:84092959-84092978 MsG0680034232.01.T01:CDS 30.0%
! TTGAGGCAAGAATCAATTTT+AGG + Chr6:84091232-84091251 MsG0680034232.01.T01:intron 30.0%
!!! ATTCAAGCCATACTTTTTTG+AGG + Chr6:84090884-84090903 MsG0680034232.01.T01:intron 30.0%
!!! CCTATTTTGATGTAACAGAT+GGG + Chr6:84092884-84092903 MsG0680034232.01.T01:intron 30.0%
!!! CTATTTTGATGTAACAGATG+GGG + Chr6:84092885-84092904 MsG0680034232.01.T01:intron 30.0%
!!! TTTTTTGCACATAGACAAAG+TGG - Chr6:84090794-84090813 None:intergenic 30.0%
ACTTGGTTGTGTTTCCTAAA+GGG + Chr6:84093027-84093046 MsG0680034232.01.T01:CDS 35.0%
AGAAAGACCTCATTGGAAAT+TGG - Chr6:84092282-84092301 None:intergenic 35.0%
AGTAACGTGACAGAGAAATT+GGG + Chr6:84089875-84089894 MsG0680034232.01.T01:CDS 35.0%
CATAAAATCTACTGCAGATG+AGG + Chr6:84092634-84092653 MsG0680034232.01.T01:intron 35.0%
CCCATCTGTTACATCAAAAT+AGG - Chr6:84092887-84092906 None:intergenic 35.0%
CTTATGTCTGTTATGACTGT+AGG - Chr6:84092146-84092165 None:intergenic 35.0%
GAAAGACCTCATTGGAAATT+GGG - Chr6:84092281-84092300 None:intergenic 35.0%
GAAGAAAAACTCACTCAACT+TGG + Chr6:84089923-84089942 MsG0680034232.01.T01:CDS 35.0%
GAGACATGTTATCTTCTAGA+AGG + Chr6:84092948-84092967 MsG0680034232.01.T01:CDS 35.0%
GCAAATGAGTCAGTTGAATT+TGG + Chr6:84092996-84093015 MsG0680034232.01.T01:CDS 35.0%
GCGATACTTATTGAATAGTC+TGG + Chr6:84092002-84092021 MsG0680034232.01.T01:intron 35.0%
GTGTAGAAGAAAGAGAATAG+AGG - Chr6:84089973-84089992 None:intergenic 35.0%
TAAAGGGATGAGTTGTACTT+GGG + Chr6:84093043-84093062 MsG0680034232.01.T01:CDS 35.0%
TACATGAATTGATGTTGTGC+CGG - Chr6:84092582-84092601 None:intergenic 35.0%
TTGAATAGTCTGGTTGATCA+AGG + Chr6:84092012-84092031 MsG0680034232.01.T01:intron 35.0%
TTGGTGAACATCTCAATGTT+TGG + Chr6:84091514-84091533 MsG0680034232.01.T01:intron 35.0%
! AATAACTACCCGAAAGGTAT+TGG + Chr6:84091980-84091999 MsG0680034232.01.T01:intron 35.0%
! AATTAGCTATGTTTGGCTTC+CGG - Chr6:84091259-84091278 None:intergenic 35.0%
! CTCGAGTAAGCGTATTATTT+TGG - Chr6:84091653-84091672 None:intergenic 35.0%
! CTTTGTGTGTGTGAGATTTT+AGG + Chr6:84090759-84090778 MsG0680034232.01.T01:intron 35.0%
! GAGTGAGTTTTTCTTCAGAA+GGG - Chr6:84089919-84089938 None:intergenic 35.0%
! TAAGTATCGCCAATACCTTT+CGG - Chr6:84091992-84092011 None:intergenic 35.0%
! TATGTCCATGGAAATTTGCT+TGG - Chr6:84092918-84092937 None:intergenic 35.0%
! TCTCGTGTCAAATGTGATTT+TGG + Chr6:84091495-84091514 MsG0680034232.01.T01:intron 35.0%
! TGAGTGAGTTTTTCTTCAGA+AGG - Chr6:84089920-84089939 None:intergenic 35.0%
! TGTAACTATAGGTGTTGTGT+CGG + Chr6:84090266-84090285 MsG0680034232.01.T01:intron 35.0%
!! GATGGCTCACTTATTTCTAA+AGG - Chr6:84091889-84091908 None:intergenic 35.0%
!! TCTTTGGAATCATATGTCCA+TGG - Chr6:84092930-84092949 None:intergenic 35.0%
!!! CCCTATTTTGATGTAACAGA+TGG + Chr6:84092883-84092902 MsG0680034232.01.T01:intron 35.0%
!!! GCAAGAATCAATTTTAGGAC+CGG + Chr6:84091237-84091256 MsG0680034232.01.T01:intron 35.0%
!!! GGTTAGATTTCTGGCTTTTT+TGG - Chr6:84091194-84091213 None:intergenic 35.0%
AATGAGGTCTTTCTATGTGC+AGG + Chr6:84092288-84092307 MsG0680034232.01.T01:intron 40.0%
ACAAACCAGATGGTATTCTG+GGG + Chr6:84091301-84091320 MsG0680034232.01.T01:intron 40.0%
CAAGTACAACTCATCCCTTT+AGG - Chr6:84093044-84093063 None:intergenic 40.0%
CACAAACCAGATGGTATTCT+GGG + Chr6:84091300-84091319 MsG0680034232.01.T01:intron 40.0%
CCTAAAACAACCTCACAAAC+CGG + Chr6:84090483-84090502 MsG0680034232.01.T01:intron 40.0%
CTAAAGGGATGAGTTGTACT+TGG + Chr6:84093042-84093061 MsG0680034232.01.T01:CDS 40.0%
GAGTAACGTGACAGAGAAAT+TGG + Chr6:84089874-84089893 MsG0680034232.01.T01:CDS 40.0%
GATATAAATGGTATGTGGCC+CGG + Chr6:84090385-84090404 MsG0680034232.01.T01:intron 40.0%
TAGCAACCCAATTTCCAATG+AGG + Chr6:84092272-84092291 MsG0680034232.01.T01:intron 40.0%
TCACAAACCAGATGGTATTC+TGG + Chr6:84091299-84091318 MsG0680034232.01.T01:intron 40.0%
TGCACATAGAAAGACCTCAT+TGG - Chr6:84092289-84092308 None:intergenic 40.0%
TGCGAAAATAACTACCCGAA+AGG + Chr6:84091974-84091993 MsG0680034232.01.T01:intron 40.0%
TTAGCAAGCAAGCCTATGTT+TGG - Chr6:84091342-84091361 None:intergenic 40.0%
! AACATAGGCTTGCTTGCTAA+AGG + Chr6:84091342-84091361 MsG0680034232.01.T01:intron 40.0%
! AAGTATCGCCAATACCTTTC+GGG - Chr6:84091991-84092010 None:intergenic 40.0%
! ACTGACTCATTTGCTCCATT+TGG - Chr6:84092990-84093009 None:intergenic 40.0%
! GACTTGGTTGTGTTTCCTAA+AGG + Chr6:84093026-84093045 MsG0680034232.01.T01:CDS 40.0%
! GCTTGCTTGCTAAAGGTTAA+GGG + Chr6:84091349-84091368 MsG0680034232.01.T01:intron 40.0%
! GTTAGATTGGACATTTTCCG+TGG + Chr6:84090713-84090732 MsG0680034232.01.T01:intron 40.0%
!! AACTCACTCAACTTGGTGTT+AGG + Chr6:84089930-84089949 MsG0680034232.01.T01:CDS 40.0%
AAACACCATCGCAACAGTGA+TGG - Chr6:84091907-84091926 None:intergenic 45.0%
AAACACCCCAGAATACCATC+TGG - Chr6:84091309-84091328 None:intergenic 45.0%
AGAGCCTCTCCAAGATCTAT+TGG - Chr6:84090436-84090455 None:intergenic 45.0%
AGATTGTCGATGTCTGACAC+CGG + Chr6:84092560-84092579 MsG0680034232.01.T01:intron 45.0%
CACACACACAAAGAAGATCC+CGG - Chr6:84090752-84090771 None:intergenic 45.0%
CAGCTAGCCAAGTCAAATTG+AGG - Chr6:84092201-84092220 None:intergenic 45.0%
CCTCGCAAAACTAACTTGAG+AGG + Chr6:84090159-84090178 MsG0680034232.01.T01:intron 45.0%
GAGCCTCTCCAAGATCTATT+GGG - Chr6:84090435-84090454 None:intergenic 45.0%
GGTCAACTATAGTGCACTGA+TGG + Chr6:84092242-84092261 MsG0680034232.01.T01:intron 45.0%
GTAGGTGACCCAATAGATCT+TGG + Chr6:84090424-84090443 MsG0680034232.01.T01:intron 45.0%
GTCCTCCAAGCAAATTTCCA+TGG + Chr6:84092910-84092929 MsG0680034232.01.T01:CDS 45.0%
TACTATCAGACATCCGCTAC+CGG - Chr6:84090407-84090426 None:intergenic 45.0%
TGACCCAATAGATCTTGGAG+AGG + Chr6:84090429-84090448 MsG0680034232.01.T01:intron 45.0%
! CAAGCCTATGTTTGGTTCCA+CGG - Chr6:84091334-84091353 None:intergenic 45.0%
! GGACATTTTCCGTGGTTACT+CGG + Chr6:84090721-84090740 MsG0680034232.01.T01:intron 45.0%
! GGCTTGCTTGCTAAAGGTTA+AGG + Chr6:84091348-84091367 MsG0680034232.01.T01:intron 45.0%
! GTCCATGGAAATTTGCTTGG+AGG - Chr6:84092915-84092934 None:intergenic 45.0%
! GTCTGGTTGATCAAGGCATT+TGG + Chr6:84092019-84092038 MsG0680034232.01.T01:intron 45.0%
! TATAGGTGTTGTGTCGGTGT+CGG + Chr6:84090272-84090291 MsG0680034232.01.T01:intron 45.0%
! TTTGAAGCACAGACACTCCT+CGG - Chr6:84090334-84090353 None:intergenic 45.0%
!! AGATGGTATTCTGGGGTGTT+TGG + Chr6:84091308-84091327 MsG0680034232.01.T01:intron 45.0%
!! CCGGTTTGTGAGGTTGTTTT+AGG - Chr6:84090486-84090505 None:intergenic 45.0%
!! CTCAACTTGGTGTTAGGCAA+TGG + Chr6:84089936-84089955 MsG0680034232.01.T01:CDS 45.0%
!! GAGTCAGTTGAATTTGGTGC+TGG + Chr6:84093002-84093021 MsG0680034232.01.T01:CDS 45.0%
!! TGAATTTGGTGCTGGTGACT+TGG + Chr6:84093010-84093029 MsG0680034232.01.T01:CDS 45.0%
!!! CCTCTCAAGTTAGTTTTGCG+AGG - Chr6:84090162-84090181 None:intergenic 45.0%
ACTATCAGACATCCGCTACC+GGG - Chr6:84090406-84090425 None:intergenic 50.0%
CCGGATTTACCGAGTAACCA+CGG - Chr6:84090733-84090752 None:intergenic 50.0%
CCGTGGTTACTCGGTAAATC+CGG + Chr6:84090730-84090749 MsG0680034232.01.T01:intron 50.0%
CGTGGTTACTCGGTAAATCC+GGG + Chr6:84090731-84090750 MsG0680034232.01.T01:intron 50.0%
GATTAGGTGTGTCCTGGTGT+CGG - Chr6:84090312-84090331 None:intergenic 50.0%
GGAATCCTCAGCTCACAAAC+CGG - Chr6:84090505-84090524 None:intergenic 50.0%
TTGGCCGTGGAACCAAACAT+AGG + Chr6:84091327-84091346 MsG0680034232.01.T01:intron 50.0%
!! ACAAACCGGTTTGTGAGCTG+AGG + Chr6:84090497-84090516 MsG0680034232.01.T01:intron 50.0%
!! AGCTCACAAACCGGTTTGTG+AGG - Chr6:84090496-84090515 None:intergenic 50.0%
!! GGTAGCGGATGTCTGATAGT+AGG + Chr6:84090406-84090425 MsG0680034232.01.T01:intron 50.0%
AATGGTATGTGGCCCGGTAG+CGG + Chr6:84090391-84090410 MsG0680034232.01.T01:intron 55.0%
ACCAGGACACACCTAATCCG+AGG + Chr6:84090314-84090333 MsG0680034232.01.T01:intron 55.0%
GCACAGACACTCCTCGGATT+AGG - Chr6:84090328-84090347 None:intergenic 55.0%
GTGAGCCATCACTGTTGCGA+TGG + Chr6:84091899-84091918 MsG0680034232.01.T01:intron 55.0%
! TCCTCGGATTAGGTGTGTCC+TGG - Chr6:84090318-84090337 None:intergenic 55.0%
!! TATTCTGGGGTGTTTGGCCG+TGG + Chr6:84091314-84091333 MsG0680034232.01.T01:intron 55.0%
! TCCTGGTGTCGGACACGCGT+CGG - Chr6:84090301-84090320 None:intergenic 65.0%
GCCGACGCGTGTCCGACACC+AGG + Chr6:84090297-84090316 MsG0680034232.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr6 gene 84089872 84093199 84089872 ID=MsG0680034232.01;Name=MsG0680034232.01
Chr6 mRNA 84089872 84093199 84089872 ID=MsG0680034232.01.T01;Parent=MsG0680034232.01;Name=MsG0680034232.01.T01;_AED=0.50;_eAED=0.50;_QI=0|1|0.5|1|0|0|2|93|98
Chr6 exon 84092902 84093199 84092902 ID=MsG0680034232.01.T01:exon:19392;Parent=MsG0680034232.01.T01
Chr6 exon 84089872 84089963 84089872 ID=MsG0680034232.01.T01:exon:19391;Parent=MsG0680034232.01.T01
Chr6 CDS 84089872 84089963 84089872 ID=MsG0680034232.01.T01:cds;Parent=MsG0680034232.01.T01
Chr6 CDS 84092902 84093106 84092902 ID=MsG0680034232.01.T01:cds;Parent=MsG0680034232.01.T01
Chr6 three_prime_UTR 84093107 84093199 84093107 ID=MsG0680034232.01.T01:three_prime_utr;Parent=MsG0680034232.01.T01
Chr6 mRNA 84092897 84093106 84092897 ID=MsG0680034232.01.T02;Parent=MsG0680034232.01;Name=MsG0680034232.01.T02;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|69
Chr6 exon 84092897 84093106 84092897 ID=MsG0680034232.01.T02:exon:19393;Parent=MsG0680034232.01.T02
Chr6 CDS 84092897 84093106 84092897 ID=MsG0680034232.01.T02:cds;Parent=MsG0680034232.01.T02
Gene Sequence

>MsG0680034232.01.T02

AACAGATGGGGTTGTCCTCCAAGCAAATTTCCATGGACATATGATTCCAAAGAGACATGTTATCTTCTAGAAGGAAAAGTTAAGGTAACACCAAATGGAGCAAATGAGTCAGTTGAATTTGGTGCTGGTGACTTGGTTGTGTTTCCTAAAGGGATGAGTTGTACTTGGGATGTGTCTGTTGCTGTGAACAAGCACTATCTCTTTGAATAA

>MsG0680034232.01.T01

ATGAGTAACGTGACAGAGAAATTGGGCATCAAGATTGAAAGAAACCCTTCTGAAGAAAAACTCACTCAACTTGGTGTTAGGCAATGGTCCAAATGGGGTTGTCCTCCAAGCAAATTTCCATGGACATATGATTCCAAAGAGACATGTTATCTTCTAGAAGGAAAAGTTAAGGTAACACCAAATGGAGCAAATGAGTCAGTTGAATTTGGTGCTGGTGACTTGGTTGTGTTTCCTAAAGGGATGAGTTGTACTTGGGATGTGTCTGTTGCTGTGAACAAGCACTATCTCTTTGAATAA
Protein sequence

>MsG0680034232.01.T02

NRWGCPPSKFPWTYDSKETCYLLEGKVKVTPNGANESVEFGAGDLVVFPKGMSCTWDVSVAVNKHYLFE*

>MsG0680034232.01.T01

MSNVTEKLGIKIERNPSEEKLTQLGVRQWSKWGCPPSKFPWTYDSKETCYLLEGKVKVTPNGANESVEFGAGDLVVFPKGMSCTWDVSVAVNKHYLFE*