AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035888.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035888.01.T01 MTR_6g093010 96.429 56 2 0 1 56 1 56 2.07e-35 114
MsG0680035888.01.T01 MTR_8g107150 80.000 35 7 0 37 71 20 54 1.80e-13 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035888.01.T01 AT2G31490 81.429 70 13 0 1 70 1 70 3.95e-41 129

Find 33 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATTATCATCATCGAAAA+TGG 0.203994 6:+114003084 MsG0680035888.01.T01:exon
CCTCTCTGTGTCAATGGGCC+TGG 0.302634 6:-114002979 None:intergenic
CGTCGCAATCTTCTTCTTGT+TGG 0.305084 6:+114003193 MsG0680035888.01.T01:CDS
CTTCTTCTTGTTGGTATCTT+CGG 0.319314 6:+114003202 MsG0680035888.01.T01:CDS
CTCTCTGTGTCAATGGGCCT+GGG 0.319416 6:-114002978 None:intergenic
AAACAAATACATTGAAGATT+GGG 0.354310 6:+114003129 MsG0680035888.01.T01:CDS
TATTTACCTCTCTGTGTCAA+TGG 0.389967 6:-114002985 None:intergenic
ATGATTGAGTTGCGTGGGTT+AGG 0.397021 6:+114002955 MsG0680035888.01.T01:five_prime_UTR
AAAACAAATACATTGAAGAT+TGG 0.399418 6:+114003128 MsG0680035888.01.T01:CDS
ACCCACGCAACTCAATCATC+TGG 0.412158 6:-114002951 None:intergenic
ATGCCTTTGTAGACGAGAAC+AGG 0.444933 6:-114003235 None:intergenic
ATTTACCTCTCTGTGTCAAT+GGG 0.455697 6:-114002984 None:intergenic
GAGTTGCGTGGGTTAGGCCC+AGG 0.484355 6:+114002961 MsG0680035888.01.T01:five_prime_UTR
GAGAGAGATCTGAAGGAAGA+AGG 0.485933 6:+114003057 MsG0680035888.01.T01:five_prime_UTR
TAAGGCTTGAACTTCCTGTA+TGG 0.491957 6:-114006252 None:intergenic
AAGACAATGGCCGACCATAC+AGG 0.509897 6:+114006238 MsG0680035888.01.T01:CDS
GAATTATCATCATCGAAAAT+GGG 0.518150 6:+114003085 MsG0680035888.01.T01:exon
ATCGAAAATGGGTGGAGGAA+TGG 0.519119 6:+114003096 MsG0680035888.01.T01:exon
TTGAAGATTGGGGAACTGCT+AGG 0.519133 6:+114003140 MsG0680035888.01.T01:CDS
ATCTCGAACACAATTTCCGT+TGG 0.534903 6:+114003167 MsG0680035888.01.T01:CDS
CCCAGATGATTGAGTTGCGT+GGG 0.540619 6:+114002950 MsG0680035888.01.T01:five_prime_UTR
TGAAGATTGGGGAACTGCTA+GGG 0.554642 6:+114003141 MsG0680035888.01.T01:CDS
GAAGATTGCGACGAGTCCAA+CGG 0.565690 6:-114003183 None:intergenic
CCCACGCAACTCAATCATCT+GGG 0.566048 6:-114002950 None:intergenic
AACAAATACATTGAAGATTG+GGG 0.581008 6:+114003130 MsG0680035888.01.T01:CDS
GCTTGAACTTCCTGTATGGT+CGG 0.587228 6:-114006248 None:intergenic
ACCCAGATGATTGAGTTGCG+TGG 0.594419 6:+114002949 MsG0680035888.01.T01:five_prime_UTR
TCATCATCGAAAATGGGTGG+AGG 0.601325 6:+114003091 MsG0680035888.01.T01:exon
AGAGGTAAATACAGTGAGTG+AGG 0.604885 6:+114002997 MsG0680035888.01.T01:five_prime_UTR
GTTCCTGTTCTCGTCTACAA+AGG 0.608218 6:+114003232 MsG0680035888.01.T01:CDS
TTATCATCATCGAAAATGGG+TGG 0.631838 6:+114003088 MsG0680035888.01.T01:exon
CCAGGCCCATTGACACAGAG+AGG 0.700364 6:+114002979 MsG0680035888.01.T01:five_prime_UTR
CATATGCAAGATGAAGACAA+TGG 0.724975 6:+114006225 MsG0680035888.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAATTTATTATAGATAACA+AGG - Chr6:114005724-114005743 None:intergenic 15.0%
!!! AACTTATTTTCAATTGTTTT+GGG + Chr6:114003452-114003471 MsG0680035888.01.T01:intron 15.0%
!!! TGTTTTATTATAAGCTATTT+TGG + Chr6:114004284-114004303 MsG0680035888.01.T01:intron 15.0%
!! AAAAAATAAGTCAATCCAAA+AGG - Chr6:114003479-114003498 None:intergenic 20.0%
!! AAAACAAATACATTGAAGAT+TGG + Chr6:114003128-114003147 MsG0680035888.01.T01:CDS 20.0%
!! AAACAAATACATTGAAGATT+GGG + Chr6:114003129-114003148 MsG0680035888.01.T01:CDS 20.0%
!! AATAAGTTGTATATCAAAAC+AGG + Chr6:114005555-114005574 MsG0680035888.01.T01:intron 20.0%
!! AATTGTTAAATGATGTGATA+TGG + Chr6:114006112-114006131 MsG0680035888.01.T01:intron 20.0%
!! ATAAGTTGTATATCAAAACA+GGG + Chr6:114005556-114005575 MsG0680035888.01.T01:intron 20.0%
!! ATTTCTGAATAGTTCAATTT+AGG + Chr6:114003317-114003336 MsG0680035888.01.T01:intron 20.0%
!! GAAAAATTGTGTTTATCTAA+GGG - Chr6:114003659-114003678 None:intergenic 20.0%
!! TATTAACAACTCAGAATTTA+GGG + Chr6:114003902-114003921 MsG0680035888.01.T01:intron 20.0%
!! TGAAAAATTGTGTTTATCTA+AGG - Chr6:114003660-114003679 None:intergenic 20.0%
!! TTATTAACAACTCAGAATTT+AGG + Chr6:114003901-114003920 MsG0680035888.01.T01:intron 20.0%
!!! AACACATTTTAGCATTATTT+TGG + Chr6:114003711-114003730 MsG0680035888.01.T01:intron 20.0%
!!! ACACATTTTAGCATTATTTT+GGG + Chr6:114003712-114003731 MsG0680035888.01.T01:intron 20.0%
!!! CAACTTATTTTCAATTGTTT+TGG + Chr6:114003451-114003470 MsG0680035888.01.T01:intron 20.0%
!!! CAATTTTTACAAGCTTTTTT+CGG - Chr6:114004328-114004347 None:intergenic 20.0%
!!! GATACTGATTTATTTTTTAC+TGG + Chr6:114005764-114005783 MsG0680035888.01.T01:intron 20.0%
!!! TTCCTAGTTTTGTTAAATAA+TGG + Chr6:114005188-114005207 MsG0680035888.01.T01:intron 20.0%
! AAAAATAAGCCAATCCAAAT+TGG + Chr6:114003633-114003652 MsG0680035888.01.T01:intron 25.0%
! AAATCATGTCATCATGTATT+AGG - Chr6:114004911-114004930 None:intergenic 25.0%
! AACAAATACATTGAAGATTG+GGG + Chr6:114003130-114003149 MsG0680035888.01.T01:CDS 25.0%
! AACAGTTCAAAAGAATTTAG+GGG + Chr6:114003960-114003979 MsG0680035888.01.T01:intron 25.0%
! ACAACAGTTCAAAAGAATTT+AGG + Chr6:114003958-114003977 MsG0680035888.01.T01:intron 25.0%
! ACGTTATTTGAGCTTATATA+TGG + Chr6:114003357-114003376 MsG0680035888.01.T01:intron 25.0%
! AGAATTATCATCATCGAAAA+TGG + Chr6:114003084-114003103 MsG0680035888.01.T01:exon 25.0%
! AGCCATTATTTAACAAAACT+AGG - Chr6:114005193-114005212 None:intergenic 25.0%
! AGGAACTAAATAGCATATAA+CGG - Chr6:114005173-114005192 None:intergenic 25.0%
! AGTTCAATTTAGGAATTTGA+GGG + Chr6:114003327-114003346 MsG0680035888.01.T01:intron 25.0%
! ATAAATCAGTATCATGTATG+AGG - Chr6:114005757-114005776 None:intergenic 25.0%
! ATTATAGATAACAAGGTTTG+TGG - Chr6:114005717-114005736 None:intergenic 25.0%
! CAACAGTTCAAAAGAATTTA+GGG + Chr6:114003959-114003978 MsG0680035888.01.T01:intron 25.0%
! CAATCTAAACAAATTGAGTA+TGG + Chr6:114004671-114004690 MsG0680035888.01.T01:intron 25.0%
! CAGAATTTAGGGATTTAATT+AGG + Chr6:114003913-114003932 MsG0680035888.01.T01:intron 25.0%
! CCAAACAATAAAATGAATCA+TGG - Chr6:114006041-114006060 None:intergenic 25.0%
! GAATTATCATCATCGAAAAT+GGG + Chr6:114003085-114003104 MsG0680035888.01.T01:exon 25.0%
! GTTGTTAATAAATTGACCAA+TGG - Chr6:114003892-114003911 None:intergenic 25.0%
! TAAATGCTTGCTTGAATTAT+TGG + Chr6:114004722-114004741 MsG0680035888.01.T01:intron 25.0%
! TAATAAAACAAACGTTAACC+AGG - Chr6:114005582-114005601 None:intergenic 25.0%
! TAGTTCAATTTAGGAATTTG+AGG + Chr6:114003326-114003345 MsG0680035888.01.T01:intron 25.0%
! TCAAATAAGCTAATACAAAC+AGG + Chr6:114005457-114005476 MsG0680035888.01.T01:intron 25.0%
! TCCATACATACATGAAAAAA+AGG - Chr6:114006166-114006185 None:intergenic 25.0%
! TGATTATTTCAATCTACCAT+TGG + Chr6:114003873-114003892 MsG0680035888.01.T01:intron 25.0%
! TGGTTGTAATGTTTAAATTG+TGG + Chr6:114004742-114004761 MsG0680035888.01.T01:intron 25.0%
! TTAATGCTTGCTTGAATTAT+TGG + Chr6:114004779-114004798 MsG0680035888.01.T01:intron 25.0%
!! AAAATTGGATTTCAAGCTTT+TGG + Chr6:114004623-114004642 MsG0680035888.01.T01:intron 25.0%
!! AAAGCTTGAAATCCAATTTT+AGG - Chr6:114004623-114004642 None:intergenic 25.0%
!! AAGTTTAAGATGTTGAATCA+TGG + Chr6:114005680-114005699 MsG0680035888.01.T01:intron 25.0%
!! CAATTTTAAACCTAACCAAA+AGG - Chr6:114005343-114005362 None:intergenic 25.0%
!! CCATGATTCATTTTATTGTT+TGG + Chr6:114006038-114006057 MsG0680035888.01.T01:intron 25.0%
!!! AAGAATTTAGGGGTTTTATT+AGG + Chr6:114003970-114003989 MsG0680035888.01.T01:intron 25.0%
!!! ACCTTTTTTTCATGTATGTA+TGG + Chr6:114006162-114006181 MsG0680035888.01.T01:intron 25.0%
!!! CTTTTGGTTAGGTTTAAAAT+TGG + Chr6:114005341-114005360 MsG0680035888.01.T01:intron 25.0%
AAGAGAGAAGAAGATGAAAA+TGG - Chr6:114003285-114003304 None:intergenic 30.0%
ACAAACAACAAAACCAATCA+TGG - Chr6:114005311-114005330 None:intergenic 30.0%
AGGTAGAAGTGAAAACAAAA+TGG - Chr6:114006146-114006165 None:intergenic 30.0%
ATCCAAACAAGTCCTAAAAT+TGG + Chr6:114004608-114004627 MsG0680035888.01.T01:intron 30.0%
CTTACATAAGCTTATAGCAT+GGG - Chr6:114004229-114004248 None:intergenic 30.0%
GCAAATAATTAAGCTTGTCA+AGG + Chr6:114003506-114003525 MsG0680035888.01.T01:intron 30.0%
TACTGGATATTTGAACTACT+AGG + Chr6:114005781-114005800 MsG0680035888.01.T01:intron 30.0%
TGGAAATTTAAGCTTCATCT+TGG - Chr6:114005928-114005947 None:intergenic 30.0%
TTGAACGTATAATGTGTGTT+TGG - Chr6:114005887-114005906 None:intergenic 30.0%
TTTCAAAGCCATAGTATGTA+AGG - Chr6:114005029-114005048 None:intergenic 30.0%
! GAATTTAAAGTTTGCGATGT+TGG + Chr6:114004820-114004839 MsG0680035888.01.T01:intron 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG - Chr6:114005423-114005442 None:intergenic 30.0%
!! ATAAGTTTTGTGAGCTTGAT+TGG + Chr6:114003382-114003401 MsG0680035888.01.T01:intron 30.0%
!! ATTTTGATCAAGTCTGTGTT+TGG + Chr6:114004152-114004171 MsG0680035888.01.T01:intron 30.0%
!! TTGTTATGAATGCATTGACT+TGG + Chr6:114004121-114004140 MsG0680035888.01.T01:intron 30.0%
!!! ATCCAATTTTAGGACTTGTT+TGG - Chr6:114004613-114004632 None:intergenic 30.0%
ACAAGCAATTAGACCTTCTA+TGG + Chr6:114005080-114005099 MsG0680035888.01.T01:intron 35.0%
ACGTATAATGTGTGTTTGGT+TGG - Chr6:114005883-114005902 None:intergenic 35.0%
AGAAGGTCTAATTGCTTGTT+TGG - Chr6:114005079-114005098 None:intergenic 35.0%
ATTTACCTCTCTGTGTCAAT+GGG - Chr6:114002987-114003006 None:intergenic 35.0%
CAAGCAATTAGACCTTCTAT+GGG + Chr6:114005081-114005100 MsG0680035888.01.T01:intron 35.0%
CATATGCAAGATGAAGACAA+TGG + Chr6:114006225-114006244 MsG0680035888.01.T01:CDS 35.0%
CCAATTTACTACAGCTAACA+AGG - Chr6:114004878-114004897 None:intergenic 35.0%
CCTTGTTAGCTGTAGTAAAT+TGG + Chr6:114004875-114004894 MsG0680035888.01.T01:intron 35.0%
CTTCTTCTTGTTGGTATCTT+CGG + Chr6:114003202-114003221 MsG0680035888.01.T01:CDS 35.0%
GAAGAAGATGAAAATGGAAG+TGG - Chr6:114003279-114003298 None:intergenic 35.0%
GCTTACATAAGCTTATAGCA+TGG - Chr6:114004230-114004249 None:intergenic 35.0%
GTAAGGTCTAATTGCTTGTT+TGG - Chr6:114006004-114006023 None:intergenic 35.0%
TAGGTGTATGTTTGGTATCA+TGG + Chr6:114005800-114005819 MsG0680035888.01.T01:intron 35.0%
TATTTACCTCTCTGTGTCAA+TGG - Chr6:114002988-114003007 None:intergenic 35.0%
TCAAATAAGCCAATCCAAAC+AGG + Chr6:114004410-114004429 MsG0680035888.01.T01:intron 35.0%
TCAATTTAGGAATTTGAGGG+AGG + Chr6:114003330-114003349 MsG0680035888.01.T01:intron 35.0%
TGAACTACTAGGTGTATGTT+TGG + Chr6:114005792-114005811 MsG0680035888.01.T01:intron 35.0%
TGTTTATCTAAGGGCCAATT+TGG - Chr6:114003650-114003669 None:intergenic 35.0%
TTATCATCATCGAAAATGGG+TGG + Chr6:114003088-114003107 MsG0680035888.01.T01:exon 35.0%
! AACTTGTTCTAATTTCGCGA+GGG - Chr6:114005141-114005160 None:intergenic 35.0%
! ATTGACAACCCTAGACTTTT+CGG + Chr6:114005278-114005297 MsG0680035888.01.T01:intron 35.0%
! GGATTCATGTTTTCTTAGCT+CGG - Chr6:114005058-114005077 None:intergenic 35.0%
! TAGCTTTTGCAAAATCACAG+TGG + Chr6:114005825-114005844 MsG0680035888.01.T01:intron 35.0%
!! AACTGTATTTTGAGCCTGTT+TGG - Chr6:114004427-114004446 None:intergenic 35.0%
!! GTTTGTTGCTGAATTCCTTT+TGG + Chr6:114005325-114005344 MsG0680035888.01.T01:intron 35.0%
!! TAACTTGTTCTAATTTCGCG+AGG - Chr6:114005142-114005161 None:intergenic 35.0%
!! TATTTTGAGCCTGTTTGGAT+TGG - Chr6:114004422-114004441 None:intergenic 35.0%
!! TTGCTGAATTCCTTTTGGTT+AGG + Chr6:114005330-114005349 MsG0680035888.01.T01:intron 35.0%
!!! AGCATTATTTTGGGTCTGTT+AGG + Chr6:114003721-114003740 MsG0680035888.01.T01:intron 35.0%
!!! GGATTTCAAGCTTTTGGAAT+CGG + Chr6:114004629-114004648 MsG0680035888.01.T01:intron 35.0%
!!! TCAATTGTTTTGGGACCTTT+TGG + Chr6:114003461-114003480 MsG0680035888.01.T01:intron 35.0%
AGAGGTAAATACAGTGAGTG+AGG + Chr6:114002997-114003016 MsG0680035888.01.T01:five_prime_UTR 40.0%
ATCTAAGGGCCAATTTGGAT+TGG - Chr6:114003645-114003664 None:intergenic 40.0%
ATCTCGAACACAATTTCCGT+TGG + Chr6:114003167-114003186 MsG0680035888.01.T01:CDS 40.0%
CTACTAACATAAGCACCTGT+GGG - Chr6:114004570-114004589 None:intergenic 40.0%
GCTTATTTGAGCTTACCAAC+TGG - Chr6:114004400-114004419 None:intergenic 40.0%
GGGTTGTCAAACTCAAATAG+TGG + Chr6:114005101-114005120 MsG0680035888.01.T01:intron 40.0%
TAAGGCTTGAACTTCCTGTA+TGG - Chr6:114006255-114006274 None:intergenic 40.0%
TCTACTAACATAAGCACCTG+TGG - Chr6:114004571-114004590 None:intergenic 40.0%
TGAGTTTGACAACCCATAGA+AGG - Chr6:114005096-114005115 None:intergenic 40.0%
TTGGGTCTGTTAGGATAAAC+AGG + Chr6:114003730-114003749 MsG0680035888.01.T01:intron 40.0%
TTGTATATCAAAACAGGGCC+TGG + Chr6:114005561-114005580 MsG0680035888.01.T01:intron 40.0%
TTTGCACCTTATAGCACAAG+CGG + Chr6:114004188-114004207 MsG0680035888.01.T01:intron 40.0%
TTTGTAACATGAGCCAAGCT+AGG + Chr6:114005967-114005986 MsG0680035888.01.T01:intron 40.0%
! GGATTCTCATTTTCCTAGCT+TGG - Chr6:114005983-114006002 None:intergenic 40.0%
! TGGACATTGGAGCTTCATTT+TGG - Chr6:114005003-114005022 None:intergenic 40.0%
! TGTGTGTTTGGTTGGTATCA+CGG - Chr6:114005875-114005894 None:intergenic 40.0%
AACAAGGTCTGTAGACAGTG+CGG - Chr6:114004862-114004881 None:intergenic 45.0%
AGAGAGAGAGAGAGATCTGA+AGG + Chr6:114003050-114003069 MsG0680035888.01.T01:five_prime_UTR 45.0%
AGCCATAGTATGTAAGGAGC+TGG - Chr6:114005023-114005042 None:intergenic 45.0%
ATCGAAAATGGGTGGAGGAA+TGG + Chr6:114003096-114003115 MsG0680035888.01.T01:exon 45.0%
ATGCCTTTGTAGACGAGAAC+AGG - Chr6:114003238-114003257 None:intergenic 45.0%
CGTCGCAATCTTCTTCTTGT+TGG + Chr6:114003193-114003212 MsG0680035888.01.T01:CDS 45.0%
CTCATGACGCAACATTGTGA+TGG - Chr6:114004042-114004061 None:intergenic 45.0%
GAGAGAGATCTGAAGGAAGA+AGG + Chr6:114003057-114003076 MsG0680035888.01.T01:five_prime_UTR 45.0%
GAGTGAGTCCGAAAAGTCTA+GGG - Chr6:114005289-114005308 None:intergenic 45.0%
GCTTGAACTTCCTGTATGGT+CGG - Chr6:114006251-114006270 None:intergenic 45.0%
GTATGTAAGGAGCTGGACAT+TGG - Chr6:114005016-114005035 None:intergenic 45.0%
GTCCAGCTCCTTACATACTA+TGG + Chr6:114005018-114005037 MsG0680035888.01.T01:intron 45.0%
GTTCCTGTTCTCGTCTACAA+AGG + Chr6:114003232-114003251 MsG0680035888.01.T01:CDS 45.0%
GTTGTAGCATTGCAACGTAG+TGG + Chr6:114005221-114005240 MsG0680035888.01.T01:intron 45.0%
TCATCATCGAAAATGGGTGG+AGG + Chr6:114003091-114003110 MsG0680035888.01.T01:exon 45.0%
TGAAGATTGGGGAACTGCTA+GGG + Chr6:114003141-114003160 MsG0680035888.01.T01:CDS 45.0%
TGCGATGTTGGAGCATAGAT+GGG + Chr6:114004832-114004851 MsG0680035888.01.T01:intron 45.0%
TGGAGCGACTCAAGAAAGTA+AGG - Chr6:114006021-114006040 None:intergenic 45.0%
TGGCTCATGTTACAAAGCCA+AGG - Chr6:114005963-114005982 None:intergenic 45.0%
TTCCAGCTTCTCACAAACCT+TGG + Chr6:114005943-114005962 MsG0680035888.01.T01:intron 45.0%
TTGAAGATTGGGGAACTGCT+AGG + Chr6:114003140-114003159 MsG0680035888.01.T01:CDS 45.0%
TTGCAGACTGCGGAAAATAG+TGG - Chr6:114005259-114005278 None:intergenic 45.0%
TTGCGATGTTGGAGCATAGA+TGG + Chr6:114004831-114004850 MsG0680035888.01.T01:intron 45.0%
TTTCGGACTCACTCCATGAT+TGG + Chr6:114005295-114005314 MsG0680035888.01.T01:intron 45.0%
! ATGATTGAGTTGCGTGGGTT+AGG + Chr6:114002955-114002974 MsG0680035888.01.T01:five_prime_UTR 45.0%
! CTTCATTTTGGACGTGCGTT+TGG - Chr6:114004991-114005010 None:intergenic 45.0%
AAGACAATGGCCGACCATAC+AGG + Chr6:114006238-114006257 MsG0680035888.01.T01:CDS 50.0%
ACCCACGCAACTCAATCATC+TGG - Chr6:114002954-114002973 None:intergenic 50.0%
AGCCAAGGTTTGTGAGAAGC+TGG - Chr6:114005948-114005967 None:intergenic 50.0%
AGTTCTCCAAACAGTCCCAC+AGG + Chr6:114004552-114004571 MsG0680035888.01.T01:intron 50.0%
CCCACGCAACTCAATCATCT+GGG - Chr6:114002953-114002972 None:intergenic 50.0%
CGACAACCGCTTGTGCTATA+AGG - Chr6:114004197-114004216 None:intergenic 50.0%
CTCACAAGACTTGTGCCAGT+TGG + Chr6:114004382-114004401 MsG0680035888.01.T01:intron 50.0%
GAAGATTGCGACGAGTCCAA+CGG - Chr6:114003186-114003205 None:intergenic 50.0%
GGAGTGAGTCCGAAAAGTCT+AGG - Chr6:114005290-114005309 None:intergenic 50.0%
GGGTTGTCAATTGCAGACTG+CGG - Chr6:114005269-114005288 None:intergenic 50.0%
TAAGCACCTGTGGGACTGTT+TGG - Chr6:114004561-114004580 None:intergenic 50.0%
! ACCCAGATGATTGAGTTGCG+TGG + Chr6:114002949-114002968 MsG0680035888.01.T01:five_prime_UTR 50.0%
! CCCAGATGATTGAGTTGCGT+GGG + Chr6:114002950-114002969 MsG0680035888.01.T01:five_prime_UTR 50.0%
CTCTCTGTGTCAATGGGCCT+GGG - Chr6:114002981-114003000 None:intergenic 55.0%
CCAGGCCCATTGACACAGAG+AGG + Chr6:114002979-114002998 MsG0680035888.01.T01:five_prime_UTR 60.0%
CCTCTCTGTGTCAATGGGCC+TGG - Chr6:114002982-114003001 None:intergenic 60.0%
!! GAGTTGCGTGGGTTAGGCCC+AGG + Chr6:114002961-114002980 MsG0680035888.01.T01:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 114002944 114006275 114002944 ID=MsG0680035888.01;Name=MsG0680035888.01
Chr6 mRNA 114002944 114006275 114002944 ID=MsG0680035888.01.T01;Parent=MsG0680035888.01;Name=MsG0680035888.01.T01;_AED=0.50;_eAED=0.50;_QI=159|1|1|1|0|0|2|0|72
Chr6 exon 114002944 114003270 114002944 ID=MsG0680035888.01.T01:exon:9992;Parent=MsG0680035888.01.T01
Chr6 exon 114006225 114006275 114006225 ID=MsG0680035888.01.T01:exon:9993;Parent=MsG0680035888.01.T01
Chr6 five_prime_UTR 114002944 114003102 114002944 ID=MsG0680035888.01.T01:five_prime_utr;Parent=MsG0680035888.01.T01
Chr6 CDS 114003103 114003270 114003103 ID=MsG0680035888.01.T01:cds;Parent=MsG0680035888.01.T01
Chr6 CDS 114006225 114006275 114006225 ID=MsG0680035888.01.T01:cds;Parent=MsG0680035888.01.T01
Gene Sequence

>MsG0680035888.01.T01

ATGGGTGGAGGAATGGAAGCAAAGAAAAACAAATACATTGAAGATTGGGGAACTGCTAGGGAGAATCTCGAACACAATTTCCGTTGGACTCGTCGCAATCTTCTTCTTGTTGGTATCTTCGGTATCGCTGTTCCTGTTCTCGTCTACAAAGGCATCGTCAAAGAATTCCATATGCAAGATGAAGACAATGGCCGACCATACAGGAAGTTCAAGCCTTAA

Protein sequence

>MsG0680035888.01.T01

MGGGMEAKKNKYIEDWGTARENLEHNFRWTRRNLLLVGIFGIAVPVLVYKGIVKEFHMQDEDNGRPYRKFKP*