AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005169.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005169.01.T01 MTR_1g094180 96.259 294 11 0 1 294 5 298 0.0 587
MsG0180005169.01.T01 MTR_1g094180 96.259 294 11 0 1 294 1 294 0.0 587
MsG0180005169.01.T01 MTR_1g050538 59.839 249 94 3 1 248 1 244 2.54e-101 297
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005169.01.T01 AT2G39170 43.426 251 102 7 1 248 1 214 3.71e-50 166

Find 64 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCTTTCTGTCTGAGAATT+TGG 0.214548 1:-87938683 None:intergenic
CATGAATTCTCTACCGTTGA+TGG 0.268118 1:+87938341 MsG0180005169.01.T01:CDS
CAACAACAATATCATATAAC+AGG 0.309074 1:-87939505 None:intergenic
ATATTGTTGTTGAAATGTTC+AGG 0.315653 1:+87939516 MsG0180005169.01.T01:three_prime_UTR
AGGCTTATCTTGGTGGTTCA+TGG 0.335124 1:-87939385 None:intergenic
AACCTCTAGACACATCAATT+AGG 0.346493 1:-87936771 None:intergenic
ACCTATCATCTCATTGACTA+TGG 0.347470 1:-87938585 None:intergenic
CGGCATAACTTCATCATTGC+AGG 0.353848 1:+87938901 MsG0180005169.01.T01:CDS
CACATTGCAAATCATATTAT+CGG 0.357315 1:-87939592 None:intergenic
TTGTCAGCTTTAATGACATT+TGG 0.384892 1:-87938467 None:intergenic
CAGACCGATGAAAGTGATAT+TGG 0.386094 1:+87938983 MsG0180005169.01.T01:CDS
AATGATGAGAAGATAAATAC+TGG 0.386743 1:+87939319 MsG0180005169.01.T01:CDS
ACCTCTAGACACATCAATTA+GGG 0.395040 1:-87936770 None:intergenic
TTGAATCTTCCCAAACTCTA+AGG 0.399239 1:-87939453 None:intergenic
TCTTCAACCTGACTTGATAT+AGG 0.413076 1:-87938944 None:intergenic
GTGATTGACCGTGGCAAATC+AGG 0.414138 1:-87938872 None:intergenic
TCCATAGTCAATGAGATGAT+AGG 0.429467 1:+87938584 MsG0180005169.01.T01:CDS
TGCTACAACCAGGCTTATCT+TGG 0.440671 1:-87939395 None:intergenic
AACTTTGCACACTGAAGACT+TGG 0.451922 1:+87938517 MsG0180005169.01.T01:CDS
TTGGTGTTGATGTTGATGAA+TGG 0.456620 1:-87938664 None:intergenic
AGGTGACATAAACAAATCTC+TGG 0.458453 1:+87938604 MsG0180005169.01.T01:CDS
AAACTAGAGGAGTGGCTTGA+AGG 0.458965 1:+87939064 MsG0180005169.01.T01:CDS
AGTTATTGTCATTGTCAGAA+AGG 0.464519 1:+87939011 MsG0180005169.01.T01:CDS
ATATCGTAGCTTCTCTTCGT+TGG 0.471398 1:-87938849 None:intergenic
TGATTTGCCTATATCAAGTC+AGG 0.478166 1:+87938937 MsG0180005169.01.T01:CDS
ACATTCTTTCATTGATCGAA+TGG 0.483354 1:-87938555 None:intergenic
TACAACCAGGCTTATCTTGG+TGG 0.486544 1:-87939392 None:intergenic
TCTACTGATCCTTCACCATC+AGG 0.487970 1:-87938824 None:intergenic
CTTGATATAGGCAAATCATC+AGG 0.509077 1:-87938932 None:intergenic
TTTGCACACTGAAGACTTGG+AGG 0.512330 1:+87938520 MsG0180005169.01.T01:CDS
GTTGATGTTGATGAATGGAT+TGG 0.527813 1:-87938659 None:intergenic
ACATTGCAAATCATATTATC+GGG 0.533605 1:-87939591 None:intergenic
CGTGGCTAACGAACCATCTG+TGG 0.538114 1:+87938406 MsG0180005169.01.T01:CDS
AATGCCAATATCACTTTCAT+CGG 0.538393 1:-87938987 None:intergenic
AGCATGTTACTCAATTTCAA+AGG 0.554581 1:+87939414 MsG0180005169.01.T01:three_prime_UTR
CTGCGTCGCAATAATCATCA+TGG 0.556097 1:-87939096 None:intergenic
TCCCTAATTGATGTGTCTAG+AGG 0.558445 1:+87936769 MsG0180005169.01.T01:five_prime_UTR
TATTGTTGTTGAAATGTTCA+GGG 0.560397 1:+87939517 MsG0180005169.01.T01:three_prime_UTR
TTTAAAGTCGGCGAAACAGA+AGG 0.572954 1:+87938778 MsG0180005169.01.T01:CDS
ATTCGATCAATGAAAGAATG+TGG 0.577268 1:+87938557 MsG0180005169.01.T01:CDS
TGGCAACAGCCTGATGGTGA+AGG 0.583521 1:+87938815 MsG0180005169.01.T01:CDS
ATGAACCACCAAGATAAGCC+TGG 0.583906 1:+87939387 MsG0180005169.01.T01:exon
TTCAAGTGGCAACAGCCTGA+TGG 0.587264 1:+87938809 MsG0180005169.01.T01:CDS
GGTCACTTCTGTTGCAACTG+TGG 0.590032 1:-87939570 None:intergenic
AAGATAAATACTGGAAACAG+TGG 0.593609 1:+87939328 MsG0180005169.01.T01:CDS
ACTGGAAACAGTGGATTCGA+AGG 0.594257 1:+87939337 MsG0180005169.01.T01:CDS
TACGATATCCTGATTTGCCA+CGG 0.614233 1:+87938864 MsG0180005169.01.T01:CDS
GACGCAGATGAAGAAGAAAG+AGG 0.614304 1:+87939112 MsG0180005169.01.T01:CDS
CCACGGTCAATCACATCAGA+CGG 0.616977 1:+87938881 MsG0180005169.01.T01:CDS
TATCTCCACAAAACCATCAA+CGG 0.623173 1:-87938354 None:intergenic
AGAAGGTTAACAGTTTCAAG+TGG 0.626891 1:+87938795 MsG0180005169.01.T01:CDS
TAATAAAGAAGCTAAACTAG+AGG 0.628039 1:+87939051 MsG0180005169.01.T01:CDS
ATAAAGTAAAGTCCCACAGA+TGG 0.630970 1:-87938419 None:intergenic
TATAGGCAAATCATCAGGAT+CGG 0.634019 1:-87938927 None:intergenic
TGTGGAGATAAGTGAATGCA+TGG 0.634348 1:+87938367 MsG0180005169.01.T01:CDS
GTGGCTAACGAACCATCTGT+GGG 0.637429 1:+87938407 MsG0180005169.01.T01:CDS
TTGAGTAACATGCTACAACC+AGG 0.639853 1:-87939405 None:intergenic
GGCATAACTTCATCATTGCA+GGG 0.646615 1:+87938902 MsG0180005169.01.T01:CDS
AAGAAGCTAAACTAGAGGAG+TGG 0.653782 1:+87939056 MsG0180005169.01.T01:CDS
ATTGTTGTTGAAATGTTCAG+GGG 0.666820 1:+87939518 MsG0180005169.01.T01:three_prime_UTR
AACAACAATATCATATAACA+GGG 0.694890 1:-87939504 None:intergenic
CCGTCTGATGTGATTGACCG+TGG 0.714657 1:-87938881 None:intergenic
GGCGGATATGATCAAATACG+TGG 0.717411 1:+87938388 MsG0180005169.01.T01:CDS
GGAGATAAGTGAATGCATGG+CGG 0.818548 1:+87938370 MsG0180005169.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATAATAAATAAATAA+AGG - Chr1:87936371-87936390 None:intergenic 0.0%
!! AAAATAAATATTGATAAAGT+AGG + Chr1:87937435-87937454 MsG0180005169.01.T01:intron 10.0%
!! AAATCACATAATTATTATAA+AGG - Chr1:87936328-87936347 None:intergenic 10.0%
!! AATCACATAATTATTATAAA+GGG - Chr1:87936327-87936346 None:intergenic 10.0%
!!! TTTATGTTTGTTAATAAAAA+TGG - Chr1:87937015-87937034 None:intergenic 10.0%
!! AAAACAAAAAAACCAAAAAA+AGG + Chr1:87938635-87938654 MsG0180005169.01.T01:CDS 15.0%
!! AAACAAAAAAACCAAAAAAA+GGG + Chr1:87938636-87938655 MsG0180005169.01.T01:CDS 15.0%
!! AAACTATAATAATATGCTAA+AGG + Chr1:87937078-87937097 MsG0180005169.01.T01:intron 15.0%
!! ATAGTATTTGTAAATATTAC+AGG - Chr1:87936829-87936848 None:intergenic 15.0%
!! ATCACATAATTATTATAAAG+GGG - Chr1:87936326-87936345 None:intergenic 15.0%
!! TAGTATTTGTAAATATTACA+GGG - Chr1:87936828-87936847 None:intergenic 15.0%
!!! TTTTTCAAATGTTTTAAAGT+CGG + Chr1:87938766-87938785 MsG0180005169.01.T01:CDS 15.0%
!! AAACATAAAATCTGTATGAA+TGG + Chr1:87937026-87937045 MsG0180005169.01.T01:intron 20.0%
!! AACAACAATATCATATAACA+GGG - Chr1:87939507-87939526 None:intergenic 20.0%
!! AAGGCAAAATAAATTAAGAA+AGG - Chr1:87936545-87936564 None:intergenic 20.0%
!! ATCTTTCCATTTACAAAAAT+GGG - Chr1:87937551-87937570 None:intergenic 20.0%
!! GATTAACAAATTCAATTGAA+TGG - Chr1:87938132-87938151 None:intergenic 20.0%
!! TAATTATGTGATTTATCAAG+AGG + Chr1:87936334-87936353 MsG0180005169.01.T01:intron 20.0%
!! TATACTTTATATCTGAATGT+GGG + Chr1:87936429-87936448 MsG0180005169.01.T01:intron 20.0%
!! TATCTTTCCATTTACAAAAA+TGG - Chr1:87937552-87937571 None:intergenic 20.0%
!! TCACATAATTATTATAAAGG+GGG - Chr1:87936325-87936344 None:intergenic 20.0%
!! TTATACTTTATATCTGAATG+TGG + Chr1:87936428-87936447 MsG0180005169.01.T01:intron 20.0%
!!! ATTATATATGATGATGATGA+TGG - Chr1:87938104-87938123 None:intergenic 20.0%
! AAATCTATATCTTAGGTGAT+AGG + Chr1:87937483-87937502 MsG0180005169.01.T01:intron 25.0%
! AAATGGAAAGATATTTGTTC+AGG + Chr1:87937559-87937578 MsG0180005169.01.T01:intron 25.0%
! AACTTACTATGTTTCTTTCT+TGG + Chr1:87938283-87938302 MsG0180005169.01.T01:intron 25.0%
! AATGATGAGAAGATAAATAC+TGG + Chr1:87939319-87939338 MsG0180005169.01.T01:CDS 25.0%
! AATGGAAAGATATTTGTTCA+GGG + Chr1:87937560-87937579 MsG0180005169.01.T01:intron 25.0%
! AATTGAATGTATCAATCCAA+TGG + Chr1:87938189-87938208 MsG0180005169.01.T01:intron 25.0%
! ACATTGCAAATCATATTATC+GGG - Chr1:87939594-87939613 None:intergenic 25.0%
! CAACAACAATATCATATAAC+AGG - Chr1:87939508-87939527 None:intergenic 25.0%
! CACATTGCAAATCATATTAT+CGG - Chr1:87939595-87939614 None:intergenic 25.0%
! GGATGAAATCAAAATAATCA+TGG - Chr1:87937137-87937156 None:intergenic 25.0%
! GTAAATATTACAGGGAATTA+AGG - Chr1:87936820-87936839 None:intergenic 25.0%
! GTAAATGGATAAAAAGGAAA+AGG + Chr1:87937373-87937392 MsG0180005169.01.T01:intron 25.0%
! GTCAAATAACAAAAATGACT+TGG - Chr1:87936570-87936589 None:intergenic 25.0%
! TAATAAAGAAGCTAAACTAG+AGG + Chr1:87939051-87939070 MsG0180005169.01.T01:CDS 25.0%
! TCAACATTTACTGATACAAA+AGG - Chr1:87938228-87938247 None:intergenic 25.0%
! TCAATGGTAAATGGATAAAA+AGG + Chr1:87937367-87937386 MsG0180005169.01.T01:intron 25.0%
! TGACAAAAATATTGTCGAAA+AGG + Chr1:87938484-87938503 MsG0180005169.01.T01:CDS 25.0%
!! AGATATGATTTTGTTCTTCA+TGG + Chr1:87936704-87936723 MsG0180005169.01.T01:intron 25.0%
!! ATATTGTTGTTGAAATGTTC+AGG + Chr1:87939516-87939535 MsG0180005169.01.T01:three_prime_UTR 25.0%
!! GATGGAATTTTAAACTGATA+AGG - Chr1:87938086-87938105 None:intergenic 25.0%
!! TAACAAAAATGACTTGGAAA+AGG - Chr1:87936564-87936583 None:intergenic 25.0%
!! TATTGTTGTTGAAATGTTCA+GGG + Chr1:87939517-87939536 MsG0180005169.01.T01:three_prime_UTR 25.0%
!! TGTATCAGTAAATGTTGATT+AGG + Chr1:87938230-87938249 MsG0180005169.01.T01:intron 25.0%
!!! AGTTCTTTTAGAACATTCAT+GGG + Chr1:87937696-87937715 MsG0180005169.01.T01:intron 25.0%
!!! ATCTTATCTTCACTTTTTCT+GGG + Chr1:87936214-87936233 MsG0180005169.01.T01:five_prime_UTR 25.0%
!!! ATGATTCCCATTTTTGTAAA+TGG + Chr1:87937542-87937561 MsG0180005169.01.T01:intron 25.0%
!!! TAAATTAAGAAAGGAGTGTT+TGG - Chr1:87936536-87936555 None:intergenic 25.0%
!!! TATGATTTGGCATCTTTTTT+GGG + Chr1:87937727-87937746 MsG0180005169.01.T01:intron 25.0%
!!! TGATTATTTTGATTTCATCC+CGG + Chr1:87937137-87937156 MsG0180005169.01.T01:intron 25.0%
!!! TTATGATTTGGCATCTTTTT+TGG + Chr1:87937726-87937745 MsG0180005169.01.T01:intron 25.0%
!!! TTTGCTTCCTGATTTTTTAA+AGG + Chr1:87936742-87936761 MsG0180005169.01.T01:five_prime_UTR 25.0%
AAAAACAGAACCAGCAAATA+AGG - Chr1:87937646-87937665 None:intergenic 30.0%
AAGATAAATACTGGAAACAG+TGG + Chr1:87939328-87939347 MsG0180005169.01.T01:CDS 30.0%
AATGCCAATATCACTTTCAT+CGG - Chr1:87938990-87939009 None:intergenic 30.0%
ACAATTCAGAGAGATGATAA+TGG - Chr1:87937616-87937635 None:intergenic 30.0%
ACATTCTTTCATTGATCGAA+TGG - Chr1:87938558-87938577 None:intergenic 30.0%
AGCATGTTACTCAATTTCAA+AGG + Chr1:87939414-87939433 MsG0180005169.01.T01:three_prime_UTR 30.0%
AGCTCCATTCAAAAAACATT+AGG - Chr1:87937166-87937185 None:intergenic 30.0%
AGTCTTACAGGAAAATACAT+TGG - Chr1:87937304-87937323 None:intergenic 30.0%
AGTTATTGTCATTGTCAGAA+AGG + Chr1:87939011-87939030 MsG0180005169.01.T01:CDS 30.0%
ATCAATGACAAAAACAAGGA+GGG - Chr1:87939545-87939564 None:intergenic 30.0%
ATGGAAAGATATTTGTTCAG+GGG + Chr1:87937561-87937580 MsG0180005169.01.T01:intron 30.0%
ATTCGATCAATGAAAGAATG+TGG + Chr1:87938557-87938576 MsG0180005169.01.T01:CDS 30.0%
CATCAATGTAAGAAAATGTG+AGG + Chr1:87936900-87936919 MsG0180005169.01.T01:intron 30.0%
CTAGAGTGATAAAGTTCTTA+TGG + Chr1:87937942-87937961 MsG0180005169.01.T01:intron 30.0%
GAACAAACATGATACACTAT+TGG + Chr1:87939211-87939230 MsG0180005169.01.T01:intron 30.0%
GCAAATAGGATATGAAAGTA+AGG - Chr1:87937514-87937533 None:intergenic 30.0%
GTCTATCAATGACAAAAACA+AGG - Chr1:87939549-87939568 None:intergenic 30.0%
TATCAATGACAAAAACAAGG+AGG - Chr1:87939546-87939565 None:intergenic 30.0%
TCATATCCTATTTGCCAATT+GGG + Chr1:87937519-87937538 MsG0180005169.01.T01:intron 30.0%
TGAACAAATGAATGATTGAC+TGG - Chr1:87937829-87937848 None:intergenic 30.0%
TGATTTATCAAGAGGAACAA+GGG + Chr1:87936342-87936361 MsG0180005169.01.T01:intron 30.0%
TTAATACACACACGTGTAAA+AGG - Chr1:87937264-87937283 None:intergenic 30.0%
TTCAAAAAACATTAGGTTCC+CGG - Chr1:87937159-87937178 None:intergenic 30.0%
TTCATATCCTATTTGCCAAT+TGG + Chr1:87937518-87937537 MsG0180005169.01.T01:intron 30.0%
TTGAAATAGTAGCTACTACT+TGG + Chr1:87936954-87936973 MsG0180005169.01.T01:intron 30.0%
TTGATTTAAATACCCTCTCA+AGG - Chr1:87936273-87936292 None:intergenic 30.0%
! AGAAACATAGTAAGTTGACT+AGG - Chr1:87938279-87938298 None:intergenic 30.0%
! ATAAGGATTTCACGTTTTAG+TGG - Chr1:87938069-87938088 None:intergenic 30.0%
! ATGAACTGTATTTTGTCTTC+AGG + Chr1:87938312-87938331 MsG0180005169.01.T01:intron 30.0%
! ATTGTTGTTGAAATGTTCAG+GGG + Chr1:87939518-87939537 MsG0180005169.01.T01:three_prime_UTR 30.0%
! GAAACATAGTAAGTTGACTA+GGG - Chr1:87938278-87938297 None:intergenic 30.0%
! GGAAACACCTTTAAAAAATC+AGG - Chr1:87936752-87936771 None:intergenic 30.0%
! GTTGATTTCTTTATGTCAAC+AGG + Chr1:87939280-87939299 MsG0180005169.01.T01:intron 30.0%
! TCTCTGGAAATCTATATCTT+AGG + Chr1:87937476-87937495 MsG0180005169.01.T01:intron 30.0%
! TGTATAATGTCCTTATTTGC+TGG + Chr1:87937633-87937652 MsG0180005169.01.T01:intron 30.0%
! TTGTCAGCTTTAATGACATT+TGG - Chr1:87938470-87938489 None:intergenic 30.0%
!! ACATTTTAGTCCTTAGAGTT+TGG + Chr1:87939443-87939462 MsG0180005169.01.T01:three_prime_UTR 30.0%
!! CATGAATGTTCTAAAAGAAC+TGG - Chr1:87937697-87937716 None:intergenic 30.0%
!! CATTTTAGTCCTTAGAGTTT+GGG + Chr1:87939444-87939463 MsG0180005169.01.T01:three_prime_UTR 30.0%
!!! CAGTTCTTTTAGAACATTCA+TGG + Chr1:87937695-87937714 MsG0180005169.01.T01:intron 30.0%
!!! CATCTTATCTTCACTTTTTC+TGG + Chr1:87936213-87936232 MsG0180005169.01.T01:five_prime_UTR 30.0%
!!! GATTATTTTGATTTCATCCC+GGG + Chr1:87937138-87937157 MsG0180005169.01.T01:intron 30.0%
!!! GGAACCTAATGTTTTTTGAA+TGG + Chr1:87937159-87937178 MsG0180005169.01.T01:intron 30.0%
AAAATGGGAATCATCCCAAT+TGG - Chr1:87937536-87937555 None:intergenic 35.0%
AACCTCTAGACACATCAATT+AGG - Chr1:87936774-87936793 None:intergenic 35.0%
AATCATCCCAATTGGCAAAT+AGG - Chr1:87937528-87937547 None:intergenic 35.0%
AATCTCACACATAAACGATG+CGG + Chr1:87937848-87937867 MsG0180005169.01.T01:intron 35.0%
AATTTCAGCGATGAAGAAGA+AGG - Chr1:87936250-87936269 None:intergenic 35.0%
ACCTCTAGACACATCAATTA+GGG - Chr1:87936773-87936792 None:intergenic 35.0%
AGAAGGTTAACAGTTTCAAG+TGG + Chr1:87938795-87938814 MsG0180005169.01.T01:CDS 35.0%
AGGCTAATTTAGACAACCAT+TGG - Chr1:87938208-87938227 None:intergenic 35.0%
AGGTGACATAAACAAATCTC+TGG + Chr1:87938604-87938623 MsG0180005169.01.T01:CDS 35.0%
AGTAGTGTACGTCATTTGTT+CGG + Chr1:87937341-87937360 MsG0180005169.01.T01:intron 35.0%
ATAAAGTAAAGTCCCACAGA+TGG - Chr1:87938422-87938441 None:intergenic 35.0%
ATGATTGACTGGACATAAAG+AGG - Chr1:87937818-87937837 None:intergenic 35.0%
ATGGGTCGAGATTTATGATT+TGG + Chr1:87937714-87937733 MsG0180005169.01.T01:intron 35.0%
CTTGATATAGGCAAATCATC+AGG - Chr1:87938935-87938954 None:intergenic 35.0%
GGAAATTCCAAAACAGATTC+AGG - Chr1:87937676-87937695 None:intergenic 35.0%
GTGATTTATCAAGAGGAACA+AGG + Chr1:87936341-87936360 MsG0180005169.01.T01:intron 35.0%
GTTCTTTCTGTCTGAGAATT+TGG - Chr1:87938686-87938705 None:intergenic 35.0%
TATAGGCAAATCATCAGGAT+CGG - Chr1:87938930-87938949 None:intergenic 35.0%
TATCTCCACAAAACCATCAA+CGG - Chr1:87938357-87938376 None:intergenic 35.0%
TCAAAAAACATTAGGTTCCC+GGG - Chr1:87937158-87937177 None:intergenic 35.0%
TCAGTACTCTTAAGTCTTAC+AGG - Chr1:87937316-87937335 None:intergenic 35.0%
TCCATAGTCAATGAGATGAT+AGG + Chr1:87938584-87938603 MsG0180005169.01.T01:CDS 35.0%
TGTGACTCGAAAAACTCATT+TGG + Chr1:87937202-87937221 MsG0180005169.01.T01:intron 35.0%
TTCTTCATGGACTTTCTTGT+AGG + Chr1:87936717-87936736 MsG0180005169.01.T01:intron 35.0%
TTGAATCTTCCCAAACTCTA+AGG - Chr1:87939456-87939475 None:intergenic 35.0%
TTGGAAAAGCGAATCCTATT+AGG + Chr1:87937765-87937784 MsG0180005169.01.T01:intron 35.0%
TTTGAATGGAGCTACTAAGT+TGG + Chr1:87937173-87937192 MsG0180005169.01.T01:intron 35.0%
! ACCTATCATCTCATTGACTA+TGG - Chr1:87938588-87938607 None:intergenic 35.0%
! ACTTGGTAATTCACACTTTG+TGG + Chr1:87936971-87936990 MsG0180005169.01.T01:intron 35.0%
! AGACAGAAAGAACTCGTTTT+TGG + Chr1:87938693-87938712 MsG0180005169.01.T01:CDS 35.0%
! GAAAATACATTGGCTGACAA+GGG - Chr1:87937294-87937313 None:intergenic 35.0%
! GATAGTTTCACATTAGTCTC+TGG + Chr1:87937460-87937479 MsG0180005169.01.T01:intron 35.0%
! GTTGATGTTGATGAATGGAT+TGG - Chr1:87938662-87938681 None:intergenic 35.0%
! TCAAAATAATCATGGTGCCA+TGG - Chr1:87937129-87937148 None:intergenic 35.0%
! TCTTCAACCTGACTTGATAT+AGG - Chr1:87938947-87938966 None:intergenic 35.0%
! TGATTTGCCTATATCAAGTC+AGG + Chr1:87938937-87938956 MsG0180005169.01.T01:CDS 35.0%
!! ACAGAAAGAACTCGTTTTTG+GGG + Chr1:87938695-87938714 MsG0180005169.01.T01:CDS 35.0%
!! ATAGGATTCGCTTTTCCAAA+AGG - Chr1:87937764-87937783 None:intergenic 35.0%
!! ATGCTTTTTATGCTCAGGAA+GGG + Chr1:87938723-87938742 MsG0180005169.01.T01:CDS 35.0%
!! ATTAAGAAAGGAGTGTTTGG+TGG - Chr1:87936533-87936552 None:intergenic 35.0%
!! CAATCATGCTTTTTATGCTC+AGG + Chr1:87938718-87938737 MsG0180005169.01.T01:CDS 35.0%
!! GACAGAAAGAACTCGTTTTT+GGG + Chr1:87938694-87938713 MsG0180005169.01.T01:CDS 35.0%
!! TCACGTTTTAGTGGAATGAT+TGG - Chr1:87938060-87938079 None:intergenic 35.0%
!! TTGGTGTTGATGTTGATGAA+TGG - Chr1:87938667-87938686 None:intergenic 35.0%
AAATGTGAGGCAGAGAAATG+TGG + Chr1:87936913-87936932 MsG0180005169.01.T01:intron 40.0%
AACTTTGCACACTGAAGACT+TGG + Chr1:87938517-87938536 MsG0180005169.01.T01:CDS 40.0%
AAGAAGCTAAACTAGAGGAG+TGG + Chr1:87939056-87939075 MsG0180005169.01.T01:CDS 40.0%
AATGGAAGAGAGCAAGGATA+AGG + Chr1:87937044-87937063 MsG0180005169.01.T01:intron 40.0%
AATGTGAGGCAGAGAAATGT+GGG + Chr1:87936914-87936933 MsG0180005169.01.T01:intron 40.0%
ATATCGTAGCTTCTCTTCGT+TGG - Chr1:87938852-87938871 None:intergenic 40.0%
ATCGCTGAAATTCCTTGAGA+GGG + Chr1:87936258-87936277 MsG0180005169.01.T01:intron 40.0%
ATGGAAGAGAGCAAGGATAA+GGG + Chr1:87937045-87937064 MsG0180005169.01.T01:intron 40.0%
CAGACCGATGAAAGTGATAT+TGG + Chr1:87938983-87939002 MsG0180005169.01.T01:CDS 40.0%
CATGAATTCTCTACCGTTGA+TGG + Chr1:87938341-87938360 MsG0180005169.01.T01:CDS 40.0%
CCAAAACAGATTCAGGACTT+CGG - Chr1:87937669-87937688 None:intergenic 40.0%
CTATTGACCACACACCTAAT+AGG - Chr1:87937782-87937801 None:intergenic 40.0%
GAACAAATGACGTACACTAC+TGG - Chr1:87937342-87937361 None:intergenic 40.0%
GGCATAACTTCATCATTGCA+GGG + Chr1:87938902-87938921 MsG0180005169.01.T01:CDS 40.0%
GTAGTGTACGTCATTTGTTC+GGG + Chr1:87937342-87937361 MsG0180005169.01.T01:intron 40.0%
TCCCTAATTGATGTGTCTAG+AGG + Chr1:87936769-87936788 MsG0180005169.01.T01:five_prime_UTR 40.0%
TGTATGAATGGAAGAGAGCA+AGG + Chr1:87937038-87937057 MsG0180005169.01.T01:intron 40.0%
TGTGGAGATAAGTGAATGCA+TGG + Chr1:87938367-87938386 MsG0180005169.01.T01:CDS 40.0%
TTGAGTAACATGCTACAACC+AGG - Chr1:87939408-87939427 None:intergenic 40.0%
! CTGCATTTTGAGCATGTTGT+TGG - Chr1:87938445-87938464 None:intergenic 40.0%
! GAAGAAGAAAGAGGTTAGTC+TGG + Chr1:87939121-87939140 MsG0180005169.01.T01:intron 40.0%
! GGAAAATACATTGGCTGACA+AGG - Chr1:87937295-87937314 None:intergenic 40.0%
! TACGATATCCTGATTTGCCA+CGG + Chr1:87938864-87938883 MsG0180005169.01.T01:CDS 40.0%
! TTTAAAGTCGGCGAAACAGA+AGG + Chr1:87938778-87938797 MsG0180005169.01.T01:CDS 40.0%
! TTTGGCTGTGTTTAAAGTCG+TGG + Chr1:87937220-87937239 MsG0180005169.01.T01:intron 40.0%
!! AAATAATCATGGTGCCATGG+TGG - Chr1:87937126-87937145 None:intergenic 40.0%
!! AATAATCATGGTGCCATGGT+GGG - Chr1:87937125-87937144 None:intergenic 40.0%
!! CATGCTTTTTATGCTCAGGA+AGG + Chr1:87938722-87938741 MsG0180005169.01.T01:CDS 40.0%
!! CGTTTTAGTGGAATGATTGG+AGG - Chr1:87938057-87938076 None:intergenic 40.0%
!! TGCTTTTTATGCTCAGGAAG+GGG + Chr1:87938724-87938743 MsG0180005169.01.T01:CDS 40.0%
!!! GAATGGATTGGCCCTTTTTT+TGG - Chr1:87938650-87938669 None:intergenic 40.0%
AAACTAGAGGAGTGGCTTGA+AGG + Chr1:87939064-87939083 MsG0180005169.01.T01:CDS 45.0%
AATCTGCTGCAATACGCGTT+AGG + Chr1:87938148-87938167 MsG0180005169.01.T01:intron 45.0%
AGCGAATCCTATTAGGTGTG+TGG + Chr1:87937772-87937791 MsG0180005169.01.T01:intron 45.0%
ATGAACCACCAAGATAAGCC+TGG + Chr1:87939387-87939406 MsG0180005169.01.T01:exon 45.0%
CATCGCTGAAATTCCTTGAG+AGG + Chr1:87936257-87936276 MsG0180005169.01.T01:intron 45.0%
CGGCATAACTTCATCATTGC+AGG + Chr1:87938901-87938920 MsG0180005169.01.T01:CDS 45.0%
CTGCGTCGCAATAATCATCA+TGG - Chr1:87939099-87939118 None:intergenic 45.0%
GACGCAGATGAAGAAGAAAG+AGG + Chr1:87939112-87939131 MsG0180005169.01.T01:CDS 45.0%
GGAGATAAGTGAATGCATGG+CGG + Chr1:87938370-87938389 MsG0180005169.01.T01:CDS 45.0%
GGCGGATATGATCAAATACG+TGG + Chr1:87938388-87938407 MsG0180005169.01.T01:CDS 45.0%
GTCATTTGTTCGGGAGTCAA+TGG + Chr1:87937351-87937370 MsG0180005169.01.T01:intron 45.0%
GTTCGGGAGTCAATGGTAAA+TGG + Chr1:87937358-87937377 MsG0180005169.01.T01:intron 45.0%
TACAACCAGGCTTATCTTGG+TGG - Chr1:87939395-87939414 None:intergenic 45.0%
TCTACTGATCCTTCACCATC+AGG - Chr1:87938827-87938846 None:intergenic 45.0%
TGCTACAACCAGGCTTATCT+TGG - Chr1:87939398-87939417 None:intergenic 45.0%
TTTGCACACTGAAGACTTGG+AGG + Chr1:87938520-87938539 MsG0180005169.01.T01:CDS 45.0%
! ACTGGAAACAGTGGATTCGA+AGG + Chr1:87939337-87939356 MsG0180005169.01.T01:CDS 45.0%
! AGGCTTATCTTGGTGGTTCA+TGG - Chr1:87939388-87939407 None:intergenic 45.0%
! CCGAAGTCCTGAATCTGTTT+TGG + Chr1:87937666-87937685 MsG0180005169.01.T01:intron 45.0%
! TATCTCTCTAGTTCCCACCA+TGG + Chr1:87937109-87937128 MsG0180005169.01.T01:intron 45.0%
!! CAGAGAGATGATAATGGCAG+AGG - Chr1:87937610-87937629 None:intergenic 45.0%
!! TGGGCTTTGTAGACTCCTTT+TGG + Chr1:87937746-87937765 MsG0180005169.01.T01:intron 45.0%
!!! CTCTACCGTTGATGGTTTTG+TGG + Chr1:87938349-87938368 MsG0180005169.01.T01:CDS 45.0%
ATAAACGATGCGGCAGCTGT+AGG + Chr1:87937858-87937877 MsG0180005169.01.T01:intron 50.0%
CCACGGTCAATCACATCAGA+CGG + Chr1:87938881-87938900 MsG0180005169.01.T01:CDS 50.0%
GAGGCAGAGAAATGTGGGTA+TGG + Chr1:87936919-87936938 MsG0180005169.01.T01:intron 50.0%
GGTCACTTCTGTTGCAACTG+TGG - Chr1:87939573-87939592 None:intergenic 50.0%
GTGATTGACCGTGGCAAATC+AGG - Chr1:87938875-87938894 None:intergenic 50.0%
GTGGCTAACGAACCATCTGT+GGG + Chr1:87938407-87938426 MsG0180005169.01.T01:CDS 50.0%
TTCAAGTGGCAACAGCCTGA+TGG + Chr1:87938809-87938828 MsG0180005169.01.T01:CDS 50.0%
CCGTCTGATGTGATTGACCG+TGG - Chr1:87938884-87938903 None:intergenic 55.0%
CGTGGCTAACGAACCATCTG+TGG + Chr1:87938406-87938425 MsG0180005169.01.T01:CDS 55.0%
! TGGCAACAGCCTGATGGTGA+AGG + Chr1:87938815-87938834 MsG0180005169.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr1 gene 87936209 87939632 87936209 ID=MsG0180005169.01;Name=MsG0180005169.01
Chr1 mRNA 87936209 87939632 87936209 ID=MsG0180005169.01.T01;Parent=MsG0180005169.01;Name=MsG0180005169.01.T01;_AED=0.48;_eAED=0.48;_QI=83|1|1|1|0.33|0.25|4|242|294
Chr1 exon 87936209 87936235 87936209 ID=MsG0180005169.01.T01:exon:37006;Parent=MsG0180005169.01.T01
Chr1 exon 87936739 87936790 87936739 ID=MsG0180005169.01.T01:exon:37007;Parent=MsG0180005169.01.T01
Chr1 exon 87938334 87939133 87938334 ID=MsG0180005169.01.T01:exon:37008;Parent=MsG0180005169.01.T01
Chr1 exon 87939302 87939632 87939302 ID=MsG0180005169.01.T01:exon:37009;Parent=MsG0180005169.01.T01
Chr1 five_prime_UTR 87936209 87936235 87936209 ID=MsG0180005169.01.T01:five_prime_utr;Parent=MsG0180005169.01.T01
Chr1 five_prime_UTR 87936739 87936790 87936739 ID=MsG0180005169.01.T01:five_prime_utr;Parent=MsG0180005169.01.T01
Chr1 five_prime_UTR 87938334 87938337 87938334 ID=MsG0180005169.01.T01:five_prime_utr;Parent=MsG0180005169.01.T01
Chr1 CDS 87938338 87939133 87938338 ID=MsG0180005169.01.T01:cds;Parent=MsG0180005169.01.T01
Chr1 CDS 87939302 87939390 87939302 ID=MsG0180005169.01.T01:cds;Parent=MsG0180005169.01.T01
Chr1 three_prime_UTR 87939391 87939632 87939391 ID=MsG0180005169.01.T01:three_prime_utr;Parent=MsG0180005169.01.T01
Gene Sequence

>MsG0180005169.01.T01

ATGCATGAATTCTCTACCGTTGATGGTTTTGTGGAGATAAGTGAATGCATGGCGGATATGATCAAATACGTGGCTAACGAACCATCTGTGGGACTTTACTTTATCCAACAACATGCTCAAAATGCAGTGCCAAATGTCATTAAAGCTGACAAAAATATTGTCGAAAAGGTTCATGAAACAACTTTGCACACTGAAGACTTGGAGGACTCTATTACAGCCATTCGATCAATGAAAGAATGTGGATTTTCCATAGTCAATGAGATGATAGGTGACATAAACAAATCTCTGGAAATTTTGAAAACAAAAAAACCAAAAAAAGGGCCAATCCATTCATCAACATCAACACCAAATTCTCAGACAGAAAGAACTCGTTTTTGGGGCAATCATGCTTTTTATGCTCAGGAAGGGGATGATAAAAAGAGTAACTATTTTTCAAATGTTTTAAAGTCGGCGAAACAGAAGGTTAACAGTTTCAAGTGGCAACAGCCTGATGGTGAAGGATCAGTAGATTCCAACGAAGAGAAGCTACGATATCCTGATTTGCCACGGTCAATCACATCAGACGGCATAACTTCATCATTGCAGGGAACCGATCCTGATGATTTGCCTATATCAAGTCAGGTTGAAGACGAGTCTCAACACGAACAGACCGATGAAAGTGATATTGGCATTAAGTTATTGTCATTGTCAGAAAGGTTTGATGACTTCAGAGCTAATAAAGAAGCTAAACTAGAGGAGTGGCTTGAAGGAACTAGCAACCATGATGATTATTGCGACGCAGATGAAGAAGAAAGAGGTAAGAAGCTTCTCGAGAATGATGAGAAGATAAATACTGGAAACAGTGGATTCGAAGGTGAAGTGCTATTGCATGCAGTTCAGCCATGA

Protein sequence

>MsG0180005169.01.T01

MHEFSTVDGFVEISECMADMIKYVANEPSVGLYFIQQHAQNAVPNVIKADKNIVEKVHETTLHTEDLEDSITAIRSMKECGFSIVNEMIGDINKSLEILKTKKPKKGPIHSSTSTPNSQTERTRFWGNHAFYAQEGDDKKSNYFSNVLKSAKQKVNSFKWQQPDGEGSVDSNEEKLRYPDLPRSITSDGITSSLQGTDPDDLPISSQVEDESQHEQTDESDIGIKLLSLSERFDDFRANKEAKLEEWLEGTSNHDDYCDADEEERGKKLLENDEKINTGNSGFEGEVLLHAVQP*