AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007903.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007903.01.T01 MTR_2g035070 84.103 195 28 3 1 194 1 193 2.76e-95 277
MsG0280007903.01.T01 MTR_1g083780 45.122 164 70 6 20 180 24 170 1.81e-34 122
MsG0280007903.01.T01 MTR_7g112400 49.231 65 28 1 20 79 32 96 1.07e-15 71.6
MsG0280007903.01.T01 MTR_7g112403 58.209 67 23 3 110 173 1 65 3.95e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007903.01.T01 AT5G49230 43.878 196 82 7 1 188 1 176 2.41e-31 114
MsG0280007903.01.T01 AT5G49230 42.857 196 79 7 1 188 1 171 2.10e-29 108
MsG0280007903.01.T01 AT5G26990 39.614 207 96 10 1 194 1 191 3.30e-28 106
MsG0280007903.01.T01 AT3G05700 39.512 205 98 10 1 195 1 189 1.20e-27 104
MsG0280007903.01.T01 AT3G05700 42.941 170 73 8 1 160 1 156 1.27e-26 102
MsG0280007903.01.T01 AT1G56280 38.889 180 76 7 20 194 14 164 2.76e-25 98.2
MsG0280007903.01.T01 AT3G06760 42.775 173 81 7 23 187 27 189 1.11e-24 97.4
MsG0280007903.01.T01 AT3G06760 44.444 171 71 7 23 187 27 179 2.29e-24 96.3
MsG0280007903.01.T01 AT1G56280 39.877 163 67 6 37 194 34 170 1.05e-22 91.7
MsG0280007903.01.T01 AT4G02200 34.177 158 84 5 39 194 37 176 1.17e-12 65.1
MsG0280007903.01.T01 AT4G02200 34.177 158 84 5 39 194 37 176 1.23e-12 64.7
MsG0280007903.01.T01 AT4G02200 33.742 163 92 7 39 194 37 190 1.33e-12 65.1

Find 51 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCTCTCTATCTTCAATTT+AGG 0.052777 2:+22740190 MsG0280007903.01.T01:five_prime_UTR
CTCTCTCTATCTTCAATTTA+GGG 0.225284 2:+22740191 MsG0280007903.01.T01:five_prime_UTR
GCAGGATTGCATTCTCTTCT+TGG 0.245703 2:+22742191 MsG0280007903.01.T01:CDS
GTGGTGGTGGTGATGATTTA+AGG 0.255964 2:+22740436 MsG0280007903.01.T01:CDS
TCATAATCTTCAGCACAAAA+AGG 0.288334 2:-22740474 None:intergenic
AAGTTTACGTGCAGCGTAAA+AGG 0.305767 2:+22742114 MsG0280007903.01.T01:CDS
AGAAAAGAGTTGAGGGAAGC+AGG 0.309169 2:+22742173 MsG0280007903.01.T01:CDS
AAAGAAACCAACTTTCAAAA+AGG 0.347692 2:-22741606 None:intergenic
ACAGCTTCGTCACCAACAAC+TGG 0.357688 2:-22742281 None:intergenic
AACGATTGCAACAAAGTATC+AGG 0.362978 2:-22742248 None:intergenic
TTTCGAGCTATCGTTTACTA+TGG 0.363939 2:-22742336 None:intergenic
TTCAGGTGTGTCCTGCTTGT+GGG 0.376343 2:+22741519 MsG0280007903.01.T01:intron
CAAAGTATCAGGTTCGGAAT+TGG 0.385398 2:-22742237 None:intergenic
GATTTCCTTTGCTTTAGAAA+TGG 0.387756 2:+22742406 MsG0280007903.01.T01:CDS
TGGTGGTGGTGATGATTTAA+GGG 0.397394 2:+22740437 MsG0280007903.01.T01:CDS
GTTTACTATGGCAGCTTCAA+TGG 0.397661 2:-22742324 None:intergenic
AGAAATGGATGCTAAGTTGT+AGG 0.403220 2:+22742421 MsG0280007903.01.T01:CDS
ATGAATCAGAGTCCATGTTT+TGG 0.426328 2:-22740228 None:intergenic
AAAACATGGACTCTGATTCA+TGG 0.453838 2:+22740230 MsG0280007903.01.T01:exon
CGCCGTTACTATTCTCGATC+CGG 0.458010 2:+22740280 MsG0280007903.01.T01:CDS
GGATTGCATTCTCTTCTTGG+AGG 0.458470 2:+22742194 MsG0280007903.01.T01:CDS
TTTCAGGTGTGTCCTGCTTG+TGG 0.467996 2:+22741518 MsG0280007903.01.T01:intron
CCACCCCAGTGTTAGCTTGA+AGG 0.470050 2:-22740536 None:intergenic
CACCCCAGTGTTAGCTTGAA+GGG 0.485197 2:-22740535 None:intergenic
GTTATTTAGAAAAGAGTTGA+GGG 0.489200 2:+22742166 MsG0280007903.01.T01:CDS
ATGTATGTGGATACTATTGT+TGG 0.508578 2:+22742378 MsG0280007903.01.T01:CDS
GATGCTGAACCTGGTGGTGG+TGG 0.514579 2:+22740423 MsG0280007903.01.T01:CDS
AGTATCAGGTTCGGAATTGG+AGG 0.520777 2:-22742234 None:intergenic
AGCATCCATTTCTAAAGCAA+AGG 0.522803 2:-22742411 None:intergenic
CGTTATTTAGAAAAGAGTTG+AGG 0.531210 2:+22742165 MsG0280007903.01.T01:CDS
TAGCTCGAAAGATGATTTCG+TGG 0.542543 2:+22742349 MsG0280007903.01.T01:CDS
TTGCAACAAAGTATCAGGTT+CGG 0.543065 2:-22742243 None:intergenic
ATCCCCTTCAAGCTAACACT+GGG 0.555769 2:+22740532 MsG0280007903.01.T01:CDS
CATCCCCTTCAAGCTAACAC+TGG 0.580273 2:+22740531 MsG0280007903.01.T01:CDS
CCTTCAAGCTAACACTGGGG+TGG 0.582088 2:+22740536 MsG0280007903.01.T01:CDS
CGAAAGATGATTTCGTGGAA+AGG 0.582410 2:+22742354 MsG0280007903.01.T01:CDS
CTTCAAGCTAACACTGGGGT+GGG 0.591458 2:+22740537 MsG0280007903.01.T01:CDS
GGAAATGATGATGCTGAACC+TGG 0.591984 2:+22740414 MsG0280007903.01.T01:CDS
TTCGGAATTGGAGGAAGCTG+TGG 0.593717 2:-22742225 None:intergenic
CGTAAAAGGAGGGTGAGGAA+AGG 0.608256 2:+22742128 MsG0280007903.01.T01:CDS
CAGCTTCGTCACCAACAACT+GGG 0.608504 2:-22742280 None:intergenic
TTTACGTGCAGCGTAAAAGG+AGG 0.609185 2:+22742117 MsG0280007903.01.T01:CDS
TGCAGCGTAAAAGGAGGGTG+AGG 0.609548 2:+22742123 MsG0280007903.01.T01:CDS
AAATCATCACCACCACCACC+AGG 0.612097 2:-22740432 None:intergenic
GATGATGCTGAACCTGGTGG+TGG 0.614096 2:+22740420 MsG0280007903.01.T01:CDS
TTCGTGGAAAGGTATGTATG+TGG 0.623833 2:+22742365 MsG0280007903.01.T01:CDS
ACCCCAGTGTTAGCTTGAAG+GGG 0.627611 2:-22740534 None:intergenic
TACCGGATCGAGAATAGTAA+CGG 0.650025 2:-22740282 None:intergenic
TTACGTGCAGCGTAAAAGGA+GGG 0.661430 2:+22742118 MsG0280007903.01.T01:CDS
AATGATGATGCTGAACCTGG+TGG 0.756267 2:+22740417 MsG0280007903.01.T01:CDS
TCCCCTTCAAGCTAACACTG+GGG 0.795965 2:+22740533 MsG0280007903.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAATTTGCTTATATTT+TGG + Chr2:22740843-22740862 MsG0280007903.01.T01:intron 10.0%
!!! TTTTATTACATAAATTTGAT+AGG + Chr2:22741110-22741129 MsG0280007903.01.T01:intron 10.0%
!!! AAAATGTGGTTATATTTTAT+GGG + Chr2:22740879-22740898 MsG0280007903.01.T01:intron 15.0%
!!! AAAATGTGTACATTTTTTAA+TGG + Chr2:22741826-22741845 MsG0280007903.01.T01:intron 15.0%
!!! AATAAAGATGTGTTTAATTT+TGG + Chr2:22740713-22740732 MsG0280007903.01.T01:intron 15.0%
!!! TAAAAAATGTACACATTTTT+CGG - Chr2:22741825-22741844 None:intergenic 15.0%
!!! TAAAATGTGGTTATATTTTA+TGG + Chr2:22740878-22740897 MsG0280007903.01.T01:intron 15.0%
!!! TGATAAAAATTGTACTTTTA+AGG + Chr2:22740614-22740633 MsG0280007903.01.T01:intron 15.0%
!! AATGCAATAAAATATGAACA+TGG - Chr2:22741762-22741781 None:intergenic 20.0%
!! ATAATTAAGATGATTCTTAC+CGG - Chr2:22740302-22740321 None:intergenic 20.0%
!!! AAAATATCCTTTTTGAAAGT+TGG + Chr2:22741599-22741618 MsG0280007903.01.T01:intron 20.0%
!!! GAACAATTTAGTTTAAAATG+TGG + Chr2:22740865-22740884 MsG0280007903.01.T01:intron 20.0%
!!! TCAAATAAAATTTGTTTTCC+AGG - Chr2:22741785-22741804 None:intergenic 20.0%
!!! TCATCTTTTATCTAAAGATT+TGG + Chr2:22741246-22741265 MsG0280007903.01.T01:intron 20.0%
!!! TGACACTTTTCATTTATATT+AGG + Chr2:22740639-22740658 MsG0280007903.01.T01:intron 20.0%
!!! TTTAGTTTTGTTGAAATTGT+TGG + Chr2:22740349-22740368 MsG0280007903.01.T01:intron 20.0%
! AAAGAAACCAACTTTCAAAA+AGG - Chr2:22741609-22741628 None:intergenic 25.0%
! ATATAACATTATGCAGTGTT+TGG + Chr2:22741218-22741237 MsG0280007903.01.T01:intron 25.0%
! CATAAATTTGATAGGTTGTT+TGG + Chr2:22741118-22741137 MsG0280007903.01.T01:intron 25.0%
! CATGCTAAATATAAACATAC+TGG - Chr2:22741896-22741915 None:intergenic 25.0%
! GTTATTTAGAAAAGAGTTGA+GGG + Chr2:22742166-22742185 MsG0280007903.01.T01:CDS 25.0%
! TAATTAAAACAAGTTGTGTC+TGG + Chr2:22742037-22742056 MsG0280007903.01.T01:intron 25.0%
! TGAAATGAAGCTTATATTCA+AGG + Chr2:22740807-22740826 MsG0280007903.01.T01:intron 25.0%
! TTTATTTCAGTATCGTTAGA+TGG + Chr2:22741974-22741993 MsG0280007903.01.T01:intron 25.0%
!! ATTTGGTCTTTATAGACATA+CGG + Chr2:22741263-22741282 MsG0280007903.01.T01:intron 25.0%
!! GGTTATATTTTATGGGAAAA+AGG + Chr2:22740886-22740905 MsG0280007903.01.T01:intron 25.0%
!! TACTAATTAAGGGTATACAT+GGG + Chr2:22740761-22740780 MsG0280007903.01.T01:intron 25.0%
!! TATTTTATGGGAAAAAGGAT+TGG + Chr2:22740891-22740910 MsG0280007903.01.T01:intron 25.0%
!! TTCATATTTTATTGCATTCC+TGG + Chr2:22741764-22741783 MsG0280007903.01.T01:intron 25.0%
!!! GTTTTTAACTTTCAAACAGT+TGG + Chr2:22740735-22740754 MsG0280007903.01.T01:intron 25.0%
!!! TTTATTTTTAACCCAGTTGT+TGG + Chr2:22742269-22742288 MsG0280007903.01.T01:CDS 25.0%
ACACCGAAAACATATATGAA+TGG - Chr2:22741686-22741705 None:intergenic 30.0%
ACTCTCTCTATCTTCAATTT+AGG + Chr2:22740190-22740209 MsG0280007903.01.T01:five_prime_UTR 30.0%
ATGTATGTGGATACTATTGT+TGG + Chr2:22742378-22742397 MsG0280007903.01.T01:CDS 30.0%
CAATTGATACACAAGTTTGT+TGG + Chr2:22741723-22741742 MsG0280007903.01.T01:intron 30.0%
CATAATCTTCAGCACAAAAA+GGG - Chr2:22740476-22740495 None:intergenic 30.0%
CGTTATTTAGAAAAGAGTTG+AGG + Chr2:22742165-22742184 MsG0280007903.01.T01:CDS 30.0%
CTCTCTCTATCTTCAATTTA+GGG + Chr2:22740191-22740210 MsG0280007903.01.T01:five_prime_UTR 30.0%
CTGATGATTGTGATAATTGA+TGG + Chr2:22741482-22741501 MsG0280007903.01.T01:intron 30.0%
CTGTTCTATCAATACTTGTT+TGG + Chr2:22741347-22741366 MsG0280007903.01.T01:intron 30.0%
TCATAATCTTCAGCACAAAA+AGG - Chr2:22740477-22740496 None:intergenic 30.0%
! ATTGTGATAATTGATGGCAT+TGG + Chr2:22741488-22741507 MsG0280007903.01.T01:intron 30.0%
! GCACCATTCATATATGTTTT+CGG + Chr2:22741680-22741699 MsG0280007903.01.T01:intron 30.0%
! GTACTAATTAAGGGTATACA+TGG + Chr2:22740760-22740779 MsG0280007903.01.T01:intron 30.0%
! TTTGGTCTTTATAGACATAC+GGG + Chr2:22741264-22741283 MsG0280007903.01.T01:intron 30.0%
!! ACAGTTGGTAGTACTAATTA+AGG + Chr2:22740750-22740769 MsG0280007903.01.T01:intron 30.0%
!! CAGTTGGTAGTACTAATTAA+GGG + Chr2:22740751-22740770 MsG0280007903.01.T01:intron 30.0%
!! GATTTCCTTTGCTTTAGAAA+TGG + Chr2:22742406-22742425 MsG0280007903.01.T01:CDS 30.0%
!!! GTTTTTTGTGAAGTGTGTTT+GGG - Chr2:22740132-22740151 None:intergenic 30.0%
!!! TGTTGGTGATGATTTGTTTT+TGG + Chr2:22740366-22740385 MsG0280007903.01.T01:intron 30.0%
!!! TGTTTTTTGTGAAGTGTGTT+TGG - Chr2:22740133-22740152 None:intergenic 30.0%
AAAACATGGACTCTGATTCA+TGG + Chr2:22740230-22740249 MsG0280007903.01.T01:exon 35.0%
AAAAGTAGCAAATCCGGATA+TGG + Chr2:22741050-22741069 MsG0280007903.01.T01:intron 35.0%
AAAGTAGCAAATCCGGATAT+GGG + Chr2:22741051-22741070 MsG0280007903.01.T01:intron 35.0%
AAGATGAGAGAGAGCAATAT+AGG + Chr2:22740988-22741007 MsG0280007903.01.T01:intron 35.0%
CAAACTAACTTTCCCATATC+CGG - Chr2:22741066-22741085 None:intergenic 35.0%
CACCTTAAAAGTAGCAAATC+CGG + Chr2:22741044-22741063 MsG0280007903.01.T01:intron 35.0%
GAAAAACTTTGCATGTTGAG+TGG - Chr2:22741579-22741598 None:intergenic 35.0%
GACAAAGACTGACTAAAACA+TGG - Chr2:22741420-22741439 None:intergenic 35.0%
TTTCGAGCTATCGTTTACTA+TGG - Chr2:22742339-22742358 None:intergenic 35.0%
! AACGATTGCAACAAAGTATC+AGG - Chr2:22742251-22742270 None:intergenic 35.0%
! ATGAATCAGAGTCCATGTTT+TGG - Chr2:22740231-22740250 None:intergenic 35.0%
! TAGTTTGAGTTTGTGTTGAG+TGG + Chr2:22741079-22741098 MsG0280007903.01.T01:intron 35.0%
! TTGCAACAAAGTATCAGGTT+CGG - Chr2:22742246-22742265 None:intergenic 35.0%
!! AGCATCCATTTCTAAAGCAA+AGG - Chr2:22742414-22742433 None:intergenic 35.0%
!! GTTGCTTCAGATCTGTTTTT+AGG + Chr2:22740390-22740409 MsG0280007903.01.T01:intron 35.0%
!!! ATCCGGATTTGCTACTTTTA+AGG - Chr2:22741049-22741068 None:intergenic 35.0%
!!! CCATGTTTTGGTGGAAAATT+CGG - Chr2:22740219-22740238 None:intergenic 35.0%
!!! GGATTTGCTACTTTTAAGGT+GGG - Chr2:22741045-22741064 None:intergenic 35.0%
!!! GGTTGGTGTTTCTTTGTTTT+TGG + Chr2:22741449-22741468 MsG0280007903.01.T01:intron 35.0%
!!! TGGCATTGGTTATACTTTTC+AGG + Chr2:22741502-22741521 MsG0280007903.01.T01:intron 35.0%
AAGTTTACGTGCAGCGTAAA+AGG + Chr2:22742114-22742133 MsG0280007903.01.T01:CDS 40.0%
AGAAACACCAACCATGACAA+TGG - Chr2:22741442-22741461 None:intergenic 40.0%
CGAAAGATGATTTCGTGGAA+AGG + Chr2:22742354-22742373 MsG0280007903.01.T01:CDS 40.0%
GTTTACTATGGCAGCTTCAA+TGG - Chr2:22742327-22742346 None:intergenic 40.0%
TACCGGATCGAGAATAGTAA+CGG - Chr2:22740285-22740304 None:intergenic 40.0%
TAGCTCGAAAGATGATTTCG+TGG + Chr2:22742349-22742368 MsG0280007903.01.T01:CDS 40.0%
TCAGTCTTTGTCCATTGTCA+TGG + Chr2:22741428-22741447 MsG0280007903.01.T01:intron 40.0%
TCTTTGTCCATTGTCATGGT+TGG + Chr2:22741432-22741451 MsG0280007903.01.T01:intron 40.0%
! CAAAGTATCAGGTTCGGAAT+TGG - Chr2:22742240-22742259 None:intergenic 40.0%
! CCGAATTTTCCACCAAAACA+TGG + Chr2:22740216-22740235 MsG0280007903.01.T01:exon 40.0%
! TGCACGTAAACTTCTGGTTA+TGG - Chr2:22742107-22742126 None:intergenic 40.0%
! TTCGTGGAAAGGTATGTATG+TGG + Chr2:22742365-22742384 MsG0280007903.01.T01:CDS 40.0%
!! AATCAGAGTCCATGTTTTGG+TGG - Chr2:22740228-22740247 None:intergenic 40.0%
!! TGGTGGTGGTGATGATTTAA+GGG + Chr2:22740437-22740456 MsG0280007903.01.T01:CDS 40.0%
!!! CGGATTTGCTACTTTTAAGG+TGG - Chr2:22741046-22741065 None:intergenic 40.0%
!!! GCTTCAGATCTGTTTTTAGG+TGG + Chr2:22740393-22740412 MsG0280007903.01.T01:intron 40.0%
AGAAAAGAGTTGAGGGAAGC+AGG + Chr2:22742173-22742192 MsG0280007903.01.T01:CDS 45.0%
AGTATCAGGTTCGGAATTGG+AGG - Chr2:22742237-22742256 None:intergenic 45.0%
ATCCCCTTCAAGCTAACACT+GGG + Chr2:22740532-22740551 MsG0280007903.01.T01:CDS 45.0%
GCAGGATTGCATTCTCTTCT+TGG + Chr2:22742191-22742210 MsG0280007903.01.T01:CDS 45.0%
GGATTGCATTCTCTTCTTGG+AGG + Chr2:22742194-22742213 MsG0280007903.01.T01:CDS 45.0%
TGAGTTTGTGTTGAGTGGTG+TGG + Chr2:22741084-22741103 MsG0280007903.01.T01:intron 45.0%
TTACGCTGCACGTAAACTTC+TGG - Chr2:22742113-22742132 None:intergenic 45.0%
TTACGTGCAGCGTAAAAGGA+GGG + Chr2:22742118-22742137 MsG0280007903.01.T01:CDS 45.0%
TTTACGTGCAGCGTAAAAGG+AGG + Chr2:22742117-22742136 MsG0280007903.01.T01:CDS 45.0%
! AATGATGATGCTGAACCTGG+TGG + Chr2:22740417-22740436 MsG0280007903.01.T01:CDS 45.0%
! GGAAATGATGATGCTGAACC+TGG + Chr2:22740414-22740433 MsG0280007903.01.T01:CDS 45.0%
! GGATTGGTGTTCAGTGACTT+TGG + Chr2:22740907-22740926 MsG0280007903.01.T01:intron 45.0%
! TTGGTGTTCAGTGACTTTGG+TGG + Chr2:22740910-22740929 MsG0280007903.01.T01:intron 45.0%
!! GTGGTGGTGGTGATGATTTA+AGG + Chr2:22740436-22740455 MsG0280007903.01.T01:CDS 45.0%
AAATCATCACCACCACCACC+AGG - Chr2:22740435-22740454 None:intergenic 50.0%
ACAGCTTCGTCACCAACAAC+TGG - Chr2:22742284-22742303 None:intergenic 50.0%
CAGCTTCGTCACCAACAACT+GGG - Chr2:22742283-22742302 None:intergenic 50.0%
CATCCCCTTCAAGCTAACAC+TGG + Chr2:22740531-22740550 MsG0280007903.01.T01:CDS 50.0%
CCTGCTTGTGGGCAAAAAGT+GGG + Chr2:22741530-22741549 MsG0280007903.01.T01:CDS 50.0%
CGCCGTTACTATTCTCGATC+CGG + Chr2:22740280-22740299 MsG0280007903.01.T01:CDS 50.0%
CGTAAAAGGAGGGTGAGGAA+AGG + Chr2:22742128-22742147 MsG0280007903.01.T01:CDS 50.0%
CTGCTTGTGGGCAAAAAGTG+GGG + Chr2:22741531-22741550 MsG0280007903.01.T01:CDS 50.0%
CTTCAAGCTAACACTGGGGT+GGG + Chr2:22740537-22740556 MsG0280007903.01.T01:CDS 50.0%
TCCCCTTCAAGCTAACACTG+GGG + Chr2:22740533-22740552 MsG0280007903.01.T01:CDS 50.0%
TCCTGCTTGTGGGCAAAAAG+TGG + Chr2:22741529-22741548 MsG0280007903.01.T01:CDS 50.0%
TTCAGGTGTGTCCTGCTTGT+GGG + Chr2:22741519-22741538 MsG0280007903.01.T01:intron 50.0%
TTCGGAATTGGAGGAAGCTG+TGG - Chr2:22742228-22742247 None:intergenic 50.0%
TTGTGGGCAAAAAGTGGGGA+TGG + Chr2:22741535-22741554 MsG0280007903.01.T01:CDS 50.0%
! ACCCCAGTGTTAGCTTGAAG+GGG - Chr2:22740537-22740556 None:intergenic 50.0%
! CACCCCAGTGTTAGCTTGAA+GGG - Chr2:22740538-22740557 None:intergenic 50.0%
! TTTCAGGTGTGTCCTGCTTG+TGG + Chr2:22741518-22741537 MsG0280007903.01.T01:intron 50.0%
CCTTCAAGCTAACACTGGGG+TGG + Chr2:22740536-22740555 MsG0280007903.01.T01:CDS 55.0%
GATGATGCTGAACCTGGTGG+TGG + Chr2:22740420-22740439 MsG0280007903.01.T01:CDS 55.0%
TGCAGCGTAAAAGGAGGGTG+AGG + Chr2:22742123-22742142 MsG0280007903.01.T01:CDS 55.0%
! CCACCCCAGTGTTAGCTTGA+AGG - Chr2:22740539-22740558 None:intergenic 55.0%
!!! CCCACTTTTTGCCCACAAGC+AGG - Chr2:22741533-22741552 None:intergenic 55.0%
!! GATGCTGAACCTGGTGGTGG+TGG + Chr2:22740423-22740442 MsG0280007903.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 22740112 22742442 22740112 ID=MsG0280007903.01;Name=MsG0280007903.01
Chr2 mRNA 22740112 22742442 22740112 ID=MsG0280007903.01.T01;Parent=MsG0280007903.01;Name=MsG0280007903.01.T01;_AED=0.42;_eAED=0.47;_QI=123|0.33|0.25|1|0.33|0.75|4|0|215
Chr2 exon 22740112 22740301 22740112 ID=MsG0280007903.01.T01:exon:40307;Parent=MsG0280007903.01.T01
Chr2 exon 22740400 22740558 22740400 ID=MsG0280007903.01.T01:exon:40308;Parent=MsG0280007903.01.T01
Chr2 exon 22741524 22741616 22741524 ID=MsG0280007903.01.T01:exon:40309;Parent=MsG0280007903.01.T01
Chr2 exon 22742114 22742442 22742114 ID=MsG0280007903.01.T01:exon:40310;Parent=MsG0280007903.01.T01
Chr2 five_prime_UTR 22740112 22740234 22740112 ID=MsG0280007903.01.T01:five_prime_utr;Parent=MsG0280007903.01.T01
Chr2 CDS 22740235 22740301 22740235 ID=MsG0280007903.01.T01:cds;Parent=MsG0280007903.01.T01
Chr2 CDS 22740400 22740558 22740400 ID=MsG0280007903.01.T01:cds;Parent=MsG0280007903.01.T01
Chr2 CDS 22741524 22741616 22741524 ID=MsG0280007903.01.T01:cds;Parent=MsG0280007903.01.T01
Chr2 CDS 22742114 22742442 22742114 ID=MsG0280007903.01.T01:cds;Parent=MsG0280007903.01.T01
Gene Sequence

>MsG0280007903.01.T01

ATGGACTCTGATTCATGGATCTCTTCTCGTCTCTCTAACTCTTCACGCCGTTACTATTCTCGATCCGATCTGTTTTTAGGTGGAAATGATGATGCTGAACCTGGTGGTGGTGGTGATGATTTAAGGGCTGAATATCTTTGCCCTTTTTGTGCTGAAGATTATGATGTTGTTTCTCTTTGTTGTCACATTGATGAAGAACATCCCCTTCAAGCTAACACTGGGGTGGGTGTGTCCTGCTTGTGGGCAAAAAGTGGGGATGGATCTTGTTGCACATATTACCACTCAACATGCAAAGTTTTTCAAAATATCCTTTTTGAAAAAGTTTACGTGCAGCGTAAAAGGAGGGTGAGGAAAGGAGTCACTAACTCAACGTTATTTAGAAAAGAGTTGAGGGAAGCAGGATTGCATTCTCTTCTTGGAGGTTCTTCGTCCACAGCTTCCTCCAATTCCGAACCTGATACTTTGTTGCAATCGTTTATTTTTAACCCAGTTGTTGGTGACGAAGCTGTGAGCGAACAATCTAATTCTTCCATTGAAGCTGCCATAGTAAACGATAGCTCGAAAGATGATTTCGTGGAAAGGTATGTATGTGGATACTATTGTTGGATTAAGATTTCCTTTGCTTTAGAAATGGATGCTAAGTTGTAG

Protein sequence

>MsG0280007903.01.T01

MDSDSWISSRLSNSSRRYYSRSDLFLGGNDDAEPGGGGDDLRAEYLCPFCAEDYDVVSLCCHIDEEHPLQANTGVGVSCLWAKSGDGSCCTYYHSTCKVFQNILFEKVYVQRKRRVRKGVTNSTLFRKELREAGLHSLLGGSSSTASSNSEPDTLLQSFIFNPVVGDEAVSEQSNSSIEAAIVNDSSKDDFVERYVCGYYCWIKISFALEMDAKL*