AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034485.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034485.01.T01 MTR_6g069850 97.297 333 9 0 1 333 1 333 0.0 659
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034485.01.T01 AT3G17910 62.500 288 104 2 50 333 67 354 1.14e-133 384
MsG0680034485.01.T01 AT1G48510 38.650 326 173 8 24 330 21 338 1.64e-65 211
MsG0680034485.01.T01 AT1G48510 38.037 326 176 8 24 330 21 339 2.61e-65 211
MsG0680034485.01.T01 AT1G48510 38.650 326 171 9 24 330 21 336 2.98e-65 211
MsG0680034485.01.T01 AT1G48510 41.270 252 130 5 92 330 1 247 4.77e-59 192

Find 125 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAATCGTGGTGGAGATTT+TGG 0.125508 6:+88380327 MsG0680034485.01.T01:CDS
TTCTGCAGCAGTTACATTTA+TGG 0.156595 6:+88381440 MsG0680034485.01.T01:CDS
AGCAAATTTGTTACTGTTAT+AGG 0.181704 6:+88381499 MsG0680034485.01.T01:exon
ATTTCAGGAGTTACTGAAAA+TGG 0.240801 6:+88379484 MsG0680034485.01.T01:CDS
TAAAATTAGTGTTGAATTAG+AGG 0.243714 6:+88381830 MsG0680034485.01.T01:three_prime_UTR
CGGAGGTGGATGGTGGCATT+AGG 0.260529 6:-88376970 None:intergenic
AAGTGAGGAGTTAGATTCTT+TGG 0.275735 6:+88379387 MsG0680034485.01.T01:CDS
CCACGTTCAAGAAGCATTTC+AGG 0.288011 6:+88379469 MsG0680034485.01.T01:CDS
TGAAAGGAAAAGCTTCTAAA+TGG 0.296461 6:+88377256 MsG0680034485.01.T01:intron
GCGGAGCTCCGCAAGGATTC+TGG 0.303888 6:-88376996 None:intergenic
CATCCTCTGTTAACTAGAAT+TGG 0.310516 6:-88380212 None:intergenic
GGAGGTGGATGGTGGCATTA+GGG 0.320685 6:-88376969 None:intergenic
GAGCAATTGCATTTGGTCTT+GGG 0.332922 6:+88377295 MsG0680034485.01.T01:CDS
TTGAATTAGAGGTGTTAGAT+TGG 0.346247 6:+88381841 MsG0680034485.01.T01:three_prime_UTR
GAATCTAACTCCTCACTTGA+TGG 0.350213 6:-88379382 None:intergenic
GGAGCAATTGCATTTGGTCT+TGG 0.353787 6:+88377294 MsG0680034485.01.T01:CDS
ACTTGATTAGCACATGTTGC+TGG 0.363180 6:-88381632 None:intergenic
CCAAAATCTCCACCACGATT+TGG 0.379618 6:-88380327 None:intergenic
TGATCCTTGGCAATTGAGAT+TGG 0.380162 6:-88381605 None:intergenic
CTACCTGGAGCAATTGCATT+TGG 0.396302 6:+88377288 MsG0680034485.01.T01:CDS
TTCTGGAAGGCCGCAAGATC+GGG 0.402652 6:-88380794 None:intergenic
GGAAGAGGGTAAGGATTACT+TGG 0.403772 6:-88380856 None:intergenic
TAATGCCTTGATTCGAAGTT+CGG 0.411268 6:+88380888 MsG0680034485.01.T01:CDS
AAGGATTCTGGCGGCGGAGG+TGG 0.413809 6:-88376984 None:intergenic
CGCAAGGATTCTGGCGGCGG+AGG 0.414311 6:-88376987 None:intergenic
ACCATGTTAATATGTAGTTT+AGG 0.414596 6:-88380927 None:intergenic
GAAGACCCGGGATCATTTGC+AGG 0.418767 6:-88380739 None:intergenic
GGTGTTAGATTGGAGCAATA+AGG 0.420007 6:+88381851 MsG0680034485.01.T01:three_prime_UTR
TTGCATTTGGTCTTGGGAGT+TGG 0.438591 6:+88377301 MsG0680034485.01.T01:CDS
CGGTTCATGATCATCCTGAT+AGG 0.440293 6:+88379533 MsG0680034485.01.T01:CDS
GTGTTAGATTGGAGCAATAA+GGG 0.444092 6:+88381852 MsG0680034485.01.T01:three_prime_UTR
AATGTTACAGATTAAAATGT+TGG 0.450134 6:+88379306 MsG0680034485.01.T01:intron
CAATTCTAGTTAACAGAGGA+TGG 0.450262 6:+88380213 MsG0680034485.01.T01:CDS
GAATGGCGAGTAAGAGAAAA+GGG 0.451540 6:-88376946 None:intergenic
TTGCAGGAACAAATATGCTT+GGG 0.457855 6:-88380723 None:intergenic
TTTGCAGGAACAAATATGCT+TGG 0.461261 6:-88380724 None:intergenic
TAACACCTAACGAAGTGGTC+GGG 0.463253 6:+88380680 MsG0680034485.01.T01:CDS
GGAATGGCGAGTAAGAGAAA+AGG 0.464245 6:-88376947 None:intergenic
TGATCATGAACCGGCATAAG+AGG 0.466161 6:-88379523 None:intergenic
ATTCTGGCGGCGGAGGTGGA+TGG 0.467723 6:-88376980 None:intergenic
CTCCGCAAGGATTCTGGCGG+CGG 0.468159 6:-88376990 None:intergenic
TATGCACCACTGAATTTCAA+TGG 0.468291 6:-88379358 None:intergenic
TTTCTGGAAGGCCGCAAGAT+CGG 0.468311 6:-88380795 None:intergenic
AGATTCTTTGGAATTTAGAA+AGG 0.468912 6:+88379399 MsG0680034485.01.T01:CDS
CGCCGTATCTCGACCCGCAC+CGG 0.477584 6:+88377016 MsG0680034485.01.T01:CDS
TTTGTTCCTGCAAATGATCC+CGG 0.482771 6:+88380733 MsG0680034485.01.T01:CDS
TCTTCTTCCTCCGATTCAAA+TGG 0.486388 6:+88377103 MsG0680034485.01.T01:CDS
TGCCGGTGCGGGTCGAGATA+CGG 0.489052 6:-88377018 None:intergenic
GATTGTTAGAAGAGAAGATA+AGG 0.489684 6:+88377326 MsG0680034485.01.T01:CDS
ATATCATATGTCTATCTCAT+TGG 0.489876 6:+88381562 MsG0680034485.01.T01:three_prime_UTR
GAGGATGGGTTCCCCGCAGT+TGG 0.495591 6:+88380228 MsG0680034485.01.T01:CDS
CCGCAAGATCGGGCAATGCT+AGG 0.495974 6:-88380784 None:intergenic
TGAGTGCTTACCATTTGAAT+CGG 0.503045 6:-88377113 None:intergenic
TCGAAGTTCGGTGATGCCTC+AGG 0.503538 6:+88380900 MsG0680034485.01.T01:CDS
ACGGCAGCAGCGGAGCTGAA+TGG 0.506928 6:-88377058 None:intergenic
ACTACCCCGACCACTTCGTT+AGG 0.507230 6:-88380685 None:intergenic
CTATCAGGATGATCATGAAC+CGG 0.510232 6:-88379532 None:intergenic
CCTTCACCTTCACAAGCTGA+TGG 0.512078 6:+88380302 MsG0680034485.01.T01:CDS
AGTGGAGCTTATGCCGGTGC+GGG 0.517496 6:-88377029 None:intergenic
TCGAGGGAAGAGGTTGCAAA+TGG 0.520408 6:+88379333 MsG0680034485.01.T01:CDS
GAGGTGGATGGTGGCATTAG+GGG 0.521875 6:-88376968 None:intergenic
GCTTGTGAAGGTGAAGGAAG+TGG 0.523253 6:-88380296 None:intergenic
ATCAAGGCATTAACATCCTT+AGG 0.523796 6:-88380877 None:intergenic
GGATGGTGGCATTAGGGGAA+TGG 0.524202 6:-88376963 None:intergenic
CTGGCGGCGGAGGTGGATGG+TGG 0.531711 6:-88376977 None:intergenic
TGTTATAACACCTCTTATGC+CGG 0.533498 6:+88379513 MsG0680034485.01.T01:CDS
CATCACCGAACTTCGAATCA+AGG 0.533561 6:-88380893 None:intergenic
AGACCAAATGCAATTGCTCC+AGG 0.535961 6:-88377291 None:intergenic
GCATTAACATCCTTAGGAAG+AGG 0.537524 6:-88380871 None:intergenic
ATTAAAATGTTGGAGTATCG+AGG 0.541307 6:+88379316 MsG0680034485.01.T01:CDS
ACATCCTTAGGAAGAGGGTA+AGG 0.544644 6:-88380865 None:intergenic
ATTTAGAAAGGTTGTCTGCA+AGG 0.547498 6:+88379411 MsG0680034485.01.T01:CDS
AAATGGTGGTTGTATCTACC+TGG 0.550366 6:+88377273 MsG0680034485.01.T01:CDS
TTGTTCCTGCAAATGATCCC+GGG 0.561035 6:+88380734 MsG0680034485.01.T01:CDS
TAATCCTTACCCTCTTCCTA+AGG 0.561040 6:+88380861 MsG0680034485.01.T01:CDS
TTTAGAAAGGTTGTCTGCAA+GGG 0.561782 6:+88379412 MsG0680034485.01.T01:CDS
GAGTAAGAGAAAAGGGAGAG+AGG 0.565189 6:-88376939 None:intergenic
TGTTGGAGTATCGAGGGAAG+AGG 0.567895 6:+88379323 MsG0680034485.01.T01:CDS
CTTCGTTAGGTGTTACAGAC+GGG 0.568536 6:-88380672 None:intergenic
CCTAGCATTGCCCGATCTTG+CGG 0.570187 6:+88380784 MsG0680034485.01.T01:CDS
ACGGACAGTGGAGCTTATGC+CGG 0.572072 6:-88377035 None:intergenic
GAAGTGGTCGGGGTAGTTCG+CGG 0.578152 6:+88380691 MsG0680034485.01.T01:CDS
CATTAACATCCTTAGGAAGA+GGG 0.579056 6:-88380870 None:intergenic
TTGGTTCCATCAGCTTGTGA+AGG 0.581386 6:-88380308 None:intergenic
AATTCTAGTTAACAGAGGAT+GGG 0.581794 6:+88380214 MsG0680034485.01.T01:CDS
TTACATTTATGGCTTTCAAG+AGG 0.585665 6:+88381451 MsG0680034485.01.T01:CDS
GGAATCAGAGACGGCAGCAG+CGG 0.591224 6:-88377068 None:intergenic
TGTTGCTGGAAAATGATCCT+TGG 0.593240 6:-88381618 None:intergenic
CAGTGGAGCTTATGCCGGTG+CGG 0.598216 6:-88377030 None:intergenic
CAGCAGCGGAGCTGAATGGA+CGG 0.599068 6:-88377054 None:intergenic
CCATCAGCTTGTGAAGGTGA+AGG 0.600241 6:-88380302 None:intergenic
GGCTAAGACAGAGTAACAAG+AGG 0.601471 6:+88381472 MsG0680034485.01.T01:CDS
TCTTCCAATCTCAATTGCCA+AGG 0.602148 6:+88381601 MsG0680034485.01.T01:three_prime_UTR
GGAAGAAGAAAGTGGTGGGT+CGG 0.602196 6:-88377089 None:intergenic
GTCTGTAACACCTAACGAAG+TGG 0.603834 6:+88380675 MsG0680034485.01.T01:CDS
TTAAAATGTTGGAGTATCGA+GGG 0.604898 6:+88379317 MsG0680034485.01.T01:CDS
ATGTTAATATGTAGTTTAGG+TGG 0.606805 6:-88380924 None:intergenic
AACACCTAACGAAGTGGTCG+GGG 0.607807 6:+88380681 MsG0680034485.01.T01:CDS
GAATCGGAGGAAGAAGAAAG+TGG 0.607835 6:-88377097 None:intergenic
GTAACACCTAACGAAGTGGT+CGG 0.608874 6:+88380679 MsG0680034485.01.T01:CDS
TAGGTGTTACAGACGGGACC+TGG 0.609434 6:-88380666 None:intergenic
CCTGAAATGCTTCTTGAACG+TGG 0.609460 6:-88379469 None:intergenic
ACACTTGTGGAATGGAAATG+AGG 0.613462 6:+88381690 MsG0680034485.01.T01:three_prime_UTR
ATAGAACCACTGAGAAGACC+CGG 0.614508 6:-88380752 None:intergenic
ACTTCGTTAGGTGTTACAGA+CGG 0.614691 6:-88380673 None:intergenic
GTGCTTACCATTTGAATCGG+AGG 0.615520 6:-88377110 None:intergenic
ATGGAACCATTGAAATTCAG+TGG 0.619217 6:+88379352 MsG0680034485.01.T01:CDS
CTCCGCCGCCAGAATCCTTG+CGG 0.625176 6:+88376988 MsG0680034485.01.T01:CDS
ACCTAAACTACATATTAACA+TGG 0.626458 6:+88380926 MsG0680034485.01.T01:CDS
TGGTGGGTCGGAATCAGAGA+CGG 0.626870 6:-88377077 None:intergenic
CGGAGGAAGAAGAAAGTGGT+GGG 0.632975 6:-88377093 None:intergenic
GAGCTCCGCAAGGATTCTGG+CGG 0.633346 6:-88376993 None:intergenic
AAGGAAAAGCTTCTAAATGG+TGG 0.634466 6:+88377259 MsG0680034485.01.T01:intron
GGAGCTGAATGGACGGACAG+TGG 0.647696 6:-88377047 None:intergenic
TCGGAGGAAGAAGAAAGTGG+TGG 0.647709 6:-88377094 None:intergenic
AGATACGGCGGAGCTCCGCA+AGG 0.652776 6:-88377003 None:intergenic
ATGTAGTTTAGGTGGTCCTG+AGG 0.656016 6:-88380916 None:intergenic
ATGATCCCGGGTCTTCTCAG+TGG 0.657512 6:+88380746 MsG0680034485.01.T01:CDS
AAGCTGATGGAACCAAATCG+TGG 0.670751 6:+88380315 MsG0680034485.01.T01:CDS
TCTCCAATTCTAGTTAACAG+AGG 0.674448 6:+88380209 MsG0680034485.01.T01:CDS
TGGTGCATATCCATCAAGTG+AGG 0.687984 6:+88379372 MsG0680034485.01.T01:CDS
CTGATGGAACCAAATCGTGG+TGG 0.697330 6:+88380318 MsG0680034485.01.T01:CDS
TAGAACCACTGAGAAGACCC+GGG 0.697971 6:-88380751 None:intergenic
TAAAGAGTCTGTTATCAGTG+AGG 0.699472 6:+88380352 MsG0680034485.01.T01:CDS
CGGTGCGGGTCGAGATACGG+CGG 0.700693 6:-88377015 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATCTCTATAATTATATT+AGG + Chr6:88377579-88377598 MsG0680034485.01.T01:intron 10.0%
!!! AATATTACATCTTTTATTTT+AGG - Chr6:88381270-88381289 None:intergenic 10.0%
!!! ATGTTAATTGATTTTTTTTT+TGG + Chr6:88377225-88377244 MsG0680034485.01.T01:intron 10.0%
!!! CATTTTTTTTTTTTTAAACA+AGG - Chr6:88380415-88380434 None:intergenic 10.0%
!!! TAATTTTCTTAAATAATTAC+CGG - Chr6:88377680-88377699 None:intergenic 10.0%
!! AAAATGAATTGTTTGTATTT+GGG + Chr6:88381404-88381423 MsG0680034485.01.T01:intron 15.0%
!! AACCTTAACATTAATAAAAA+TGG + Chr6:88381364-88381383 MsG0680034485.01.T01:intron 15.0%
!! ATAGTAGTAAATTTAAAAGA+TGG - Chr6:88378889-88378908 None:intergenic 15.0%
!! ATTCAATTCATTATAACTAT+CGG + Chr6:88377388-88377407 MsG0680034485.01.T01:intron 15.0%
!! GAATAAAAAAAATTAGTGAA+AGG + Chr6:88381209-88381228 MsG0680034485.01.T01:intron 15.0%
!! TTAACATTAATAAAAATGGT+TGG + Chr6:88381368-88381387 MsG0680034485.01.T01:intron 15.0%
!!! AAAAAATGAACTTTTTCTTA+AGG - Chr6:88377200-88377219 None:intergenic 15.0%
!!! AAAAATGAACTTTTTCTTAA+GGG - Chr6:88377199-88377218 None:intergenic 15.0%
!!! AACCATTTTTATTAATGTTA+AGG - Chr6:88381369-88381388 None:intergenic 15.0%
!!! AACTATGTTTATATTGTTTT+TGG + Chr6:88378539-88378558 MsG0680034485.01.T01:intron 15.0%
!!! AACTTTTAAGTTTTTCATTT+TGG + Chr6:88379903-88379922 MsG0680034485.01.T01:intron 15.0%
!!! ATTAGTTTTTTTTTTTTTGG+TGG + Chr6:88377696-88377715 MsG0680034485.01.T01:intron 15.0%
!!! ATTGATTTTGATTATAAGAA+AGG + Chr6:88378062-88378081 MsG0680034485.01.T01:intron 15.0%
!!! TAATTGATTTTTTTTTTGGT+TGG + Chr6:88377229-88377248 MsG0680034485.01.T01:intron 15.0%
!!! TGTTGATATTTATTTTCTTT+TGG + Chr6:88381771-88381790 MsG0680034485.01.T01:three_prime_UTR 15.0%
!!! TTGATTTTGATTATAAGAAA+GGG + Chr6:88378063-88378082 MsG0680034485.01.T01:intron 15.0%
!! AATCAAATAATGAAGATTGA+CGG - Chr6:88378422-88378441 None:intergenic 20.0%
!! AATGTTACAGATTAAAATGT+TGG + Chr6:88379306-88379325 MsG0680034485.01.T01:intron 20.0%
!! ATATGAAAATTGAAGAAACT+CGG - Chr6:88380163-88380182 None:intergenic 20.0%
!! ATATGTAAACAAACAACTTA+TGG + Chr6:88379191-88379210 MsG0680034485.01.T01:intron 20.0%
!! CAAAATGAATTGTTTGTATT+TGG + Chr6:88381403-88381422 MsG0680034485.01.T01:intron 20.0%
!! GATAGTTATAATGAATTGAA+TGG - Chr6:88377389-88377408 None:intergenic 20.0%
!!! AATTTAGAAATTTTGATGCT+AGG + Chr6:88381733-88381752 MsG0680034485.01.T01:three_prime_UTR 20.0%
!!! ATTTAGAAATTTTGATGCTA+GGG + Chr6:88381734-88381753 MsG0680034485.01.T01:three_prime_UTR 20.0%
!!! CGCTTTTAATAAAAAAATGT+TGG + Chr6:88377761-88377780 MsG0680034485.01.T01:intron 20.0%
!!! TAAAATTAGTGTTGAATTAG+AGG + Chr6:88381830-88381849 MsG0680034485.01.T01:three_prime_UTR 20.0%
!!! TAAGTTTTTCATTTTGGTTA+AGG + Chr6:88379909-88379928 MsG0680034485.01.T01:intron 20.0%
!!! TGATTTTGATTATAAGAAAG+GGG + Chr6:88378064-88378083 MsG0680034485.01.T01:intron 20.0%
! AACACTTAAACTAAGACATT+TGG + Chr6:88379650-88379669 MsG0680034485.01.T01:intron 25.0%
! AATGAATTGAATGGCAAAAA+TGG - Chr6:88377380-88377399 None:intergenic 25.0%
! ACATGATTTATTGCAAATTG+CGG + Chr6:88378216-88378235 MsG0680034485.01.T01:intron 25.0%
! ACCATGTTAATATGTAGTTT+AGG - Chr6:88380930-88380949 None:intergenic 25.0%
! ACCTAAACTACATATTAACA+TGG + Chr6:88380926-88380945 MsG0680034485.01.T01:CDS 25.0%
! AGAATTATGTCAGTGAAAAT+TGG + Chr6:88378113-88378132 MsG0680034485.01.T01:intron 25.0%
! ATATCATATGTCTATCTCAT+TGG + Chr6:88381562-88381581 MsG0680034485.01.T01:three_prime_UTR 25.0%
! ATCAAATAATGAAGATTGAC+GGG - Chr6:88378421-88378440 None:intergenic 25.0%
! ATGTTAATATGTAGTTTAGG+TGG - Chr6:88380927-88380946 None:intergenic 25.0%
! CAGAGTTCAAATATATTAAG+TGG - Chr6:88378323-88378342 None:intergenic 25.0%
! CTTAATGCATCAAAAACTTA+TGG - Chr6:88378838-88378857 None:intergenic 25.0%
! GATAAAAAATCAATCTACGT+GGG + Chr6:88379445-88379464 MsG0680034485.01.T01:CDS 25.0%
! GTGAAAATTGGATACAAATT+TGG + Chr6:88378125-88378144 MsG0680034485.01.T01:intron 25.0%
! TAATCTGTAACATTGTAAGA+TGG - Chr6:88379300-88379319 None:intergenic 25.0%
! TATCTAGATCACTAACATAA+CGG - Chr6:88378811-88378830 None:intergenic 25.0%
! TGATAAAAAATCAATCTACG+TGG + Chr6:88379444-88379463 MsG0680034485.01.T01:CDS 25.0%
! TTAAACAAGGAATGATATGA+TGG - Chr6:88380402-88380421 None:intergenic 25.0%
!! AAAAAATTTTGTGTGCCTTT+TGG + Chr6:88379047-88379066 MsG0680034485.01.T01:intron 25.0%
!! CATAAGTTTTTGATGCATTA+AGG + Chr6:88378836-88378855 MsG0680034485.01.T01:intron 25.0%
!!! AAATTTTGATTCTGAGAAAG+GGG + Chr6:88377816-88377835 MsG0680034485.01.T01:intron 25.0%
!!! AATTTTTTGTTCTGTGTTTG+TGG + Chr6:88378592-88378611 MsG0680034485.01.T01:intron 25.0%
!!! AGATTCTTTGGAATTTAGAA+AGG + Chr6:88379399-88379418 MsG0680034485.01.T01:CDS 25.0%
!!! AGCAAATTTGTTACTGTTAT+AGG + Chr6:88381499-88381518 MsG0680034485.01.T01:exon 25.0%
!!! ATGATTTTGATTTACCTATC+AGG - Chr6:88379550-88379569 None:intergenic 25.0%
!!! ATTTTGATTATAAGAAAGGG+GGG + Chr6:88378066-88378085 MsG0680034485.01.T01:intron 25.0%
!!! GAAATTTTGATTCTGAGAAA+GGG + Chr6:88377815-88377834 MsG0680034485.01.T01:intron 25.0%
!!! GATTTTGATTATAAGAAAGG+GGG + Chr6:88378065-88378084 MsG0680034485.01.T01:intron 25.0%
!!! TGAAATTTTGATTCTGAGAA+AGG + Chr6:88377814-88377833 MsG0680034485.01.T01:intron 25.0%
!!! TTGGAAAGAAAAGTTTTTAG+AGG + Chr6:88380247-88380266 MsG0680034485.01.T01:CDS 25.0%
!!! TTTAGAAATTTTGATGCTAG+GGG + Chr6:88381735-88381754 MsG0680034485.01.T01:three_prime_UTR 25.0%
!!! TTTTTTATTAAAAGCGTGCT+CGG - Chr6:88377757-88377776 None:intergenic 25.0%
!!! TTTTTTGGTTGGTTTATGAA+AGG + Chr6:88377240-88377259 MsG0680034485.01.T01:intron 25.0%
AAATTCTCAGTCATAAGTAG+TGG - Chr6:88381331-88381350 None:intergenic 30.0%
AAATTGAGCTCTTTACCAAA+AGG - Chr6:88379065-88379084 None:intergenic 30.0%
AACAATCAACATCAGAAAGT+TGG - Chr6:88379845-88379864 None:intergenic 30.0%
AACACCTATGATCGAAAATT+CGG + Chr6:88377995-88378014 MsG0680034485.01.T01:intron 30.0%
AATGACTTAGTCTACAAACT+TGG + Chr6:88378628-88378647 MsG0680034485.01.T01:intron 30.0%
AATTTGATGAATTCCTCATG+TGG + Chr6:88377144-88377163 MsG0680034485.01.T01:intron 30.0%
AGATTAATTCTATGCATCGA+CGG - Chr6:88377566-88377585 None:intergenic 30.0%
AGTTTCTCACTTCATCAATA+TGG - Chr6:88378388-88378407 None:intergenic 30.0%
ATACAACCAACTCAAAAACA+TGG - Chr6:88380132-88380151 None:intergenic 30.0%
ATTCATGATATCTCCGTAAA+TGG - Chr6:88379777-88379796 None:intergenic 30.0%
ATTGTGTTTGCATACTATGA+TGG + Chr6:88379728-88379747 MsG0680034485.01.T01:intron 30.0%
ATTTCAGGAGTTACTGAAAA+TGG + Chr6:88379484-88379503 MsG0680034485.01.T01:CDS 30.0%
ATTTGATGAATTCCTCATGT+GGG + Chr6:88377145-88377164 MsG0680034485.01.T01:intron 30.0%
CAGAAATATTGTCGTTACTA+AGG - Chr6:88378465-88378484 None:intergenic 30.0%
CTATAAGTATAAGCATGTGT+CGG - Chr6:88381120-88381139 None:intergenic 30.0%
GAAAATTGGTTGACATTTGT+CGG + Chr6:88377728-88377747 MsG0680034485.01.T01:intron 30.0%
GATATTTGTGGAGCTAATTT+AGG + Chr6:88377479-88377498 MsG0680034485.01.T01:intron 30.0%
GATTGTTAGAAGAGAAGATA+AGG + Chr6:88377326-88377345 MsG0680034485.01.T01:CDS 30.0%
GCAATGTTTCAAAATCAAAC+CGG - Chr6:88380617-88380636 None:intergenic 30.0%
GGTGGTGAATTTAAGAAAAT+TGG + Chr6:88377714-88377733 MsG0680034485.01.T01:intron 30.0%
TACAGATCCTTATTCTTTCT+TGG + Chr6:88381021-88381040 MsG0680034485.01.T01:intron 30.0%
TAGTGGAAAATATGTGAATG+CGG + Chr6:88378504-88378523 MsG0680034485.01.T01:intron 30.0%
TCATTAGCCAAGAAAGAATA+AGG - Chr6:88381031-88381050 None:intergenic 30.0%
TCATTGTATTGTTCTGTTTC+TGG + Chr6:88381289-88381308 MsG0680034485.01.T01:intron 30.0%
TCTTAAGTCTTAACCAATCA+AGG + Chr6:88378937-88378956 MsG0680034485.01.T01:intron 30.0%
TGAAAGGAAAAGCTTCTAAA+TGG + Chr6:88377256-88377275 MsG0680034485.01.T01:intron 30.0%
TGTTTACATATTATTCTGCC+AGG - Chr6:88379182-88379201 None:intergenic 30.0%
TTACATTTATGGCTTTCAAG+AGG + Chr6:88381451-88381470 MsG0680034485.01.T01:CDS 30.0%
TTCTCGAATTTAAAAGGCTT+TGG + Chr6:88379979-88379998 MsG0680034485.01.T01:intron 30.0%
TTTAAGCCATCTACATATCA+AGG - Chr6:88379012-88379031 None:intergenic 30.0%
! AAAACTTTTCTTTCCAACTG+CGG - Chr6:88380244-88380263 None:intergenic 30.0%
! AATTCTAGTTAACAGAGGAT+GGG + Chr6:88380214-88380233 MsG0680034485.01.T01:CDS 30.0%
! ATTTTCCACTAGATCTGAAT+TGG - Chr6:88378495-88378514 None:intergenic 30.0%
! GATGTTTTCATAATCTATCC+TGG + Chr6:88379161-88379180 MsG0680034485.01.T01:intron 30.0%
! TATGATGGAAAAATGACTAG+AGG - Chr6:88380387-88380406 None:intergenic 30.0%
! TCAACATAGACAGTATTTTC+TGG - Chr6:88380814-88380833 None:intergenic 30.0%
! TGGATTCTCTTAAAAGTACA+AGG - Chr6:88379825-88379844 None:intergenic 30.0%
!! AAAAAATGTTGGTGCTACAA+AGG + Chr6:88377772-88377791 MsG0680034485.01.T01:intron 30.0%
!! ATTAAAATGTTGGAGTATCG+AGG + Chr6:88379316-88379335 MsG0680034485.01.T01:CDS 30.0%
!! CCTAGTTTTTGTAAAAGATG+GGG + Chr6:88381177-88381196 MsG0680034485.01.T01:intron 30.0%
!! GCCTAGTTTTTGTAAAAGAT+GGG + Chr6:88381176-88381195 MsG0680034485.01.T01:intron 30.0%
!! TAAGTAGACCATTTTAGAGA+AGG - Chr6:88379693-88379712 None:intergenic 30.0%
!! TTAAAATGTTGGAGTATCGA+GGG + Chr6:88379317-88379336 MsG0680034485.01.T01:CDS 30.0%
!! TTGAATTAGAGGTGTTAGAT+TGG + Chr6:88381841-88381860 MsG0680034485.01.T01:three_prime_UTR 30.0%
!!! AATTTTGATTCTGAGAAAGG+GGG + Chr6:88377817-88377836 MsG0680034485.01.T01:intron 30.0%
AAAAAGAGAGAGGGTTTATG+GGG - Chr6:88376902-88376921 None:intergenic 35.0%
AAGGAAAAGCTTCTAAATGG+TGG + Chr6:88377259-88377278 MsG0680034485.01.T01:intron 35.0%
AAGTGAGGAGTTAGATTCTT+TGG + Chr6:88379387-88379406 MsG0680034485.01.T01:CDS 35.0%
AGAAAAAGAGAGAGGGTTTA+TGG - Chr6:88376904-88376923 None:intergenic 35.0%
ATGGAACCATTGAAATTCAG+TGG + Chr6:88379352-88379371 MsG0680034485.01.T01:CDS 35.0%
ATTTAGAAAGGTTGTCTGCA+AGG + Chr6:88379411-88379430 MsG0680034485.01.T01:CDS 35.0%
CATCCTCTGTTAACTAGAAT+TGG - Chr6:88380215-88380234 None:intergenic 35.0%
CATTAACATCCTTAGGAAGA+GGG - Chr6:88380873-88380892 None:intergenic 35.0%
CCATCTACATATCAAGGAAA+CGG - Chr6:88379006-88379025 None:intergenic 35.0%
CGACATAGCATAGTGTAATT+TGG + Chr6:88378170-88378189 MsG0680034485.01.T01:intron 35.0%
CGCAACATAAACTCCATTTA+CGG + Chr6:88379761-88379780 MsG0680034485.01.T01:intron 35.0%
GAAAAAGAGAGAGGGTTTAT+GGG - Chr6:88376903-88376922 None:intergenic 35.0%
GCTGGATTCTCGAATTTAAA+AGG + Chr6:88379973-88379992 MsG0680034485.01.T01:intron 35.0%
GTGTTAGATTGGAGCAATAA+GGG + Chr6:88381852-88381871 MsG0680034485.01.T01:three_prime_UTR 35.0%
TAAAGAGTCTGTTATCAGTG+AGG + Chr6:88380352-88380371 MsG0680034485.01.T01:CDS 35.0%
TAAGGATTATTCCCTTCTTG+CGG + Chr6:88379927-88379946 MsG0680034485.01.T01:intron 35.0%
TATCCACTTAAATCATGCTG+AGG + Chr6:88377454-88377473 MsG0680034485.01.T01:intron 35.0%
TATCTATGTTTCAGTTTCGC+TGG + Chr6:88379955-88379974 MsG0680034485.01.T01:intron 35.0%
TATGCACCACTGAATTTCAA+TGG - Chr6:88379361-88379380 None:intergenic 35.0%
TCAAAACATTGCTCGTTTAC+AGG + Chr6:88380642-88380661 MsG0680034485.01.T01:intron 35.0%
TGACTAGAAATCTCCTTGAT+TGG - Chr6:88378953-88378972 None:intergenic 35.0%
TGAGTGCTTACCATTTGAAT+CGG - Chr6:88377116-88377135 None:intergenic 35.0%
TGGTCTACTTACTATGTTGA+CGG + Chr6:88379702-88379721 MsG0680034485.01.T01:intron 35.0%
TGTTATAACACCTCTTATGC+CGG + Chr6:88379513-88379532 MsG0680034485.01.T01:CDS 35.0%
TGTTTCAAAATCAAACCGGA+TGG - Chr6:88380613-88380632 None:intergenic 35.0%
TTCTGCAGCAGTTACATTTA+TGG + Chr6:88381440-88381459 MsG0680034485.01.T01:CDS 35.0%
TTGCAGGAACAAATATGCTT+GGG - Chr6:88380726-88380745 None:intergenic 35.0%
TTTAGAAAGGTTGTCTGCAA+GGG + Chr6:88379412-88379431 MsG0680034485.01.T01:CDS 35.0%
TTTGCAGGAACAAATATGCT+TGG - Chr6:88380727-88380746 None:intergenic 35.0%
! AAACTTTTCTTTCCAACTGC+GGG - Chr6:88380243-88380262 None:intergenic 35.0%
! CAATTCTAGTTAACAGAGGA+TGG + Chr6:88380213-88380232 MsG0680034485.01.T01:CDS 35.0%
! CATAGACAGTATTTTCTGGA+AGG - Chr6:88380810-88380829 None:intergenic 35.0%
! CCCCATCTTTTACAAAAACT+AGG - Chr6:88381180-88381199 None:intergenic 35.0%
! GAATTGTTTGTATTTGGGAC+AGG + Chr6:88381409-88381428 MsG0680034485.01.T01:intron 35.0%
! TACGTAGACCTTCTCTAAAA+TGG + Chr6:88379682-88379701 MsG0680034485.01.T01:intron 35.0%
! TCTCCAATTCTAGTTAACAG+AGG + Chr6:88380209-88380228 MsG0680034485.01.T01:CDS 35.0%
!! AAATTTTGATGCTAGGGGAA+TGG + Chr6:88381740-88381759 MsG0680034485.01.T01:three_prime_UTR 35.0%
!! CAAATTTGGTGCATTGTTAG+CGG + Chr6:88378139-88378158 MsG0680034485.01.T01:intron 35.0%
!! CGCCTAGTTTTTGTAAAAGA+TGG + Chr6:88381175-88381194 MsG0680034485.01.T01:intron 35.0%
!! TCAAGGAGATTTCTAGTCAT+AGG + Chr6:88378954-88378973 MsG0680034485.01.T01:intron 35.0%
!! TCGAAAATTCGGTGCTATTT+AGG + Chr6:88378006-88378025 MsG0680034485.01.T01:intron 35.0%
!! TGTATTGTTCTGTTTCTGGA+GGG + Chr6:88381293-88381312 MsG0680034485.01.T01:intron 35.0%
!! TTGTATTGTTCTGTTTCTGG+AGG + Chr6:88381292-88381311 MsG0680034485.01.T01:intron 35.0%
!!! TCACTTCCATGTTTTTGAGT+TGG + Chr6:88380123-88380142 MsG0680034485.01.T01:intron 35.0%
AAATGGTGGTTGTATCTACC+TGG + Chr6:88377273-88377292 MsG0680034485.01.T01:CDS 40.0%
ACACTTGTGGAATGGAAATG+AGG + Chr6:88381690-88381709 MsG0680034485.01.T01:three_prime_UTR 40.0%
ACTTGATTAGCACATGTTGC+TGG - Chr6:88381635-88381654 None:intergenic 40.0%
AGCATCCAATCAACTCACAT+CGG - Chr6:88377524-88377543 None:intergenic 40.0%
ATAGATATTGAGCCGCAAGA+AGG - Chr6:88379942-88379961 None:intergenic 40.0%
ATATTCGGCTACAGTAGAGA+AGG - Chr6:88378738-88378757 None:intergenic 40.0%
ATTCACATTCACTGCGATAC+TGG + Chr6:88378439-88378458 MsG0680034485.01.T01:intron 40.0%
ATTGCAAATTGCGGCTAAAG+CGG + Chr6:88378225-88378244 MsG0680034485.01.T01:intron 40.0%
CACTTTAGTGTTGTAGCTAG+CGG + Chr6:88378248-88378267 MsG0680034485.01.T01:intron 40.0%
CATGCTGAGGTAGATATTTG+TGG + Chr6:88377467-88377486 MsG0680034485.01.T01:intron 40.0%
CCACAAAAACACTTGTGGAA+TGG + Chr6:88381682-88381701 MsG0680034485.01.T01:three_prime_UTR 40.0%
CCGTTTCCTTGATATGTAGA+TGG + Chr6:88379003-88379022 MsG0680034485.01.T01:intron 40.0%
CGATAATCAAAGAGTGAACG+TGG + Chr6:88379122-88379141 MsG0680034485.01.T01:intron 40.0%
CTACCTCAGCATGATTTAAG+TGG - Chr6:88377460-88377479 None:intergenic 40.0%
CTATCAGGATGATCATGAAC+CGG - Chr6:88379535-88379554 None:intergenic 40.0%
GAATCTAACTCCTCACTTGA+TGG - Chr6:88379385-88379404 None:intergenic 40.0%
GAATGGCGAGTAAGAGAAAA+GGG - Chr6:88376949-88376968 None:intergenic 40.0%
GAGCTCAATTTAGCGCTTAT+TGG + Chr6:88379074-88379093 MsG0680034485.01.T01:intron 40.0%
GATTGGATGCTCGTGTAAAA+AGG + Chr6:88377533-88377552 MsG0680034485.01.T01:intron 40.0%
GCATTAACATCCTTAGGAAG+AGG - Chr6:88380874-88380893 None:intergenic 40.0%
GGTGTTAGATTGGAGCAATA+AGG + Chr6:88381851-88381870 MsG0680034485.01.T01:three_prime_UTR 40.0%
TAATCCTTACCCTCTTCCTA+AGG + Chr6:88380861-88380880 MsG0680034485.01.T01:CDS 40.0%
TAGATATTGAGCCGCAAGAA+GGG - Chr6:88379941-88379960 None:intergenic 40.0%
TCACCATCACTTCAGATTGA+AGG + Chr6:88381059-88381078 MsG0680034485.01.T01:intron 40.0%
TCTACATATCAAGGAAACGG+AGG - Chr6:88379003-88379022 None:intergenic 40.0%
TCTTCCAATCTCAATTGCCA+AGG + Chr6:88381601-88381620 MsG0680034485.01.T01:three_prime_UTR 40.0%
TCTTCTTCCTCCGATTCAAA+TGG + Chr6:88377103-88377122 MsG0680034485.01.T01:CDS 40.0%
TGATCCTTGGCAATTGAGAT+TGG - Chr6:88381608-88381627 None:intergenic 40.0%
TGTTGCTGGAAAATGATCCT+TGG - Chr6:88381621-88381640 None:intergenic 40.0%
TTACCAATTGCTTGCTTTGC+AGG + Chr6:88380098-88380117 MsG0680034485.01.T01:intron 40.0%
TTCCACCACAAAAACACTTG+TGG + Chr6:88381677-88381696 MsG0680034485.01.T01:three_prime_UTR 40.0%
TTTGTTCCTGCAAATGATCC+CGG + Chr6:88380733-88380752 MsG0680034485.01.T01:CDS 40.0%
TTTGTTCTGTGTTTGTGGTG+AGG + Chr6:88378597-88378616 MsG0680034485.01.T01:intron 40.0%
! AACTTTTCTTTCCAACTGCG+GGG - Chr6:88380242-88380261 None:intergenic 40.0%
! ACTTCGTTAGGTGTTACAGA+CGG - Chr6:88380676-88380695 None:intergenic 40.0%
! AGTGGCAGTGTTTTCAATCA+CGG - Chr6:88378305-88378324 None:intergenic 40.0%
! GAGCAATTGCATTTGGTCTT+GGG + Chr6:88377295-88377314 MsG0680034485.01.T01:CDS 40.0%
!! AGCACCGAATTTTCGATCAT+AGG - Chr6:88378002-88378021 None:intergenic 40.0%
!! CCATTCCACAAGTGTTTTTG+TGG - Chr6:88381685-88381704 None:intergenic 40.0%
!! TTCCACAAGTGTTTTTGTGG+TGG - Chr6:88381682-88381701 None:intergenic 40.0%
!!! TGATGTGCTGTGCTATTTTG+CGG + Chr6:88378674-88378693 MsG0680034485.01.T01:intron 40.0%
AAACAAGAACGACCCACATG+AGG - Chr6:88377160-88377179 None:intergenic 45.0%
AACCAAACTAGACAGCGAAC+CGG + Chr6:88380469-88380488 MsG0680034485.01.T01:intron 45.0%
AAGCCTGCAAAGCAAGCAAT+TGG - Chr6:88380104-88380123 None:intergenic 45.0%
AAGCTGATGGAACCAAATCG+TGG + Chr6:88380315-88380334 MsG0680034485.01.T01:CDS 45.0%
ACACCAACACATGTTGGACA+TGG - Chr6:88381091-88381110 None:intergenic 45.0%
ACATATCAAGGAAACGGAGG+AGG - Chr6:88379000-88379019 None:intergenic 45.0%
ACATCCTTAGGAAGAGGGTA+AGG - Chr6:88380868-88380887 None:intergenic 45.0%
AGACCAAATGCAATTGCTCC+AGG - Chr6:88377294-88377313 None:intergenic 45.0%
ATAGAACCACTGAGAAGACC+CGG - Chr6:88380755-88380774 None:intergenic 45.0%
ATGTAGTTTAGGTGGTCCTG+AGG - Chr6:88380919-88380938 None:intergenic 45.0%
CCAAAATCTCCACCACGATT+TGG - Chr6:88380330-88380349 None:intergenic 45.0%
CCATGACTCAAAGATATCGC+CGG - Chr6:88380491-88380510 None:intergenic 45.0%
CCTGAAATGCTTCTTGAACG+TGG - Chr6:88379472-88379491 None:intergenic 45.0%
CGCAGAGAGAAAAAGAGAGA+GGG - Chr6:88376911-88376930 None:intergenic 45.0%
CGGTTCATGATCATCCTGAT+AGG + Chr6:88379533-88379552 MsG0680034485.01.T01:CDS 45.0%
CTACCTGGAGCAATTGCATT+TGG + Chr6:88377288-88377307 MsG0680034485.01.T01:CDS 45.0%
CTAGTCATAGGCTCATGTTG+TGG + Chr6:88378966-88378985 MsG0680034485.01.T01:intron 45.0%
CTGCTTCAAACCACTGAACT+AGG + Chr6:88380516-88380535 MsG0680034485.01.T01:intron 45.0%
GAATCGGAGGAAGAAGAAAG+TGG - Chr6:88377100-88377119 None:intergenic 45.0%
GAGTAAGAGAAAAGGGAGAG+AGG - Chr6:88376942-88376961 None:intergenic 45.0%
GGAAGAGGGTAAGGATTACT+TGG - Chr6:88380859-88380878 None:intergenic 45.0%
GGAATGGCGAGTAAGAGAAA+AGG - Chr6:88376950-88376969 None:intergenic 45.0%
GGAGCAATTGCATTTGGTCT+TGG + Chr6:88377294-88377313 MsG0680034485.01.T01:CDS 45.0%
GGCTAAGACAGAGTAACAAG+AGG + Chr6:88381472-88381491 MsG0680034485.01.T01:CDS 45.0%
GGGGAAGAGAGATAGAAAGA+AGG + Chr6:88378085-88378104 MsG0680034485.01.T01:intron 45.0%
GTAACACCTAACGAAGTGGT+CGG + Chr6:88380679-88380698 MsG0680034485.01.T01:CDS 45.0%
GTCTGTAACACCTAACGAAG+TGG + Chr6:88380675-88380694 MsG0680034485.01.T01:CDS 45.0%
GTGCTTACCATTTGAATCGG+AGG - Chr6:88377113-88377132 None:intergenic 45.0%
GTTCCATGTCCAACATGTGT+TGG + Chr6:88381085-88381104 MsG0680034485.01.T01:intron 45.0%
TAACACCTAACGAAGTGGTC+GGG + Chr6:88380680-88380699 MsG0680034485.01.T01:CDS 45.0%
TCACGGGTCACATGAAATAG+TGG - Chr6:88378288-88378307 None:intergenic 45.0%
TCCACTAGATCTGAATTGGC+TGG - Chr6:88378491-88378510 None:intergenic 45.0%
TCCAGCCAATTCAGATCTAG+TGG + Chr6:88378487-88378506 MsG0680034485.01.T01:intron 45.0%
TCGACATGTCAGTTTCGTGT+TGG - Chr6:88377655-88377674 None:intergenic 45.0%
TCGCAGAGAGAAAAAGAGAG+AGG - Chr6:88376912-88376931 None:intergenic 45.0%
TGATCATGAACCGGCATAAG+AGG - Chr6:88379526-88379545 None:intergenic 45.0%
TGGTGCATATCCATCAAGTG+AGG + Chr6:88379372-88379391 MsG0680034485.01.T01:CDS 45.0%
TGTCCAACACCAACACATGT+TGG - Chr6:88381097-88381116 None:intergenic 45.0%
TTGGTTCCATCAGCTTGTGA+AGG - Chr6:88380311-88380330 None:intergenic 45.0%
TTGTTCCTGCAAATGATCCC+GGG + Chr6:88380734-88380753 MsG0680034485.01.T01:CDS 45.0%
! ACGCCTTCAATCTGAAGTGA+TGG - Chr6:88381065-88381084 None:intergenic 45.0%
! CTTCGTTAGGTGTTACAGAC+GGG - Chr6:88380675-88380694 None:intergenic 45.0%
! GTGGCAGTGTTTTCAATCAC+GGG - Chr6:88378304-88378323 None:intergenic 45.0%
! TGTCCAACATGTGTTGGTGT+TGG + Chr6:88381091-88381110 MsG0680034485.01.T01:intron 45.0%
! TTGATTCTGAGAAAGGGGGA+AGG + Chr6:88377821-88377840 MsG0680034485.01.T01:intron 45.0%
!! CCAAATCGTGGTGGAGATTT+TGG + Chr6:88380327-88380346 MsG0680034485.01.T01:CDS 45.0%
!! CCACGTTCAAGAAGCATTTC+AGG + Chr6:88379469-88379488 MsG0680034485.01.T01:CDS 45.0%
!! TGACACCGATGTGAGTTGAT+TGG + Chr6:88377516-88377535 MsG0680034485.01.T01:intron 45.0%
!! TTGCATTTGGTCTTGGGAGT+TGG + Chr6:88377301-88377320 MsG0680034485.01.T01:CDS 45.0%
!! AAATAAATAATAAACATATT+CGG - Chr6:88378753-88378772 None:intergenic 5.0%
!!! AAAATTAGTTTTTTTTTTTT+TGG + Chr6:88377693-88377712 MsG0680034485.01.T01:intron 5.0%
AACACCTAACGAAGTGGTCG+GGG + Chr6:88380681-88380700 MsG0680034485.01.T01:CDS 50.0%
AACCAACACTGTCTGCGGAT+CGG - Chr6:88380571-88380590 None:intergenic 50.0%
CATTGCTCGTTTACAGGACC+AGG + Chr6:88380648-88380667 MsG0680034485.01.T01:intron 50.0%
CCATCAGCTTGTGAAGGTGA+AGG - Chr6:88380305-88380324 None:intergenic 50.0%
CCGGCGATATCTTTGAGTCA+TGG + Chr6:88380488-88380507 MsG0680034485.01.T01:intron 50.0%
CCTTCACCTTCACAAGCTGA+TGG + Chr6:88380302-88380321 MsG0680034485.01.T01:CDS 50.0%
CGAAACTGACATGTCGACAC+CGG + Chr6:88377658-88377677 MsG0680034485.01.T01:intron 50.0%
CGGAGGAAGAAGAAAGTGGT+GGG - Chr6:88377096-88377115 None:intergenic 50.0%
CTGATGGAACCAAATCGTGG+TGG + Chr6:88380318-88380337 MsG0680034485.01.T01:CDS 50.0%
CTGCGGATCGGTTATTTGAG+CGG - Chr6:88380559-88380578 None:intergenic 50.0%
CTTCAGCTGGTTGAACCATC+CGG + Chr6:88380595-88380614 MsG0680034485.01.T01:intron 50.0%
GCAGTTTCGTCCTAGTTCAG+TGG - Chr6:88380529-88380548 None:intergenic 50.0%
GCTTGTGAAGGTGAAGGAAG+TGG - Chr6:88380299-88380318 None:intergenic 50.0%
GTGTGAACCAACACTGTCTG+CGG - Chr6:88380576-88380595 None:intergenic 50.0%
TAGAACCACTGAGAAGACCC+GGG - Chr6:88380754-88380773 None:intergenic 50.0%
TCGAGGGAAGAGGTTGCAAA+TGG + Chr6:88379333-88379352 MsG0680034485.01.T01:CDS 50.0%
TCGGAGGAAGAAGAAAGTGG+TGG - Chr6:88377097-88377116 None:intergenic 50.0%
! TTTCTGGAAGGCCGCAAGAT+CGG - Chr6:88380798-88380817 None:intergenic 50.0%
!! GGAAGAAGAAAGTGGTGGGT+CGG - Chr6:88377092-88377111 None:intergenic 50.0%
!! GTGTTGGTTCACACTTCAGC+TGG + Chr6:88380582-88380601 MsG0680034485.01.T01:intron 50.0%
!! TGTTGGAGTATCGAGGGAAG+AGG + Chr6:88379323-88379342 MsG0680034485.01.T01:CDS 50.0%
AACCGATCCGCAGACAGTGT+TGG + Chr6:88380566-88380585 MsG0680034485.01.T01:intron 55.0%
ACGGACAGTGGAGCTTATGC+CGG - Chr6:88377038-88377057 None:intergenic 55.0%
ACTACCCCGACCACTTCGTT+AGG - Chr6:88380688-88380707 None:intergenic 55.0%
ATGATCCCGGGTCTTCTCAG+TGG + Chr6:88380746-88380765 MsG0680034485.01.T01:CDS 55.0%
CCTAGCATTGCCCGATCTTG+CGG + Chr6:88380784-88380803 MsG0680034485.01.T01:CDS 55.0%
GAAGACCCGGGATCATTTGC+AGG - Chr6:88380742-88380761 None:intergenic 55.0%
! GAGGTGGATGGTGGCATTAG+GGG - Chr6:88376971-88376990 None:intergenic 55.0%
! GGAGGTGGATGGTGGCATTA+GGG - Chr6:88376972-88376991 None:intergenic 55.0%
! GGATGGTGGCATTAGGGGAA+TGG - Chr6:88376966-88376985 None:intergenic 55.0%
! TAGGTGTTACAGACGGGACC+TGG - Chr6:88380669-88380688 None:intergenic 55.0%
! TCGAAGTTCGGTGATGCCTC+AGG + Chr6:88380900-88380919 MsG0680034485.01.T01:CDS 55.0%
! TGGTGGGTCGGAATCAGAGA+CGG - Chr6:88377080-88377099 None:intergenic 55.0%
! TTCTGGAAGGCCGCAAGATC+GGG - Chr6:88380797-88380816 None:intergenic 55.0%
!! TGTCAGCGTCGTGCTGGTTT+CGG - Chr6:88377920-88377939 None:intergenic 55.0%
AGTGGAGCTTATGCCGGTGC+GGG - Chr6:88377032-88377051 None:intergenic 60.0%
CAGCAGCGGAGCTGAATGGA+CGG - Chr6:88377057-88377076 None:intergenic 60.0%
CAGTGGAGCTTATGCCGGTG+CGG - Chr6:88377033-88377052 None:intergenic 60.0%
CCGCAAGATCGGGCAATGCT+AGG - Chr6:88380787-88380806 None:intergenic 60.0%
CGACGCTGACAAGTCGACAC+TGG + Chr6:88377929-88377948 MsG0680034485.01.T01:intron 60.0%
GAAGTGGTCGGGGTAGTTCG+CGG + Chr6:88380691-88380710 MsG0680034485.01.T01:CDS 60.0%
GAGCTCCGCAAGGATTCTGG+CGG - Chr6:88376996-88377015 None:intergenic 60.0%
GGAATCAGAGACGGCAGCAG+CGG - Chr6:88377071-88377090 None:intergenic 60.0%
GGAGCTGAATGGACGGACAG+TGG - Chr6:88377050-88377069 None:intergenic 60.0%
! CGGAGGTGGATGGTGGCATT+AGG - Chr6:88376973-88376992 None:intergenic 60.0%
! TCGACTTGTCAGCGTCGTGC+TGG - Chr6:88377926-88377945 None:intergenic 60.0%
!! CGCCGGTTCGCTGTCTAGTT+TGG - Chr6:88380474-88380493 None:intergenic 60.0%
AAGGATTCTGGCGGCGGAGG+TGG - Chr6:88376987-88377006 None:intergenic 65.0%
ACGGCAGCAGCGGAGCTGAA+TGG - Chr6:88377061-88377080 None:intergenic 65.0%
AGATACGGCGGAGCTCCGCA+AGG - Chr6:88377006-88377025 None:intergenic 65.0%
ATTCTGGCGGCGGAGGTGGA+TGG - Chr6:88376983-88377002 None:intergenic 65.0%
CTCCGCAAGGATTCTGGCGG+CGG - Chr6:88376993-88377012 None:intergenic 65.0%
CTCCGCCGCCAGAATCCTTG+CGG + Chr6:88376988-88377007 MsG0680034485.01.T01:CDS 65.0%
GCGGAGCTCCGCAAGGATTC+TGG - Chr6:88376999-88377018 None:intergenic 65.0%
TGCCGGTGCGGGTCGAGATA+CGG - Chr6:88377021-88377040 None:intergenic 65.0%
! GAGGATGGGTTCCCCGCAGT+TGG + Chr6:88380228-88380247 MsG0680034485.01.T01:CDS 65.0%
CGCAAGGATTCTGGCGGCGG+AGG - Chr6:88376990-88377009 None:intergenic 70.0%
CGCCGTATCTCGACCCGCAC+CGG + Chr6:88377016-88377035 MsG0680034485.01.T01:CDS 70.0%
CGGTGCGGGTCGAGATACGG+CGG - Chr6:88377018-88377037 None:intergenic 70.0%
CTGGCGGCGGAGGTGGATGG+TGG - Chr6:88376980-88376999 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr6 gene 88376898 88381886 88376898 ID=MsG0680034485.01;Name=MsG0680034485.01
Chr6 mRNA 88376898 88381886 88376898 ID=MsG0680034485.01.T01;Parent=MsG0680034485.01;Name=MsG0680034485.01.T01;_AED=0.36;_eAED=0.36;_QI=76|1|1|1|1|1|6|386|333
Chr6 exon 88376898 88377124 88376898 ID=MsG0680034485.01.T01:exon:13571;Parent=MsG0680034485.01.T01
Chr6 exon 88377262 88377347 88377262 ID=MsG0680034485.01.T01:exon:13572;Parent=MsG0680034485.01.T01
Chr6 exon 88379316 88379554 88379316 ID=MsG0680034485.01.T01:exon:13573;Parent=MsG0680034485.01.T01
Chr6 exon 88380202 88380373 88380202 ID=MsG0680034485.01.T01:exon:13574;Parent=MsG0680034485.01.T01
Chr6 exon 88380664 88380947 88380664 ID=MsG0680034485.01.T01:exon:13575;Parent=MsG0680034485.01.T01
Chr6 exon 88381431 88381886 88381431 ID=MsG0680034485.01.T01:exon:13576;Parent=MsG0680034485.01.T01
Chr6 five_prime_UTR 88376898 88376973 88376898 ID=MsG0680034485.01.T01:five_prime_utr;Parent=MsG0680034485.01.T01
Chr6 CDS 88376974 88377124 88376974 ID=MsG0680034485.01.T01:cds;Parent=MsG0680034485.01.T01
Chr6 CDS 88377262 88377347 88377262 ID=MsG0680034485.01.T01:cds;Parent=MsG0680034485.01.T01
Chr6 CDS 88379316 88379554 88379316 ID=MsG0680034485.01.T01:cds;Parent=MsG0680034485.01.T01
Chr6 CDS 88380202 88380373 88380202 ID=MsG0680034485.01.T01:cds;Parent=MsG0680034485.01.T01
Chr6 CDS 88380664 88380947 88380664 ID=MsG0680034485.01.T01:cds;Parent=MsG0680034485.01.T01
Chr6 CDS 88381431 88381500 88381431 ID=MsG0680034485.01.T01:cds;Parent=MsG0680034485.01.T01
Chr6 three_prime_UTR 88381501 88381886 88381501 ID=MsG0680034485.01.T01:three_prime_utr;Parent=MsG0680034485.01.T01
Gene Sequence

>MsG0680034485.01.T01

ATGCCACCATCCACCTCCGCCGCCAGAATCCTTGCGGAGCTCCGCCGTATCTCGACCCGCACCGGCATAAGCTCCACTGTCCGTCCATTCAGCTCCGCTGCTGCCGTCTCTGATTCCGACCCACCACTTTCTTCTTCCTCCGATTCAAATGGAAAAGCTTCTAAATGGTGGTTGTATCTACCTGGAGCAATTGCATTTGGTCTTGGGAGTTGGCAGATTGTTAGAAGAGAAGATAAGATTAAAATGTTGGAGTATCGAGGGAAGAGGTTGCAAATGGAACCATTGAAATTCAGTGGTGCATATCCATCAAGTGAGGAGTTAGATTCTTTGGAATTTAGAAAGGTTGTCTGCAAGGGAGTTTTTGATGATAAAAAATCAATCTACGTGGGACCACGTTCAAGAAGCATTTCAGGAGTTACTGAAAATGGATACTATGTTATAACACCTCTTATGCCGGTTCATGATCATCCTGATAGTGTGAGTTCTCCAATTCTAGTTAACAGAGGATGGGTTCCCCGCAGTTGGAAAGAAAAGTTTTTAGAGGCTTCACACGACGAACAGTTTGCAGATCCACTTCCTTCACCTTCACAAGCTGATGGAACCAAATCGTGGTGGAGATTTTGGTCTAAAGAGTCTGTTATCAGTGAGGACCAGGTCCCGTCTGTAACACCTAACGAAGTGGTCGGGGTAGTTCGCGGAAGTGAGAACCCAAGCATATTTGTTCCTGCAAATGATCCCGGGTCTTCTCAGTGGTTCTATATTGATGTTCCTAGCATTGCCCGATCTTGCGGCCTTCCAGAAAATACTGTCTATGTTGATGATATTAATGAGAATGTTAATCCAAGTAATCCTTACCCTCTTCCTAAGGATGTTAATGCCTTGATTCGAAGTTCGGTGATGCCTCAGGACCACCTAAACTACATATTAACATGGTATTCTCTTTCTGCAGCAGTTACATTTATGGCTTTCAAGAGGCTAAGACAGAGTAACAAGAGGAGATAG
Protein sequence

>MsG0680034485.01.T01

MPPSTSAARILAELRRISTRTGISSTVRPFSSAAAVSDSDPPLSSSSDSNGKASKWWLYLPGAIAFGLGSWQIVRREDKIKMLEYRGKRLQMEPLKFSGAYPSSEELDSLEFRKVVCKGVFDDKKSIYVGPRSRSISGVTENGYYVITPLMPVHDHPDSVSSPILVNRGWVPRSWKEKFLEASHDEQFADPLPSPSQADGTKSWWRFWSKESVISEDQVPSVTPNEVVGVVRGSENPSIFVPANDPGSSQWFYIDVPSIARSCGLPENTVYVDDINENVNPSNPYPLPKDVNALIRSSVMPQDHLNYILTWYSLSAAVTFMAFKRLRQSNKRR*