AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017516.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017516.01.T01 MTR_3g108280 99.690 323 1 0 1 323 1 323 0.0 644
MsG0380017516.01.T01 MTR_5g082180 91.641 323 27 0 1 323 1 323 0.0 559
MsG0380017516.01.T01 MTR_1g044130 100.000 81 0 0 243 323 1 81 1.01e-48 158
MsG0380017516.01.T01 MTR_7g022400 68.269 104 32 1 11 113 7 110 9.71e-42 143
MsG0380017516.01.T01 MTR_7g112750 67.089 79 25 1 11 88 7 85 9.12e-27 105
MsG0380017516.01.T01 MTR_3g074840 64.706 85 8 2 86 169 1 64 6.06e-22 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017516.01.T01 AT2G40010 84.112 321 47 1 1 321 1 317 0.0 523
MsG0380017516.01.T01 AT3G09200 89.493 276 29 0 3 278 2 277 1.48e-180 501
MsG0380017516.01.T01 AT3G11250 88.406 276 32 0 3 278 2 277 1.11e-178 497
MsG0380017516.01.T01 AT3G09200 78.623 276 26 1 3 278 2 244 5.26e-150 423
MsG0380017516.01.T01 AT1G25260 22.685 216 146 4 10 214 16 221 4.34e-11 62.4

Find 118 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCCTTGGCAGCTGCAGC+AGG 0.147360 3:-97298453 None:intergenic
ATCTCAGACCTCTTTCTTCC+AGG 0.252116 3:+97297821 MsG0380017516.01.T01:CDS
CAGCGTTGACAACAAGGATT+TGG 0.257235 3:-97296338 None:intergenic
GCCCCAGCTGCTGCTGCGTC+TGG 0.268454 3:+97298423 MsG0380017516.01.T01:CDS
CATGGTCACTTCACTTTCAT+TGG 0.278087 3:+97298153 MsG0380017516.01.T01:CDS
CACCAGACGCAGCAGCAGCT+GGG 0.284716 3:-97298425 None:intergenic
GTGACTTGTGTTTGCCTCCT+AGG 0.293721 3:+97298705 MsG0380017516.01.T01:three_prime_UTR
CCACCAGACGCAGCAGCAGC+TGG 0.308640 3:-97298426 None:intergenic
ATCGTAGTTCTGCTTCTTCT+CGG 0.310851 3:-97296283 None:intergenic
CACAGTACCCTTGTTAATCT+TGG 0.311903 3:-97297927 None:intergenic
TTGTAGCAAAGTTTGCTATT+GGG 0.333543 3:+97298125 MsG0380017516.01.T01:CDS
GATTAAAGAGAGGAAATTAA+AGG 0.339368 3:-97296205 None:intergenic
CTTGTAGCAAAGTTTGCTAT+TGG 0.351992 3:+97298124 MsG0380017516.01.T01:CDS
TCTTCATCAGACTCTTCTTC+AGG 0.361468 3:-97298492 None:intergenic
TCCTTAACCTTGTCTGCCTC+GGG 0.376099 3:-97298271 None:intergenic
GAGTTCGGTAGTCAAATTAC+TGG 0.379800 3:+97298744 MsG0380017516.01.T01:three_prime_UTR
GCTGCATTGCTTGCCAAGTT+AGG 0.382522 3:+97298007 MsG0380017516.01.T01:CDS
GTTGAGAAAAGCATTGTTGC+CGG 0.397292 3:-97296478 None:intergenic
GTTCTGCTTCTTCTCGGCTT+TGG 0.398033 3:-97296277 None:intergenic
AGCTCCTGCTCGTGTTGGTT+TGG 0.398892 3:+97297749 MsG0380017516.01.T01:CDS
CTCCTTGGCAGCTGCAGCAG+GGG 0.398915 3:-97298451 None:intergenic
TTCCTTCTTTGCCTCCTCCT+TGG 0.403009 3:-97298466 None:intergenic
CTCCTTAACCTTGTCTGCCT+CGG 0.406809 3:-97298272 None:intergenic
AAAAGCAAGAACGTTCTTGT+AGG 0.409408 3:-97298224 None:intergenic
GGAGGAACAACGACATCAAT+TGG 0.410263 3:-97297777 None:intergenic
TGCCCCTGCTGCAGCTGCCA+AGG 0.415195 3:+97298449 MsG0380017516.01.T01:CDS
TACCCTTGTTAATCTTGGTT+GGG 0.415505 3:-97297922 None:intergenic
CCTCCTTGGCAGCTGCAGCA+GGG 0.416133 3:-97298452 None:intergenic
ACAGCTACAGCAAACTTACT+TGG 0.421114 3:-97298396 None:intergenic
GACATTGGTTTCGGTCTGTT+TGG 0.422303 3:+97298513 MsG0380017516.01.T01:CDS
TCTGATGAAGACATTGGTTT+CGG 0.427250 3:+97298504 MsG0380017516.01.T01:CDS
CCAGCTGCTGCTGCGTCTGG+TGG 0.429030 3:+97298426 MsG0380017516.01.T01:CDS
GGGTCGAGCCCTGTGTTGCC+TGG 0.431244 3:-97297798 None:intergenic
CCTTTCTTAATGAGTTCCAC+AGG 0.432079 3:-97297962 None:intergenic
TGCCTCGGGGAAAGAATATT+CGG 0.440546 3:-97298257 None:intergenic
TGGTGACTCCGTTGTTCTCA+TGG 0.440885 3:+97296407 MsG0380017516.01.T01:CDS
AGATTTCATGAGATCATACT+TGG 0.450081 3:+97298589 MsG0380017516.01.T01:three_prime_UTR
TCAGTGAGGTCAAGAACCTC+AGG 0.450763 3:-97298094 None:intergenic
GACCACAAGCCCGTATGAAA+AGG 0.451799 3:-97298038 None:intergenic
AGCGTTGACAACAAGGATTT+GGG 0.451933 3:-97296337 None:intergenic
AGAAAACTAACGACAAGAAG+AGG 0.456056 3:-97296507 None:intergenic
TGCTGCAGCTGCCAAGGAGG+AGG 0.457641 3:+97298455 MsG0380017516.01.T01:CDS
CCCCGAGGCAGACAAGGTTA+AGG 0.461023 3:+97298270 MsG0380017516.01.T01:CDS
GATCATACTTGGTTCATTCT+CGG 0.466035 3:+97298600 MsG0380017516.01.T01:three_prime_UTR
TTTCACTAAAGGTGACTTGA+AGG 0.469610 3:+97297393 MsG0380017516.01.T01:CDS
ATTGATGTCGTTGTTCCTCC+AGG 0.473267 3:+97297780 MsG0380017516.01.T01:CDS
TCAGCTACAGAACATTCGTC+AGG 0.474511 3:+97296377 MsG0380017516.01.T01:CDS
TGCCAAGGAGGAGGCAAAGA+AGG 0.475094 3:+97298464 MsG0380017516.01.T01:CDS
TGTAGCAAAGTTTGCTATTG+GGG 0.476436 3:+97298126 MsG0380017516.01.T01:CDS
GAGGAGCAGCGGCAAGTGTT+GGG 0.477710 3:-97298186 None:intergenic
ATTAAAGAGAGGAAATTAAA+GGG 0.479325 3:-97296204 None:intergenic
TGAGGAGCAGCGGCAAGTGT+TGG 0.489867 3:-97298187 None:intergenic
TAGTCAAATTACTGGTGATT+CGG 0.490669 3:+97298752 MsG0380017516.01.T01:three_prime_UTR
ACCAGACGCAGCAGCAGCTG+GGG 0.494428 3:-97298424 None:intergenic
GTTTGCTATTGGGGTTTCCA+TGG 0.495280 3:+97298135 MsG0380017516.01.T01:CDS
GTCCTCTCTGTTTATGACAA+TGG 0.495884 3:+97298058 MsG0380017516.01.T01:CDS
TGCTTGCCAAGTTAGGCATT+AGG 0.501788 3:+97298014 MsG0380017516.01.T01:CDS
CTTGACTGAACTATACGTCT+TGG 0.501972 3:+97296181 MsG0380017516.01.T01:five_prime_UTR
AGTCAAAATATAACATGGAA+TGG 0.503032 3:-97298645 None:intergenic
GGGTGTATTCATCGATAAGC+TGG 0.506884 3:-97296317 None:intergenic
GTACCCTTGTTAATCTTGGT+TGG 0.507788 3:-97297923 None:intergenic
GCAACCAAACCAACACGAGC+AGG 0.521300 3:-97297753 None:intergenic
CGTATGCACGCTGAGAAAAC+CGG 0.521724 3:+97296459 MsG0380017516.01.T01:CDS
AAAGGGCCTAATGCCTAACT+TGG 0.523198 3:-97298020 None:intergenic
CCCTGCTGCAGCTGCCAAGG+AGG 0.530721 3:+97298452 MsG0380017516.01.T01:CDS
TGCTTCTTCTCGGCTTTGGT+AGG 0.531501 3:-97296273 None:intergenic
ACCACAAGCCCGTATGAAAA+GGG 0.531757 3:-97298037 None:intergenic
GTTGGAGCTCCTGCTCGTGT+TGG 0.532062 3:+97297744 MsG0380017516.01.T01:CDS
TAGGCATTGACGAACATATG+AGG 0.532355 3:-97298205 None:intergenic
TTCTTTCCCCGAGGCAGACA+AGG 0.533152 3:+97298264 MsG0380017516.01.T01:CDS
TGGAAGAAAGAGGTCTGAGA+TGG 0.537477 3:-97297819 None:intergenic
GTGCTGAATCAGGGTAATGT+TGG 0.549672 3:+97297364 MsG0380017516.01.T01:intron
TAACGACAAGAAGAGGGATA+AGG 0.557262 3:-97296500 None:intergenic
ATTAAGAAAGGAGACAAGGT+TGG 0.560082 3:+97297974 MsG0380017516.01.T01:CDS
CCTGTGGAACTCATTAAGAA+AGG 0.562398 3:+97297962 MsG0380017516.01.T01:CDS
GTTGTTCCTCCAGGCAACAC+AGG 0.564540 3:+97297789 MsG0380017516.01.T01:CDS
CATCCCAACCAAGATTAACA+AGG 0.566179 3:+97297919 MsG0380017516.01.T01:CDS
CAATAGCAAACTTTGCTACA+AGG 0.567134 3:-97298123 None:intergenic
GAAGAGTCTGATGAAGACAT+TGG 0.571608 3:+97298498 MsG0380017516.01.T01:CDS
CTTTCTTAATGAGTTCCACA+GGG 0.574196 3:-97297961 None:intergenic
CGTTGTCAGCGTTGACAACA+AGG 0.575399 3:-97296344 None:intergenic
ATAACAAACCTGGAAGAAAG+AGG 0.579894 3:-97297829 None:intergenic
GGTGACTCCGTTGTTCTCAT+GGG 0.580224 3:+97296408 MsG0380017516.01.T01:CDS
ACGAACAGATCGCTTCATCA+TGG 0.583200 3:-97296439 None:intergenic
CAAATTAAAAGTTAAAACCT+AGG 0.589132 3:-97298722 None:intergenic
GGAAGAAAGAGGTCTGAGAT+GGG 0.590223 3:-97297818 None:intergenic
CAGCTACAGCAAACTTACTT+GGG 0.593694 3:-97298395 None:intergenic
GGCAAGTGTTGGGTAAGAGA+TGG 0.602128 3:-97298176 None:intergenic
GAAAACTAACGACAAGAAGA+GGG 0.606607 3:-97296506 None:intergenic
TTTGGAAGGAACGAAACGAA+GGG 0.608382 3:-97296127 None:intergenic
AAAAGAGCAGGTTAAAGTGA+CGG 0.611034 3:+97296148 MsG0380017516.01.T01:five_prime_UTR
TTGTTCCTCCAGGCAACACA+GGG 0.611479 3:+97297790 MsG0380017516.01.T01:CDS
CAAGATTAACAAGGGTACTG+TGG 0.615021 3:+97297928 MsG0380017516.01.T01:CDS
AACAACAACAAAATCAACAA+TGG 0.626124 3:+97296242 MsG0380017516.01.T01:exon
TGAAGAAGTTGCTAAATACA+AGG 0.626443 3:+97297423 MsG0380017516.01.T01:CDS
GACGAACATATGAGGAGCAG+CGG 0.628131 3:-97298197 None:intergenic
CAGCTACAGAACATTCGTCA+GGG 0.630095 3:+97296378 MsG0380017516.01.T01:CDS
GTTGTCAACGCTGACAACGT+TGG 0.630374 3:+97296348 MsG0380017516.01.T01:CDS
TGGTTCAGTGTTTAGCCCTG+AGG 0.633517 3:+97298078 MsG0380017516.01.T01:CDS
ATTAAAAGTTAAAACCTAGG+AGG 0.636784 3:-97298719 None:intergenic
GATAAAGTCAAAATATAACA+TGG 0.649347 3:-97298650 None:intergenic
CAATGAAAGTGAAGTGACCA+TGG 0.657879 3:-97298152 None:intergenic
CAAGGTTAAGGAGTACCTGA+AGG 0.661074 3:+97298282 MsG0380017516.01.T01:CDS
CAAGACGTATAGTTCAGTCA+AGG 0.663107 3:-97296180 None:intergenic
GTTCTTTCCCATGAGAACAA+CGG 0.664224 3:-97296415 None:intergenic
ATCCCAACCAAGATTAACAA+GGG 0.664581 3:+97297920 MsG0380017516.01.T01:CDS
AACATTCGTCAGGGTCTACG+TGG 0.667957 3:+97296387 MsG0380017516.01.T01:CDS
TGTGGAAATTATTACCCCTG+TGG 0.672323 3:+97297946 MsG0380017516.01.T01:CDS
ACTCATTAAGAAAGGAGACA+AGG 0.674494 3:+97297970 MsG0380017516.01.T01:CDS
TCGAGCCCTGTGTTGCCTGG+AGG 0.687408 3:-97297795 None:intergenic
CCTTAACCTTGTCTGCCTCG+GGG 0.697769 3:-97298270 None:intergenic
CAGTGAGGTCAAGAACCTCA+GGG 0.701495 3:-97298093 None:intergenic
TGAGGTTCTTGACCTCACTG+AGG 0.710337 3:+97298096 MsG0380017516.01.T01:CDS
AACCATTGTCATAAACAGAG+AGG 0.717707 3:-97298060 None:intergenic
GACGTATAGTTCAGTCAAGG+CGG 0.717823 3:-97296177 None:intergenic
TTTCTTAATGAGTTCCACAG+GGG 0.725748 3:-97297960 None:intergenic
TACCGAATATTCTTTCCCCG+AGG 0.737445 3:+97298255 MsG0380017516.01.T01:CDS
CTACAAGGTCATCCTCAGTG+AGG 0.743500 3:-97298108 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCAAAGAATAAGAAAAA+TGG - Chr3:97298360-97298379 None:intergenic 15.0%
!! AAGCTTATAAATAATACATA+GGG + Chr3:97296876-97296895 MsG0380017516.01.T01:intron 15.0%
!! AATCAAAGAATAAGAAAAAT+GGG - Chr3:97298359-97298378 None:intergenic 15.0%
!! TAAGCTTATAAATAATACAT+AGG + Chr3:97296875-97296894 MsG0380017516.01.T01:intron 15.0%
!! TATTATTTATAAGCTTATCA+AGG - Chr3:97296872-97296891 None:intergenic 15.0%
!!! AGTCTAACTTTATTTATAAT+GGG + Chr3:97296727-97296746 MsG0380017516.01.T01:intron 15.0%
!!! TTTAACTTTTAATTTGAGTT+CGG + Chr3:97298729-97298748 MsG0380017516.01.T01:three_prime_UTR 15.0%
!! ATTAAAGAGAGGAAATTAAA+GGG - Chr3:97296207-97296226 None:intergenic 20.0%
!! CAAATTAAAAGTTAAAACCT+AGG - Chr3:97298725-97298744 None:intergenic 20.0%
!! GATAAAGTCAAAATATAACA+TGG - Chr3:97298653-97298672 None:intergenic 20.0%
!! TAATTGTCTTAAATCTGAAT+AGG + Chr3:97297722-97297741 MsG0380017516.01.T01:intron 20.0%
!! TATGCAAATAAATAAGCTTA+TGG - Chr3:97297119-97297138 None:intergenic 20.0%
!!! CAGTCTAACTTTATTTATAA+TGG + Chr3:97296726-97296745 MsG0380017516.01.T01:intron 20.0%
!!! GTCTAACTTTATTTATAATG+GGG + Chr3:97296728-97296747 MsG0380017516.01.T01:intron 20.0%
!!! TTCTCGTTTTAAATTCTATA+TGG + Chr3:97298678-97298697 MsG0380017516.01.T01:three_prime_UTR 20.0%
! AACAACAACAAAATCAACAA+TGG + Chr3:97296242-97296261 MsG0380017516.01.T01:exon 25.0%
! AATTACTGCACTATATTATG+AGG + Chr3:97297305-97297324 MsG0380017516.01.T01:intron 25.0%
! AGTCAAAATATAACATGGAA+TGG - Chr3:97298648-97298667 None:intergenic 25.0%
! ATATGTTATGTTGTTAAGCA+TGG + Chr3:97297470-97297489 MsG0380017516.01.T01:intron 25.0%
! ATTAAAAGTTAAAACCTAGG+AGG - Chr3:97298722-97298741 None:intergenic 25.0%
! ATTTACAGAAATTGTAACGA+GGG - Chr3:97297616-97297635 None:intergenic 25.0%
! CTTTATGTTAATTCACAAGT+GGG + Chr3:97296805-97296824 MsG0380017516.01.T01:intron 25.0%
! GATTAAAGAGAGGAAATTAA+AGG - Chr3:97296208-97296227 None:intergenic 25.0%
! TATTTACAGAAATTGTAACG+AGG - Chr3:97297617-97297636 None:intergenic 25.0%
! TCTTTATGTTAATTCACAAG+TGG + Chr3:97296804-97296823 MsG0380017516.01.T01:intron 25.0%
! TTAAAAGAAGATAACAAACC+TGG - Chr3:97297842-97297861 None:intergenic 25.0%
! TTATGTTTATTCTCCACTTT+AGG + Chr3:97297889-97297908 MsG0380017516.01.T01:intron 25.0%
!! AATAAGAAAAATGGGAGTAT+TGG - Chr3:97298351-97298370 None:intergenic 25.0%
!! TTTAGTGATTTTGTGTGATT+TGG + Chr3:97296582-97296601 MsG0380017516.01.T01:intron 25.0%
!!! ATAAGAAAAATGGGAGTATT+GGG - Chr3:97298350-97298369 None:intergenic 25.0%
!!! TGATTTTGTTGTTGTTGATA+GGG - Chr3:97296238-97296257 None:intergenic 25.0%
!!! TTCTGTTTTTTGTTACGTAT+AGG + Chr3:97296618-97296637 MsG0380017516.01.T01:intron 25.0%
!!! TTCTTTAGTTTTGCTATTAG+TGG + Chr3:97298547-97298566 MsG0380017516.01.T01:three_prime_UTR 25.0%
!!! TTGATTTTGTTGTTGTTGAT+AGG - Chr3:97296239-97296258 None:intergenic 25.0%
AAAATAAGCTCAATCCAAAC+GGG + Chr3:97297092-97297111 MsG0380017516.01.T01:intron 30.0%
AATAATACATAGGGTCTGTT+TGG + Chr3:97296885-97296904 MsG0380017516.01.T01:intron 30.0%
ACTAGAGGTGACAAAAAAAA+TGG - Chr3:97297542-97297561 None:intergenic 30.0%
AGATTTCATGAGATCATACT+TGG + Chr3:97298589-97298608 MsG0380017516.01.T01:three_prime_UTR 30.0%
CAAAATAAGCTCAATCCAAA+CGG + Chr3:97297091-97297110 MsG0380017516.01.T01:intron 30.0%
CATTCAACAAACAAAACAAG+TGG - Chr3:97297689-97297708 None:intergenic 30.0%
TAGTCAAATTACTGGTGATT+CGG + Chr3:97298752-97298771 MsG0380017516.01.T01:three_prime_UTR 30.0%
TAGTGAGAACTTGTGAATTA+AGG + Chr3:97297028-97297047 MsG0380017516.01.T01:intron 30.0%
TGAAGAAGTTGCTAAATACA+AGG + Chr3:97297423-97297442 MsG0380017516.01.T01:CDS 30.0%
TGTCTTAAATCTGAATAGGT+TGG + Chr3:97297726-97297745 MsG0380017516.01.T01:intron 30.0%
TTCGCTGTTCGATTTAATAA+TGG + Chr3:97296549-97296568 MsG0380017516.01.T01:intron 30.0%
! AATACTTTTCGTTTGATGCA+TGG + Chr3:97297636-97297655 MsG0380017516.01.T01:intron 30.0%
! TATTGTTGTTAACTCTTGTG+AGG + Chr3:97297337-97297356 MsG0380017516.01.T01:intron 30.0%
!! TTGTAGCAAAGTTTGCTATT+GGG + Chr3:97298125-97298144 MsG0380017516.01.T01:CDS 30.0%
!!! GTTGGTTTGATTTTCACTAA+AGG + Chr3:97297382-97297401 MsG0380017516.01.T01:CDS 30.0%
AAAAGAGCAGGTTAAAGTGA+CGG + Chr3:97296148-97296167 MsG0380017516.01.T01:five_prime_UTR 35.0%
AAAAGCAAGAACGTTCTTGT+AGG - Chr3:97298227-97298246 None:intergenic 35.0%
AAATAAGCTCAATCCAAACG+GGG + Chr3:97297093-97297112 MsG0380017516.01.T01:intron 35.0%
AACCATTGTCATAAACAGAG+AGG - Chr3:97298063-97298082 None:intergenic 35.0%
ACTCATTAAGAAAGGAGACA+AGG + Chr3:97297970-97297989 MsG0380017516.01.T01:CDS 35.0%
AGAAAACTAACGACAAGAAG+AGG - Chr3:97296510-97296529 None:intergenic 35.0%
ATAACAAACCTGGAAGAAAG+AGG - Chr3:97297832-97297851 None:intergenic 35.0%
ATCCCAACCAAGATTAACAA+GGG + Chr3:97297920-97297939 MsG0380017516.01.T01:CDS 35.0%
ATGTTGAAGTCAATACCTTC+AGG - Chr3:97298300-97298319 None:intergenic 35.0%
ATTAAGAAAGGAGACAAGGT+TGG + Chr3:97297974-97297993 MsG0380017516.01.T01:CDS 35.0%
CAATAGCAAACTTTGCTACA+AGG - Chr3:97298126-97298145 None:intergenic 35.0%
CTTTCTTAATGAGTTCCACA+GGG - Chr3:97297964-97297983 None:intergenic 35.0%
GAAAACTAACGACAAGAAGA+GGG - Chr3:97296509-97296528 None:intergenic 35.0%
GATCATACTTGGTTCATTCT+CGG + Chr3:97298600-97298619 MsG0380017516.01.T01:three_prime_UTR 35.0%
GCAATAACTGTCTCTTTGTT+TGG - Chr3:97297221-97297240 None:intergenic 35.0%
TACCCTTGTTAATCTTGGTT+GGG - Chr3:97297925-97297944 None:intergenic 35.0%
TTTCACTAAAGGTGACTTGA+AGG + Chr3:97297393-97297412 MsG0380017516.01.T01:CDS 35.0%
TTTCTTAATGAGTTCCACAG+GGG - Chr3:97297963-97297982 None:intergenic 35.0%
! TCACTTTAACCTGCTCTTTT+TGG - Chr3:97296148-97296167 None:intergenic 35.0%
! TTTAACCTGCTCTTTTTGGA+AGG - Chr3:97296144-97296163 None:intergenic 35.0%
!! CTTGTAGCAAAGTTTGCTAT+TGG + Chr3:97298124-97298143 MsG0380017516.01.T01:CDS 35.0%
!! CTTTGATTTTTGTTCACTGC+AGG + Chr3:97298371-97298390 MsG0380017516.01.T01:intron 35.0%
!! TCTGATGAAGACATTGGTTT+CGG + Chr3:97298504-97298523 MsG0380017516.01.T01:CDS 35.0%
!! TGTAGCAAAGTTTGCTATTG+GGG + Chr3:97298126-97298145 MsG0380017516.01.T01:CDS 35.0%
!!! GGGTTTTGAAGATTAAAGAG+AGG - Chr3:97296218-97296237 None:intergenic 35.0%
!!! TTTTTTTGTCACCTCTAGTG+AGG + Chr3:97297543-97297562 MsG0380017516.01.T01:intron 35.0%
ACAGCTACAGCAAACTTACT+TGG - Chr3:97298399-97298418 None:intergenic 40.0%
CAAGACGTATAGTTCAGTCA+AGG - Chr3:97296183-97296202 None:intergenic 40.0%
CAATGAAAGTGAAGTGACCA+TGG - Chr3:97298155-97298174 None:intergenic 40.0%
CACAGTACCCTTGTTAATCT+TGG - Chr3:97297930-97297949 None:intergenic 40.0%
CAGCTACAGCAAACTTACTT+GGG - Chr3:97298398-97298417 None:intergenic 40.0%
CATCCCAACCAAGATTAACA+AGG + Chr3:97297919-97297938 MsG0380017516.01.T01:CDS 40.0%
CATGGTCACTTCACTTTCAT+TGG + Chr3:97298153-97298172 MsG0380017516.01.T01:CDS 40.0%
CCTGTGGAACTCATTAAGAA+AGG + Chr3:97297962-97297981 MsG0380017516.01.T01:CDS 40.0%
CCTTTCTTAATGAGTTCCAC+AGG - Chr3:97297965-97297984 None:intergenic 40.0%
CTTGACTGAACTATACGTCT+TGG + Chr3:97296181-97296200 MsG0380017516.01.T01:five_prime_UTR 40.0%
GAAGAGTCTGATGAAGACAT+TGG + Chr3:97298498-97298517 MsG0380017516.01.T01:CDS 40.0%
GAGTTCGGTAGTCAAATTAC+TGG + Chr3:97298744-97298763 MsG0380017516.01.T01:three_prime_UTR 40.0%
GTACCCTTGTTAATCTTGGT+TGG - Chr3:97297926-97297945 None:intergenic 40.0%
GTCCTCTCTGTTTATGACAA+TGG + Chr3:97298058-97298077 MsG0380017516.01.T01:CDS 40.0%
GTTCTTTCCCATGAGAACAA+CGG - Chr3:97296418-97296437 None:intergenic 40.0%
TAACGACAAGAAGAGGGATA+AGG - Chr3:97296503-97296522 None:intergenic 40.0%
TCTTCATCAGACTCTTCTTC+AGG - Chr3:97298495-97298514 None:intergenic 40.0%
TGAGGATTTGTGCTGAATCA+GGG + Chr3:97297355-97297374 MsG0380017516.01.T01:intron 40.0%
TGTGGAAATTATTACCCCTG+TGG + Chr3:97297946-97297965 MsG0380017516.01.T01:CDS 40.0%
TTTGGAAGGAACGAAACGAA+GGG - Chr3:97296130-97296149 None:intergenic 40.0%
! ATAATGGGGCGTGTTTGAAT+TGG + Chr3:97296742-97296761 MsG0380017516.01.T01:intron 40.0%
! ATCGTAGTTCTGCTTCTTCT+CGG - Chr3:97296286-97296305 None:intergenic 40.0%
! GAACGAAACGAAGGGTTTTA+GGG - Chr3:97296122-97296141 None:intergenic 40.0%
!! AGCGTTGACAACAAGGATTT+GGG - Chr3:97296340-97296359 None:intergenic 40.0%
!! CAAGATTAACAAGGGTACTG+TGG + Chr3:97297928-97297947 MsG0380017516.01.T01:CDS 40.0%
!! GTCTCTTTGTTTGGTGCTTA+TGG - Chr3:97297212-97297231 None:intergenic 40.0%
!! GTTGAGAAAAGCATTGTTGC+CGG - Chr3:97296481-97296500 None:intergenic 40.0%
!! TAGGCATTGACGAACATATG+AGG - Chr3:97298208-97298227 None:intergenic 40.0%
!! TTTTGGAAGGAACGAAACGA+AGG - Chr3:97296131-97296150 None:intergenic 40.0%
!!! AAACGAAGGGTTTTAGGGTT+CGG - Chr3:97296117-97296136 None:intergenic 40.0%
AAAGGGCCTAATGCCTAACT+TGG - Chr3:97298023-97298042 None:intergenic 45.0%
AATAAGCTTATGGCCCCGTT+TGG - Chr3:97297109-97297128 None:intergenic 45.0%
ACCACAAGCCCGTATGAAAA+GGG - Chr3:97298040-97298059 None:intergenic 45.0%
ACGAACAGATCGCTTCATCA+TGG - Chr3:97296442-97296461 None:intergenic 45.0%
ATCTCAGACCTCTTTCTTCC+AGG + Chr3:97297821-97297840 MsG0380017516.01.T01:CDS 45.0%
ATTGATGTCGTTGTTCCTCC+AGG + Chr3:97297780-97297799 MsG0380017516.01.T01:CDS 45.0%
CAGCTACAGAACATTCGTCA+GGG + Chr3:97296378-97296397 MsG0380017516.01.T01:CDS 45.0%
GACGTATAGTTCAGTCAAGG+CGG - Chr3:97296180-97296199 None:intergenic 45.0%
GGAGGAACAACGACATCAAT+TGG - Chr3:97297780-97297799 None:intergenic 45.0%
GGGTGTATTCATCGATAAGC+TGG - Chr3:97296320-97296339 None:intergenic 45.0%
GTGAGGATTTGTGCTGAATC+AGG + Chr3:97297354-97297373 MsG0380017516.01.T01:intron 45.0%
GTGCTGAATCAGGGTAATGT+TGG + Chr3:97297364-97297383 MsG0380017516.01.T01:intron 45.0%
TACCGAATATTCTTTCCCCG+AGG + Chr3:97298255-97298274 MsG0380017516.01.T01:CDS 45.0%
TCAGCTACAGAACATTCGTC+AGG + Chr3:97296377-97296396 MsG0380017516.01.T01:CDS 45.0%
TCGTTCCTTCCAAAAAGAGC+AGG + Chr3:97296136-97296155 MsG0380017516.01.T01:five_prime_UTR 45.0%
TGCCTCGGGGAAAGAATATT+CGG - Chr3:97298260-97298279 None:intergenic 45.0%
TGCTTGCCAAGTTAGGCATT+AGG + Chr3:97298014-97298033 MsG0380017516.01.T01:CDS 45.0%
TGGAAGAAAGAGGTCTGAGA+TGG - Chr3:97297822-97297841 None:intergenic 45.0%
! GCATTAGGCCCTTTTCATAC+GGG + Chr3:97298029-97298048 MsG0380017516.01.T01:CDS 45.0%
! GGAACGAAACGAAGGGTTTT+AGG - Chr3:97296123-97296142 None:intergenic 45.0%
! GGAAGAAAGAGGTCTGAGAT+GGG - Chr3:97297821-97297840 None:intergenic 45.0%
! GGCATTAGGCCCTTTTCATA+CGG + Chr3:97298028-97298047 MsG0380017516.01.T01:CDS 45.0%
!! CAAGGTTAAGGAGTACCTGA+AGG + Chr3:97298282-97298301 MsG0380017516.01.T01:CDS 45.0%
!! CAGCGTTGACAACAAGGATT+TGG - Chr3:97296341-97296360 None:intergenic 45.0%
!! GACATTGGTTTCGGTCTGTT+TGG + Chr3:97298513-97298532 MsG0380017516.01.T01:CDS 45.0%
!! GTTTGCTATTGGGGTTTCCA+TGG + Chr3:97298135-97298154 MsG0380017516.01.T01:CDS 45.0%
!! AACTTATAAATAATAAATAA+AGG - Chr3:97296960-97296979 None:intergenic 5.0%
AACATTCGTCAGGGTCTACG+TGG + Chr3:97296387-97296406 MsG0380017516.01.T01:CDS 50.0%
CAACCACAGTACCTCACTAG+AGG - Chr3:97297557-97297576 None:intergenic 50.0%
CAGTGAGGTCAAGAACCTCA+GGG - Chr3:97298096-97298115 None:intergenic 50.0%
CGTATGCACGCTGAGAAAAC+CGG + Chr3:97296459-97296478 MsG0380017516.01.T01:CDS 50.0%
CTACAAGGTCATCCTCAGTG+AGG - Chr3:97298111-97298130 None:intergenic 50.0%
CTCCTTAACCTTGTCTGCCT+CGG - Chr3:97298275-97298294 None:intergenic 50.0%
GACCACAAGCCCGTATGAAA+AGG - Chr3:97298041-97298060 None:intergenic 50.0%
GACGAACATATGAGGAGCAG+CGG - Chr3:97298200-97298219 None:intergenic 50.0%
GCATGGCAATTGCAGCAATG+TGG + Chr3:97297653-97297672 MsG0380017516.01.T01:intron 50.0%
GCTGCATTGCTTGCCAAGTT+AGG + Chr3:97298007-97298026 MsG0380017516.01.T01:CDS 50.0%
GGGATGTTGAGCACCTAAAG+TGG - Chr3:97297905-97297924 None:intergenic 50.0%
GGTGACTCCGTTGTTCTCAT+GGG + Chr3:97296408-97296427 MsG0380017516.01.T01:CDS 50.0%
GTTCTGCTTCTTCTCGGCTT+TGG - Chr3:97296280-97296299 None:intergenic 50.0%
GTTGTCAACGCTGACAACGT+TGG + Chr3:97296348-97296367 MsG0380017516.01.T01:CDS 50.0%
TCAGTGAGGTCAAGAACCTC+AGG - Chr3:97298097-97298116 None:intergenic 50.0%
TCCTTAACCTTGTCTGCCTC+GGG - Chr3:97298274-97298293 None:intergenic 50.0%
TGAGGTTCTTGACCTCACTG+AGG + Chr3:97298096-97298115 MsG0380017516.01.T01:CDS 50.0%
TGGTGACTCCGTTGTTCTCA+TGG + Chr3:97296407-97296426 MsG0380017516.01.T01:CDS 50.0%
TGGTTCAGTGTTTAGCCCTG+AGG + Chr3:97298078-97298097 MsG0380017516.01.T01:CDS 50.0%
TTCCTTCTTTGCCTCCTCCT+TGG - Chr3:97298469-97298488 None:intergenic 50.0%
TTGTTCCTCCAGGCAACACA+GGG + Chr3:97297790-97297809 MsG0380017516.01.T01:CDS 50.0%
! GTGACTTGTGTTTGCCTCCT+AGG + Chr3:97298705-97298724 MsG0380017516.01.T01:three_prime_UTR 50.0%
! TGCTTCTTCTCGGCTTTGGT+AGG - Chr3:97296276-97296295 None:intergenic 50.0%
!! CGTTGTCAGCGTTGACAACA+AGG - Chr3:97296347-97296366 None:intergenic 50.0%
!! GGCAAGTGTTGGGTAAGAGA+TGG - Chr3:97298179-97298198 None:intergenic 50.0%
!! TCACCTCTAGTGAGGTACTG+TGG + Chr3:97297551-97297570 MsG0380017516.01.T01:intron 50.0%
AAGCGCGTACTCACTGCGTA+CGG - Chr3:97297183-97297202 None:intergenic 55.0%
CCTTAACCTTGTCTGCCTCG+GGG - Chr3:97298273-97298292 None:intergenic 55.0%
CTGCGTACGGGCGTTAGAAT+TGG - Chr3:97297170-97297189 None:intergenic 55.0%
GCAACCAAACCAACACGAGC+AGG - Chr3:97297756-97297775 None:intergenic 55.0%
GTTGTTCCTCCAGGCAACAC+AGG + Chr3:97297789-97297808 MsG0380017516.01.T01:CDS 55.0%
TGCCAAGGAGGAGGCAAAGA+AGG + Chr3:97298464-97298483 MsG0380017516.01.T01:CDS 55.0%
TTCTTTCCCCGAGGCAGACA+AGG + Chr3:97298264-97298283 MsG0380017516.01.T01:CDS 55.0%
! GCCCTTTTCATACGGGCTTG+TGG + Chr3:97298036-97298055 MsG0380017516.01.T01:CDS 55.0%
!! AGCTCCTGCTCGTGTTGGTT+TGG + Chr3:97297749-97297768 MsG0380017516.01.T01:CDS 55.0%
AGCGCGTACTCACTGCGTAC+GGG - Chr3:97297182-97297201 None:intergenic 60.0%
CCCCGAGGCAGACAAGGTTA+AGG + Chr3:97298270-97298289 MsG0380017516.01.T01:CDS 60.0%
GAGGAGCAGCGGCAAGTGTT+GGG - Chr3:97298189-97298208 None:intergenic 60.0%
GCAGTGAGTACGCGCTTGTG+TGG + Chr3:97297186-97297205 MsG0380017516.01.T01:intron 60.0%
GTTGGAGCTCCTGCTCGTGT+TGG + Chr3:97297744-97297763 MsG0380017516.01.T01:CDS 60.0%
TGAGGAGCAGCGGCAAGTGT+TGG - Chr3:97298190-97298209 None:intergenic 60.0%
ACCAGACGCAGCAGCAGCTG+GGG - Chr3:97298427-97298446 None:intergenic 65.0%
CACCAGACGCAGCAGCAGCT+GGG - Chr3:97298428-97298447 None:intergenic 65.0%
CCTCCTTGGCAGCTGCAGCA+GGG - Chr3:97298455-97298474 None:intergenic 65.0%
CTCCTTGGCAGCTGCAGCAG+GGG - Chr3:97298454-97298473 None:intergenic 65.0%
TCCTCCTTGGCAGCTGCAGC+AGG - Chr3:97298456-97298475 None:intergenic 65.0%
TCGAGCCCTGTGTTGCCTGG+AGG - Chr3:97297798-97297817 None:intergenic 65.0%
TGCTGCAGCTGCCAAGGAGG+AGG + Chr3:97298455-97298474 MsG0380017516.01.T01:CDS 65.0%
CCACCAGACGCAGCAGCAGC+TGG - Chr3:97298429-97298448 None:intergenic 70.0%
CCAGCTGCTGCTGCGTCTGG+TGG + Chr3:97298426-97298445 MsG0380017516.01.T01:CDS 70.0%
CCCTGCTGCAGCTGCCAAGG+AGG + Chr3:97298452-97298471 MsG0380017516.01.T01:CDS 70.0%
GGGTCGAGCCCTGTGTTGCC+TGG - Chr3:97297801-97297820 None:intergenic 70.0%
TGCCCCTGCTGCAGCTGCCA+AGG + Chr3:97298449-97298468 MsG0380017516.01.T01:CDS 70.0%
GCCCCAGCTGCTGCTGCGTC+TGG + Chr3:97298423-97298442 MsG0380017516.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 97296110 97298777 97296110 ID=MsG0380017516.01;Name=MsG0380017516.01
Chr3 mRNA 97296110 97298777 97296110 ID=MsG0380017516.01.T01;Parent=MsG0380017516.01;Name=MsG0380017516.01.T01;_AED=0.45;_eAED=0.45;_QI=151|1|1|1|1|1|5|232|323
Chr3 exon 97296110 97296518 97296110 ID=MsG0380017516.01.T01:exon:16286;Parent=MsG0380017516.01.T01
Chr3 exon 97297376 97297444 97297376 ID=MsG0380017516.01.T01:exon:16287;Parent=MsG0380017516.01.T01
Chr3 exon 97297744 97297842 97297744 ID=MsG0380017516.01.T01:exon:16288;Parent=MsG0380017516.01.T01
Chr3 exon 97297911 97298303 97297911 ID=MsG0380017516.01.T01:exon:16289;Parent=MsG0380017516.01.T01
Chr3 exon 97298393 97298777 97298393 ID=MsG0380017516.01.T01:exon:16290;Parent=MsG0380017516.01.T01
Chr3 five_prime_UTR 97296110 97296260 97296110 ID=MsG0380017516.01.T01:five_prime_utr;Parent=MsG0380017516.01.T01
Chr3 CDS 97296261 97296518 97296261 ID=MsG0380017516.01.T01:cds;Parent=MsG0380017516.01.T01
Chr3 CDS 97297376 97297444 97297376 ID=MsG0380017516.01.T01:cds;Parent=MsG0380017516.01.T01
Chr3 CDS 97297744 97297842 97297744 ID=MsG0380017516.01.T01:cds;Parent=MsG0380017516.01.T01
Chr3 CDS 97297911 97298303 97297911 ID=MsG0380017516.01.T01:cds;Parent=MsG0380017516.01.T01
Chr3 CDS 97298393 97298545 97298393 ID=MsG0380017516.01.T01:cds;Parent=MsG0380017516.01.T01
Chr3 three_prime_UTR 97298546 97298777 97298546 ID=MsG0380017516.01.T01:three_prime_utr;Parent=MsG0380017516.01.T01
Gene Sequence

>MsG0380017516.01.T01

ATGGCAGTGAAACCTACCAAAGCCGAGAAGAAGCAGAACTACGATGCTAAGCTTTGCCAGCTTATCGATGAATACACCCAAATCCTTGTTGTCAACGCTGACAACGTTGGATCTAATCAGCTACAGAACATTCGTCAGGGTCTACGTGGTGACTCCGTTGTTCTCATGGGAAAGAACACCATGATGAAGCGATCTGTTCGTATGCACGCTGAGAAAACCGGCAACAATGCTTTTCTCAACCTTATCCCTCTTCTTGTCGGTAATGTTGGTTTGATTTTCACTAAAGGTGACTTGAAGGAAGTGAGTGAAGAAGTTGCTAAATACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTCGTTGTTCCTCCAGGCAACACAGGGCTCGACCCATCTCAGACCTCTTTCTTCCAGGTGCTCAACATCCCAACCAAGATTAACAAGGGTACTGTGGAAATTATTACCCCTGTGGAACTCATTAAGAAAGGAGACAAGGTTGGATCTTCTGAAGCTGCATTGCTTGCCAAGTTAGGCATTAGGCCCTTTTCATACGGGCTTGTGGTCCTCTCTGTTTATGACAATGGTTCAGTGTTTAGCCCTGAGGTTCTTGACCTCACTGAGGATGACCTTGTAGCAAAGTTTGCTATTGGGGTTTCCATGGTCACTTCACTTTCATTGGCCATCTCTTACCCAACACTTGCCGCTGCTCCTCATATGTTCGTCAATGCCTACAAGAACGTTCTTGCTTTTGCAGTTGCTACCGAATATTCTTTCCCCGAGGCAGACAAGGTTAAGGAGTACCTGAAGGACCCAAGTAAGTTTGCTGTAGCTGTTGCTGCCCCAGCTGCTGCTGCGTCTGGTGGTGCCCCTGCTGCAGCTGCCAAGGAGGAGGCAAAGAAGGAAGAGCCTGAAGAAGAGTCTGATGAAGACATTGGTTTCGGTCTGTTTGGTGATGATTAG

Protein sequence

>MsG0380017516.01.T01

MAVKPTKAEKKQNYDAKLCQLIDEYTQILVVNADNVGSNQLQNIRQGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLVAKFAIGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAFAVATEYSFPEADKVKEYLKDPSKFAVAVAAPAAAASGGAPAAAAKEEAKKEEPEEESDEDIGFGLFGDD*