AlfalfaGEDB | MsG0380017664.01

M. sativa cultivar ZhongmuNo.1 / MsG0380017664.01

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017664.01.T03	GAU14242.1	98.077	52	1	0	24	75	5	56	1.23E-26	102
MsG0380017664.01.T01	XP_003603622.1	95.699	93	1	1	1	90	1	93	2.31E-52	168
MsG0380017664.01.T02	XP_013462037.1	95.604	91	1	1	1	88	1	91	6.79E-51	164

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017664.01.T01	Q6NNL9	60.215	93	34	1	1	90	1	93	5.93E-28	99.8
MsG0380017664.01.T02	Q6NNL9	55.294	85	35	1	1	82	1	85	2.99E-20	80.1
MsG0380017664.01.T03	Q6NNL9	78	50	11	0	26	75	44	93	5.53E-21	81.6

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017664.01.T01	G7J3G6	95.699	93	1	1	1	90	1	93	1.10e-52	168
MsG0380017664.01.T02	A0A072V2I6	95.604	91	1	1	1	88	1	91	3.24e-51	164
MsG0380017664.01.T03	G7J3G6	100.000	50	0	0	26	75	44	93	1.31e-25	99.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080049041.01	MsG0380017664.01	0.812374	4.378394e-51	2.779043e-48
MsG0180005384.01	MsG0380017664.01	0.818654	1.751478e-52	1.318795e-49
MsG0180005789.01	MsG0380017664.01	0.856868	2.404471e-62	5.820528e-59
MsG0280010792.01	MsG0380017664.01	0.808182	3.511044e-50	1.994172e-47
MsG0380015766.01	MsG0380017664.01	0.818988	1.470455e-52	1.117676e-49
MsG0380015857.01	MsG0380017664.01	0.813284	2.767130e-51	1.799425e-48
MsG0380016760.01	MsG0380017664.01	0.805221	1.482326e-49	7.798443e-47
MsG0380017516.01	MsG0380017664.01	0.802239	6.165067e-49	3.004695e-46
MsG0380017664.01	MsG0480020796.01	0.811788	5.876759e-51	3.671442e-48
MsG0380017664.01	MsG0480021293.01	0.804408	2.191647e-49	1.129106e-46
MsG0380017664.01	MsG0680034485.01	0.831092	2.030003e-55	2.180452e-52
MsG0380017664.01	MsG0780040174.01	0.827140	1.844200e-54	1.764948e-51
MsG0380017664.01	MsG0780040756.01	0.802543	5.336814e-49	2.621240e-46
MsG0380017664.01	MsG0880042896.01	0.807037	6.146832e-50	3.388184e-47
MsG0280006760.01	MsG0380017664.01	0.849291	3.553033e-60	6.704089e-57
MsG0280007055.01	MsG0380017664.01	0.819556	1.091473e-52	8.427059e-50
MsG0280007606.01	MsG0380017664.01	0.806043	9.961534e-50	5.352739e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017664.01.T03	MTR_3g109720	100.000	50	0	0	26	75	44	93	3.31e-29	99.8
MsG0380017664.01.T03	MTR_3g109720	97.619	42	1	0	26	67	44	85	2.88e-21	79.7
MsG0380017664.01.T03	MTR_4g100820	54.688	64	24	1	17	75	35	98	8.40e-14	60.8
MsG0380017664.01.T01	MTR_3g109720	95.699	93	1	1	1	90	1	93	2.80e-56	168
MsG0380017664.01.T01	MTR_3g109720	89.412	85	6	1	1	82	1	85	8.44e-38	122
MsG0380017664.01.T01	MTR_4g100820	49.315	73	35	1	18	90	28	98	5.90e-14	62.0
MsG0380017664.01.T02	MTR_3g109720	95.604	91	1	1	1	88	1	91	8.22e-55	164
MsG0380017664.01.T02	MTR_3g109720	89.412	85	6	1	1	82	1	85	5.21e-38	122
MsG0380017664.01.T02	MTR_4g100820	50.685	73	30	2	18	88	28	96	3.07e-14	62.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017664.01.T03	AT5G11630	78.000	50	11	0	26	75	44	93	5.64e-22	81.6
MsG0380017664.01.T03	AT5G11630	78.000	50	11	0	26	75	44	93	5.64e-22	81.6
MsG0380017664.01.T03	AT4G17310	66.000	50	17	0	26	75	50	99	1.55e-15	65.5
MsG0380017664.01.T03	AT4G17310	66.000	50	17	0	26	75	50	99	1.55e-15	65.5
MsG0380017664.01.T03	AT4G17310	66.000	50	17	0	26	75	50	99	1.55e-15	65.5
MsG0380017664.01.T03	AT4G17310	66.000	50	17	0	26	75	50	99	1.55e-15	65.5
MsG0380017664.01.T03	AT4G17310	66.000	50	17	0	26	75	50	99	1.55e-15	65.5
MsG0380017664.01.T03	AT4G17310	66.000	50	17	0	26	75	50	99	1.55e-15	65.5
MsG0380017664.01.T03	AT4G17310	66.000	50	17	0	26	75	50	99	1.55e-15	65.5
MsG0380017664.01.T03	AT4G17310	66.000	50	17	0	26	75	50	99	1.55e-15	65.5
MsG0380017664.01.T03	AT4G17310	66.000	50	17	0	26	75	50	99	1.55e-15	65.5
MsG0380017664.01.T03	AT4G17310	66.000	50	17	0	26	75	50	99	1.55e-15	65.5
MsG0380017664.01.T03	AT5G47455	64.000	50	18	0	26	75	59	108	5.55e-15	64.3
MsG0380017664.01.T03	AT5G47455	64.000	50	18	0	26	75	59	108	5.55e-15	64.3
MsG0380017664.01.T03	AT5G47455	64.000	50	18	0	26	75	59	108	5.55e-15	64.3
MsG0380017664.01.T03	AT5G11630	72.500	40	11	0	26	65	44	83	1.31e-13	60.5
MsG0380017664.01.T03	AT4G17310	73.171	41	11	0	26	66	50	90	5.11e-13	58.9
MsG0380017664.01.T03	AT4G17310	73.171	41	11	0	26	66	50	90	5.11e-13	58.9
MsG0380017664.01.T03	AT4G17310	73.171	41	11	0	26	66	50	90	5.11e-13	58.9
MsG0380017664.01.T03	AT4G17310	73.171	41	11	0	26	66	50	90	5.11e-13	58.9
MsG0380017664.01.T03	AT4G17310	73.171	41	11	0	26	66	50	90	5.11e-13	58.9
MsG0380017664.01.T03	AT5G47455	70.732	41	12	0	26	66	59	99	1.23e-12	58.2
MsG0380017664.01.T03	AT5G47455	70.732	41	12	0	26	66	59	99	1.23e-12	58.2
MsG0380017664.01.T03	AT5G47455	70.732	41	12	0	26	66	59	99	1.23e-12	58.2
MsG0380017664.01.T03	AT5G47455	70.732	41	12	0	26	66	59	99	1.23e-12	58.2
MsG0380017664.01.T03	AT5G47455	69.048	42	13	0	26	67	59	100	2.95e-12	57.4
MsG0380017664.01.T03	AT4G17310	69.048	42	13	0	26	67	50	91	5.48e-12	56.2
MsG0380017664.01.T03	AT4G17310	72.500	40	11	0	26	65	50	89	7.33e-12	55.8
MsG0380017664.01.T03	AT5G47455	70.000	40	12	0	26	65	59	98	1.16e-11	55.8
MsG0380017664.01.T03	AT5G47455	70.000	40	12	0	26	65	59	98	1.55e-11	55.5
MsG0380017664.01.T03	AT5G47455	70.000	40	12	0	26	65	59	98	1.55e-11	55.5
MsG0380017664.01.T01	AT5G11630	60.215	93	34	1	1	90	1	93	6.05e-29	99.8
MsG0380017664.01.T01	AT5G11630	60.215	93	34	1	1	90	1	93	6.05e-29	99.8
MsG0380017664.01.T01	AT5G11630	54.118	85	36	1	1	82	1	85	2.74e-20	77.8
MsG0380017664.01.T01	AT4G17310	66.000	50	17	0	41	90	50	99	1.87e-15	65.9
MsG0380017664.01.T01	AT4G17310	66.000	50	17	0	41	90	50	99	1.87e-15	65.9
MsG0380017664.01.T01	AT4G17310	66.000	50	17	0	41	90	50	99	1.87e-15	65.9
MsG0380017664.01.T01	AT4G17310	66.000	50	17	0	41	90	50	99	1.87e-15	65.9
MsG0380017664.01.T01	AT4G17310	66.000	50	17	0	41	90	50	99	1.87e-15	65.9
MsG0380017664.01.T01	AT4G17310	66.000	50	17	0	41	90	50	99	1.87e-15	65.9
MsG0380017664.01.T01	AT4G17310	66.000	50	17	0	41	90	50	99	1.87e-15	65.9
MsG0380017664.01.T01	AT4G17310	66.000	50	17	0	41	90	50	99	1.87e-15	65.9
MsG0380017664.01.T01	AT4G17310	66.000	50	17	0	41	90	50	99	1.87e-15	65.9
MsG0380017664.01.T01	AT4G17310	66.000	50	17	0	41	90	50	99	1.87e-15	65.9
MsG0380017664.01.T01	AT5G47455	64.000	50	18	0	41	90	59	108	6.69e-15	64.7
MsG0380017664.01.T01	AT5G47455	64.000	50	18	0	41	90	59	108	6.69e-15	64.7
MsG0380017664.01.T01	AT5G47455	64.000	50	18	0	41	90	59	108	6.69e-15	64.7
MsG0380017664.01.T01	AT4G17310	73.171	41	11	0	41	81	50	90	7.24e-13	58.9
MsG0380017664.01.T01	AT4G17310	73.171	41	11	0	41	81	50	90	7.24e-13	58.9
MsG0380017664.01.T01	AT4G17310	73.171	41	11	0	41	81	50	90	7.24e-13	58.9
MsG0380017664.01.T01	AT4G17310	73.171	41	11	0	41	81	50	90	7.24e-13	58.9
MsG0380017664.01.T01	AT4G17310	73.171	41	11	0	41	81	50	90	7.24e-13	58.9
MsG0380017664.01.T01	AT5G47455	70.732	41	12	0	41	81	59	99	1.70e-12	58.2
MsG0380017664.01.T01	AT5G47455	70.732	41	12	0	41	81	59	99	1.70e-12	58.2
MsG0380017664.01.T01	AT5G47455	70.732	41	12	0	41	81	59	99	1.70e-12	58.2
MsG0380017664.01.T01	AT5G47455	70.732	41	12	0	41	81	59	99	1.70e-12	58.2
MsG0380017664.01.T01	AT5G47455	69.048	42	13	0	41	82	59	100	4.64e-12	57.4
MsG0380017664.01.T01	AT4G17310	69.048	42	13	0	41	82	50	91	7.56e-12	56.6
MsG0380017664.01.T01	AT4G17310	72.500	40	11	0	41	80	50	89	1.04e-11	56.2
MsG0380017664.01.T01	AT5G47455	70.000	40	12	0	41	80	59	98	1.69e-11	56.2
MsG0380017664.01.T01	AT5G47455	70.000	40	12	0	41	80	59	98	2.32e-11	55.5
MsG0380017664.01.T01	AT5G47455	70.000	40	12	0	41	80	59	98	2.32e-11	55.5
MsG0380017664.01.T02	AT5G11630	56.044	91	37	1	1	88	1	91	5.51e-25	89.7
MsG0380017664.01.T02	AT5G11630	55.294	85	35	1	1	82	1	85	3.05e-21	80.1
MsG0380017664.01.T02	AT5G11630	55.294	85	35	1	1	82	1	85	3.05e-21	80.1
MsG0380017664.01.T02	AT5G47455	70.833	48	14	0	41	88	59	106	1.21e-16	68.9
MsG0380017664.01.T02	AT4G17310	70.833	48	14	0	41	88	50	97	1.37e-16	68.6
MsG0380017664.01.T02	AT4G17310	67.391	46	15	0	41	86	50	95	1.25e-12	58.5
MsG0380017664.01.T02	AT5G47455	68.293	41	13	0	41	81	59	99	4.85e-12	57.4
MsG0380017664.01.T02	AT4G17310	72.500	40	11	0	41	80	50	89	6.13e-12	56.6
MsG0380017664.01.T02	AT4G17310	72.500	40	11	0	41	80	50	89	6.13e-12	56.6
MsG0380017664.01.T02	AT4G17310	72.500	40	11	0	41	80	50	89	6.13e-12	56.6
MsG0380017664.01.T02	AT4G17310	72.500	40	11	0	41	80	50	89	6.13e-12	56.6
MsG0380017664.01.T02	AT4G17310	72.500	40	11	0	41	80	50	89	6.13e-12	56.6
MsG0380017664.01.T02	AT5G47455	68.293	41	13	0	41	81	59	99	6.18e-12	57.0
MsG0380017664.01.T02	AT5G47455	68.293	41	13	0	41	81	59	99	6.18e-12	57.0
MsG0380017664.01.T02	AT4G17310	72.500	40	11	0	41	80	50	89	8.87e-12	56.2
MsG0380017664.01.T02	AT4G17310	72.500	40	11	0	41	80	50	89	8.87e-12	56.2
MsG0380017664.01.T02	AT4G17310	72.500	40	11	0	41	80	50	89	8.87e-12	56.2
MsG0380017664.01.T02	AT4G17310	72.500	40	11	0	41	80	50	89	8.87e-12	56.2
MsG0380017664.01.T02	AT4G17310	72.500	40	11	0	41	80	50	89	8.87e-12	56.2
MsG0380017664.01.T02	AT4G17310	72.500	40	11	0	41	80	50	89	8.87e-12	56.2
MsG0380017664.01.T02	AT4G17310	72.500	40	11	0	41	80	50	89	8.87e-12	56.2
MsG0380017664.01.T02	AT4G17310	72.500	40	11	0	41	80	50	89	8.87e-12	56.2
MsG0380017664.01.T02	AT4G17310	72.500	40	11	0	41	80	50	89	8.87e-12	56.2
MsG0380017664.01.T02	AT4G17310	72.500	40	11	0	41	80	50	89	8.87e-12	56.2
MsG0380017664.01.T02	AT5G47455	70.000	40	12	0	41	80	59	98	1.31e-11	55.8
MsG0380017664.01.T02	AT5G47455	70.000	40	12	0	41	80	59	98	1.31e-11	55.8
MsG0380017664.01.T02	AT5G47455	70.000	40	12	0	41	80	59	98	1.31e-11	55.8
MsG0380017664.01.T02	AT5G47455	70.000	40	12	0	41	80	59	98	1.31e-11	55.8
MsG0380017664.01.T02	AT5G47455	70.000	40	12	0	41	80	59	98	2.06e-11	55.5
MsG0380017664.01.T02	AT5G47455	70.000	40	12	0	41	80	59	98	2.06e-11	55.5
MsG0380017664.01.T02	AT5G47455	70.000	40	12	0	41	80	59	98	2.06e-11	55.5

Find 21 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAATTAACGTTACATTAAAA+TGG	0.298999	3:-99277644	None:intergenic
TACATTAAAATGGAAGAAAA+AGG	0.358768	3:-99277634	None:intergenic
TAGTTCGAGATCTTTGTCTC+AGG	0.417360	3:+99277794	MsG0380017664.01.T02:CDS
TACAGGTCTGTCGCGGAGCT+TGG	0.431386	3:+99277693	MsG0380017664.01.T02:intron
TCTTCTCTTCTCCACCGTAC+AGG	0.457256	3:+99277676	MsG0380017664.01.T02:intron
AGTAAGACGCGCTGATGAAA+CGG	0.499949	3:-99277748	None:intergenic
TGATGAAACGGCCGAGTGCA+AGG	0.520941	3:-99277736	None:intergenic
GCGCGTCTTACTTCTTGCCT+CGG	0.528907	3:+99277759	MsG0380017664.01.T02:CDS
GTCACTCCTTCCCTTGCACT+CGG	0.535547	3:+99277725	MsG0380017664.01.T02:CDS
ATGCTTTGCAGTGCCAACCC+TGG	0.558470	3:+99277819	MsG0380017664.01.T02:intron
AGTTCGAGATCTTTGTCTCA+GGG	0.565195	3:+99277795	MsG0380017664.01.T02:CDS
AATGAATCAAACACCAGGGT+TGG	0.573430	3:-99277832	None:intergenic
AATATGCTTACGGATAGAAA+AGG	0.586691	3:-99277878	None:intergenic
GATGAAACGGCCGAGTGCAA+GGG	0.589191	3:-99277735	None:intergenic
GTGGAAATGAATCAAACACC+AGG	0.613690	3:-99277837	None:intergenic
AAACGGCCGAGTGCAAGGGA+AGG	0.634854	3:-99277731	None:intergenic
AACTAGTTGAATCGATTCCG+AGG	0.634871	3:-99277776	None:intergenic
AGCTCCGCGACAGACCTGTA+CGG	0.638529	3:-99277690	None:intergenic
TCCACCGTACAGGTCTGTCG+CGG	0.666992	3:+99277686	MsG0380017664.01.T02:intron
TCCGCGACAGACCTGTACGG+TGG	0.697508	3:-99277687	None:intergenic
TGGAAATGAATCAAACACCA+GGG	0.713475	3:-99277836	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATCAAATTTTTCAAAATTTT+AGG	-	Chr3:99279357-99279376	None:intergenic	10.0%
!!!	TCAAATTTTTCAAAATTTTA+GGG	-	Chr3:99279356-99279375	None:intergenic	10.0%
!!!	TTTGTTTTTTTTTTTATCAT+GGG	+	Chr3:99279876-99279895	MsG0380017664.01.T02:intron	10.0%
!!	ATTAATAGGGTAATTAAAAA+AGG	+	Chr3:99278085-99278104	MsG0380017664.01.T02:intron	15.0%
!!	GTTTATGTTATTAAAAATAG+AGG	+	Chr3:99278427-99278446	MsG0380017664.01.T02:intron	15.0%
!!	TTAATAGGGTAATTAAAAAA+GGG	+	Chr3:99278086-99278105	MsG0380017664.01.T02:intron	15.0%
!!!	GTTTGTTTTTTTTTTTATCA+TGG	+	Chr3:99279875-99279894	MsG0380017664.01.T02:intron	15.0%
!!!	TTCTGCATTTTAATTTATTT+TGG	+	Chr3:99277967-99277986	MsG0380017664.01.T02:intron	15.0%
!!!	TTTATATTTTTACCTAAATC+TGG	+	Chr3:99279123-99279142	MsG0380017664.01.T02:intron	15.0%
!!	AAAAAGATAAACATTAAGCA+AGG	-	Chr3:99280425-99280444	None:intergenic	20.0%
!!	AAAAATACTGAAATGATCTA+TGG	+	Chr3:99279560-99279579	MsG0380017664.01.T02:intron	20.0%
!!	AAATTCTGTTATAAATATGC+TGG	+	Chr3:99278516-99278535	MsG0380017664.01.T02:intron	20.0%
!!	AATAACCTTTATCTACTTAA+AGG	-	Chr3:99279087-99279106	None:intergenic	20.0%
!!	ACAATTAACAATGAAATGAT+CGG	-	Chr3:99280649-99280668	None:intergenic	20.0%
!!	AGGCTATCTAAATAATAAAT+AGG	-	Chr3:99279294-99279313	None:intergenic	20.0%
!!	ATTAAAAATAGAGGTCATAA+TGG	+	Chr3:99278436-99278455	MsG0380017664.01.T02:intron	20.0%
!!	CAAGTTACATAAACAAAAAA+TGG	-	Chr3:99278668-99278687	None:intergenic	20.0%
!!	GAATTAACGTTACATTAAAA+TGG	-	Chr3:99277647-99277666	None:intergenic	20.0%
!!	GTGTAATCATTTCTTTATAA+TGG	+	Chr3:99280623-99280642	MsG0380017664.01.T02:three_prime_UTR	20.0%
!!	GTTTACTTTGTGTATTATTA+TGG	+	Chr3:99279921-99279940	MsG0380017664.01.T02:intron	20.0%
!!	TACATTAAAATGGAAGAAAA+AGG	-	Chr3:99277637-99277656	None:intergenic	20.0%
!!	TATTAATCACCAATAAACAA+TGG	-	Chr3:99278072-99278091	None:intergenic	20.0%
!!	TTAACATAGACAATAATACA+TGG	-	Chr3:99280390-99280409	None:intergenic	20.0%
!!	TTTACAACTCTTACATATAT+AGG	-	Chr3:99279788-99279807	None:intergenic	20.0%
!!!	ATTCCTAAAGCTTTTTTTTA+GGG	+	Chr3:99279323-99279342	MsG0380017664.01.T02:intron	20.0%
!!!	ATTGTTTATTGGTGATTAAT+AGG	+	Chr3:99278071-99278090	MsG0380017664.01.T02:intron	20.0%
!!!	ATTTTCTGAAAGTGTTTTTA+AGG	+	Chr3:99279246-99279265	MsG0380017664.01.T02:intron	20.0%
!!!	CATTTTTTGTTTATGTAACT+TGG	+	Chr3:99278666-99278685	MsG0380017664.01.T02:intron	20.0%
!!!	GCATCTATTTTCAAATTTAA+TGG	-	Chr3:99279693-99279712	None:intergenic	20.0%
!!!	TGAATGTCTTTCATTTTTTA+AGG	+	Chr3:99278829-99278848	MsG0380017664.01.T02:intron	20.0%
!!!	TTGTTTATTGGTGATTAATA+GGG	+	Chr3:99278072-99278091	MsG0380017664.01.T02:intron	20.0%
!!!	TTTAAAATTTCCTCAGAAAT+GGG	+	Chr3:99280442-99280461	MsG0380017664.01.T02:intron	20.0%
!!!	TTTTAAAATTTCCTCAGAAA+TGG	+	Chr3:99280441-99280460	MsG0380017664.01.T02:intron	20.0%
!	AAACTAACCATTCATCAAAT+TGG	-	Chr3:99279405-99279424	None:intergenic	25.0%
!	ATTAAAATGGAAGAAAAAGG+TGG	-	Chr3:99277634-99277653	None:intergenic	25.0%
!	ATTCATTTGTTTCATCTAAG+TGG	+	Chr3:99280143-99280162	MsG0380017664.01.T02:intron	25.0%
!	ATTCTAAATTCTCCAGATTT+AGG	-	Chr3:99279138-99279157	None:intergenic	25.0%
!	CAATTATATACCCATTATGA+TGG	-	Chr3:99280576-99280595	None:intergenic	25.0%
!	GCACTAATATTATATACTCA+GGG	-	Chr3:99280060-99280079	None:intergenic	25.0%
!	TAGGATTTAATACACTTTCA+GGG	-	Chr3:99278120-99278139	None:intergenic	25.0%
!	TGCACTAATATTATATACTC+AGG	-	Chr3:99280061-99280080	None:intergenic	25.0%
!	TGTAGTTCAGGAAAAAAAAA+TGG	-	Chr3:99278900-99278919	None:intergenic	25.0%
!	TTAGGATTTAATACACTTTC+AGG	-	Chr3:99278121-99278140	None:intergenic	25.0%
!!	ATGAATTTTGCATTAATGAG+TGG	-	Chr3:99277912-99277931	None:intergenic	25.0%
!!	ATGCAGTATACATTTTTGTA+AGG	+	Chr3:99278208-99278227	MsG0380017664.01.T02:intron	25.0%
!!	CCTTCTAATTCTGTAATTTT+GGG	+	Chr3:99278732-99278751	MsG0380017664.01.T02:intron	25.0%
!!	TAATTATGTTTCTGTACTCA+TGG	+	Chr3:99278039-99278058	MsG0380017664.01.T02:intron	25.0%
!!	TCCTTCTAATTCTGTAATTT+TGG	+	Chr3:99278731-99278750	MsG0380017664.01.T02:intron	25.0%
!!	TTTTTGTAAGGTTACAGTTT+AGG	+	Chr3:99278220-99278239	MsG0380017664.01.T02:intron	25.0%
!!!	AACTGTTTTTTCAATCTATG+TGG	+	Chr3:99279999-99280018	MsG0380017664.01.T02:intron	25.0%
!!!	CATCATAATGGGTATATAAT+TGG	+	Chr3:99280574-99280593	MsG0380017664.01.T02:three_prime_UTR	25.0%
!!!	GATTCCTAAAGCTTTTTTTT+AGG	+	Chr3:99279322-99279341	MsG0380017664.01.T02:intron	25.0%
!!!	TTCCTAAAGCTTTTTTTTAG+GGG	+	Chr3:99279324-99279343	MsG0380017664.01.T02:intron	25.0%
!!!	TTTTTCAATCTATGTGGATA+GGG	+	Chr3:99280005-99280024	MsG0380017664.01.T02:intron	25.0%
!!!	TTTTTTCAATCTATGTGGAT+AGG	+	Chr3:99280004-99280023	MsG0380017664.01.T02:intron	25.0%
	AATATGCTTACGGATAGAAA+AGG	-	Chr3:99277881-99277900	None:intergenic	30.0%
	AATTACGCCAATTTGATGAA+TGG	+	Chr3:99279395-99279414	MsG0380017664.01.T02:intron	30.0%
	AGAATACGAATGTCAAACAA+GGG	+	Chr3:99279153-99279172	MsG0380017664.01.T02:intron	30.0%
	ATCATGTTCATATGAAACCT+CGG	-	Chr3:99279654-99279673	None:intergenic	30.0%
	ATGTTTGTGAAATTAGTCGT+TGG	-	Chr3:99279446-99279465	None:intergenic	30.0%
	CAAATTTAATGGTACCATCT+AGG	-	Chr3:99279682-99279701	None:intergenic	30.0%
	CCCAAAATTACAGAATTAGA+AGG	-	Chr3:99278735-99278754	None:intergenic	30.0%
	CTAGACCTTTAAGTAGATAA+AGG	+	Chr3:99279079-99279098	MsG0380017664.01.T02:intron	30.0%
	GAAATTTGTATTGAGAAGAC+AGG	+	Chr3:99278336-99278355	MsG0380017664.01.T02:intron	30.0%
	GAGATAAAAAGTAGTATCTG+TGG	-	Chr3:99277859-99277878	None:intergenic	30.0%
	GCACTAATTCATTAGGATTT+AGG	-	Chr3:99278793-99278812	None:intergenic	30.0%
	GTATGAGTAGTCTGTATTAT+AGG	+	Chr3:99279815-99279834	MsG0380017664.01.T02:intron	30.0%
	TAATAGAGTTCTTGTAGTTC+AGG	-	Chr3:99278912-99278931	None:intergenic	30.0%
	TAGAATACGAATGTCAAACA+AGG	+	Chr3:99279152-99279171	MsG0380017664.01.T02:intron	30.0%
	TAGTCAAAAGAGAGTAAAGA+TGG	+	Chr3:99278279-99278298	MsG0380017664.01.T02:intron	30.0%
	TTAGCTATATTTGTGCGATT+AGG	+	Chr3:99277995-99278014	MsG0380017664.01.T02:intron	30.0%
	TTCTGTTATAAATATGCTGG+TGG	+	Chr3:99278519-99278538	MsG0380017664.01.T02:intron	30.0%
	TTGACTAACAGACTAAATCA+TGG	-	Chr3:99278266-99278285	None:intergenic	30.0%
!	AAATGTAGTGTTCTGTCTTT+TGG	-	Chr3:99280212-99280231	None:intergenic	30.0%
!!	GAGTGTATTATTTCTGCAAT+AGG	-	Chr3:99278616-99278635	None:intergenic	30.0%
!!!	CTGAAAGTGTTTTTAAGGAA+AGG	+	Chr3:99279251-99279270	MsG0380017664.01.T02:intron	30.0%
!!!	TCTGTCTTTTGGTTTTTAGT+AGG	-	Chr3:99280201-99280220	None:intergenic	30.0%
	AAATGAGAAGGTCAGTTCAA+AGG	+	Chr3:99278363-99278382	MsG0380017664.01.T02:intron	35.0%
	AACATAAACTCTCCACACTA+TGG	-	Chr3:99278416-99278435	None:intergenic	35.0%
	AATGAGAAGGTCAGTTCAAA+GGG	+	Chr3:99278364-99278383	MsG0380017664.01.T02:intron	35.0%
	ACATAAACTCTCCACACTAT+GGG	-	Chr3:99278415-99278434	None:intergenic	35.0%
	AGAACATACGAAGAATGGAT+AGG	-	Chr3:99280091-99280110	None:intergenic	35.0%
	ATAGATTGTGAAACGTAGAG+TGG	+	Chr3:99279202-99279221	MsG0380017664.01.T02:intron	35.0%
	ATTACACTGTAGCTAGAAGA+TGG	-	Chr3:99280610-99280629	None:intergenic	35.0%
	CTAGAAGAACATACGAAGAA+TGG	-	Chr3:99280096-99280115	None:intergenic	35.0%
	CTTTGACAGACCATCATAAT+GGG	+	Chr3:99280563-99280582	MsG0380017664.01.T02:three_prime_UTR	35.0%
	GAACATGATATGTACCTAGA+TGG	+	Chr3:99279665-99279684	MsG0380017664.01.T02:intron	35.0%
	GATTTGATTAGAGAGAATGC+TGG	-	Chr3:99277527-99277546	None:intergenic	35.0%
	GCTTTGCATGAGAAATTGAA+TGG	+	Chr3:99278688-99278707	MsG0380017664.01.T02:intron	35.0%
	GGAAAGTTGCAATATGCTTA+CGG	-	Chr3:99277891-99277910	None:intergenic	35.0%
	GGATGACATCCATTGTTTAT+TGG	+	Chr3:99278060-99278079	MsG0380017664.01.T02:intron	35.0%
	GTGGTTAAGCAAATGATATG+TGG	+	Chr3:99280162-99280181	MsG0380017664.01.T02:intron	35.0%
	TAACCAAAAAGCAATAACCG+AGG	+	Chr3:99279634-99279653	MsG0380017664.01.T02:intron	35.0%
	TAAGGTTACAGTTTAGGTCA+GGG	+	Chr3:99278226-99278245	MsG0380017664.01.T02:intron	35.0%
	TCATAATGGCAATATCCACA+TGG	+	Chr3:99278450-99278469	MsG0380017664.01.T02:intron	35.0%
	TCTTTGACAGACCATCATAA+TGG	+	Chr3:99280562-99280581	MsG0380017664.01.T02:three_prime_UTR	35.0%
	TGAGAGTGAAAGGATAGAAA+CGG	+	Chr3:99278474-99278493	MsG0380017664.01.T02:intron	35.0%
	TGCCCCTAAAAAAAAGCTTT+AGG	-	Chr3:99279329-99279348	None:intergenic	35.0%
	TGGAAATGAATCAAACACCA+GGG	-	Chr3:99277839-99277858	None:intergenic	35.0%
	TGGTTTCTTCTGTGTTGTAT+AGG	+	Chr3:99278708-99278727	MsG0380017664.01.T02:intron	35.0%
	TTGAACTGACCTTCTCATTT+GGG	-	Chr3:99278363-99278382	None:intergenic	35.0%
	TTTGAACTGACCTTCTCATT+TGG	-	Chr3:99278364-99278383	None:intergenic	35.0%
!	ACACAGAGCACTAATTCATT+AGG	-	Chr3:99278800-99278819	None:intergenic	35.0%
!	TCGTTGGTAAAAGTAATCGT+TGG	-	Chr3:99279430-99279449	None:intergenic	35.0%
!!	AAACCTCGGTTATTGCTTTT+TGG	-	Chr3:99279640-99279659	None:intergenic	35.0%
!!	GCTTTAGGAATCATCTACTA+AGG	-	Chr3:99279314-99279333	None:intergenic	35.0%
!!!	CATTTTTTAAGGCCTTGCAT+AGG	+	Chr3:99278840-99278859	MsG0380017664.01.T02:intron	35.0%
	AAGGCCTTGCATAGGAAATA+GGG	+	Chr3:99278848-99278867	MsG0380017664.01.T02:intron	40.0%
	AAGGTTACAGTTTAGGTCAG+GGG	+	Chr3:99278227-99278246	MsG0380017664.01.T02:intron	40.0%
	AATGAATCAAACACCAGGGT+TGG	-	Chr3:99277835-99277854	None:intergenic	40.0%
	ACCGCGATAACAGATTTGAA+AGG	+	Chr3:99280474-99280493	MsG0380017664.01.T02:intron	40.0%
	AGTTCGAGATCTTTGTCTCA+GGG	+	Chr3:99277795-99277814	MsG0380017664.01.T02:CDS	40.0%
	AGTTTATTACGCTCCACAAG+TGG	-	Chr3:99279722-99279741	None:intergenic	40.0%
	ATGAGAAGGTCAGTTCAAAG+GGG	+	Chr3:99278365-99278384	MsG0380017664.01.T02:intron	40.0%
	ATGGAAGAAAAAGGTGGAAG+AGG	-	Chr3:99277628-99277647	None:intergenic	40.0%
	ATTAAGCAAGGCACATGACA+TGG	-	Chr3:99280413-99280432	None:intergenic	40.0%
	ATTCACTGCGACTTCATTCT+TGG	+	Chr3:99280248-99280267	MsG0380017664.01.T02:intron	40.0%
	ATTTCCTCAGAAATGGGTCT+TGG	+	Chr3:99280448-99280467	MsG0380017664.01.T02:intron	40.0%
	CGATAACAGATTTGAAAGGC+TGG	+	Chr3:99280478-99280497	MsG0380017664.01.T02:intron	40.0%
	GAATCATACAGTTTGTCAGG+TGG	+	Chr3:99278562-99278581	MsG0380017664.01.T02:intron	40.0%
	GAGAGTGAAAGGATAGAAAC+GGG	+	Chr3:99278475-99278494	MsG0380017664.01.T02:intron	40.0%
	GCCTTTCAAATCTGTTATCG+CGG	-	Chr3:99280478-99280497	None:intergenic	40.0%
	GGAAAAGCAGAGCAATGTTA+AGG	+	Chr3:99279223-99279242	MsG0380017664.01.T02:intron	40.0%
	GTAAGGTTACAGTTTAGGTC+AGG	+	Chr3:99278225-99278244	MsG0380017664.01.T02:intron	40.0%
	GTGGAAATGAATCAAACACC+AGG	-	Chr3:99277840-99277859	None:intergenic	40.0%
	TAAGGCCTTGCATAGGAAAT+AGG	+	Chr3:99278847-99278866	MsG0380017664.01.T02:intron	40.0%
	TAGATGCAATAGACCACTTG+TGG	+	Chr3:99279706-99279725	MsG0380017664.01.T02:intron	40.0%
	TAGTTCGAGATCTTTGTCTC+AGG	+	Chr3:99277794-99277813	MsG0380017664.01.T02:CDS	40.0%
	TCTTCCCTATTTCCTATGCA+AGG	-	Chr3:99278855-99278874	None:intergenic	40.0%
	TGAAAGGATAGAAACGGGAT+AGG	+	Chr3:99278480-99278499	MsG0380017664.01.T02:intron	40.0%
	TTTGAAAGGCTGGTGATTGA+TGG	+	Chr3:99280488-99280507	MsG0380017664.01.T02:three_prime_UTR	40.0%
!	AACTAGTTGAATCGATTCCG+AGG	-	Chr3:99277779-99277798	None:intergenic	40.0%
!!	GATCTATGGCTTGTTCTGAT+TGG	+	Chr3:99279574-99279593	MsG0380017664.01.T02:intron	40.0%
!!	GCTCAAAGCGTCATTTTGTT+AGG	-	Chr3:99278139-99278158	None:intergenic	40.0%
!!!	TGCTTTTTGGTTAAGCTCGA+AGG	-	Chr3:99279627-99279646	None:intergenic	40.0%
	AAAGGGTGAGAAGGAGGATT+TGG	-	Chr3:99277564-99277583	None:intergenic	45.0%
	AACTCTCCACACTATGGGTT+CGG	-	Chr3:99278410-99278429	None:intergenic	45.0%
	AAGACAGGACCCAAATGAGA+AGG	+	Chr3:99278351-99278370	MsG0380017664.01.T02:intron	45.0%
	AAGGGTGAGAAGGAGGATTT+GGG	-	Chr3:99277563-99277582	None:intergenic	45.0%
	GAAGAGGATGAGTTACCTGA+CGG	-	Chr3:99277612-99277631	None:intergenic	45.0%
	GGCGAATCATACAGTTTGTC+AGG	+	Chr3:99278559-99278578	MsG0380017664.01.T02:intron	45.0%
	TGAAGTCGCAGTGAATTGAG+CGG	-	Chr3:99280244-99280263	None:intergenic	45.0%
	TTACAGTTTAGGTCAGGGGT+GGG	+	Chr3:99278231-99278250	MsG0380017664.01.T02:intron	45.0%
	TTTGAGGAGAAAGGGTGAGA+AGG	-	Chr3:99277573-99277592	None:intergenic	45.0%
!	AGTAAGACGCGCTGATGAAA+CGG	-	Chr3:99277751-99277770	None:intergenic	45.0%
!	TGAGAAGGAGGATTTGGGTT+TGG	-	Chr3:99277558-99277577	None:intergenic	45.0%
!!	GTGGAGAGAGAAAAGCATCA+AGG	+	Chr3:99278538-99278557	MsG0380017664.01.T02:intron	45.0%
!!!	AGTGCGAGTTTTGAGGAGAA+AGG	-	Chr3:99277582-99277601	None:intergenic	45.0%
!!!	GTGCGAGTTTTGAGGAGAAA+GGG	-	Chr3:99277581-99277600	None:intergenic	45.0%
	ACTCTCCACACTATGGGTTC+GGG	-	Chr3:99278409-99278428	None:intergenic	50.0%
	CACTGCGACTTCATTCTTGG+TGG	+	Chr3:99280251-99280270	MsG0380017664.01.T02:intron	50.0%
	CCAGTAATTCACACACGCAG+GGG	-	Chr3:99278309-99278328	None:intergenic	50.0%
	GAAGTCGCAGTGAATTGAGC+GGG	-	Chr3:99280243-99280262	None:intergenic	50.0%
	GATGAGTTACCTGACGGTGA+CGG	-	Chr3:99277606-99277625	None:intergenic	50.0%
	GCCAGTAATTCACACACGCA+GGG	-	Chr3:99278310-99278329	None:intergenic	50.0%
	GTTACAGTTTAGGTCAGGGG+TGG	+	Chr3:99278230-99278249	MsG0380017664.01.T02:intron	50.0%
	TCCACATGGCTGAGAGTGAA+AGG	+	Chr3:99278464-99278483	MsG0380017664.01.T02:intron	50.0%
	TCCTTTCACTCTCAGCCATG+TGG	-	Chr3:99278468-99278487	None:intergenic	50.0%
	TCTTCTCTTCTCCACCGTAC+AGG	+	Chr3:99277676-99277695	MsG0380017664.01.T02:intron	50.0%
	TGCCAGTAATTCACACACGC+AGG	-	Chr3:99278311-99278330	None:intergenic	50.0%
	TGGAGAGAGCTGTGGACAAT+AGG	+	Chr3:99278582-99278601	MsG0380017664.01.T02:intron	50.0%
	TGTGCCAAGACCCATTTCTG+AGG	-	Chr3:99280455-99280474	None:intergenic	50.0%
!	ACGGGATAGGCATCGTGTAA+CGG	+	Chr3:99278493-99278512	MsG0380017664.01.T02:intron	50.0%
!!	GGAGGATTTGGGTTTGGTGA+TGG	-	Chr3:99277552-99277571	None:intergenic	50.0%
!!	GGATTTGGGTTTGGTGATGG+TGG	-	Chr3:99277549-99277568	None:intergenic	50.0%
!!	TGACGGAAGTGCGAGTTTTG+AGG	-	Chr3:99277589-99277608	None:intergenic	50.0%
	AGTTGCCCGAACCCATAGTG+TGG	+	Chr3:99278401-99278420	MsG0380017664.01.T02:intron	55.0%
	ATGCTTTGCAGTGCCAACCC+TGG	+	Chr3:99277819-99277838	MsG0380017664.01.T02:intron	55.0%
	CCCCTGCGTGTGTGAATTAC+TGG	+	Chr3:99278306-99278325	MsG0380017664.01.T02:intron	55.0%
	GAGGAGAAAGGGTGAGAAGG+AGG	-	Chr3:99277570-99277589	None:intergenic	55.0%
	GATGAAACGGCCGAGTGCAA+GGG	-	Chr3:99277738-99277757	None:intergenic	55.0%
	GCGCGTCTTACTTCTTGCCT+CGG	+	Chr3:99277759-99277778	MsG0380017664.01.T02:CDS	55.0%
	GTCACTCCTTCCCTTGCACT+CGG	+	Chr3:99277725-99277744	MsG0380017664.01.T02:CDS	55.0%
	TGATGAAACGGCCGAGTGCA+AGG	-	Chr3:99277739-99277758	None:intergenic	55.0%
	TTGTCAGGTGGAGAGAGCTG+TGG	+	Chr3:99278574-99278593	MsG0380017664.01.T02:intron	55.0%
	AAACGGCCGAGTGCAAGGGA+AGG	-	Chr3:99277734-99277753	None:intergenic	60.0%
	AGCTCCGCGACAGACCTGTA+CGG	-	Chr3:99277693-99277712	None:intergenic	60.0%
	GTTTAGGTCAGGGGTGGGTG+TGG	+	Chr3:99278236-99278255	MsG0380017664.01.T02:intron	60.0%
	TACAGGTCTGTCGCGGAGCT+TGG	+	Chr3:99277693-99277712	MsG0380017664.01.T02:intron	60.0%
	TCCACCGTACAGGTCTGTCG+CGG	+	Chr3:99277686-99277705	MsG0380017664.01.T02:intron	60.0%
	CTCGCACTTCCGTCACCGTC+AGG	+	Chr3:99277594-99277613	MsG0380017664.01.T02:CDS	65.0%
	TCCGCGACAGACCTGTACGG+TGG	-	Chr3:99277690-99277709	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	99277494	99280676	99277494	ID=MsG0380017664.01;Name=MsG0380017664.01
Chr3	mRNA	99277494	99280676	99277494	ID=MsG0380017664.01.T01;Parent=MsG0380017664.01;Name=MsG0380017664.01.T01;_AED=0.46;_eAED=0.46;_QI=0\|1\|0.66\|1\|0\|0\|3\|260\|90
Chr3	exon	99277698	99277889	99277698	ID=MsG0380017664.01.T01:exon:35643;Parent=MsG0380017664.01.T01
Chr3	CDS	99277494	99277615	99277494	ID=MsG0380017664.01.T01:cds;Parent=MsG0380017664.01.T01
Chr3	CDS	99277698	99277848	99277698	ID=MsG0380017664.01.T01:cds;Parent=MsG0380017664.01.T01
Chr3	three_prime_UTR	99277849	99277889	99277849	ID=MsG0380017664.01.T01:three_prime_utr;Parent=MsG0380017664.01.T01
Chr3	three_prime_UTR	99280458	99280676	99280458	ID=MsG0380017664.01.T01:three_prime_utr;Parent=MsG0380017664.01.T01
Chr3	mRNA	99277494	99280676	99277494	ID=MsG0380017664.01.T02;Parent=MsG0380017664.01;Name=MsG0380017664.01.T02;_AED=0.47;_eAED=0.47;_QI=0\|0.5\|0.33\|1\|0\|0\|3\|193\|88
Chr3	exon	99277698	99277816	99277698	ID=MsG0380017664.01.T02:exon:35645;Parent=MsG0380017664.01.T02
Chr3	CDS	99277494	99277615	99277494	ID=MsG0380017664.01.T02:cds;Parent=MsG0380017664.01.T02
Chr3	CDS	99277698	99277816	99277698	ID=MsG0380017664.01.T02:cds;Parent=MsG0380017664.01.T02
Chr3	CDS	99280458	99280483	99280458	ID=MsG0380017664.01.T02:cds;Parent=MsG0380017664.01.T02
Chr3	three_prime_UTR	99280484	99280676	99280484	ID=MsG0380017664.01.T02:three_prime_utr;Parent=MsG0380017664.01.T02
Chr3	mRNA	99277621	99277848	99277621	ID=MsG0380017664.01.T03;Parent=MsG0380017664.01;Name=MsG0380017664.01.T03;_AED=0.48;_eAED=0.48;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|75
Chr3	exon	99277621	99277848	99277621	ID=MsG0380017664.01.T03:exon:35646;Parent=MsG0380017664.01.T03
Chr3	CDS	99277621	99277848	99277621	ID=MsG0380017664.01.T03:cds;Parent=MsG0380017664.01.T03

Gene Sequence

>MsG0380017664.01.T03

TCATCCTCTTCCACCTTTTTCTTCCATTTTAATGTAACGTTAATTCTTACTCTTCTCTTCTCTTCTCCACCGTACAGGTCTGTCGCGGAGCTTGGTTGCGTGCAGTCACTCCTTCCCTTGCACTCGGCCGTTTCATCAGCGCGTCTTACTTCTTGCCTCGGAATCGATTCAACTAGTTCGAGATCTTTGTCTCAGGGTATGCTTTGCAGTGCCAACCCTGGTGTTTGA

>MsG0380017664.01.T01

ATGGCTTCTCGTTACAGATCATTTTCGCAACCAGCATTCTCTCTAATCAAATCCACCATCACCAAACCCAAATCCTCCTTCTCACCCTTTCTCCTCAAAACTCGCACTTCCGTCACCGTCAGGTCTGTCGCGGAGCTTGGTTGCGTGCAGTCACTCCTTCCCTTGCACTCGGCCGTTTCATCAGCGCGTCTTACTTCTTGCCTCGGAATCGATTCAACTAGTTCGAGATCTTTGTCTCAGGGTATGCTTTGCAGTGCCAACCCTGGTGTTTGA

>MsG0380017664.01.T02

Protein sequence

>MsG0380017664.01.T03

SSSSTFFFHFNVTLILTLLFSSPPYRSVAELGCVQSLLPLHSAVSSARLTSCLGIDSTSSRSLSQGMLCSANPGV*

>MsG0380017664.01.T01

MASRYRSFSQPAFSLIKSTITKPKSSFSPFLLKTRTSVTVRSVAELGCVQSLLPLHSAVSSARLTSCLGIDSTSSRSLSQGMLCSANPGV*

>MsG0380017664.01.T02

MASRYRSFSQPAFSLIKSTITKPKSSFSPFLLKTRTSVTVRSVAELGCVQSLLPLHSAVSSARLTSCLGIDSTSSRSLSQEMGLGTPR*