AlfalfaGEDB | MsG0680034722.01

M. sativa cultivar ZhongmuNo.1 / MsG0680034722.01

KEGG: -
GO: GO:0005515 GO:0007165
PFAM: PF01582

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034722.01.T01	AFK40105.1	79.545	132	27	0	49	180	1	132	2.64E-61	199

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034722.01.T01	A0A290U7C4	52.941	119	56	0	58	176	3	121	1.34E-34	132

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034722.01.T01	I3SIL3	79.545	132	27	0	49	180	1	132	1.26e-61	199

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180006000.01	MsG0680034722.01	0.818628	1.774738e-52	1.335395e-49
MsG0280008280.01	MsG0680034722.01	0.815593	8.539894e-52	5.912988e-49
MsG0280009514.01	MsG0680034722.01	0.832419	9.555567e-56	1.067457e-52
MsG0280010779.01	MsG0680034722.01	0.834342	3.167405e-56	3.748214e-53
MsG0280011258.01	MsG0680034722.01	0.804983	1.662280e-49	8.692298e-47
MsG0280011282.01	MsG0680034722.01	0.838672	2.502648e-57	3.376021e-54
MsG0380015677.01	MsG0680034722.01	0.817926	2.558814e-52	1.888621e-49
MsG0380016703.01	MsG0680034722.01	0.818222	2.193436e-52	1.632053e-49
MsG0380017372.01	MsG0680034722.01	0.803802	2.929587e-49	1.486021e-46
MsG0480020965.01	MsG0680034722.01	0.810917	9.080187e-51	5.544308e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034722.01.T01	MTR_6g072460	79.699	133	26	1	49	180	1	133	6.10e-62	206
MsG0680034722.01.T01	MTR_6g072460	79.699	133	26	1	49	180	1	133	3.27e-61	206
MsG0680034722.01.T01	MTR_6g072760	80.303	132	26	0	49	180	1	132	3.10e-60	202
MsG0680034722.01.T01	MTR_6g073650	74.627	134	32	2	49	180	1	134	5.35e-60	186
MsG0680034722.01.T01	MTR_6g073250	74.627	134	32	2	49	180	1	134	1.57e-54	187
MsG0680034722.01.T01	MTR_6g074885	68.182	132	41	1	49	180	1	131	2.91e-54	170
MsG0680034722.01.T01	MTR_6g072730	61.379	145	54	1	49	193	1	143	6.65e-54	183
MsG0680034722.01.T01	MTR_6g074780	68.613	137	42	1	49	185	1	136	1.16e-53	184
MsG0680034722.01.T01	MTR_6g478010	67.424	132	42	1	49	180	1	131	1.41e-53	177
MsG0680034722.01.T01	MTR_6g071925	68.657	134	42	0	47	180	71	204	5.79e-53	182

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034722.01.T01	AT1G72930	53.398	103	48	0	67	169	9	111	5.45e-31	111
MsG0680034722.01.T01	AT1G72930	53.398	103	48	0	67	169	9	111	1.47e-30	110
MsG0680034722.01.T01	AT4G09430	48.760	121	62	0	55	175	3	123	3.11e-30	116
MsG0680034722.01.T01	AT1G17615	52.381	105	50	0	67	171	15	119	8.00e-30	113
MsG0680034722.01.T01	AT5G36930	47.009	117	61	1	65	180	15	131	2.60e-29	114
MsG0680034722.01.T01	AT5G36930	47.788	113	58	1	65	176	12	124	2.83e-29	114
MsG0680034722.01.T01	AT5G36930	47.788	113	58	1	65	176	12	124	2.83e-29	114
MsG0680034722.01.T01	AT5G36930	47.788	113	58	1	65	176	12	124	2.92e-29	114
MsG0680034722.01.T01	AT1G72900	49.587	121	57	2	59	178	2	119	4.21e-29	111
MsG0680034722.01.T01	AT1G72920	44.531	128	60	2	51	178	1	117	7.65e-29	108

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Find 45 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCGACAGTGGAAGGATAT+TGG	0.357712	6:+93427190	MsG0680034722.01.T01:intron
AAGCTCCTTGTCATCCATGA+AGG	0.557538	6:-93427442	None:intergenic
AAGGAAGAAGAGGAGGAAGA+AGG	0.494328	6:-93427312	None:intergenic
AAGGATATTGGAGGAAGAGG+CGG	0.674967	6:+93427202	MsG0680034722.01.T01:CDS
AAGTGCTTTATAGTGACTGC+CGG	0.616332	6:-93427400	None:intergenic
ACCATATGAGAAGGAAGAAG+AGG	0.561610	6:-93427322	None:intergenic
ACGTACGACATCACAATAAC+AGG	0.383593	6:+93427652	MsG0680034722.01.T01:CDS
AGGGGTACCGACACTCGATC+CGG	0.530238	6:+93427372	MsG0680034722.01.T01:CDS
ATAGCCATGAGAGTTTGGTC+TGG	0.596651	6:-93427282	None:intergenic
ATAGTGACTGCCGGTGAAGC+CGG	0.466668	6:-93427391	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGACTTGAAGCTTCAAA+AGG	+	Chr6:93425364-93425383	MsG0680034722.01.T01:intron	30.0%
AGTCTATCAAGATTTATCGT+TGG	-	Chr6:93424652-93424671	None:intergenic	30.0%
CAAATAAAACCACCTTCAAA+GGG	+	Chr6:93425578-93425597	MsG0680034722.01.T01:intron	30.0%
CAAGTCCTATAAAAATGGAA+AGG	-	Chr6:93426194-93426213	None:intergenic	30.0%
CAGTAAAGGTTATCTTTAGT+TGG	+	Chr6:93425529-93425548	MsG0680034722.01.T01:intron	30.0%
CATAGAAAACTTGAAGAACA+AGG	-	Chr6:93427617-93427636	None:intergenic	30.0%
CTGTTTGGCATTATATTCTT+AGG	-	Chr6:93425414-93425433	None:intergenic	30.0%
CTTATGGAAAAATCTACATG+AGG	+	Chr6:93426225-93426244	MsG0680034722.01.T01:intron	30.0%
GTCTATCAAGATTTATCGTT+GGG	-	Chr6:93424651-93424670	None:intergenic	30.0%
TTGTACAATAATTGTGTGAC+TGG	+	Chr6:93426103-93426122	MsG0680034722.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	93424587	93427764	93424587	ID=MsG0680034722.01;Name=MsG0680034722.01
Chr6	mRNA	93424587	93427764	93424587	ID=MsG0680034722.01.T01;Parent=MsG0680034722.01;Name=MsG0680034722.01.T01;_AED=0.53;_eAED=0.59;_QI=0\|0\|0\|0.5\|0\|0\|2\|0\|203
Chr6	exon	93424587	93424632	93424587	ID=MsG0680034722.01.T01:exon:13082;Parent=MsG0680034722.01.T01
Chr6	exon	93427199	93427764	93427199	ID=MsG0680034722.01.T01:exon:13083;Parent=MsG0680034722.01.T01
Chr6	CDS	93424587	93424632	93424587	ID=MsG0680034722.01.T01:cds;Parent=MsG0680034722.01.T01
Chr6	CDS	93427199	93427764	93427199	ID=MsG0680034722.01.T01:cds;Parent=MsG0680034722.01.T01

Gene Sequence

>MsG0680034722.01.T01

ATGGAATTTCGAACACACCCCGTCACACTCGGAGCCAATGGGAAGCTGGAAGGATATTGGAGGAAGAGGCGGTACAATAATTGTGTGACTGTTCTTGTAATTTTTACAGATCTGATAGTAAACAATACTCCAGACCAAACTCTCATGGCTATGCAATCACCTTCTTCCTCCTCTTCTTCCTTCTCATATGGTTTCAGCTTCGATGTGTTCATTAGTTTCAGGGGTACCGACACTCGATCCGGCTTCACCGGCAGTCACTATAAAGCACTTTGTGACAAGGGAATCCGAACCTTCATGGATGACAAGGAGCTTCAGAAAGGTGACGAAATCACACCTTCGCTCCTCAAGAGCATTGAAGACTCGAGGATTGTTGTTATTGTATTCTCGAAGAACTATGCTACTTCATCATTTTGTCTGGATGAACTTGTCCACATCATTAACTACTTCAAGGAAAAGAGTCGCCTTGTTCTTCAAGTTTTCTATGATGTGGAACCTTCTGACGTACGACATCACAATAACAGGTATGGTGATGTAATATCCACACTAAACGTATCTAGAAAGTTTAGCGTGTGCATTAGTTTAGTACTGGATACATTAAAATTTACAACATAA

Protein sequence

>MsG0680034722.01.T01

MEFRTHPVTLGANGKLEGYWRKRRYNNCVTVLVIFTDLIVNNTPDQTLMAMQSPSSSSSSFSYGFSFDVFISFRGTDTRSGFTGSHYKALCDKGIRTFMDDKELQKGDEITPSLLKSIEDSRIVVIVFSKNYATSSFCLDELVHIINYFKEKSRLVLQVFYDVEPSDVRHHNNRYGDVISTLNVSRKFSVCISLVLDTLKFTT*