Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017372.01.T01 | XP_003603305.1 | 97.436 | 156 | 4 | 0 | 1 | 156 | 197 | 352 | 2.45E-100 | 307 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017372.01.T01 | Q9CAG5 | 37.681 | 138 | 75 | 4 | 23 | 156 | 534 | 664 | 1.05E-14 | 73.6 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017372.01.T01 | G7J9V6 | 97.436 | 156 | 4 | 0 | 1 | 156 | 197 | 352 | 1.17e-100 | 307 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048856.01 | MsG0380017372.01 | 0.814178 | 1.758697e-51 | 1.171761e-48 |
MsG0180000142.01 | MsG0380017372.01 | 0.801844 | 7.432332e-49 | 3.586163e-46 |
MsG0180000195.01 | MsG0380017372.01 | 0.829033 | 6.453963e-55 | 6.526789e-52 |
MsG0180000353.01 | MsG0380017372.01 | 0.822067 | 2.888423e-53 | 2.391957e-50 |
MsG0180000360.01 | MsG0380017372.01 | 0.816138 | 6.454808e-52 | 4.536405e-49 |
MsG0180001565.01 | MsG0380017372.01 | 0.819821 | 9.496618e-53 | 7.386596e-50 |
MsG0180003281.01 | MsG0380017372.01 | 0.810739 | 9.923328e-51 | 6.030106e-48 |
MsG0180003361.01 | MsG0380017372.01 | 0.809349 | 1.977389e-50 | 1.158286e-47 |
MsG0180003696.01 | MsG0380017372.01 | 0.800541 | 1.373256e-48 | 6.410892e-46 |
MsG0180003786.01 | MsG0380017372.01 | 0.823846 | 1.111751e-53 | 9.684045e-51 |
MsG0180003920.01 | MsG0380017372.01 | 0.821682 | 3.546593e-53 | 2.905207e-50 |
MsG0180004264.01 | MsG0380017372.01 | 0.805014 | 1.637464e-49 | 8.569180e-47 |
MsG0180004320.01 | MsG0380017372.01 | 0.811119 | 8.209272e-51 | 5.039043e-48 |
MsG0180004711.01 | MsG0380017372.01 | 0.803597 | 3.231390e-49 | 1.630556e-46 |
MsG0180004754.01 | MsG0380017372.01 | 0.804166 | 2.460597e-49 | 1.259854e-46 |
MsG0180005575.01 | MsG0380017372.01 | 0.802152 | 6.425268e-49 | 3.124559e-46 |
MsG0180005664.01 | MsG0380017372.01 | 0.815551 | 8.722974e-52 | 6.032826e-49 |
MsG0180006000.01 | MsG0380017372.01 | 0.862558 | 4.655587e-64 | 1.369095e-60 |
MsG0180006023.01 | MsG0380017372.01 | 0.804458 | 2.139332e-49 | 1.103612e-46 |
MsG0180006260.01 | MsG0380017372.01 | 0.810518 | 1.107784e-50 | 6.691653e-48 |
MsG0280006311.01 | MsG0380017372.01 | 0.810939 | 8.982014e-51 | 5.487618e-48 |
MsG0280010650.01 | MsG0380017372.01 | 0.811791 | 5.867245e-51 | 3.665852e-48 |
MsG0280010779.01 | MsG0380017372.01 | 0.823325 | 1.471771e-53 | 1.263141e-50 |
MsG0280010785.01 | MsG0380017372.01 | 0.801351 | 9.382480e-49 | 4.470919e-46 |
MsG0280011014.01 | MsG0380017372.01 | 0.836374 | 9.713494e-57 | 1.221800e-53 |
MsG0280011034.01 | MsG0380017372.01 | 0.817293 | 3.554131e-52 | 2.577985e-49 |
MsG0280011154.01 | MsG0380017372.01 | 0.802730 | 4.882867e-49 | 2.409846e-46 |
MsG0280011258.01 | MsG0380017372.01 | 0.823512 | 1.330677e-53 | 1.148182e-50 |
MsG0280011282.01 | MsG0380017372.01 | 0.847353 | 1.219966e-59 | 2.162421e-56 |
MsG0380012471.01 | MsG0380017372.01 | 0.850056 | 2.173162e-60 | 4.204327e-57 |
MsG0380013834.01 | MsG0380017372.01 | 0.800414 | 1.457301e-48 | 6.781720e-46 |
MsG0380014289.01 | MsG0380017372.01 | 0.824766 | 6.755680e-54 | 6.041347e-51 |
MsG0380014387.01 | MsG0380017372.01 | 0.829559 | 4.811817e-55 | 4.941846e-52 |
MsG0380015548.01 | MsG0380017372.01 | 0.808421 | 3.123283e-50 | 1.785038e-47 |
MsG0380015677.01 | MsG0380017372.01 | 0.827331 | 1.660014e-54 | 1.597771e-51 |
MsG0380015808.01 | MsG0380017372.01 | 0.811783 | 5.890264e-51 | 3.679453e-48 |
MsG0380016140.01 | MsG0380017372.01 | 0.848585 | 5.582475e-60 | 1.029328e-56 |
MsG0380016247.01 | MsG0380017372.01 | 0.835934 | 1.256839e-56 | 1.559917e-53 |
MsG0380016703.01 | MsG0380017372.01 | 0.838430 | 2.889197e-57 | 3.868946e-54 |
MsG0380016919.01 | MsG0380017372.01 | 0.833700 | 4.586624e-56 | 5.323284e-53 |
MsG0380016920.01 | MsG0380017372.01 | 0.802131 | 6.488184e-49 | 3.153476e-46 |
MsG0380016994.01 | MsG0380017372.01 | 0.851345 | 9.427952e-61 | 1.902724e-57 |
MsG0380017372.01 | MsG0480018163.01 | 0.800686 | 1.282780e-48 | 6.010598e-46 |
MsG0380017372.01 | MsG0480018230.01 | 0.800594 | 1.339493e-48 | 6.261665e-46 |
MsG0380017372.01 | MsG0480018397.01 | 0.814888 | 1.224550e-51 | 8.316601e-49 |
MsG0380017372.01 | MsG0480018894.01 | 0.800948 | 1.134383e-48 | 5.350959e-46 |
MsG0380017372.01 | MsG0480018918.01 | 0.800815 | 1.207262e-48 | 5.675221e-46 |
MsG0380017372.01 | MsG0480018919.01 | 0.801717 | 7.893995e-49 | 3.796428e-46 |
MsG0380017372.01 | MsG0480019635.01 | 0.809370 | 1.956364e-50 | 1.146610e-47 |
MsG0380017372.01 | MsG0480019710.01 | 0.807260 | 5.512784e-50 | 3.056412e-47 |
MsG0380017372.01 | MsG0480019922.01 | 0.829564 | 4.796417e-55 | 4.926930e-52 |
MsG0380017372.01 | MsG0480020495.01 | 0.815150 | 1.071281e-51 | 7.327523e-49 |
MsG0380017372.01 | MsG0480020909.01 | 0.806547 | 7.803088e-50 | 4.247156e-47 |
MsG0380017372.01 | MsG0480020965.01 | 0.802920 | 4.462538e-49 | 2.212970e-46 |
MsG0380017372.01 | MsG0480021156.01 | 0.808316 | 3.288344e-50 | 1.874243e-47 |
MsG0380017372.01 | MsG0480021350.01 | 0.817884 | 2.615697e-52 | 1.928323e-49 |
MsG0380017372.01 | MsG0480022325.01 | 0.811805 | 5.826433e-51 | 3.641641e-48 |
MsG0380017372.01 | MsG0480022755.01 | 0.800515 | 1.389840e-48 | 6.484201e-46 |
MsG0380017372.01 | MsG0480022796.01 | 0.800488 | 1.407888e-48 | 6.563759e-46 |
MsG0380017372.01 | MsG0480023341.01 | 0.801316 | 9.534944e-49 | 4.539647e-46 |
MsG0380017372.01 | MsG0480023463.01 | 0.828058 | 1.110351e-54 | 1.091513e-51 |
MsG0380017372.01 | MsG0480023500.01 | 0.800279 | 1.552461e-48 | 7.199785e-46 |
MsG0380017372.01 | MsG0480023620.01 | 0.826399 | 2.771576e-54 | 2.596367e-51 |
MsG0380017372.01 | MsG0580024035.01 | 0.826223 | 3.052074e-54 | 2.844816e-51 |
MsG0380017372.01 | MsG0580024489.01 | 0.833122 | 6.394030e-56 | 7.294979e-53 |
MsG0380017372.01 | MsG0580024758.01 | 0.802065 | 6.694953e-49 | 3.248483e-46 |
MsG0380017372.01 | MsG0580025352.01 | 0.826034 | 3.385383e-54 | 3.138549e-51 |
MsG0380017372.01 | MsG0580025614.01 | 0.822332 | 2.506388e-53 | 2.091646e-50 |
MsG0380017372.01 | MsG0580026002.01 | 0.816252 | 6.084748e-52 | 4.289886e-49 |
MsG0380017372.01 | MsG0580026593.01 | 0.812735 | 3.650003e-51 | 2.339015e-48 |
MsG0380017372.01 | MsG0580026610.01 | 0.814646 | 1.385600e-51 | 9.349779e-49 |
MsG0380017372.01 | MsG0580027208.01 | 0.814118 | 1.813163e-51 | 1.206078e-48 |
MsG0380017372.01 | MsG0580029640.01 | 0.841992 | 3.393366e-58 | 5.073272e-55 |
MsG0380017372.01 | MsG0580029712.01 | 0.806569 | 7.718930e-50 | 4.203669e-47 |
MsG0380017372.01 | MsG0580029729.01 | 0.828854 | 7.130421e-55 | 7.172895e-52 |
MsG0380017372.01 | MsG0680030615.01 | 0.813009 | 3.179022e-51 | 2.051986e-48 |
MsG0380017372.01 | MsG0680030949.01 | 0.803921 | 2.767470e-49 | 1.408183e-46 |
MsG0380017372.01 | MsG0680031353.01 | 0.803197 | 3.910750e-49 | 1.953118e-46 |
MsG0380017372.01 | MsG0680031384.01 | 0.815684 | 8.148653e-52 | 5.656312e-49 |
MsG0380017372.01 | MsG0680031506.01 | 0.814135 | 1.797424e-51 | 1.196203e-48 |
MsG0380017372.01 | MsG0680034722.01 | 0.803802 | 2.929587e-49 | 1.486021e-46 |
MsG0380017372.01 | MsG0680035346.01 | 0.810192 | 1.302241e-50 | 7.798770e-48 |
MsG0380017372.01 | MsG0680035692.01 | 0.830112 | 3.526990e-55 | 3.681136e-52 |
MsG0380017372.01 | MsG0780036477.01 | 0.847787 | 9.267890e-60 | 1.665671e-56 |
MsG0380017372.01 | MsG0780036752.01 | 0.833758 | 4.437479e-56 | 5.159495e-53 |
MsG0380017372.01 | MsG0780036815.01 | 0.808627 | 2.822104e-50 | 1.621515e-47 |
MsG0380017372.01 | MsG0780038386.01 | 0.828331 | 9.542405e-55 | 9.454656e-52 |
MsG0380017372.01 | MsG0780038401.01 | 0.802726 | 4.893204e-49 | 2.414690e-46 |
MsG0380017372.01 | MsG0780038424.01 | 0.824891 | 6.313624e-54 | 5.666268e-51 |
MsG0380017372.01 | MsG0780038602.01 | 0.816458 | 5.473104e-52 | 3.880018e-49 |
MsG0380017372.01 | MsG0780038603.01 | 0.805798 | 1.121476e-49 | 5.988555e-47 |
MsG0380017372.01 | MsG0780039137.01 | 0.826697 | 2.353578e-54 | 2.223545e-51 |
MsG0380017372.01 | MsG0780039655.01 | 0.833604 | 4.847221e-56 | 5.609961e-53 |
MsG0380017372.01 | MsG0780039712.01 | 0.824058 | 9.914608e-54 | 8.686986e-51 |
MsG0380017372.01 | MsG0780039866.01 | 0.808313 | 3.293510e-50 | 1.876990e-47 |
MsG0380017372.01 | MsG0780040057.01 | 0.819854 | 9.331868e-53 | 7.265084e-50 |
MsG0380017372.01 | MsG0780040488.01 | 0.811683 | 6.192106e-51 | 3.857629e-48 |
MsG0380017372.01 | MsG0780040529.01 | 0.816728 | 4.761824e-52 | 3.400933e-49 |
MsG0380017372.01 | MsG0780040926.01 | 0.810549 | 1.090766e-50 | 6.594268e-48 |
MsG0380017372.01 | MsG0780041559.01 | 0.802326 | 5.915408e-49 | 2.889596e-46 |
MsG0380017372.01 | MsG0880042836.01 | 0.814990 | 1.162646e-51 | 7.918407e-49 |
MsG0380017372.01 | MsG0880042961.01 | 0.824263 | 8.872990e-54 | 7.819763e-51 |
MsG0380017372.01 | MsG0880043034.01 | 0.827760 | 1.309070e-54 | 1.275613e-51 |
MsG0380017372.01 | MsG0880043491.01 | 0.822723 | 2.033172e-53 | 1.715679e-50 |
MsG0380017372.01 | MsG0880043516.01 | 0.808575 | 2.895842e-50 | 1.661670e-47 |
MsG0380017372.01 | MsG0880043547.01 | 0.802729 | 4.885472e-49 | 2.411086e-46 |
MsG0380017372.01 | MsG0880043614.01 | 0.825840 | 3.763818e-54 | 3.470410e-51 |
MsG0380017372.01 | MsG0880044510.01 | 0.809385 | 1.942509e-50 | 1.138925e-47 |
MsG0380017372.01 | MsG0880044542.01 | 0.801034 | 1.089204e-48 | 5.149224e-46 |
MsG0380017372.01 | MsG0880044782.01 | 0.818113 | 2.322388e-52 | 1.722833e-49 |
MsG0380017372.01 | MsG0880045506.01 | 0.810584 | 1.071751e-50 | 6.485700e-48 |
MsG0380017372.01 | MsG0880045691.01 | 0.817589 | 3.049736e-52 | 2.230102e-49 |
MsG0380017372.01 | MsG0880045838.01 | 0.824256 | 8.906801e-54 | 7.847913e-51 |
MsG0380017372.01 | MsG0880046012.01 | 0.814074 | 1.854264e-51 | 1.231984e-48 |
MsG0380017372.01 | MsG0880046479.01 | 0.803812 | 2.916048e-49 | 1.479523e-46 |
MsG0380017372.01 | MsG0880046762.01 | 0.810050 | 1.397897e-50 | 8.341111e-48 |
MsG0380017372.01 | MsG0880046803.01 | 0.810950 | 8.933460e-51 | 5.459646e-48 |
MsG0380017372.01 | MsG0880047226.01 | 0.825122 | 5.568819e-54 | 5.030544e-51 |
MsG0280006712.01 | MsG0380017372.01 | 0.812526 | 4.055577e-51 | 2.584709e-48 |
MsG0280007452.01 | MsG0380017372.01 | 0.813395 | 2.615855e-51 | 1.706330e-48 |
MsG0280008280.01 | MsG0380017372.01 | 0.825653 | 4.169241e-54 | 3.823593e-51 |
MsG0280008615.01 | MsG0380017372.01 | 0.808101 | 3.654294e-50 | 2.070980e-47 |
MsG0280009514.01 | MsG0380017372.01 | 0.858550 | 7.629898e-63 | 1.954591e-59 |
MsG0280009794.01 | MsG0380017372.01 | 0.821362 | 4.204000e-53 | 3.412890e-50 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017372.01.T01 | MTR_3g106140 | 97.436 | 156 | 4 | 0 | 1 | 156 | 197 | 352 | 2.97e-104 | 307 |
MsG0380017372.01.T01 | MTR_1g014420 | 76.282 | 156 | 37 | 0 | 1 | 156 | 216 | 371 | 1.38e-74 | 231 |
MsG0380017372.01.T01 | MTR_8g080280 | 36.170 | 141 | 80 | 3 | 20 | 156 | 533 | 667 | 1.64e-16 | 75.9 |
MsG0380017372.01.T01 | MTR_5g079550 | 32.886 | 149 | 89 | 3 | 12 | 156 | 113 | 254 | 1.31e-14 | 70.1 |
MsG0380017372.01.T01 | MTR_3g085610 | 34.375 | 160 | 93 | 5 | 1 | 156 | 514 | 665 | 3.28e-12 | 63.5 |
MsG0380017372.01.T01 | MTR_4g485520 | 36.620 | 142 | 78 | 5 | 17 | 155 | 304 | 436 | 7.80e-12 | 62.4 |
MsG0380017372.01.T01 | MTR_4g063800 | 34.532 | 139 | 81 | 4 | 17 | 153 | 452 | 582 | 7.92e-12 | 62.4 |
MsG0380017372.01.T01 | MTR_4g485520 | 36.620 | 142 | 78 | 5 | 17 | 155 | 472 | 604 | 7.97e-12 | 62.4 |
MsG0380017372.01.T01 | MTR_2g015870 | 39.362 | 94 | 57 | 0 | 63 | 156 | 227 | 320 | 9.30e-12 | 62.0 |
MsG0380017372.01.T01 | MTR_5g069340 | 37.008 | 127 | 70 | 2 | 14 | 136 | 131 | 251 | 1.11e-11 | 61.6 |
MsG0380017372.01.T01 | MTR_3g067685 | 34.862 | 109 | 61 | 2 | 32 | 136 | 154 | 256 | 1.23e-11 | 61.6 |
MsG0380017372.01.T01 | MTR_7g059405 | 32.353 | 136 | 82 | 3 | 1 | 136 | 447 | 572 | 5.42e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017372.01.T01 | AT4G31890 | 72.436 | 156 | 41 | 1 | 1 | 156 | 233 | 386 | 2.40e-75 | 233 |
MsG0380017372.01.T01 | AT4G31890 | 72.436 | 156 | 41 | 1 | 1 | 156 | 233 | 386 | 2.40e-75 | 233 |
MsG0380017372.01.T01 | AT4G31890 | 72.436 | 156 | 41 | 1 | 1 | 156 | 233 | 386 | 2.40e-75 | 233 |
MsG0380017372.01.T01 | AT2G25130 | 68.590 | 156 | 47 | 1 | 1 | 156 | 200 | 353 | 4.56e-69 | 216 |
MsG0380017372.01.T01 | AT1G67530 | 37.681 | 138 | 75 | 4 | 23 | 156 | 534 | 664 | 1.07e-15 | 73.6 |
MsG0380017372.01.T01 | AT1G67530 | 37.681 | 138 | 75 | 4 | 23 | 156 | 534 | 664 | 1.07e-15 | 73.6 |
MsG0380017372.01.T01 | AT1G67530 | 37.681 | 138 | 75 | 4 | 23 | 156 | 534 | 664 | 1.07e-15 | 73.6 |
MsG0380017372.01.T01 | AT1G24330 | 36.765 | 136 | 78 | 3 | 23 | 156 | 534 | 663 | 7.76e-14 | 68.2 |
MsG0380017372.01.T01 | AT1G24330 | 36.765 | 136 | 78 | 3 | 23 | 156 | 534 | 663 | 7.76e-14 | 68.2 |
MsG0380017372.01.T01 | AT2G28830 | 35.252 | 139 | 80 | 4 | 17 | 153 | 386 | 516 | 1.76e-13 | 67.4 |
MsG0380017372.01.T01 | AT2G23140 | 33.103 | 145 | 88 | 4 | 13 | 156 | 449 | 585 | 7.09e-13 | 65.5 |
MsG0380017372.01.T01 | AT2G23140 | 33.103 | 145 | 88 | 4 | 13 | 156 | 449 | 585 | 7.09e-13 | 65.5 |
MsG0380017372.01.T01 | AT2G23140 | 33.103 | 145 | 88 | 4 | 13 | 156 | 641 | 777 | 7.24e-13 | 65.5 |
MsG0380017372.01.T01 | AT2G23140 | 33.103 | 145 | 88 | 4 | 13 | 156 | 638 | 774 | 7.30e-13 | 65.5 |
MsG0380017372.01.T01 | AT2G23140 | 33.103 | 145 | 88 | 4 | 13 | 156 | 638 | 774 | 7.30e-13 | 65.5 |
MsG0380017372.01.T01 | AT2G27430 | 31.293 | 147 | 97 | 1 | 10 | 156 | 172 | 314 | 1.73e-11 | 61.2 |
Find 24 sgRNAs with CRISPR-Local
Find 30 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAAGGATGCAATCACAATTT+TGG | 0.171187 | 3:-95456119 | MsG0380017372.01.T01:CDS |
GATTCTAACAAACCAATAAT+TGG | 0.187713 | 3:-95456406 | MsG0380017372.01.T01:CDS |
GACGAATATTTCATTTGTTT+TGG | 0.222706 | 3:-95456263 | MsG0380017372.01.T01:CDS |
GCACCAGAGGATCCAATTAT+TGG | 0.223709 | 3:+95456394 | None:intergenic |
GAAGCCTTCTCTTGACATTC+AGG | 0.257804 | 3:+95456070 | None:intergenic |
CCTTTCAATTCTGAGCAATT+TGG | 0.260209 | 3:-95456179 | MsG0380017372.01.T01:CDS |
AAAAGCTATTAGTGCTGTTA+AGG | 0.376170 | 3:-95456137 | MsG0380017372.01.T01:CDS |
TTTCCTTGGATTAAGTGCTT+TGG | 0.382622 | 3:-95456428 | MsG0380017372.01.T01:CDS |
AAGTTAAACAAGATGCTCTT+CGG | 0.386930 | 3:-95456312 | MsG0380017372.01.T01:CDS |
GCAATTGTTGCAAATTTCCT+TGG | 0.402106 | 3:-95456442 | MsG0380017372.01.T01:CDS |
AGTTAAACAAGATGCTCTTC+GGG | 0.453105 | 3:-95456311 | MsG0380017372.01.T01:CDS |
ACCTTGTGTTGTTGATTCAT+CGG | 0.459932 | 3:-95456473 | MsG0380017372.01.T01:CDS |
AAACCAATAATTGGATCCTC+TGG | 0.464190 | 3:-95456397 | MsG0380017372.01.T01:CDS |
TTTCAGAGTTCTAACTAGGA+AGG | 0.499120 | 3:+95456366 | None:intergenic |
TTCAGAGTTCTAACTAGGAA+GGG | 0.526621 | 3:+95456367 | None:intergenic |
CCAAATTGCTCAGAATTGAA+AGG | 0.568365 | 3:+95456179 | None:intergenic |
TGTTGATTCATCGGTTTCTG+AGG | 0.570602 | 3:-95456464 | MsG0380017372.01.T01:CDS |
AATCCAAAGCACTTAATCCA+AGG | 0.592090 | 3:+95456425 | None:intergenic |
TTCACCTGAATGTCAAGAGA+AGG | 0.606603 | 3:-95456074 | MsG0380017372.01.T01:CDS |
CAATTTGGTGTCGAGTCCCG+AGG | 0.611390 | 3:-95456164 | MsG0380017372.01.T01:CDS |
TAGGAAGGGTATTGCACCAG+AGG | 0.641343 | 3:+95456381 | None:intergenic |
GATAAACTCGATAGAAGACA+TGG | 0.646492 | 3:-95456218 | MsG0380017372.01.T01:CDS |
ACCGATGAATCAACAACACA+AGG | 0.656484 | 3:+95456472 | None:intergenic |
AATTTGGTGTCGAGTCCCGA+GGG | 0.656713 | 3:-95456163 | MsG0380017372.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTCATACATTTTGATGATTA+TGG | - | Chr3:95456488-95456507 | MsG0380017372.01.T01:CDS | 20.0% |
! | GATTCTAACAAACCAATAAT+TGG | - | Chr3:95456132-95456151 | MsG0380017372.01.T01:CDS | 25.0% |
!! | GACGAATATTTCATTTGTTT+TGG | - | Chr3:95456275-95456294 | MsG0380017372.01.T01:CDS | 25.0% |
!!! | AATTTTTCAGAGTTCTAACT+AGG | + | Chr3:95456179-95456198 | None:intergenic | 25.0% |
!!! | ATTTGTTTTGGAAACTGATA+TGG | - | Chr3:95456287-95456306 | MsG0380017372.01.T01:CDS | 25.0% |
!!! | TTTTGGTTGATGTATTGAAT+TGG | - | Chr3:95456436-95456455 | MsG0380017372.01.T01:CDS | 25.0% |
AAGTTAAACAAGATGCTCTT+CGG | - | Chr3:95456226-95456245 | MsG0380017372.01.T01:CDS | 30.0% | |
! | AAAAGCTATTAGTGCTGTTA+AGG | - | Chr3:95456401-95456420 | MsG0380017372.01.T01:CDS | 30.0% |
! | TAAGGATGCAATCACAATTT+TGG | - | Chr3:95456419-95456438 | MsG0380017372.01.T01:CDS | 30.0% |
AAACCAATAATTGGATCCTC+TGG | - | Chr3:95456141-95456160 | MsG0380017372.01.T01:CDS | 35.0% | |
AGTTAAACAAGATGCTCTTC+GGG | - | Chr3:95456227-95456246 | MsG0380017372.01.T01:CDS | 35.0% | |
CCAAATTGCTCAGAATTGAA+AGG | + | Chr3:95456362-95456381 | None:intergenic | 35.0% | |
CCTTTCAATTCTGAGCAATT+TGG | - | Chr3:95456359-95456378 | MsG0380017372.01.T01:CDS | 35.0% | |
GATAAACTCGATAGAAGACA+TGG | - | Chr3:95456320-95456339 | MsG0380017372.01.T01:CDS | 35.0% | |
GCAATTGTTGCAAATTTCCT+TGG | - | Chr3:95456096-95456115 | MsG0380017372.01.T01:CDS | 35.0% | |
TTTCCTTGGATTAAGTGCTT+TGG | - | Chr3:95456110-95456129 | MsG0380017372.01.T01:CDS | 35.0% | |
! | AATCCAAAGCACTTAATCCA+AGG | + | Chr3:95456116-95456135 | None:intergenic | 35.0% |
! | ACTAATAGCTTTTCTACCCT+CGG | + | Chr3:95456394-95456413 | None:intergenic | 35.0% |
! | TTCAGAGTTCTAACTAGGAA+GGG | + | Chr3:95456174-95456193 | None:intergenic | 35.0% |
! | TTTCAGAGTTCTAACTAGGA+AGG | + | Chr3:95456175-95456194 | None:intergenic | 35.0% |
!! | ACCTTGTGTTGTTGATTCAT+CGG | - | Chr3:95456065-95456084 | MsG0380017372.01.T01:CDS | 35.0% |
ACCGATGAATCAACAACACA+AGG | + | Chr3:95456069-95456088 | None:intergenic | 40.0% | |
TTCACCTGAATGTCAAGAGA+AGG | - | Chr3:95456464-95456483 | MsG0380017372.01.T01:CDS | 40.0% | |
! | CTAATAGCTTTTCTACCCTC+GGG | + | Chr3:95456393-95456412 | None:intergenic | 40.0% |
!! | TGTTGATTCATCGGTTTCTG+AGG | - | Chr3:95456074-95456093 | MsG0380017372.01.T01:CDS | 40.0% |
GAAGCCTTCTCTTGACATTC+AGG | + | Chr3:95456471-95456490 | None:intergenic | 45.0% | |
GCACCAGAGGATCCAATTAT+TGG | + | Chr3:95456147-95456166 | None:intergenic | 45.0% | |
!! | AATTTGGTGTCGAGTCCCGA+GGG | - | Chr3:95456375-95456394 | MsG0380017372.01.T01:CDS | 50.0% |
!! | TAGGAAGGGTATTGCACCAG+AGG | + | Chr3:95456160-95456179 | None:intergenic | 50.0% |
!! | CAATTTGGTGTCGAGTCCCG+AGG | - | Chr3:95456374-95456393 | MsG0380017372.01.T01:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 95456045 | 95456515 | 95456045 | ID=MsG0380017372.01;Name=MsG0380017372.01 |
Chr3 | mRNA | 95456045 | 95456515 | 95456045 | ID=MsG0380017372.01.T01;Parent=MsG0380017372.01;Name=MsG0380017372.01.T01;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|1|1|0|156 |
Chr3 | exon | 95456045 | 95456515 | 95456045 | ID=MsG0380017372.01.T01:exon:2152;Parent=MsG0380017372.01.T01 |
Chr3 | CDS | 95456045 | 95456515 | 95456045 | ID=MsG0380017372.01.T01:cds;Parent=MsG0380017372.01.T01 |
Gene Sequence |
Protein sequence |