AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015677.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015677.01.T02 MTR_3g074900 97.214 323 2 1 1 323 1 316 0.0 642
MsG0380015677.01.T02 MTR_5g064480 56.481 324 132 3 1 323 1 316 4.61e-118 343
MsG0380015677.01.T02 MTR_5g098180 51.325 302 96 7 1 302 1 251 1.40e-91 273
MsG0380015677.01.T02 MTR_1g045100 33.891 239 139 7 9 238 22 250 8.59e-28 109
MsG0380015677.01.T02 MTR_1g044795 31.325 249 153 7 9 249 21 259 1.94e-23 98.2
MsG0380015677.01.T02 MTR_8g091730 30.000 230 155 4 9 236 22 247 1.52e-21 93.2
MsG0380015677.01.T02 MTR_3g067615 28.625 269 163 8 9 269 4 251 1.74e-21 92.8
MsG0380015677.01.T02 MTR_8g040130 26.872 227 139 4 9 230 9 213 2.23e-20 88.2
MsG0380015677.01.T02 MTR_2g018940 28.936 235 155 6 3 235 19 243 3.92e-20 89.7
MsG0380015677.01.T02 MTR_3g065610 28.175 252 163 8 5 250 18 257 4.86e-20 89.0
MsG0380015677.01.T02 MTR_2g018950 30.612 245 146 8 3 235 18 250 2.22e-19 87.4
MsG0380015677.01.T02 MTR_3g080360 26.493 268 175 9 2 263 33 284 2.34e-19 86.7
MsG0380015677.01.T02 MTR_3g067625 31.304 230 141 8 9 235 20 235 6.54e-19 87.4
MsG0380015677.01.T02 MTR_3g067990 28.151 238 132 7 9 238 22 228 8.45e-19 84.7
MsG0380015677.01.T02 MTR_3g067630 30.435 230 143 8 9 235 20 235 1.36e-18 85.5
MsG0380015677.01.T02 MTR_3g065590 27.839 273 177 9 5 269 18 278 1.08e-17 82.4
MsG0380015677.01.T02 MTR_2g018910 26.545 275 178 9 8 269 26 289 1.50e-17 82.4
MsG0380015677.01.T02 MTR_3g065620 27.473 273 180 7 9 280 17 272 3.38e-17 80.5
MsG0380015677.01.T02 MTR_5g027890 26.471 238 160 6 2 237 13 237 5.95e-17 79.7
MsG0380015677.01.T02 MTR_3g067645 28.511 235 153 6 2 235 14 234 2.43e-16 79.0
MsG0380015677.01.T02 MTR_4g130620 26.792 265 162 7 10 249 9 266 8.55e-15 73.9
MsG0380015677.01.T02 MTR_3g080280 27.917 240 147 9 9 241 24 244 3.79e-14 72.0
MsG0380015677.01.T02 MTR_6g015900 25.726 241 160 7 2 235 9 237 9.77e-14 70.9
MsG0380015677.01.T02 MTR_3g065840 27.528 178 119 3 56 232 3 171 1.77e-13 68.9
MsG0380015677.01.T02 MTR_6g015890 24.648 284 185 9 2 278 12 273 5.19e-13 68.9
MsG0380015677.01.T02 MTR_7g047530 34.746 118 70 3 118 235 74 184 6.97e-13 67.4
MsG0380015677.01.T02 MTR_7g451730 34.746 118 70 3 118 235 83 193 9.72e-13 67.0
MsG0380015677.01.T02 MTR_3g065890 26.199 271 146 7 9 272 15 238 1.66e-12 66.6
MsG0380015677.01.T02 MTR_3g080330 24.719 267 176 8 9 269 12 259 1.99e-12 66.6
MsG0380015677.01.T02 MTR_3g080310 26.423 246 165 6 9 250 12 245 2.64e-12 66.2
MsG0380015677.01.T02 MTR_3g065820 26.087 253 171 6 9 255 20 262 1.15e-11 65.1
MsG0380015677.01.T02 MTR_3g065850 29.596 223 144 6 9 228 18 230 4.22e-11 62.8
MsG0380015677.01.T01 MTR_3g074900 97.214 323 2 1 1 323 1 316 0.0 642
MsG0380015677.01.T01 MTR_5g064480 56.481 324 132 3 1 323 1 316 4.61e-118 343
MsG0380015677.01.T01 MTR_5g098180 51.325 302 96 7 1 302 1 251 1.40e-91 273
MsG0380015677.01.T01 MTR_1g045100 33.891 239 139 7 9 238 22 250 8.59e-28 109
MsG0380015677.01.T01 MTR_1g044795 31.325 249 153 7 9 249 21 259 1.94e-23 98.2
MsG0380015677.01.T01 MTR_8g091730 30.000 230 155 4 9 236 22 247 1.52e-21 93.2
MsG0380015677.01.T01 MTR_3g067615 28.625 269 163 8 9 269 4 251 1.74e-21 92.8
MsG0380015677.01.T01 MTR_8g040130 26.872 227 139 4 9 230 9 213 2.23e-20 88.2
MsG0380015677.01.T01 MTR_2g018940 28.936 235 155 6 3 235 19 243 3.92e-20 89.7
MsG0380015677.01.T01 MTR_3g065610 28.175 252 163 8 5 250 18 257 4.86e-20 89.0
MsG0380015677.01.T01 MTR_2g018950 30.612 245 146 8 3 235 18 250 2.22e-19 87.4
MsG0380015677.01.T01 MTR_3g080360 26.493 268 175 9 2 263 33 284 2.34e-19 86.7
MsG0380015677.01.T01 MTR_3g067625 31.304 230 141 8 9 235 20 235 6.54e-19 87.4
MsG0380015677.01.T01 MTR_3g067990 28.151 238 132 7 9 238 22 228 8.45e-19 84.7
MsG0380015677.01.T01 MTR_3g067630 30.435 230 143 8 9 235 20 235 1.36e-18 85.5
MsG0380015677.01.T01 MTR_3g065590 27.839 273 177 9 5 269 18 278 1.08e-17 82.4
MsG0380015677.01.T01 MTR_2g018910 26.545 275 178 9 8 269 26 289 1.50e-17 82.4
MsG0380015677.01.T01 MTR_3g065620 27.473 273 180 7 9 280 17 272 3.38e-17 80.5
MsG0380015677.01.T01 MTR_5g027890 26.471 238 160 6 2 237 13 237 5.95e-17 79.7
MsG0380015677.01.T01 MTR_3g067645 28.511 235 153 6 2 235 14 234 2.43e-16 79.0
MsG0380015677.01.T01 MTR_4g130620 26.792 265 162 7 10 249 9 266 8.55e-15 73.9
MsG0380015677.01.T01 MTR_3g080280 27.917 240 147 9 9 241 24 244 3.79e-14 72.0
MsG0380015677.01.T01 MTR_6g015900 25.726 241 160 7 2 235 9 237 9.77e-14 70.9
MsG0380015677.01.T01 MTR_3g065840 27.528 178 119 3 56 232 3 171 1.77e-13 68.9
MsG0380015677.01.T01 MTR_6g015890 24.648 284 185 9 2 278 12 273 5.19e-13 68.9
MsG0380015677.01.T01 MTR_7g047530 34.746 118 70 3 118 235 74 184 6.97e-13 67.4
MsG0380015677.01.T01 MTR_7g451730 34.746 118 70 3 118 235 83 193 9.72e-13 67.0
MsG0380015677.01.T01 MTR_3g065890 26.199 271 146 7 9 272 15 238 1.66e-12 66.6
MsG0380015677.01.T01 MTR_3g080330 24.719 267 176 8 9 269 12 259 1.99e-12 66.6
MsG0380015677.01.T01 MTR_3g080310 26.423 246 165 6 9 250 12 245 2.64e-12 66.2
MsG0380015677.01.T01 MTR_3g065820 26.087 253 171 6 9 255 20 262 1.15e-11 65.1
MsG0380015677.01.T01 MTR_3g065850 29.596 223 144 6 9 228 18 230 4.22e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015677.01.T02 AT4G08980 54.683 331 128 8 1 323 1 317 2.04e-114 334
MsG0380015677.01.T02 AT4G08980 54.683 331 128 8 1 323 1 317 2.04e-114 334
MsG0380015677.01.T02 AT4G08980 54.683 331 128 8 1 323 1 317 2.04e-114 334
MsG0380015677.01.T02 AT4G08980 54.683 331 128 8 1 323 1 317 2.04e-114 334
MsG0380015677.01.T02 AT4G08980 54.683 331 128 8 1 323 1 317 2.04e-114 334
MsG0380015677.01.T02 AT4G05460 31.081 296 180 9 3 296 12 285 9.04e-30 115
MsG0380015677.01.T02 AT5G57900 30.488 246 136 6 10 230 8 243 9.21e-22 94.0
MsG0380015677.01.T02 AT4G05497 30.380 237 147 4 5 235 16 240 9.94e-20 87.0
MsG0380015677.01.T02 AT4G05470 30.588 255 138 11 6 238 42 279 1.24e-19 87.8
MsG0380015677.01.T02 AT4G30640 29.268 246 141 7 10 230 20 257 2.42e-16 78.6
MsG0380015677.01.T02 AT4G05490 28.326 233 146 5 9 235 26 243 8.14e-16 77.0
MsG0380015677.01.T02 AT4G05475 25.820 244 153 9 9 238 39 268 1.10e-13 70.9
MsG0380015677.01.T02 AT4G03630 29.412 170 110 4 67 235 24 184 7.02e-13 67.4
MsG0380015677.01.T02 AT5G52480 33.523 176 104 5 76 251 23 185 2.61e-12 66.2
MsG0380015677.01.T01 AT4G08980 54.683 331 128 8 1 323 1 317 2.04e-114 334
MsG0380015677.01.T01 AT4G08980 54.683 331 128 8 1 323 1 317 2.04e-114 334
MsG0380015677.01.T01 AT4G08980 54.683 331 128 8 1 323 1 317 2.04e-114 334
MsG0380015677.01.T01 AT4G08980 54.683 331 128 8 1 323 1 317 2.04e-114 334
MsG0380015677.01.T01 AT4G08980 54.683 331 128 8 1 323 1 317 2.04e-114 334
MsG0380015677.01.T01 AT4G05460 31.081 296 180 9 3 296 12 285 9.04e-30 115
MsG0380015677.01.T01 AT5G57900 30.488 246 136 6 10 230 8 243 9.21e-22 94.0
MsG0380015677.01.T01 AT4G05497 30.380 237 147 4 5 235 16 240 9.94e-20 87.0
MsG0380015677.01.T01 AT4G05470 30.588 255 138 11 6 238 42 279 1.24e-19 87.8
MsG0380015677.01.T01 AT4G30640 29.268 246 141 7 10 230 20 257 2.42e-16 78.6
MsG0380015677.01.T01 AT4G05490 28.326 233 146 5 9 235 26 243 8.14e-16 77.0
MsG0380015677.01.T01 AT4G05475 25.820 244 153 9 9 238 39 268 1.10e-13 70.9
MsG0380015677.01.T01 AT4G03630 29.412 170 110 4 67 235 24 184 7.02e-13 67.4
MsG0380015677.01.T01 AT5G52480 33.523 176 104 5 76 251 23 185 2.61e-12 66.2

Find 35 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGAAAGCTGTGTGTTTC+TGG 0.141960 3:+73542287 MsG0380015677.01.T01:CDS
TTAATTATGTTCATTTAATA+TGG 0.210713 3:+73541928 MsG0380015677.01.T01:intron
CTTTACTCTTGTTCTTGTTT+TGG 0.255549 3:+73541471 MsG0380015677.01.T02:five_prime_UTR
TCATGGTGTAAAGCAGTTTC+TGG 0.263962 3:+73542158 MsG0380015677.01.T01:CDS
TTGTTCGAGGAGGTGAATTA+TGG 0.266030 3:-73541652 None:intergenic
TTCAGCAATGAAAGTGAAAA+TGG 0.303416 3:-73542324 None:intergenic
GAATTGATTCCTGATGCATT+AGG 0.312469 3:+73542074 MsG0380015677.01.T01:CDS
GAAGAAGGTGAAGATGAAAA+AGG 0.330310 3:-73541580 None:intergenic
CTTACTAAGTTAGAACAAAA+AGG 0.341447 3:-73541701 None:intergenic
TCTATCTCTTGCCAACAATT+AGG 0.369302 3:-73542182 None:intergenic
AATTGATTCCTGATGCATTA+GGG 0.374472 3:+73542075 MsG0380015677.01.T01:CDS
TTGTTATAGATTGGATTTGA+TGG 0.392983 3:+73542022 MsG0380015677.01.T01:intron
CACCATGATTTACATACCCT+TGG 0.409233 3:-73542143 None:intergenic
TCTTTCCCCGTTGCATGTGC+CGG 0.418425 3:+73541611 MsG0380015677.01.T01:five_prime_UTR
TTGGATTTGATGGGAGAAGC+AGG 0.430121 3:+73542032 MsG0380015677.01.T01:exon
TGTATTGAAGCAAAAGTGTT+AGG 0.433058 3:+73541502 MsG0380015677.01.T02:five_prime_UTR
AGCAGGTGAATTACGAAGTT+GGG 0.441077 3:+73542049 MsG0380015677.01.T01:CDS
AGCATCTGATCAAGTTTGTC+AGG 0.441867 3:-73542233 None:intergenic
CAGTTTCTGGACCTAATTGT+TGG 0.459386 3:+73542171 MsG0380015677.01.T01:CDS
AAGATCACCCCTAATGCATC+AGG 0.469258 3:-73542083 None:intergenic
AGAGAGTGACAGTGATTCCA+AGG 0.502069 3:+73542126 MsG0380015677.01.T01:CDS
TGTTATAGATTGGATTTGAT+GGG 0.503271 3:+73542023 MsG0380015677.01.T01:intron
TACAAGAGAGTGTTTGTTCG+AGG 0.503287 3:-73541665 None:intergenic
AAGCAGGTGAATTACGAAGT+TGG 0.504117 3:+73542048 MsG0380015677.01.T01:CDS
TCTGATCAAGTTTGTCAGGT+TGG 0.524395 3:-73542229 None:intergenic
GGAAAGAAGAGATAAGAAGA+AGG 0.540882 3:-73541595 None:intergenic
TTCCAAGGGTATGTAAATCA+TGG 0.555605 3:+73542141 MsG0380015677.01.T01:CDS
ATGCTTATCAGTAAAAGTTG+TGG 0.582915 3:+73542260 MsG0380015677.01.T01:CDS
AAGAGATAGATATTGAAGAA+TGG 0.583086 3:+73542195 MsG0380015677.01.T01:CDS
ATTGAAGCAAAAGTGTTAGG+TGG 0.593296 3:+73541505 MsG0380015677.01.T01:five_prime_UTR
AACAAGAACAAGAGTAAAGA+CGG 0.595982 3:-73541467 None:intergenic
AAGAGAGTGTTTGTTCGAGG+AGG 0.614233 3:-73541662 None:intergenic
GAGAGTGACAGTGATTCCAA+GGG 0.645348 3:+73542127 MsG0380015677.01.T01:CDS
ATTGATTCCTGATGCATTAG+GGG 0.669573 3:+73542076 MsG0380015677.01.T01:CDS
AAAATCCGGCACATGCAACG+GGG 0.735285 3:-73541616 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTATGTTCATTTAATA+TGG + Chr3:73541928-73541947 MsG0380015677.01.T01:intron 10.0%
!! ACAAAAAAAAAAAATCTTTC+TGG + Chr3:73541768-73541787 MsG0380015677.01.T01:intron 15.0%
!! AGATGAAAAAACATAAAATT+TGG + Chr3:73542560-73542579 MsG0380015677.01.T01:intron 15.0%
!! CAAAAAAAAAAAATCTTTCT+GGG + Chr3:73541769-73541788 MsG0380015677.01.T01:intron 15.0%
!!! TTTTACTTTTATATAGTTTG+TGG - Chr3:73541988-73542007 None:intergenic 15.0%
!! AAAGTTGAGAGAATAAAAAA+TGG - Chr3:73541876-73541895 None:intergenic 20.0%
!! TTGTTAAAATGTTTAACACA+AGG + Chr3:73542440-73542459 MsG0380015677.01.T01:intron 20.0%
!!! ATTTCATTTTTCTTTCTTAC+TGG + Chr3:73542629-73542648 MsG0380015677.01.T01:intron 20.0%
!!! ATTTTCTATGATAACTTTCT+TGG + Chr3:73542779-73542798 MsG0380015677.01.T01:CDS 20.0%
!!! GATTTTTCTTTGTTATAGAT+TGG + Chr3:73542013-73542032 MsG0380015677.01.T01:intron 20.0%
!!! TTTCCAAAACTTAAAGTTTT+GGG + Chr3:73543107-73543126 MsG0380015677.01.T01:CDS 20.0%
!!! TTTTCCAAAACTTAAAGTTT+TGG + Chr3:73543106-73543125 MsG0380015677.01.T01:CDS 20.0%
! AAGAGATAGATATTGAAGAA+TGG + Chr3:73542195-73542214 MsG0380015677.01.T01:CDS 25.0%
! CTTACTAAGTTAGAACAAAA+AGG - Chr3:73541704-73541723 None:intergenic 25.0%
! CTTGAATTTGGATTATATGA+AGG + Chr3:73543284-73543303 MsG0380015677.01.T01:CDS 25.0%
! TATCAGAAAAATCACACATA+AGG - Chr3:73541844-73541863 None:intergenic 25.0%
! TGTTATAGATTGGATTTGAT+GGG + Chr3:73542023-73542042 MsG0380015677.01.T01:intron 25.0%
! TTGTTATAGATTGGATTTGA+TGG + Chr3:73542022-73542041 MsG0380015677.01.T01:intron 25.0%
!! TCTAAAATGAAGTAAGACTA+TGG - Chr3:73542368-73542387 None:intergenic 25.0%
!! TTCCAAAACTTAAAGTTTTG+GGG + Chr3:73543108-73543127 MsG0380015677.01.T01:CDS 25.0%
!!! ATAGTCTTACTTCATTTTAG+AGG + Chr3:73542367-73542386 MsG0380015677.01.T01:intron 25.0%
AACAAGAACAAGAGTAAAGA+CGG - Chr3:73541470-73541489 None:intergenic 30.0%
AGATCCAAAAATTCAAGCTT+TGG - Chr3:73543035-73543054 None:intergenic 30.0%
ATAGATGATGAGCTTGAATT+TGG + Chr3:73543272-73543291 MsG0380015677.01.T01:CDS 30.0%
ATCTTGAAATGGCTTATCAT+AGG + Chr3:73542970-73542989 MsG0380015677.01.T01:CDS 30.0%
ATGCTTATCAGTAAAAGTTG+TGG + Chr3:73542260-73542279 MsG0380015677.01.T01:CDS 30.0%
GTGAGCTATTGTATCAAAAT+TGG + Chr3:73542804-73542823 MsG0380015677.01.T01:CDS 30.0%
TTCAGCAATGAAAGTGAAAA+TGG - Chr3:73542327-73542346 None:intergenic 30.0%
! AATTGATTCCTGATGCATTA+GGG + Chr3:73542075-73542094 MsG0380015677.01.T01:CDS 30.0%
! ACTTGATTTTTGAATGCTGA+TGG + Chr3:73542476-73542495 MsG0380015677.01.T01:intron 30.0%
!! CTTTACTCTTGTTCTTGTTT+TGG + Chr3:73541471-73541490 MsG0380015677.01.T02:five_prime_UTR 30.0%
!! TATGTTGATGATGATAGTGA+TGG + Chr3:73543236-73543255 MsG0380015677.01.T01:CDS 30.0%
!! TGTATTGAAGCAAAAGTGTT+AGG + Chr3:73541502-73541521 MsG0380015677.01.T02:five_prime_UTR 30.0%
ATAGTGATGGTTATGAAGGA+AGG + Chr3:73543249-73543268 MsG0380015677.01.T01:CDS 35.0%
ATTTCAAGATGCTTGAGCTT+CGG - Chr3:73542960-73542979 None:intergenic 35.0%
GAAACAAGAACCGAAAAATC+CGG - Chr3:73541633-73541652 None:intergenic 35.0%
GAAGAAGGTGAAGATGAAAA+AGG - Chr3:73541583-73541602 None:intergenic 35.0%
GGAAAGAAGAGATAAGAAGA+AGG - Chr3:73541598-73541617 None:intergenic 35.0%
TAGAAGATGCAGGAATGTAT+TGG + Chr3:73543309-73543328 MsG0380015677.01.T01:CDS 35.0%
TATCAGATGAGTATCTAGCT+TGG + Chr3:73543189-73543208 MsG0380015677.01.T01:CDS 35.0%
TCATAAGCACCAAGAACAAA+AGG - Chr3:73543134-73543153 None:intergenic 35.0%
TCTATCTCTTGCCAACAATT+AGG - Chr3:73542185-73542204 None:intergenic 35.0%
TTATCATAGGATCAGCACTT+CGG + Chr3:73542983-73543002 MsG0380015677.01.T01:CDS 35.0%
! ATCAGATGAGTATCTAGCTT+GGG + Chr3:73543190-73543209 MsG0380015677.01.T01:CDS 35.0%
! ATTGATTCCTGATGCATTAG+GGG + Chr3:73542076-73542095 MsG0380015677.01.T01:CDS 35.0%
! CTGTCCAAAGCTTGAATTTT+TGG + Chr3:73543028-73543047 MsG0380015677.01.T01:CDS 35.0%
! GAATTGATTCCTGATGCATT+AGG + Chr3:73542074-73542093 MsG0380015677.01.T01:CDS 35.0%
! GATGATAGTGATGGTTATGA+AGG + Chr3:73543245-73543264 MsG0380015677.01.T01:CDS 35.0%
! TATGAAGGTATAGAAGATGC+AGG + Chr3:73543299-73543318 MsG0380015677.01.T01:CDS 35.0%
! TTATACTCTTTTGCAAGTGC+TGG + Chr3:73542687-73542706 MsG0380015677.01.T01:CDS 35.0%
! TTCCAAGGGTATGTAAATCA+TGG + Chr3:73542141-73542160 MsG0380015677.01.T01:CDS 35.0%
! TTTTGTAGAGAGAGAGAAAG+AGG - Chr3:73541749-73541768 None:intergenic 35.0%
!! AGCTTGAATTTTTGGATCTG+AGG + Chr3:73543036-73543055 MsG0380015677.01.T01:CDS 35.0%
!! ATTGAAGCAAAAGTGTTAGG+TGG + Chr3:73541505-73541524 MsG0380015677.01.T01:five_prime_UTR 35.0%
!! CTTGAATTTTTGGATCTGAG+GGG + Chr3:73543038-73543057 MsG0380015677.01.T01:CDS 35.0%
!! GCTTGAATTTTTGGATCTGA+GGG + Chr3:73543037-73543056 MsG0380015677.01.T01:CDS 35.0%
!!! TACTCTTGTTCTTGTTTTGG+TGG + Chr3:73541474-73541493 MsG0380015677.01.T02:five_prime_UTR 35.0%
!!! TTGCTGATTTGTTTTCGTCT+AGG - Chr3:73543079-73543098 None:intergenic 35.0%
AAATCGCTCATATTGCTCCT+TGG - Chr3:73542735-73542754 None:intergenic 40.0%
AACTGCTAGAAGAGTTGTGT+AGG + Chr3:73542862-73542881 MsG0380015677.01.T01:CDS 40.0%
AAGCAGGTGAATTACGAAGT+TGG + Chr3:73542048-73542067 MsG0380015677.01.T01:CDS 40.0%
AAGGAGCAATATGAGCGATT+TGG + Chr3:73542734-73542753 MsG0380015677.01.T01:CDS 40.0%
AGCAGGTGAATTACGAAGTT+GGG + Chr3:73542049-73542068 MsG0380015677.01.T01:CDS 40.0%
AGCATCTGATCAAGTTTGTC+AGG - Chr3:73542236-73542255 None:intergenic 40.0%
CACCATGATTTACATACCCT+TGG - Chr3:73542146-73542165 None:intergenic 40.0%
GAAGCTCAAGCATCTTGAAA+TGG + Chr3:73542959-73542978 MsG0380015677.01.T01:CDS 40.0%
GTGTAGGAATATGCATCCAT+TGG + Chr3:73542878-73542897 MsG0380015677.01.T01:CDS 40.0%
TATCATAGGATCAGCACTTC+GGG + Chr3:73542984-73543003 MsG0380015677.01.T01:CDS 40.0%
TATGCCTCGTCATCTTGTAA+TGG - Chr3:73542918-73542937 None:intergenic 40.0%
TCATGGTGTAAAGCAGTTTC+TGG + Chr3:73542158-73542177 MsG0380015677.01.T01:CDS 40.0%
TCTGATCAAGTTTGTCAGGT+TGG - Chr3:73542232-73542251 None:intergenic 40.0%
TGAATGCTGATGGTTCATGA+AGG + Chr3:73542486-73542505 MsG0380015677.01.T01:intron 40.0%
TGCTTATGAGAGTGATGGTT+GGG + Chr3:73543145-73543164 MsG0380015677.01.T01:CDS 40.0%
TTGTTCGAGGAGGTGAATTA+TGG - Chr3:73541655-73541674 None:intergenic 40.0%
! CAGTTTCTGGACCTAATTGT+TGG + Chr3:73542171-73542190 MsG0380015677.01.T01:CDS 40.0%
!! CAATATGAGCGATTTGGTTG+TGG + Chr3:73542740-73542759 MsG0380015677.01.T01:CDS 40.0%
!! GGCCCCAAAACTTTAAGTTT+TGG - Chr3:73543113-73543132 None:intergenic 40.0%
!! TACAAGAGAGTGTTTGTTCG+AGG - Chr3:73541668-73541687 None:intergenic 40.0%
!!! CTTGTTCTTGTTTTGGTGGT+TGG + Chr3:73541478-73541497 MsG0380015677.01.T02:five_prime_UTR 40.0%
AAAAATCCGGCACATGCAAC+GGG - Chr3:73541620-73541639 None:intergenic 45.0%
AAGATCACCCCTAATGCATC+AGG - Chr3:73542086-73542105 None:intergenic 45.0%
AGAGAGTGACAGTGATTCCA+AGG + Chr3:73542126-73542145 MsG0380015677.01.T01:CDS 45.0%
ATCATAGGATCAGCACTTCG+GGG + Chr3:73542985-73543004 MsG0380015677.01.T01:CDS 45.0%
CAAGCCATTACAAGATGACG+AGG + Chr3:73542911-73542930 MsG0380015677.01.T01:CDS 45.0%
CTCAGAAAGCTGTGTGTTTC+TGG + Chr3:73542287-73542306 MsG0380015677.01.T01:CDS 45.0%
GAAAAATCCGGCACATGCAA+CGG - Chr3:73541621-73541640 None:intergenic 45.0%
GAGAGTGACAGTGATTCCAA+GGG + Chr3:73542127-73542146 MsG0380015677.01.T01:CDS 45.0%
GCGTGTGCAATTGAGATGAT+AGG + Chr3:73542828-73542847 MsG0380015677.01.T01:CDS 45.0%
GTGCTTATGAGAGTGATGGT+TGG + Chr3:73543144-73543163 MsG0380015677.01.T01:CDS 45.0%
TGGTAGTCTCAAACTCCGAA+GGG - Chr3:73542715-73542734 None:intergenic 45.0%
TTGGATTTGATGGGAGAAGC+AGG + Chr3:73542032-73542051 MsG0380015677.01.T01:exon 45.0%
TTGGTTGTGGAACAGATTGC+TGG + Chr3:73542753-73542772 MsG0380015677.01.T01:CDS 45.0%
TTTGGATCTGAGGGGTTGTT+GGG + Chr3:73543046-73543065 MsG0380015677.01.T01:CDS 45.0%
! CTAGCTTGGGATTTTGTAGC+TGG + Chr3:73543203-73543222 MsG0380015677.01.T01:CDS 45.0%
! GTCATCTTGTAATGGCTTGC+CGG - Chr3:73542910-73542929 None:intergenic 45.0%
! GTTGCATGTGCCGGATTTTT+CGG + Chr3:73541620-73541639 MsG0380015677.01.T01:five_prime_UTR 45.0%
! TTCGGAGTTTGAGACTACCA+AGG + Chr3:73542715-73542734 MsG0380015677.01.T01:CDS 45.0%
! TTGGTAGTCTCAAACTCCGA+AGG - Chr3:73542716-73542735 None:intergenic 45.0%
! TTTTGGATCTGAGGGGTTGT+TGG + Chr3:73543045-73543064 MsG0380015677.01.T01:CDS 45.0%
!! AAGAGAGTGTTTGTTCGAGG+AGG - Chr3:73541665-73541684 None:intergenic 45.0%
!! CTTGGTGCTTATGAGAGTGA+TGG + Chr3:73543140-73543159 MsG0380015677.01.T01:CDS 45.0%
!!! GTTTTGGGGCCTTTTGTTCT+TGG + Chr3:73543122-73543141 MsG0380015677.01.T01:CDS 45.0%
AAAATCCGGCACATGCAACG+GGG - Chr3:73541619-73541638 None:intergenic 50.0%
ATGCATCCATTGGATACCGC+CGG + Chr3:73542888-73542907 MsG0380015677.01.T01:CDS 50.0%
ATGCTTGAGCTTCGGCATTG+TGG - Chr3:73542952-73542971 None:intergenic 50.0%
TCATAGGATCAGCACTTCGG+GGG + Chr3:73542986-73543005 MsG0380015677.01.T01:CDS 50.0%
TTGGATCTGAGGGGTTGTTG+GGG + Chr3:73543047-73543066 MsG0380015677.01.T01:CDS 50.0%
! ATCTTGTAATGGCTTGCCGG+CGG - Chr3:73542907-73542926 None:intergenic 50.0%
!! TTGCAAGTGCTGGTTCCCTT+CGG + Chr3:73542697-73542716 MsG0380015677.01.T01:CDS 50.0%
TCTTTCCCCGTTGCATGTGC+CGG + Chr3:73541611-73541630 MsG0380015677.01.T01:five_prime_UTR 55.0%
GGCTTGCCGGCGGTATCCAA+TGG - Chr3:73542897-73542916 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 73541435 73543346 73541435 ID=MsG0380015677.01;Name=MsG0380015677.01
Chr3 mRNA 73541504 73543346 73541504 ID=MsG0380015677.01.T01;Parent=MsG0380015677.01;Name=MsG0380015677.01.T01;_AED=0.49;_eAED=0.49;_QI=191|0.5|0.66|1|0.5|0.33|3|0|323
Chr3 exon 73541504 73541684 73541504 ID=MsG0380015677.01.T01:exon:24276;Parent=MsG0380015677.01.T01
Chr3 exon 73542031 73542348 73542031 ID=MsG0380015677.01.T01:exon:24277;Parent=MsG0380015677.01.T01
Chr3 five_prime_UTR 73541504 73541684 73541504 ID=MsG0380015677.01.T01:five_prime_utr;Parent=MsG0380015677.01.T01
Chr3 five_prime_UTR 73542031 73542040 73542031 ID=MsG0380015677.01.T01:five_prime_utr;Parent=MsG0380015677.01.T01
Chr3 CDS 73542041 73542348 73542041 ID=MsG0380015677.01.T01:cds;Parent=MsG0380015677.01.T01
Chr3 CDS 73542683 73543346 73542683 ID=MsG0380015677.01.T01:cds;Parent=MsG0380015677.01.T01
Chr3 mRNA 73541435 73543346 73541435 ID=MsG0380015677.01.T02;Parent=MsG0380015677.01;Name=MsG0380015677.01.T02;_AED=0.49;_eAED=0.49;_QI=606|0|0.5|1|1|1|2|0|323
Chr3 exon 73541435 73542348 73541435 ID=MsG0380015677.01.T02:exon:24279;Parent=MsG0380015677.01.T02
Chr3 five_prime_UTR 73541435 73542040 73541435 ID=MsG0380015677.01.T02:five_prime_utr;Parent=MsG0380015677.01.T02
Chr3 CDS 73542041 73542348 73542041 ID=MsG0380015677.01.T02:cds;Parent=MsG0380015677.01.T02
Chr3 CDS 73542683 73543346 73542683 ID=MsG0380015677.01.T02:cds;Parent=MsG0380015677.01.T02
Gene Sequence

>MsG0380015677.01.T02

ATGGGAGAAGCAGGTGAATTACGAAGTTGGGATGAATTGATTCCTGATGCATTAGGGGTGATCTTCACAAATCTTTCTCTGAAAGAGAGAGTGACAGTGATTCCAAGGGTATGTAAATCATGGTGTAAAGCAGTTTCTGGACCTAATTGTTGGCAAGAGATAGATATTGAAGAATGGAGCAACTATTGCCAACCTGACAAACTTGATCAGATGCTTCATATGCTTATCAGTAAAAGTTGTGGATCTCTCAGAAAGCTGTGTGTTTCTGGTCTTCAAACTGAGACCATTTTCACTTTCATTGCTGAAAACTTTTTATACTCTTTTGCAAGTGCTGGTTCCCTTCGGAGTTTGAGACTACCAAGGAGCAATATGAGCGATTTGGTTGTGGAACAGATTGCTGGAAAATTTTCTATGATAACTTTCTTGGATGTGAGCTATTGTATCAAAATTGGTGCGTGTGCAATTGAGATGATAGGCAAGAACTGCAAACTGCTAGAAGAGTTGTGTAGGAATATGCATCCATTGGATACCGCCGGCAAGCCATTACAAGATGACGAGGCATATGCAATTGCAACCACAATGCCGAAGCTCAAGCATCTTGAAATGGCTTATCATAGGATCAGCACTTCGGGGGTTGTTCAAATACTTTCAAACTGTCCAAAGCTTGAATTTTTGGATCTGAGGGGTTGTTGGGGTGTTAACCTAGACGAAAACAAATCAGCAAAGCAGAGTTTTCCAAAACTTAAAGTTTTGGGGCCTTTTGTTCTTGGTGCTTATGAGAGTGATGGTTGGGAAGATGATGACTACTCAGATGTATCAGATGAGTATCTAGCTTGGGATTTTGTAGCTGGTAATGAATACTATGTTGATGATGATAGTGATGGTTATGAAGGAAGGATAGATGATGAGCTTGAATTTGGATTATATGAAGGTATAGAAGATGCAGGAATGTATTGGCCTCCATCACCATAA

>MsG0380015677.01.T01

ATGGGAGAAGCAGGTGAATTACGAAGTTGGGATGAATTGATTCCTGATGCATTAGGGGTGATCTTCACAAATCTTTCTCTGAAAGAGAGAGTGACAGTGATTCCAAGGGTATGTAAATCATGGTGTAAAGCAGTTTCTGGACCTAATTGTTGGCAAGAGATAGATATTGAAGAATGGAGCAACTATTGCCAACCTGACAAACTTGATCAGATGCTTCATATGCTTATCAGTAAAAGTTGTGGATCTCTCAGAAAGCTGTGTGTTTCTGGTCTTCAAACTGAGACCATTTTCACTTTCATTGCTGAAAACTTTTTATACTCTTTTGCAAGTGCTGGTTCCCTTCGGAGTTTGAGACTACCAAGGAGCAATATGAGCGATTTGGTTGTGGAACAGATTGCTGGAAAATTTTCTATGATAACTTTCTTGGATGTGAGCTATTGTATCAAAATTGGTGCGTGTGCAATTGAGATGATAGGCAAGAACTGCAAACTGCTAGAAGAGTTGTGTAGGAATATGCATCCATTGGATACCGCCGGCAAGCCATTACAAGATGACGAGGCATATGCAATTGCAACCACAATGCCGAAGCTCAAGCATCTTGAAATGGCTTATCATAGGATCAGCACTTCGGGGGTTGTTCAAATACTTTCAAACTGTCCAAAGCTTGAATTTTTGGATCTGAGGGGTTGTTGGGGTGTTAACCTAGACGAAAACAAATCAGCAAAGCAGAGTTTTCCAAAACTTAAAGTTTTGGGGCCTTTTGTTCTTGGTGCTTATGAGAGTGATGGTTGGGAAGATGATGACTACTCAGATGTATCAGATGAGTATCTAGCTTGGGATTTTGTAGCTGGTAATGAATACTATGTTGATGATGATAGTGATGGTTATGAAGGAAGGATAGATGATGAGCTTGAATTTGGATTATATGAAGGTATAGAAGATGCAGGAATGTATTGGCCTCCATCACCATAA

Protein sequence

>MsG0380015677.01.T02

MGEAGELRSWDELIPDALGVIFTNLSLKERVTVIPRVCKSWCKAVSGPNCWQEIDIEEWSNYCQPDKLDQMLHMLISKSCGSLRKLCVSGLQTETIFTFIAENFLYSFASAGSLRSLRLPRSNMSDLVVEQIAGKFSMITFLDVSYCIKIGACAIEMIGKNCKLLEELCRNMHPLDTAGKPLQDDEAYAIATTMPKLKHLEMAYHRISTSGVVQILSNCPKLEFLDLRGCWGVNLDENKSAKQSFPKLKVLGPFVLGAYESDGWEDDDYSDVSDEYLAWDFVAGNEYYVDDDSDGYEGRIDDELEFGLYEGIEDAGMYWPPSP*

>MsG0380015677.01.T01

MGEAGELRSWDELIPDALGVIFTNLSLKERVTVIPRVCKSWCKAVSGPNCWQEIDIEEWSNYCQPDKLDQMLHMLISKSCGSLRKLCVSGLQTETIFTFIAENFLYSFASAGSLRSLRLPRSNMSDLVVEQIAGKFSMITFLDVSYCIKIGACAIEMIGKNCKLLEELCRNMHPLDTAGKPLQDDEAYAIATTMPKLKHLEMAYHRISTSGVVQILSNCPKLEFLDLRGCWGVNLDENKSAKQSFPKLKVLGPFVLGAYESDGWEDDDYSDVSDEYLAWDFVAGNEYYVDDDSDGYEGRIDDELEFGLYEGIEDAGMYWPPSP*