AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008280.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008280.01.T01 MTR_2g038200 95.525 1028 24 4 1 1025 1 1009 0.0 2009
MsG0280008280.01.T01 MTR_4g127290 50.610 656 215 21 397 1025 247 820 1.21e-175 533
MsG0280008280.01.T01 MTR_4g127290 62.097 248 54 8 1 212 1 244 7.10e-67 241
MsG0280008280.01.T01 MTR_4g129230 30.351 1084 554 41 1 983 1 984 3.27e-109 363
MsG0280008280.01.T01 MTR_1g090640 39.560 546 250 18 1 519 1 493 6.76e-102 340
MsG0280008280.01.T01 MTR_1g057150 39.560 546 237 18 1 519 1 480 2.52e-99 332
MsG0280008280.01.T01 MTR_3g464150 30.702 570 278 25 1 517 1 506 1.25e-35 147
MsG0280008280.01.T01 MTR_5g071060 29.494 573 293 22 1 549 1 486 9.70e-35 144
MsG0280008280.01.T01 MTR_5g071060 29.916 595 295 26 1 549 1 519 3.43e-34 142
MsG0280008280.01.T01 MTR_3g070850 32.464 422 214 14 1 397 1 376 1.69e-33 140
MsG0280008280.01.T01 MTR_4g109450 30.078 256 144 9 26 280 20 241 2.07e-17 88.2
MsG0280008280.01.T01 MTR_4g109450 30.078 256 144 9 26 280 20 241 3.37e-17 87.4
MsG0280008280.01.T01 MTR_7g028970 28.458 253 146 8 26 277 20 238 9.04e-16 82.8
MsG0280008280.01.T01 MTR_1384s0010 52.632 76 30 3 52 124 32 104 1.61e-14 70.9
MsG0280008280.01.T01 MTR_1183s0010 46.392 97 46 3 86 179 16 109 3.62e-14 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008280.01.T01 AT4G29920 41.413 1118 454 41 1 1019 1 1016 0.0 656
MsG0280008280.01.T01 AT4G29920 41.234 1118 453 40 1 1019 1 1013 0.0 654
MsG0280008280.01.T01 AT5G57130 41.166 1132 451 48 1 1022 1 1027 0.0 624
MsG0280008280.01.T01 AT3G52490 40.892 538 224 17 1 515 1 467 2.23e-102 340
MsG0280008280.01.T01 AT5G57710 32.304 842 426 30 1 777 1 763 9.85e-98 332
MsG0280008280.01.T01 AT4G30350 38.267 554 255 18 1 517 1 504 7.71e-80 280
MsG0280008280.01.T01 AT2G29970 27.009 1070 584 43 1 981 1 962 6.54e-54 204
MsG0280008280.01.T01 AT1G07200 27.231 874 469 37 1 798 1 783 5.16e-45 177
MsG0280008280.01.T01 AT2G40130 31.640 433 239 17 1 411 1 398 8.35e-41 163
MsG0280008280.01.T01 AT2G40130 31.640 433 239 17 1 411 1 398 8.74e-41 163
MsG0280008280.01.T01 AT1G74310 26.953 256 152 9 26 280 20 241 7.18e-15 80.1
MsG0280008280.01.T01 AT1G74310 26.953 256 152 9 26 280 20 241 1.14e-14 79.3

Find 167 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAATTGTTAACTACTTAA+TGG 0.116030 2:+28559599 MsG0280008280.01.T01:CDS
ATAATTCATCATACCCTTAT+TGG 0.138198 2:+28558155 MsG0280008280.01.T01:CDS
AAAATGGGATAGTGGGTTTA+TGG 0.183846 2:+28559554 MsG0280008280.01.T01:CDS
CTTGTCAAATCACTTGAAAT+TGG 0.210696 2:-28559201 None:intergenic
CTACCTTGGTTTGGCCAATA+AGG 0.218068 2:-28558169 None:intergenic
CAATGAAAAGTTTGTTGTTT+TGG 0.224683 2:+28558753 MsG0280008280.01.T01:CDS
AACCATTTCTTGAGTTCTTA+TGG 0.228156 2:+28555828 MsG0280008280.01.T01:CDS
GATATTGAACTTGGTGTATC+TGG 0.233918 2:-28558202 None:intergenic
GCTAAGTATGTACGGTATTC+TGG 0.242181 2:+28557020 MsG0280008280.01.T01:intron
TTCTTGAGTTCTTATGGTTA+TGG 0.246625 2:+28555834 MsG0280008280.01.T01:CDS
CCATTAAGTAGTTAACAATT+TGG 0.247388 2:-28559599 None:intergenic
TAAGGGTATGATGAATTATA+AGG 0.279485 2:-28558151 None:intergenic
ATTGCAAAGTTTGGAACTTT+AGG 0.282514 2:+28558835 MsG0280008280.01.T01:CDS
ACAAGTTTAGAGAGGGTTAA+TGG 0.285676 2:+28559477 MsG0280008280.01.T01:CDS
AGAAGAATCTGTTGCCTTCA+TGG 0.287597 2:+28557642 MsG0280008280.01.T01:CDS
TTCTTTGAAGTATATGAAAA+AGG 0.292144 2:+28556118 MsG0280008280.01.T01:CDS
CTTGGAATTGGATTCTCTTA+AGG 0.294768 2:+28558357 MsG0280008280.01.T01:CDS
CCTGTTCCATCTGGTGGACT+TGG 0.302111 2:+28556440 MsG0280008280.01.T01:CDS
TATAGTTTATACACTTTGTT+GGG 0.306813 2:+28559515 MsG0280008280.01.T01:CDS
TTGGAATTGGATTCTCTTAA+GGG 0.308860 2:+28558358 MsG0280008280.01.T01:CDS
GATTATGTTGTGGAAGAAAT+AGG 0.322451 2:+28556287 MsG0280008280.01.T01:CDS
CCAAGGATTGAAGAAAATAA+AGG 0.323678 2:+28559063 MsG0280008280.01.T01:CDS
GTCATTTCCTTGTTCTTAGC+TGG 0.323821 2:-28559300 None:intergenic
AGTAACAACAACCTTGGAAT+TGG 0.329743 2:+28558345 MsG0280008280.01.T01:CDS
TCATCAAAATCACCTTGTTT+AGG 0.334064 2:+28558994 MsG0280008280.01.T01:CDS
GGAACAAGAATGGTAAGATT+TGG 0.338899 2:+28556330 MsG0280008280.01.T01:CDS
GTTAGTGATTATGTTGCATT+AGG 0.341264 2:+28556182 MsG0280008280.01.T01:CDS
ATGTTTGAGAAATGGCTAAA+AGG 0.352149 2:+28559444 MsG0280008280.01.T01:CDS
GATAAGGTGATAGAGGAAAT+TGG 0.356476 2:+28559393 MsG0280008280.01.T01:CDS
CTAACAACATGTTTGAGAAA+TGG 0.359340 2:+28559436 MsG0280008280.01.T01:CDS
AGTAGAGTTATGAGAGAAGC+TGG 0.362568 2:+28555714 MsG0280008280.01.T01:CDS
GTGGTTGCTGCTGCTGTTGT+TGG 0.363016 2:-28555629 None:intergenic
AAATGGGATAGTGGGTTTAT+GGG 0.369377 2:+28559555 MsG0280008280.01.T01:CDS
GGCAACAGATTCTTCTGGTC+TGG 0.371234 2:-28557635 None:intergenic
TACCTTGGTTTGGCCAATAA+GGG 0.372431 2:-28558168 None:intergenic
TTGGTTGAAAATGCTGATTT+TGG 0.372782 2:+28558772 MsG0280008280.01.T01:CDS
AGATGTAAAATGCAAGTAAT+AGG 0.372867 2:+28559664 MsG0280008280.01.T01:three_prime_UTR
GAATTTGAGATTGCAAAGTT+TGG 0.378824 2:+28558826 MsG0280008280.01.T01:CDS
GTTTGAGCTATAAGCTGGTT+TGG 0.382997 2:-28558242 None:intergenic
CAAGCTGTTCCTGTTCCATC+TGG 0.386300 2:+28556431 MsG0280008280.01.T01:CDS
ATTCCAAGGTTGTTGTTACT+TGG 0.386999 2:-28558342 None:intergenic
GTACGGTATTCTGGACTATA+TGG 0.388202 2:+28557029 MsG0280008280.01.T01:CDS
GCAATTGCAGAATCAGTGTT+TGG 0.389107 2:+28558640 MsG0280008280.01.T01:CDS
CGCGACGGAACCGAGGTATA+AGG 0.416162 2:-28558264 None:intergenic
ATCATTGAAGTTGAACTCAA+TGG 0.420697 2:-28558302 None:intergenic
TGCAAGGAAATGATTCTGTT+GGG 0.420831 2:+28558599 MsG0280008280.01.T01:CDS
GGAAAGTTGTTTGGTGAAGA+AGG 0.427180 2:+28556308 MsG0280008280.01.T01:CDS
TCATATATATAAAGTGTTGC+AGG 0.428362 2:+28558483 MsG0280008280.01.T01:CDS
GTGGTAAAGAGGATAGAAAA+TGG 0.429390 2:+28559538 MsG0280008280.01.T01:CDS
ATTGATCATATCACTGACTT+TGG 0.429568 2:+28559622 MsG0280008280.01.T01:exon
CATCAAAGGAATGTGCTACT+TGG 0.430549 2:+28558569 MsG0280008280.01.T01:CDS
CACCATTGATTCTCAAAAGT+TGG 0.432170 2:-28556404 None:intergenic
TAGTTCAATAGCAGAAGCTT+TGG 0.437063 2:+28558534 MsG0280008280.01.T01:CDS
CAAGGATTGAAGAAAATAAA+GGG 0.440205 2:+28559064 MsG0280008280.01.T01:CDS
TCTTTAACTGAAGGACTAGT+TGG 0.442649 2:+28556008 MsG0280008280.01.T01:CDS
AACCATAAGAACTCAAGAAA+TGG 0.445877 2:-28555830 None:intergenic
TGGAGATTTGAAGTGGATAG+TGG 0.446714 2:+28556226 MsG0280008280.01.T01:CDS
GAAGGATTCAGTGATGAAGT+TGG 0.452059 2:+28558912 MsG0280008280.01.T01:CDS
GAGGATAGAAAATGGGATAG+TGG 0.454439 2:+28559546 MsG0280008280.01.T01:CDS
GTATAGTTTATACACTTTGT+TGG 0.454781 2:+28559514 MsG0280008280.01.T01:CDS
CAAATTCTCAATTGAGTCTA+GGG 0.457600 2:-28559259 None:intergenic
ATTGGATTCTCTTAAGGGTA+TGG 0.458957 2:+28558363 MsG0280008280.01.T01:CDS
GTGATAGAGGAAATTGGTGT+AGG 0.463249 2:+28559399 MsG0280008280.01.T01:CDS
CACTGACTTTGGTTAGTAGT+GGG 0.465490 2:+28559633 MsG0280008280.01.T01:three_prime_UTR
TTGCAAGGAAATGATTCTGT+TGG 0.465938 2:+28558598 MsG0280008280.01.T01:CDS
TGTACAAGATAAGGTGATAG+AGG 0.466717 2:+28559386 MsG0280008280.01.T01:CDS
AAGATACTACTACCTTGGTT+TGG 0.466919 2:-28558178 None:intergenic
ATTGACAATACTGCCACCAT+TGG 0.472037 2:-28558878 None:intergenic
AAAATTTAGTGTACAAGATA+AGG 0.472610 2:+28559377 MsG0280008280.01.T01:CDS
ACAAATTCTCAATTGAGTCT+AGG 0.473106 2:-28559260 None:intergenic
TTTGAGGTTGTTTGTTCTGG+TGG 0.473926 2:-28558087 None:intergenic
TCAAAACCCATCTCCTATGC+TGG 0.480572 2:+28557517 MsG0280008280.01.T01:CDS
AACAGAAGGGTCATCAAGAA+TGG 0.480936 2:-28555691 None:intergenic
CTGGCAAGATACTACTACCT+TGG 0.481842 2:-28558183 None:intergenic
AAGGGTATGATGAATTATAA+GGG 0.483177 2:-28558150 None:intergenic
AAAGGTGAAGTAGTAGTAGT+TGG 0.486118 2:-28555510 None:intergenic
ATAAGGTTTGAGCTATAAGC+TGG 0.487817 2:-28558247 None:intergenic
ATGAAGGCAACAGATTCTTC+TGG 0.489093 2:-28557640 None:intergenic
GCTGTTCCTGTTCCATCTGG+TGG 0.490790 2:+28556434 MsG0280008280.01.T01:CDS
AACTATGATTGTTGCTCCAA+TGG 0.491661 2:-28558111 None:intergenic
GAGCTCAAGCTCATCAAAGA+AGG 0.494543 2:+28555589 MsG0280008280.01.T01:CDS
GTTTGAGTCTTCATTCATCA+AGG 0.497632 2:+28556462 MsG0280008280.01.T01:CDS
AGGATAGAAAATGGGATAGT+GGG 0.497966 2:+28559547 MsG0280008280.01.T01:CDS
GATTTGACAAGAGAAACATT+AGG 0.500539 2:+28559213 MsG0280008280.01.T01:CDS
ATGTTATAAGAGTGTTGAAA+AGG 0.504959 2:+28556156 MsG0280008280.01.T01:CDS
GAAAGTTGTTTGGTGAAGAA+GGG 0.506532 2:+28556309 MsG0280008280.01.T01:CDS
TCAACTTTAACACTCAAAAG+TGG 0.507140 2:-28555648 None:intergenic
ATAAGGGTAGATCTTTGCAT+TGG 0.508400 2:-28558134 None:intergenic
GGCACTGTGAAAAGCATTGT+TGG 0.509221 2:+28557057 MsG0280008280.01.T01:CDS
ATTAGAAGTTACACAAAAGA+AGG 0.509570 2:-28559689 None:intergenic
CCAAGTCCACCAGATGGAAC+AGG 0.510866 2:-28556440 None:intergenic
TCAATCTTGAAGCACTCTCT+AGG 0.512470 2:+28555312 MsG0280008280.01.T01:CDS
GATGGTGATAACTCCAAAGT+TGG 0.513208 2:-28558964 None:intergenic
GGTTGATTCAAAATCATCAA+AGG 0.514321 2:+28558555 MsG0280008280.01.T01:CDS
TGGTAAAGAGGATAGAAAAT+GGG 0.517397 2:+28559539 MsG0280008280.01.T01:CDS
TCACTGACTTTGGTTAGTAG+TGG 0.518331 2:+28559632 MsG0280008280.01.T01:three_prime_UTR
GTTGGAGCTATATTCTATGT+TGG 0.520127 2:+28556206 MsG0280008280.01.T01:CDS
TTGATTCCAGCATAGGAGAT+GGG 0.522179 2:-28557523 None:intergenic
ACTTTGTTGGGGTGGTAAAG+AGG 0.524368 2:+28559527 MsG0280008280.01.T01:CDS
GAGGAAATTGGTGTAGGGTG+TGG 0.525237 2:+28559405 MsG0280008280.01.T01:CDS
AGAAGATGAAGACTATGATG+AGG 0.527194 2:+28559167 MsG0280008280.01.T01:CDS
GATACAGTTTCTTTAACTGA+AGG 0.527453 2:+28555999 MsG0280008280.01.T01:CDS
CTGACTTTGGTTAGTAGTGG+GGG 0.527571 2:+28559635 MsG0280008280.01.T01:three_prime_UTR
TTTGATTCCAGCATAGGAGA+TGG 0.528413 2:-28557524 None:intergenic
TGGATAGTGGATGATAATGA+TGG 0.530923 2:+28556239 MsG0280008280.01.T01:CDS
TATAAGAGTGTTGAAAAGGA+AGG 0.531869 2:+28556160 MsG0280008280.01.T01:CDS
GCATTTCTTAAAGAAGAAGA+TGG 0.533196 2:-28555402 None:intergenic
GAAGATGAAGACTATGATGA+GGG 0.534488 2:+28559168 MsG0280008280.01.T01:CDS
GAAGAAATAGGAAAGTTGTT+TGG 0.534540 2:+28556299 MsG0280008280.01.T01:CDS
CTTGGAAATTCAACATTCAG+TGG 0.534821 2:+28558418 MsG0280008280.01.T01:CDS
GACAAAGATGTTTATGTCAA+GGG 0.535057 2:+28559320 MsG0280008280.01.T01:CDS
GTTTATACACTTTGTTGGGG+TGG 0.536531 2:+28559519 MsG0280008280.01.T01:CDS
GTTTAGAGAGGGTTAATGGT+GGG 0.538900 2:+28559481 MsG0280008280.01.T01:CDS
TGACAAAGATGTTTATGTCA+AGG 0.539341 2:+28559319 MsG0280008280.01.T01:CDS
GATTATGTTGCATTAGGTGT+TGG 0.539481 2:+28556188 MsG0280008280.01.T01:CDS
GGTGAAGAAGGGAACAAGAA+TGG 0.542309 2:+28556320 MsG0280008280.01.T01:CDS
AGCTCAAGCTCATCAAAGAA+GGG 0.544619 2:+28555590 MsG0280008280.01.T01:CDS
CTCATAACTCTACTAACAGA+AGG 0.547154 2:-28555705 None:intergenic
ACAAACAACCTCAAAACCAT+TGG 0.547893 2:+28558095 MsG0280008280.01.T01:CDS
TAGCAAATTGTAATGCGCTC+AGG 0.548048 2:+28555249 None:intergenic
ATAATGAAAAGATTTGAAAG+AGG 0.551174 2:+28556035 MsG0280008280.01.T01:CDS
GTAAAGACAACTCTTGCACT+TGG 0.555155 2:+28558400 MsG0280008280.01.T01:CDS
TCAACAAAAGATATTGAACT+TGG 0.555816 2:-28558211 None:intergenic
CTTAAGAGAATCCAATTCCA+AGG 0.560395 2:-28558356 None:intergenic
GATTCTCTTAAGGGTATGGA+AGG 0.560727 2:+28558367 MsG0280008280.01.T01:CDS
ATAGCTCAAACCTTATACCT+CGG 0.563384 2:+28558254 MsG0280008280.01.T01:CDS
AAACCAAGTAACAACAACCT+TGG 0.563498 2:+28558339 MsG0280008280.01.T01:CDS
TTAGAGAGGGTTAATGGTGG+GGG 0.564593 2:+28559483 MsG0280008280.01.T01:CDS
TCTATGTTGGAGATTTGAAG+TGG 0.565268 2:+28556219 MsG0280008280.01.T01:CDS
ACTGACTTTGGTTAGTAGTG+GGG 0.567654 2:+28559634 MsG0280008280.01.T01:three_prime_UTR
CTAACTGTTTCACATTGCCA+TGG 0.568665 2:-28558514 None:intergenic
TGATAGAGGAAATTGGTGTA+GGG 0.570147 2:+28559400 MsG0280008280.01.T01:CDS
CTTCAAGATTGAAGCAGCCT+CGG 0.571682 2:-28555301 None:intergenic
AGTGTAGCAGCAACGTGAAG+AGG 0.575327 2:-28555369 None:intergenic
TAGCACAGAAGCACGTCAGA+AGG 0.576747 2:+28557676 MsG0280008280.01.T01:CDS
TTTAGAGAGGGTTAATGGTG+GGG 0.579670 2:+28559482 MsG0280008280.01.T01:CDS
TGTCAATGAAGATCAGAAGA+AGG 0.579932 2:+28558894 MsG0280008280.01.T01:CDS
AAAATATTCATATTGTCCAA+TGG 0.583934 2:+28558862 MsG0280008280.01.T01:CDS
AATTTGTGGCTAAGTATGTA+CGG 0.584942 2:+28557012 MsG0280008280.01.T01:intron
ATAGTTTATACACTTTGTTG+GGG 0.593962 2:+28559516 MsG0280008280.01.T01:CDS
GGTAAAAGAGTCATTTGAGG+AGG 0.594837 2:+28559341 MsG0280008280.01.T01:CDS
TCAAGAGCTCTACATTGAAG+AGG 0.598089 2:-28555456 None:intergenic
CTATGAGACTGAAGCCATGA+AGG 0.600566 2:-28557656 None:intergenic
ACATGCTGTGGTTGAAGCAA+AGG 0.603439 2:-28555528 None:intergenic
AGTTTAGAGAGGGTTAATGG+TGG 0.613323 2:+28559480 MsG0280008280.01.T01:CDS
CTAGGCTTAGCACGTAGAAG+AGG 0.615440 2:+28555330 MsG0280008280.01.T01:CDS
CTCAAACCAAGTCCACCAGA+TGG 0.615673 2:-28556446 None:intergenic
ATGAGTGCATTAGAAAGTGA+AGG 0.616666 2:-28555552 None:intergenic
AAGGGTAAAAGAGTCATTTG+AGG 0.622133 2:+28559338 MsG0280008280.01.T01:CDS
CTGTGAAAAGCATTGTTGGT+TGG 0.622887 2:+28557061 MsG0280008280.01.T01:CDS
GCTCAAGCTCATCAAAGAAG+GGG 0.624859 2:+28555591 MsG0280008280.01.T01:CDS
AGAGGTTGTTGATTATGTTG+TGG 0.625094 2:+28556277 MsG0280008280.01.T01:CDS
TCAAAGTCCAGCTAAGAACA+AGG 0.627959 2:+28559293 MsG0280008280.01.T01:CDS
ATTCTGGACTATATGGCAGA+AGG 0.637982 2:+28557036 MsG0280008280.01.T01:CDS
TGTTGTCCGCGACGGAACCG+AGG 0.638050 2:-28558271 None:intergenic
AAATGGTTATGACTAAGAGA+AGG 0.639749 2:-28555813 None:intergenic
ATATTCATATTGTCCAATGG+TGG 0.641525 2:+28558865 MsG0280008280.01.T01:CDS
TCATAACTCTACTAACAGAA+GGG 0.643236 2:-28555704 None:intergenic
TACCCTTATTGGCCAAACCA+AGG 0.646502 2:+28558166 MsG0280008280.01.T01:CDS
GAAGAGGTGTGATTTGTGCA+TGG 0.654069 2:-28555353 None:intergenic
TGTTGCAGGAGAATGTTCCA+TGG 0.660728 2:+28558497 MsG0280008280.01.T01:CDS
CTCAAGCTCATCAAAGAAGG+GGG 0.661271 2:+28555592 MsG0280008280.01.T01:CDS
CTAGTTATCAAAGTTACATG+AGG 0.668274 2:+28556366 MsG0280008280.01.T01:CDS
GAAAGTGAAGGAACATGCTG+TGG 0.672616 2:-28555540 None:intergenic
TGCATGATTGTTGTCCGCGA+CGG 0.675917 2:-28558279 None:intergenic
CTTATACCTCGGTTCCGTCG+CGG 0.679756 2:+28558265 MsG0280008280.01.T01:CDS
GCAAGAGACACTAACAGCCG+AGG 0.683106 2:+28555284 MsG0280008280.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATTTTTATTTTAAATA+TGG + Chr2:28556927-28556946 MsG0280008280.01.T01:intron 0.0%
!! AAAAAAAAATACAAAAAAGA+GGG + Chr2:28556857-28556876 MsG0280008280.01.T01:intron 10.0%
!! TAAAAAAAAATACAAAAAAG+AGG + Chr2:28556856-28556875 MsG0280008280.01.T01:intron 10.0%
!! AAAACAAAAAACATATATGA+AGG + Chr2:28556567-28556586 MsG0280008280.01.T01:intron 15.0%
!! CAATAATACACAAAATATAT+CGG - Chr2:28557402-28557421 None:intergenic 15.0%
!!! AGTGTTTATTTGTTTAATTT+TGG + Chr2:28557435-28557454 MsG0280008280.01.T01:intron 15.0%
!!! TTAACAATTTGGATATTTTT+AGG - Chr2:28559591-28559610 None:intergenic 15.0%
!! AAAATATTCATATTGTCCAA+TGG + Chr2:28558862-28558881 MsG0280008280.01.T01:CDS 20.0%
!! AAAATTTAGTGTACAAGATA+AGG + Chr2:28559377-28559396 MsG0280008280.01.T01:CDS 20.0%
!! ATAATGAAAAGATTTGAAAG+AGG + Chr2:28556035-28556054 MsG0280008280.01.T01:CDS 20.0%
!! ATCATTAGATCAAAATTAGA+CGG + Chr2:28557900-28557919 MsG0280008280.01.T01:intron 20.0%
!! ATGATTAAAATGTTTCAACT+AGG - Chr2:28557885-28557904 None:intergenic 20.0%
!! GTCTTTCATTAGTAAATTTA+TGG - Chr2:28556675-28556694 None:intergenic 20.0%
!! TATAGTTTATACACTTTGTT+GGG + Chr2:28559515-28559534 MsG0280008280.01.T01:CDS 20.0%
!!! AAAATTTTCTGAGTCTAATA+AGG + Chr2:28555911-28555930 MsG0280008280.01.T01:CDS 20.0%
!!! AACTTTTCATTGTTTTTCAA+TGG - Chr2:28558745-28558764 None:intergenic 20.0%
!!! CAATTCAATGTTTTTTTTTC+AGG + Chr2:28558015-28558034 MsG0280008280.01.T01:intron 20.0%
!!! CGATATATTTTGTGTATTAT+TGG + Chr2:28557400-28557419 MsG0280008280.01.T01:intron 20.0%
!!! TAAGAATAAATAGTCCTTTT+TGG + Chr2:28556517-28556536 MsG0280008280.01.T01:intron 20.0%
!!! TGGACAATATGAATATTTTT+TGG - Chr2:28558861-28558880 None:intergenic 20.0%
!!! TTAATTTGTTTTGCAATTTG+TGG + Chr2:28556998-28557017 MsG0280008280.01.T01:intron 20.0%
!!! TTACTTTATGATATTGCTTT+TGG - Chr2:28557205-28557224 None:intergenic 20.0%
!!! TTCTTTGAAGTATATGAAAA+AGG + Chr2:28556118-28556137 MsG0280008280.01.T01:CDS 20.0%
!!! TTTTGTAATTTTGATACAGT+CGG + Chr2:28556806-28556825 MsG0280008280.01.T01:intron 20.0%
! AGATGTAAAATGCAAGTAAT+AGG + Chr2:28559664-28559683 MsG0280008280.01.T01:three_prime_UTR 25.0%
! ATAATTCATCATACCCTTAT+TGG + Chr2:28558155-28558174 MsG0280008280.01.T01:CDS 25.0%
! ATAGTTTATACACTTTGTTG+GGG + Chr2:28559516-28559535 MsG0280008280.01.T01:CDS 25.0%
! ATGATAAGTGTTTATGTGAA+AGG + Chr2:28556975-28556994 MsG0280008280.01.T01:intron 25.0%
! ATTAGAAGTTACACAAAAGA+AGG - Chr2:28559692-28559711 None:intergenic 25.0%
! CAAGGATTGAAGAAAATAAA+GGG + Chr2:28559064-28559083 MsG0280008280.01.T01:CDS 25.0%
! CCAAATTGTTAACTACTTAA+TGG + Chr2:28559599-28559618 MsG0280008280.01.T01:CDS 25.0%
! CCATTAAGTAGTTAACAATT+TGG - Chr2:28559602-28559621 None:intergenic 25.0%
! GTATAGTTTATACACTTTGT+TGG + Chr2:28559514-28559533 MsG0280008280.01.T01:CDS 25.0%
! TATTTAAGAGAATGAAACGT+TGG - Chr2:28557265-28557284 None:intergenic 25.0%
! TCAACAAAAGATATTGAACT+TGG - Chr2:28558214-28558233 None:intergenic 25.0%
! TCCTTCTGTTAAAAACAATT+TGG + Chr2:28555746-28555765 MsG0280008280.01.T01:CDS 25.0%
! TTACTAACAAAACACGTTTA+AGG + Chr2:28556779-28556798 MsG0280008280.01.T01:intron 25.0%
! TTAGCAAAATAAAAACTCCA+AGG + Chr2:28559046-28559065 MsG0280008280.01.T01:CDS 25.0%
! TTTGTATTCTTGTACAAGTT+GGG - Chr2:28557723-28557742 None:intergenic 25.0%
!! AAGGGTATGATGAATTATAA+GGG - Chr2:28558153-28558172 None:intergenic 25.0%
!! CTTCTTTTATTACCTAAACA+AGG - Chr2:28559009-28559028 None:intergenic 25.0%
!! TAAGGGTATGATGAATTATA+AGG - Chr2:28558154-28558173 None:intergenic 25.0%
!! TTGATGTATGTTTGAAATAG+TGG + Chr2:28557984-28558003 MsG0280008280.01.T01:intron 25.0%
!! TTTTCAAACAAGTTTAGAGA+GGG + Chr2:28559470-28559489 MsG0280008280.01.T01:CDS 25.0%
!! TTTTGTATTCTTGTACAAGT+TGG - Chr2:28557724-28557743 None:intergenic 25.0%
!!! ATCAAAGTTTTTCAGTAACA+AGG + Chr2:28557541-28557560 MsG0280008280.01.T01:CDS 25.0%
!!! ATGTTATAAGAGTGTTGAAA+AGG + Chr2:28556156-28556175 MsG0280008280.01.T01:CDS 25.0%
!!! CAATGAAAAGTTTGTTGTTT+TGG + Chr2:28558753-28558772 MsG0280008280.01.T01:CDS 25.0%
!!! GACTCAGAAAATTTTAAGAA+AGG - Chr2:28555906-28555925 None:intergenic 25.0%
!!! GTGTATTTTGTTACTTAGTT+TGG + Chr2:28556589-28556608 MsG0280008280.01.T01:intron 25.0%
!!! GTTTAATTTTGGATGCTAAT+TGG + Chr2:28557446-28557465 MsG0280008280.01.T01:intron 25.0%
!!! TCATATATATAAAGTGTTGC+AGG + Chr2:28558483-28558502 MsG0280008280.01.T01:CDS 25.0%
!!! TCCAAATTGTTTTTAACAGA+AGG - Chr2:28555750-28555769 None:intergenic 25.0%
!!! TTGAGCTTCTTTTTCATAAT+TGG - Chr2:28557606-28557625 None:intergenic 25.0%
!!! TTGTTTTTGATGTTCTTTTG+AGG + Chr2:28555946-28555965 MsG0280008280.01.T01:CDS 25.0%
!!! TTTTTCAAACAAGTTTAGAG+AGG + Chr2:28559469-28559488 MsG0280008280.01.T01:CDS 25.0%
AAAAACTTTGATTCCAGCAT+AGG - Chr2:28557533-28557552 None:intergenic 30.0%
AAATGGTTATGACTAAGAGA+AGG - Chr2:28555816-28555835 None:intergenic 30.0%
AACCATAAGAACTCAAGAAA+TGG - Chr2:28555833-28555852 None:intergenic 30.0%
AACCATTTCTTGAGTTCTTA+TGG + Chr2:28555828-28555847 MsG0280008280.01.T01:CDS 30.0%
AACTGAGAAAAAACCAACTT+TGG + Chr2:28558951-28558970 MsG0280008280.01.T01:CDS 30.0%
AAGAAAAACACTGTGATAGT+TGG + Chr2:28555975-28555994 MsG0280008280.01.T01:CDS 30.0%
AATTTGTGGCTAAGTATGTA+CGG + Chr2:28557012-28557031 MsG0280008280.01.T01:intron 30.0%
ACTAGGATACGATAAATGTA+TGG - Chr2:28557868-28557887 None:intergenic 30.0%
ATATTCATATTGTCCAATGG+TGG + Chr2:28558865-28558884 MsG0280008280.01.T01:CDS 30.0%
ATCATTGAAGTTGAACTCAA+TGG - Chr2:28558305-28558324 None:intergenic 30.0%
ATGATTCTGTTGGGAAAAAA+AGG + Chr2:28558608-28558627 MsG0280008280.01.T01:CDS 30.0%
ATGTTTGAGAAATGGCTAAA+AGG + Chr2:28559444-28559463 MsG0280008280.01.T01:CDS 30.0%
CAAAACCTCTTTAGACATTA+CGG + Chr2:28557143-28557162 MsG0280008280.01.T01:intron 30.0%
CCAAGGATTGAAGAAAATAA+AGG + Chr2:28559063-28559082 MsG0280008280.01.T01:CDS 30.0%
CTAACAACATGTTTGAGAAA+TGG + Chr2:28559436-28559455 MsG0280008280.01.T01:CDS 30.0%
CTAGTTATCAAAGTTACATG+AGG + Chr2:28556366-28556385 MsG0280008280.01.T01:CDS 30.0%
CTTGTCAAATCACTTGAAAT+TGG - Chr2:28559204-28559223 None:intergenic 30.0%
GAAGAAATAGGAAAGTTGTT+TGG + Chr2:28556299-28556318 MsG0280008280.01.T01:CDS 30.0%
GACAAAGATGTTTATGTCAA+GGG + Chr2:28559320-28559339 MsG0280008280.01.T01:CDS 30.0%
GATACAGTTTCTTTAACTGA+AGG + Chr2:28555999-28556018 MsG0280008280.01.T01:CDS 30.0%
GATTATGTTGTGGAAGAAAT+AGG + Chr2:28556287-28556306 MsG0280008280.01.T01:CDS 30.0%
GATTTGACAAGAGAAACATT+AGG + Chr2:28559213-28559232 MsG0280008280.01.T01:CDS 30.0%
GCATTTCTTAAAGAAGAAGA+TGG - Chr2:28555405-28555424 None:intergenic 30.0%
GTTAGTGATTATGTTGCATT+AGG + Chr2:28556182-28556201 MsG0280008280.01.T01:CDS 30.0%
TCAACTTTAACACTCAAAAG+TGG - Chr2:28555651-28555670 None:intergenic 30.0%
TCATAACTCTACTAACAGAA+GGG - Chr2:28555707-28555726 None:intergenic 30.0%
TGACAAAGATGTTTATGTCA+AGG + Chr2:28559319-28559338 MsG0280008280.01.T01:CDS 30.0%
TGGAAGTTTGAATGAAAAAG+AGG + Chr2:28556259-28556278 MsG0280008280.01.T01:CDS 30.0%
TGGTAAAGAGGATAGAAAAT+GGG + Chr2:28559539-28559558 MsG0280008280.01.T01:CDS 30.0%
TTCTTGAGTTCTTATGGTTA+TGG + Chr2:28555834-28555853 MsG0280008280.01.T01:CDS 30.0%
TTGGAATTGGATTCTCTTAA+GGG + Chr2:28558358-28558377 MsG0280008280.01.T01:CDS 30.0%
! ACTCATTTTGTGAAGTTTCA+TGG + Chr2:28556083-28556102 MsG0280008280.01.T01:CDS 30.0%
! AGCAAGCATTTTCCTTAAAA+GGG - Chr2:28558803-28558822 None:intergenic 30.0%
! AGTTGAAATGTTTTCTCATG+TGG + Chr2:28558666-28558685 MsG0280008280.01.T01:CDS 30.0%
! ATTGCAAAGTTTGGAACTTT+AGG + Chr2:28558835-28558854 MsG0280008280.01.T01:CDS 30.0%
! CATAGACTAAAGTACCAAAA+AGG - Chr2:28556534-28556553 None:intergenic 30.0%
! GAATTTGAGATTGCAAAGTT+TGG + Chr2:28558826-28558845 MsG0280008280.01.T01:CDS 30.0%
! GGTTGATTCAAAATCATCAA+AGG + Chr2:28558555-28558574 MsG0280008280.01.T01:CDS 30.0%
! TCATCAAAATCACCTTGTTT+AGG + Chr2:28558994-28559013 MsG0280008280.01.T01:CDS 30.0%
! TTCACATGATGTTTTGTACA+AGG + Chr2:28557167-28557186 MsG0280008280.01.T01:intron 30.0%
!! AAAGTTTTTCAGTAACAAGG+AGG + Chr2:28557544-28557563 MsG0280008280.01.T01:CDS 30.0%
!! ATTGATCATATCACTGACTT+TGG + Chr2:28559622-28559641 MsG0280008280.01.T01:exon 30.0%
!! TACCAACTTTTGAGAATCAA+TGG + Chr2:28556402-28556421 MsG0280008280.01.T01:CDS 30.0%
!! TATAAGAGTGTTGAAAAGGA+AGG + Chr2:28556160-28556179 MsG0280008280.01.T01:CDS 30.0%
!!! CCTTTATTTTCTTCAATCCT+TGG - Chr2:28559066-28559085 None:intergenic 30.0%
!!! GATTTTGATGATGATGAAGA+TGG - Chr2:28558985-28559004 None:intergenic 30.0%
!!! TGAGTTTTTTTCATCTCATC+AGG - Chr2:28556068-28556087 None:intergenic 30.0%
!!! TTGGTTGAAAATGCTGATTT+TGG + Chr2:28558772-28558791 MsG0280008280.01.T01:CDS 30.0%
AAACCAAGTAACAACAACCT+TGG + Chr2:28558339-28558358 MsG0280008280.01.T01:CDS 35.0%
AAAGGTGAAGTAGTAGTAGT+TGG - Chr2:28555513-28555532 None:intergenic 35.0%
AACTATGATTGTTGCTCCAA+TGG - Chr2:28558114-28558133 None:intergenic 35.0%
AAGATACTACTACCTTGGTT+TGG - Chr2:28558181-28558200 None:intergenic 35.0%
AAGGGTAAAAGAGTCATTTG+AGG + Chr2:28559338-28559357 MsG0280008280.01.T01:CDS 35.0%
AATTGTTGTCAATTGTCGCA+TGG - Chr2:28556738-28556757 None:intergenic 35.0%
ACAAACAACCTCAAAACCAT+TGG + Chr2:28558095-28558114 MsG0280008280.01.T01:CDS 35.0%
ACAAGTTTAGAGAGGGTTAA+TGG + Chr2:28559477-28559496 MsG0280008280.01.T01:CDS 35.0%
ACGCATTAATTAACCTAGAC+CGG - Chr2:28557803-28557822 None:intergenic 35.0%
AGAAGATGAAGACTATGATG+AGG + Chr2:28559167-28559186 MsG0280008280.01.T01:CDS 35.0%
AGGATAGAAAATGGGATAGT+GGG + Chr2:28559547-28559566 MsG0280008280.01.T01:CDS 35.0%
AGTAACAACAACCTTGGAAT+TGG + Chr2:28558345-28558364 MsG0280008280.01.T01:CDS 35.0%
ATAAGGGTAGATCTTTGCAT+TGG - Chr2:28558137-28558156 None:intergenic 35.0%
ATAAGGTTTGAGCTATAAGC+TGG - Chr2:28558250-28558269 None:intergenic 35.0%
ATAGCTCAAACCTTATACCT+CGG + Chr2:28558254-28558273 MsG0280008280.01.T01:CDS 35.0%
ATGAGTGCATTAGAAAGTGA+AGG - Chr2:28555555-28555574 None:intergenic 35.0%
ATTGGATTCTCTTAAGGGTA+TGG + Chr2:28558363-28558382 MsG0280008280.01.T01:CDS 35.0%
CAAAACAAAGTGAAGCAGAA+AGG - Chr2:28557113-28557132 None:intergenic 35.0%
CTCATAACTCTACTAACAGA+AGG - Chr2:28555708-28555727 None:intergenic 35.0%
CTGTCTTCGGTTAATCATTT+CGG + Chr2:28556648-28556667 MsG0280008280.01.T01:intron 35.0%
CTTAAGAGAATCCAATTCCA+AGG - Chr2:28558359-28558378 None:intergenic 35.0%
CTTGGAAATTCAACATTCAG+TGG + Chr2:28558418-28558437 MsG0280008280.01.T01:CDS 35.0%
CTTGGAATTGGATTCTCTTA+AGG + Chr2:28558357-28558376 MsG0280008280.01.T01:CDS 35.0%
GAAGATGAAGACTATGATGA+GGG + Chr2:28559168-28559187 MsG0280008280.01.T01:CDS 35.0%
GATAAGGTGATAGAGGAAAT+TGG + Chr2:28559393-28559412 MsG0280008280.01.T01:CDS 35.0%
GATTATGTTGCATTAGGTGT+TGG + Chr2:28556188-28556207 MsG0280008280.01.T01:CDS 35.0%
GGAACAAGAATGGTAAGATT+TGG + Chr2:28556330-28556349 MsG0280008280.01.T01:CDS 35.0%
GTGGTAAAGAGGATAGAAAA+TGG + Chr2:28559538-28559557 MsG0280008280.01.T01:CDS 35.0%
GTTGGAGCTATATTCTATGT+TGG + Chr2:28556206-28556225 MsG0280008280.01.T01:CDS 35.0%
GTTTGAGTCTTCATTCATCA+AGG + Chr2:28556462-28556481 MsG0280008280.01.T01:CDS 35.0%
TAGTTCAATAGCAGAAGCTT+TGG + Chr2:28558534-28558553 MsG0280008280.01.T01:CDS 35.0%
TCTATGTTGGAGATTTGAAG+TGG + Chr2:28556219-28556238 MsG0280008280.01.T01:CDS 35.0%
TGAATCCGTAATGTCTAAAG+AGG - Chr2:28557151-28557170 None:intergenic 35.0%
TGATAGAGGAAATTGGTGTA+GGG + Chr2:28559400-28559419 MsG0280008280.01.T01:CDS 35.0%
TGCAAGGAAATGATTCTGTT+GGG + Chr2:28558599-28558618 MsG0280008280.01.T01:CDS 35.0%
TGGTTCAGATCAGAAAAAGA+TGG + Chr2:28558438-28558457 MsG0280008280.01.T01:CDS 35.0%
TGTACAAGATAAGGTGATAG+AGG + Chr2:28559386-28559405 MsG0280008280.01.T01:CDS 35.0%
TGTCAATGAAGATCAGAAGA+AGG + Chr2:28558894-28558913 MsG0280008280.01.T01:CDS 35.0%
TTCTGTTGGGAAAAAAAGGT+TGG + Chr2:28558612-28558631 MsG0280008280.01.T01:CDS 35.0%
TTGAACTTAGCATCTGTCTT+CGG + Chr2:28556635-28556654 MsG0280008280.01.T01:intron 35.0%
TTGCAAGGAAATGATTCTGT+TGG + Chr2:28558598-28558617 MsG0280008280.01.T01:CDS 35.0%
! AGAGGTTGTTGATTATGTTG+TGG + Chr2:28556277-28556296 MsG0280008280.01.T01:CDS 35.0%
! AGTCATTTGAGGAGGTTTTT+GGG + Chr2:28559349-28559368 MsG0280008280.01.T01:CDS 35.0%
! ATTCCAAGGTTGTTGTTACT+TGG - Chr2:28558345-28558364 None:intergenic 35.0%
! CAGCAAGCATTTTCCTTAAA+AGG - Chr2:28558804-28558823 None:intergenic 35.0%
! CCAACAACCTTTTCAGAAAA+GGG - Chr2:28558721-28558740 None:intergenic 35.0%
! GAAAGTTGTTTGGTGAAGAA+GGG + Chr2:28556309-28556328 MsG0280008280.01.T01:CDS 35.0%
! TCTTTAACTGAAGGACTAGT+TGG + Chr2:28556008-28556027 MsG0280008280.01.T01:CDS 35.0%
!! AAAAGCATTGTTGGTTGGTA+AGG + Chr2:28557066-28557085 MsG0280008280.01.T01:intron 35.0%
!! AAAATGGGATAGTGGGTTTA+TGG + Chr2:28559554-28559573 MsG0280008280.01.T01:CDS 35.0%
!! AAATGGGATAGTGGGTTTAT+GGG + Chr2:28559555-28559574 MsG0280008280.01.T01:CDS 35.0%
!! ACTGTTGATTTGAGATCAAC+CGG + Chr2:28557781-28557800 MsG0280008280.01.T01:intron 35.0%
!! ATTTTGGTGACACCCTTTTA+AGG + Chr2:28558788-28558807 MsG0280008280.01.T01:CDS 35.0%
!! CACCATTGATTCTCAAAAGT+TGG - Chr2:28556407-28556426 None:intergenic 35.0%
!! CCTTTTCTGAAAAGGTTGTT+GGG + Chr2:28558719-28558738 MsG0280008280.01.T01:CDS 35.0%
!! GATATTGAACTTGGTGTATC+TGG - Chr2:28558205-28558224 None:intergenic 35.0%
!! TGGATAGTGGATGATAATGA+TGG + Chr2:28556239-28556258 MsG0280008280.01.T01:CDS 35.0%
!!! GTTCCACTTTTTGTTCAACT+GGG - Chr2:28558050-28558069 None:intergenic 35.0%
!!! TGTTCCACTTTTTGTTCAAC+TGG - Chr2:28558051-28558070 None:intergenic 35.0%
AACAGAAGGGTCATCAAGAA+TGG - Chr2:28555694-28555713 None:intergenic 40.0%
AGAAGAATCTGTTGCCTTCA+TGG + Chr2:28557642-28557661 MsG0280008280.01.T01:CDS 40.0%
AGCTCAAGCTCATCAAAGAA+GGG + Chr2:28555590-28555609 MsG0280008280.01.T01:CDS 40.0%
AGTAGAGTTATGAGAGAAGC+TGG + Chr2:28555714-28555733 MsG0280008280.01.T01:CDS 40.0%
AGTTTAGAGAGGGTTAATGG+TGG + Chr2:28559480-28559499 MsG0280008280.01.T01:CDS 40.0%
ATGAAGGCAACAGATTCTTC+TGG - Chr2:28557643-28557662 None:intergenic 40.0%
ATTCTGGACTATATGGCAGA+AGG + Chr2:28557036-28557055 MsG0280008280.01.T01:CDS 40.0%
ATTGACAATACTGCCACCAT+TGG - Chr2:28558881-28558900 None:intergenic 40.0%
CTAACTGTTTCACATTGCCA+TGG - Chr2:28558517-28558536 None:intergenic 40.0%
GAAGGATTCAGTGATGAAGT+TGG + Chr2:28558912-28558931 MsG0280008280.01.T01:CDS 40.0%
GAGGATAGAAAATGGGATAG+TGG + Chr2:28559546-28559565 MsG0280008280.01.T01:CDS 40.0%
GATGGTGATAACTCCAAAGT+TGG - Chr2:28558967-28558986 None:intergenic 40.0%
GCAATTGCAGAATCAGTGTT+TGG + Chr2:28558640-28558659 MsG0280008280.01.T01:CDS 40.0%
GCTAAGTATGTACGGTATTC+TGG + Chr2:28557020-28557039 MsG0280008280.01.T01:intron 40.0%
GGTAAAAGAGTCATTTGAGG+AGG + Chr2:28559341-28559360 MsG0280008280.01.T01:CDS 40.0%
GTAAAGACAACTCTTGCACT+TGG + Chr2:28558400-28558419 MsG0280008280.01.T01:CDS 40.0%
GTACGGTATTCTGGACTATA+TGG + Chr2:28557029-28557048 MsG0280008280.01.T01:CDS 40.0%
GTCATTTCCTTGTTCTTAGC+TGG - Chr2:28559303-28559322 None:intergenic 40.0%
GTGATAGAGGAAATTGGTGT+AGG + Chr2:28559399-28559418 MsG0280008280.01.T01:CDS 40.0%
GTTTAGAGAGGGTTAATGGT+GGG + Chr2:28559481-28559500 MsG0280008280.01.T01:CDS 40.0%
GTTTATACACTTTGTTGGGG+TGG + Chr2:28559519-28559538 MsG0280008280.01.T01:CDS 40.0%
GTTTGAGCTATAAGCTGGTT+TGG - Chr2:28558245-28558264 None:intergenic 40.0%
TCAAAGTCCAGCTAAGAACA+AGG + Chr2:28559293-28559312 MsG0280008280.01.T01:CDS 40.0%
TCAAGAGCTCTACATTGAAG+AGG - Chr2:28555459-28555478 None:intergenic 40.0%
TGACCCAGTTGAACAAAAAG+TGG + Chr2:28558044-28558063 MsG0280008280.01.T01:CDS 40.0%
TTGATTCCAGCATAGGAGAT+GGG - Chr2:28557526-28557545 None:intergenic 40.0%
TTTAGAGAGGGTTAATGGTG+GGG + Chr2:28559482-28559501 MsG0280008280.01.T01:CDS 40.0%
TTTGATTCCAGCATAGGAGA+TGG - Chr2:28557527-28557546 None:intergenic 40.0%
! ACTGACTTTGGTTAGTAGTG+GGG + Chr2:28559634-28559653 MsG0280008280.01.T01:three_prime_UTR 40.0%
! CATCAAAGGAATGTGCTACT+TGG + Chr2:28558569-28558588 MsG0280008280.01.T01:CDS 40.0%
! CCCAACAACCTTTTCAGAAA+AGG - Chr2:28558722-28558741 None:intergenic 40.0%
! GAGTCATTTGAGGAGGTTTT+TGG + Chr2:28559348-28559367 MsG0280008280.01.T01:CDS 40.0%
! GATTCTCTTAAGGGTATGGA+AGG + Chr2:28558367-28558386 MsG0280008280.01.T01:CDS 40.0%
! GGAAAGTTGTTTGGTGAAGA+AGG + Chr2:28556308-28556327 MsG0280008280.01.T01:CDS 40.0%
! GTTAATGGTGGGGGTAAAAA+TGG + Chr2:28559492-28559511 MsG0280008280.01.T01:CDS 40.0%
! TCAATCTTGAAGCACTCTCT+AGG + Chr2:28555312-28555331 MsG0280008280.01.T01:CDS 40.0%
! TGGAGATTTGAAGTGGATAG+TGG + Chr2:28556226-28556245 MsG0280008280.01.T01:CDS 40.0%
! TTTGAGGTTGTTTGTTCTGG+TGG - Chr2:28558090-28558109 None:intergenic 40.0%
!! AGAGACACCCTTTTCTGAAA+AGG + Chr2:28558711-28558730 MsG0280008280.01.T01:CDS 40.0%
!! CACTGACTTTGGTTAGTAGT+GGG + Chr2:28559633-28559652 MsG0280008280.01.T01:three_prime_UTR 40.0%
!! CATTGTTGGTTGGTAAGGTA+AGG + Chr2:28557071-28557090 MsG0280008280.01.T01:intron 40.0%
!! CCCTTTTCTGAAAAGGTTGT+TGG + Chr2:28558718-28558737 MsG0280008280.01.T01:CDS 40.0%
!! CTGTGAAAAGCATTGTTGGT+TGG + Chr2:28557061-28557080 MsG0280008280.01.T01:CDS 40.0%
!! TACCTTGGTTTGGCCAATAA+GGG - Chr2:28558171-28558190 None:intergenic 40.0%
!! TCACTGACTTTGGTTAGTAG+TGG + Chr2:28559632-28559651 MsG0280008280.01.T01:three_prime_UTR 40.0%
!! TTGTTGCTCCAATGGTTTTG+AGG - Chr2:28558106-28558125 None:intergenic 40.0%
!!! GCTACTTGGTTGTTTTTGCA+AGG + Chr2:28558583-28558602 MsG0280008280.01.T01:CDS 40.0%
!!! GGTTTTGAGGTTGTTTGTTC+TGG - Chr2:28558093-28558112 None:intergenic 40.0%
ACATGCTGTGGTTGAAGCAA+AGG - Chr2:28555531-28555550 None:intergenic 45.0%
ACTTTGTTGGGGTGGTAAAG+AGG + Chr2:28559527-28559546 MsG0280008280.01.T01:CDS 45.0%
CTATGAGACTGAAGCCATGA+AGG - Chr2:28557659-28557678 None:intergenic 45.0%
CTCAAGCTCATCAAAGAAGG+GGG + Chr2:28555592-28555611 MsG0280008280.01.T01:CDS 45.0%
CTGACTTTGGTTAGTAGTGG+GGG + Chr2:28559635-28559654 MsG0280008280.01.T01:three_prime_UTR 45.0%
CTGGCAAGATACTACTACCT+TGG - Chr2:28558186-28558205 None:intergenic 45.0%
CTTCAAGATTGAAGCAGCCT+CGG - Chr2:28555304-28555323 None:intergenic 45.0%
GAAAGTGAAGGAACATGCTG+TGG - Chr2:28555543-28555562 None:intergenic 45.0%
GAGCTCAAGCTCATCAAAGA+AGG + Chr2:28555589-28555608 MsG0280008280.01.T01:CDS 45.0%
GCTCAAGCTCATCAAAGAAG+GGG + Chr2:28555591-28555610 MsG0280008280.01.T01:CDS 45.0%
GGTGAAGAAGGGAACAAGAA+TGG + Chr2:28556320-28556339 MsG0280008280.01.T01:CDS 45.0%
TACCCTTATTGGCCAAACCA+AGG + Chr2:28558166-28558185 MsG0280008280.01.T01:CDS 45.0%
TCAAAACCCATCTCCTATGC+TGG + Chr2:28557517-28557536 MsG0280008280.01.T01:CDS 45.0%
TGTTGCAGGAGAATGTTCCA+TGG + Chr2:28558497-28558516 MsG0280008280.01.T01:CDS 45.0%
TTAGAGAGGGTTAATGGTGG+GGG + Chr2:28559483-28559502 MsG0280008280.01.T01:CDS 45.0%
! GAAGAGGTGTGATTTGTGCA+TGG - Chr2:28555356-28555375 None:intergenic 45.0%
! GATTTGAGATCAACCGGTCT+AGG + Chr2:28557787-28557806 MsG0280008280.01.T01:intron 45.0%
!! CTACCTTGGTTTGGCCAATA+AGG - Chr2:28558172-28558191 None:intergenic 45.0%
!! GGCACTGTGAAAAGCATTGT+TGG + Chr2:28557057-28557076 MsG0280008280.01.T01:CDS 45.0%
!! TAAATTATTTAAAAATGATT+CGG - Chr2:28557760-28557779 None:intergenic 5.0%
AGTGTAGCAGCAACGTGAAG+AGG - Chr2:28555372-28555391 None:intergenic 50.0%
CAAGCTGTTCCTGTTCCATC+TGG + Chr2:28556431-28556450 MsG0280008280.01.T01:CDS 50.0%
CTAGGCTTAGCACGTAGAAG+AGG + Chr2:28555330-28555349 MsG0280008280.01.T01:CDS 50.0%
CTCAAACCAAGTCCACCAGA+TGG - Chr2:28556449-28556468 None:intergenic 50.0%
GAGGAAATTGGTGTAGGGTG+TGG + Chr2:28559405-28559424 MsG0280008280.01.T01:CDS 50.0%
GGCAACAGATTCTTCTGGTC+TGG - Chr2:28557638-28557657 None:intergenic 50.0%
TGCATGATTGTTGTCCGCGA+CGG - Chr2:28558282-28558301 None:intergenic 50.0%
! ACTTTGGTTAGTAGTGGGGG+TGG + Chr2:28559638-28559657 MsG0280008280.01.T01:three_prime_UTR 50.0%
! TAGCACAGAAGCACGTCAGA+AGG + Chr2:28557676-28557695 MsG0280008280.01.T01:CDS 50.0%
CCAAGTCCACCAGATGGAAC+AGG - Chr2:28556443-28556462 None:intergenic 55.0%
CTTATACCTCGGTTCCGTCG+CGG + Chr2:28558265-28558284 MsG0280008280.01.T01:CDS 55.0%
GCAAGAGACACTAACAGCCG+AGG + Chr2:28555284-28555303 MsG0280008280.01.T01:CDS 55.0%
GCTGTTCCTGTTCCATCTGG+TGG + Chr2:28556434-28556453 MsG0280008280.01.T01:CDS 55.0%
GTGGTTGCTGCTGCTGTTGT+TGG - Chr2:28555632-28555651 None:intergenic 55.0%
!! CCTGTTCCATCTGGTGGACT+TGG + Chr2:28556440-28556459 MsG0280008280.01.T01:CDS 55.0%
CGCGACGGAACCGAGGTATA+AGG - Chr2:28558267-28558286 None:intergenic 60.0%
TGTTGTCCGCGACGGAACCG+AGG - Chr2:28558274-28558293 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 28555261 28559739 28555261 ID=MsG0280008280.01;Name=MsG0280008280.01
Chr2 mRNA 28555261 28559739 28555261 ID=MsG0280008280.01.T01;Parent=MsG0280008280.01;Name=MsG0280008280.01.T01;_AED=0.17;_eAED=0.19;_QI=0|0.33|0.5|1|1|1|4|113|1025
Chr2 exon 28555261 28556483 28555261 ID=MsG0280008280.01.T01:exon:19026;Parent=MsG0280008280.01.T01
Chr2 exon 28557026 28557082 28557026 ID=MsG0280008280.01.T01:exon:19027;Parent=MsG0280008280.01.T01
Chr2 exon 28557490 28557697 28557490 ID=MsG0280008280.01.T01:exon:19028;Parent=MsG0280008280.01.T01
Chr2 exon 28558037 28559739 28558037 ID=MsG0280008280.01.T01:exon:19029;Parent=MsG0280008280.01.T01
Chr2 CDS 28555261 28556483 28555261 ID=MsG0280008280.01.T01:cds;Parent=MsG0280008280.01.T01
Chr2 CDS 28557026 28557082 28557026 ID=MsG0280008280.01.T01:cds;Parent=MsG0280008280.01.T01
Chr2 CDS 28557490 28557697 28557490 ID=MsG0280008280.01.T01:cds;Parent=MsG0280008280.01.T01
Chr2 CDS 28558037 28559626 28558037 ID=MsG0280008280.01.T01:cds;Parent=MsG0280008280.01.T01
Chr2 three_prime_UTR 28559627 28559739 28559627 ID=MsG0280008280.01.T01:three_prime_utr;Parent=MsG0280008280.01.T01
Gene Sequence

>MsG0280008280.01.T01

ATGCGCTCAGGAGCTTATACATTGCAAGAGACACTAACAGCCGAGGCTGCTTCAATCTTGAAGCACTCTCTAGGCTTAGCACGTAGAAGAGGCCATGCACAAATCACACCTCTTCACGTTGCTGCTACACTTTTGAGTTTACCATCTTCTTCTTTAAGAAATGCATGTCTCAAATCTCAACAACAAAATAATCATCCTCTTCAATGTAGAGCTCTTGAACTTTGCTTCAATGTTGCTCTTAATAGACTTCCAACTACTACTACTTCACCTTTGCTTCAACCACAGCATGTTCCTTCACTTTCTAATGCACTCATTGCTGCTCTTAAAAGAGCTCAAGCTCATCAAAGAAGGGGGTGTATTGAGCAAAACCAACAACAGCAGCAGCAACCACTTTTGAGTGTTAAAGTTGAACTTGATCAGCTTATTCTCTCCATTCTTGATGACCCTTCTGTTAGTAGAGTTATGAGAGAAGCTGGTTTTTCTAGTCCTTCTGTTAAAAACAATTTGGAAAACTCTTCAACTTTAATTAACTCTTCTGTTTTTCATTCTTCACCTTCTCTTAGTCATAACCATTTCTTGAGTTCTTATGGTTATGGTTCTGTTCTCTTTTCTTCACAGAAGAAAGAACAAGTAGTATATCATCCTTTCTTAAAATTTTCTGAGTCTAATAAGGAAGATATTAATCTTGTTTTTGATGTTCTTTTGAGGAAGAAGAAGAAAAACACTGTGATAGTTGGTGATACAGTTTCTTTAACTGAAGGACTAGTTGGTGAAATAATGAAAAGATTTGAAAGAGGTGAAGTACCTGATGAGATGAAAAAAACTCATTTTGTGAAGTTTCATGGACTTAGTTCAGTTTCTTTGAAGTATATGAAAAAGGAAGAAGTTGAAATGAATGTTATAAGAGTGTTGAAAAGGAAGGTTAGTGATTATGTTGCATTAGGTGTTGGAGCTATATTCTATGTTGGAGATTTGAAGTGGATAGTGGATGATAATGATGGAAGTTTGAATGAAAAAGAGGTTGTTGATTATGTTGTGGAAGAAATAGGAAAGTTGTTTGGTGAAGAAGGGAACAAGAATGGTAAGATTTGGCTTGTTGCAACAGCTAGTTATCAAAGTTACATGAGGTGTCAAATGAGAGTACCAACTTTTGAGAATCAATGGTGTCTTCAAGCTGTTCCTGTTCCATCTGGTGGACTTGGTTTGAGTCTTCATTCATCAAGTATGTACGGTATTCTGGACTATATGGCAGAAGGCACTGTGAAAAGCATTGTTGGTTGTGTGCATGATTCAAAAATGAGCATCTCTCAAAACCCATCTCCTATGCTGGAATCAAAGTTTTTCAGTAACAAGGAGGAACATGAGAAGCTTAATTGTTGTGAAGAGTGTCTCTCCAATTATGAAAAAGAAGCTCAATTGTTCAAACCAGACCAGAAGAATCTGTTGCCTTCATGGCTTCAGTCTCATAGCACAGAAGCACGTCAGAAGGATGAATTGACCCAGTTGAACAAAAAGTGGAACAGATTGTGTCAATGTCTCCACCAGAACAAACAACCTCAAAACCATTGGAGCAACAATCATAGTTCCAATGCAAAGATCTACCCTTATAATTCATCATACCCTTATTGGCCAAACCAAGGTAGTAGTATCTTGCCAGATACACCAAGTTCAATATCTTTTGTTGATTCTGCAACCAAACCAGCTTATAGCTCAAACCTTATACCTCGGTTCCGTCGCGGACAACAATCATGCACCATTGAGTTCAACTTCAATGATGAAAAAGCTCAGAAAAACCAAGTAACAACAACCTTGGAATTGGATTCTCTTAAGGGTATGGAAGGTACTAAAGAAGTAAAGACAACTCTTGCACTTGGAAATTCAACATTCAGTGGTTCAGATCAGAAAAAGATGGAAAATTTAACACTGAAAAGAGATCATATATATAAAGTGTTGCAGGAGAATGTTCCATGGCAATGTGAAACAGTTAGTTCAATAGCAGAAGCTTTGGTTGATTCAAAATCATCAAAGGAATGTGCTACTTGGTTGTTTTTGCAAGGAAATGATTCTGTTGGGAAAAAAAGGTTGGCACTTGCAATTGCAGAATCAGTGTTTGGATCAGTTGAAATGTTTTCTCATGTGGACATGATGAAGAGAGAGATTTCAGAGACACCCTTTTCTGAAAAGGTTGTTGGGCCATTGAAAAACAATGAAAAGTTTGTTGTTTTGGTTGAAAATGCTGATTTTGGTGACACCCTTTTAAGGAAAATGCTTGCTGATGAATTTGAGATTGCAAAGTTTGGAACTTTAGGCCAAAAAATATTCATATTGTCCAATGGTGGCAGTATTGTCAATGAAGATCAGAAGAAGGATTCAGTGATGAAGTTGGTTTTGAAGATTAGTGAAACTGAGAAAAAACCAACTTTGGAGTTATCACCATCTTCATCATCATCAAAATCACCTTGTTTAGGTAATAAAAGAAGTGCTGAACTTGACTTGTTTAGCAAAATAAAAACTCCAAGGATTGAAGAAAATAAAGGGAACAAAAAGAGAGAATTTTCATTTTCAAGACAATCAAGCTTCAACAACACTCTTGATTTGAATATGAAAGCTGATGAAGAAGAAGATGAAGACTATGATGAGGGAGAAAATAGTCCAATTTCAAGTGATTTGACAAGAGAAACATTAGGAGAACATTTGATCTCAAATGAGTCCCTAGACTCAATTGAGAATTTGTTTGAGTTCAATCAAAGTCCAGCTAAGAACAAGGAAATGACAAAGATGTTTATGTCAAGGGTAAAAGAGTCATTTGAGGAGGTTTTTGGGAATGTAAAATTTAGTGTACAAGATAAGGTGATAGAGGAAATTGGTGTAGGGTGTGGTTCTTTTACTAACAACATGTTTGAGAAATGGCTAAAAGGCATTTTTCAAACAAGTTTAGAGAGGGTTAATGGTGGGGGTAAAAATGGTATAGTTTATACACTTTGTTGGGGTGGTAAAGAGGATAGAAAATGGGATAGTGGGTTTATGGGTTCATGTTTGCCTAAAAATATCCAAATTGTTAACTACTTAATGGATTGA

Protein sequence

>MsG0280008280.01.T01

MRSGAYTLQETLTAEAASILKHSLGLARRRGHAQITPLHVAATLLSLPSSSLRNACLKSQQQNNHPLQCRALELCFNVALNRLPTTTTSPLLQPQHVPSLSNALIAALKRAQAHQRRGCIEQNQQQQQQPLLSVKVELDQLILSILDDPSVSRVMREAGFSSPSVKNNLENSSTLINSSVFHSSPSLSHNHFLSSYGYGSVLFSSQKKEQVVYHPFLKFSESNKEDINLVFDVLLRKKKKNTVIVGDTVSLTEGLVGEIMKRFERGEVPDEMKKTHFVKFHGLSSVSLKYMKKEEVEMNVIRVLKRKVSDYVALGVGAIFYVGDLKWIVDDNDGSLNEKEVVDYVVEEIGKLFGEEGNKNGKIWLVATASYQSYMRCQMRVPTFENQWCLQAVPVPSGGLGLSLHSSSMYGILDYMAEGTVKSIVGCVHDSKMSISQNPSPMLESKFFSNKEEHEKLNCCEECLSNYEKEAQLFKPDQKNLLPSWLQSHSTEARQKDELTQLNKKWNRLCQCLHQNKQPQNHWSNNHSSNAKIYPYNSSYPYWPNQGSSILPDTPSSISFVDSATKPAYSSNLIPRFRRGQQSCTIEFNFNDEKAQKNQVTTTLELDSLKGMEGTKEVKTTLALGNSTFSGSDQKKMENLTLKRDHIYKVLQENVPWQCETVSSIAEALVDSKSSKECATWLFLQGNDSVGKKRLALAIAESVFGSVEMFSHVDMMKREISETPFSEKVVGPLKNNEKFVVLVENADFGDTLLRKMLADEFEIAKFGTLGQKIFILSNGGSIVNEDQKKDSVMKLVLKISETEKKPTLELSPSSSSSKSPCLGNKRSAELDLFSKIKTPRIEENKGNKKREFSFSRQSSFNNTLDLNMKADEEEDEDYDEGENSPISSDLTRETLGEHLISNESLDSIENLFEFNQSPAKNKEMTKMFMSRVKESFEEVFGNVKFSVQDKVIEEIGVGCGSFTNNMFEKWLKGIFQTSLERVNGGGKNGIVYTLCWGGKEDRKWDSGFMGSCLPKNIQIVNYLMD*