AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035738.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035738.01.T01 MTR_6g087070 98.611 144 2 0 3 146 281 424 4.32e-99 291
MsG0680035738.01.T01 MTR_8g102930 60.274 146 54 4 3 146 281 424 4.46e-46 155
MsG0680035738.01.T02 MTR_6g087070 98.611 144 2 0 3 146 281 424 4.32e-99 291
MsG0680035738.01.T02 MTR_8g102930 60.274 146 54 4 3 146 281 424 4.46e-46 155
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035738.01.T01 AT4G28880 38.732 142 69 6 3 137 281 411 8.41e-19 81.6
MsG0680035738.01.T01 AT4G28880 38.732 142 69 6 3 137 281 411 8.41e-19 81.6
MsG0680035738.01.T01 AT4G28880 38.732 142 69 6 3 137 281 411 8.41e-19 81.6
MsG0680035738.01.T01 AT4G28880 38.732 142 69 6 3 137 281 411 8.41e-19 81.6
MsG0680035738.01.T01 AT4G28860 38.298 141 70 7 3 137 281 410 7.04e-15 70.9
MsG0680035738.01.T01 AT4G28860 46.988 83 37 3 3 80 281 361 1.30e-14 69.7
MsG0680035738.01.T02 AT4G28880 38.732 142 69 6 3 137 281 411 8.41e-19 81.6
MsG0680035738.01.T02 AT4G28880 38.732 142 69 6 3 137 281 411 8.41e-19 81.6
MsG0680035738.01.T02 AT4G28880 38.732 142 69 6 3 137 281 411 8.41e-19 81.6
MsG0680035738.01.T02 AT4G28880 38.732 142 69 6 3 137 281 411 8.41e-19 81.6
MsG0680035738.01.T02 AT4G28860 38.298 141 70 7 3 137 281 410 7.04e-15 70.9
MsG0680035738.01.T02 AT4G28860 46.988 83 37 3 3 80 281 361 1.30e-14 69.7

Find 50 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACATGGAGCTGCATATTA+TGG 0.224614 6:+111414216 MsG0680035738.01.T02:three_prime_UTR
CCTCTTAATATTTAATCTTT+AGG 0.233000 6:+111414930 MsG0680035738.01.T02:three_prime_UTR
GGTTTAAATCTTGTTATTAA+AGG 0.235482 6:+111414951 MsG0680035738.01.T02:three_prime_UTR
TCAAACATTTCTTGATTTGT+AGG 0.251457 6:+111415080 MsG0680035738.01.T02:three_prime_UTR
TGTGAAGAAACCATTATTTC+GGG 0.261325 6:-111414820 None:intergenic
TTAATTTGTATTGTCATTCT+TGG 0.284570 6:+111415127 MsG0680035738.01.T02:three_prime_UTR
TGAATCAGATGCAAAAGTTT+TGG 0.301195 6:+111414787 MsG0680035738.01.T02:three_prime_UTR
ACAAGCTGCTTACCATTTCA+TGG 0.306787 6:-111414731 None:intergenic
TTGTGAAGAAACCATTATTT+CGG 0.309293 6:-111414821 None:intergenic
CTATGTCACCACTTATTATA+CGG 0.311381 6:-111414518 None:intergenic
CAATCATTTGCAGTCACCTT+AGG 0.337693 6:-111414344 None:intergenic
CAGGATGACTCCCGAAATAA+TGG 0.345217 6:+111414810 MsG0680035738.01.T02:three_prime_UTR
TAATAAGTGGTGACATAGTT+TGG 0.346853 6:+111414523 MsG0680035738.01.T02:three_prime_UTR
ACAAACATCGAAGGTAGTTT+TGG 0.351096 6:+111414840 MsG0680035738.01.T02:three_prime_UTR
TTAAACCACAATCGAATGTT+TGG 0.363137 6:-111414882 None:intergenic
TTGATAATATTACAAATTGC+AGG 0.383912 6:+111414556 MsG0680035738.01.T02:three_prime_UTR
TGAATCATCAATCCATGAAA+TGG 0.386645 6:+111414719 MsG0680035738.01.T02:three_prime_UTR
TAATTTGTATTGTCATTCTT+GGG 0.389870 6:+111415128 MsG0680035738.01.T02:three_prime_UTR
GGAAAATGAGCAACATAAAC+TGG 0.398270 6:-111414320 None:intergenic
AACATGGAGCTGCATATTAT+GGG 0.410482 6:+111414217 MsG0680035738.01.T02:three_prime_UTR
AATGACAATACAAATTAATC+TGG 0.413475 6:-111415122 None:intergenic
AATCATTTGCAGTCACCTTA+GGG 0.419276 6:-111414343 None:intergenic
CCTAAAGATTAAATATTAAG+AGG 0.429391 6:-111414930 None:intergenic
GGTGACTGCAAATGATTGTT+TGG 0.452773 6:+111414349 MsG0680035738.01.T02:three_prime_UTR
CACAAATCACAAGTGGCAAG+AGG 0.475403 6:-111414495 None:intergenic
AATCTGATCAAGAAGATTCC+CGG 0.476796 6:+111414184 MsG0680035738.01.T02:three_prime_UTR
CTCCATGTTTGTATGCATGC+CGG 0.491707 6:-111414203 None:intergenic
TAGCACATTTGTAGTCTCCA+TGG 0.492735 6:-111414262 None:intergenic
TCCATGTTTGTATGCATGCC+GGG 0.510414 6:-111414202 None:intergenic
CAAGTGGCAAGAGGGGCAAA+TGG 0.521743 6:-111414486 None:intergenic
CGCTTCCAAACATTCGATTG+TGG 0.529954 6:+111414877 MsG0680035738.01.T02:three_prime_UTR
TGAAATGGTAAGCAGCTTGT+CGG 0.533193 6:+111414734 MsG0680035738.01.T02:three_prime_UTR
AAGTGCACTGTATCTTATGC+AGG 0.540684 6:-111414668 None:intergenic
AAATACAGACTGCACAGGCT+TGG 0.551160 6:+111414376 MsG0680035738.01.T02:three_prime_UTR
AGCACATTTGTAGTCTCCAT+GGG 0.562892 6:-111414261 None:intergenic
ACAAATCACAAGTGGCAAGA+GGG 0.578978 6:-111414494 None:intergenic
TCATTTGCAGTCACCTTAGG+GGG 0.581707 6:-111414341 None:intergenic
GTATAAAATACAGACTGCAC+AGG 0.585229 6:+111414371 MsG0680035738.01.T02:three_prime_UTR
CAAATCACAAGTGGCAAGAG+GGG 0.585419 6:-111414493 None:intergenic
GATTTGTGCCGTATAATAAG+TGG 0.604509 6:+111414510 MsG0680035738.01.T02:three_prime_UTR
GAGACTACAAATGTGCTACA+AGG 0.614976 6:+111414267 MsG0680035738.01.T02:three_prime_UTR
TCCCGGCATGCATACAAACA+TGG 0.615869 6:+111414201 MsG0680035738.01.T02:three_prime_UTR
TGTGGTTTAACGTTAGTCTG+AGG 0.616006 6:+111414895 MsG0680035738.01.T02:three_prime_UTR
TGTAAAATTAATGTGTGATG+TGG 0.619488 6:+111414461 MsG0680035738.01.T02:three_prime_UTR
ATCATTTGCAGTCACCTTAG+GGG 0.619886 6:-111414342 None:intergenic
GGTTTCTTCACAAACATCGA+AGG 0.626550 6:+111414831 MsG0680035738.01.T02:three_prime_UTR
GCTTGCAAGTGATTTGCCCA+TGG 0.628954 6:+111414245 MsG0680035738.01.T02:three_prime_UTR
GGTCATACATTCTGAAAACA+AGG 0.630360 6:-111414760 None:intergenic
TATACGGCACAAATCACAAG+TGG 0.651275 6:-111414502 None:intergenic
ACATGGAGCTGCATATTATG+GGG 0.661231 6:+111414218 MsG0680035738.01.T02:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTATTTTTGTAGATTTT+TGG + Chr6:111413871-111413890 MsG0680035738.01.T02:intron 10.0%
!! AATTTGATTATGTATTTGAT+TGG + Chr6:111413306-111413325 MsG0680035738.01.T02:CDS 15.0%
!! ATAAACAACAGATTAAAATT+TGG - Chr6:111413855-111413874 None:intergenic 15.0%
!!! ATCAAAAACAATTCTTATTT+CGG - Chr6:111415658-111415677 None:intergenic 15.0%
!!! TTGTAGATAATTTTCAAATA+TGG + Chr6:111414407-111414426 MsG0680035738.01.T02:three_prime_UTR 15.0%
!! AATGACAATACAAATTAATC+TGG - Chr6:111415125-111415144 None:intergenic 20.0%
!! CCTAAAGATTAAATATTAAG+AGG - Chr6:111414933-111414952 None:intergenic 20.0%
!! CCTCTTAATATTTAATCTTT+AGG + Chr6:111414930-111414949 MsG0680035738.01.T02:three_prime_UTR 20.0%
!! TTCATTATTACTAATTGACA+AGG + Chr6:111413570-111413589 MsG0680035738.01.T02:intron 20.0%
!!! AATAAATATTTTCAGATGCA+TGG - Chr6:111413427-111413446 None:intergenic 20.0%
!!! ATAAATATTTTCAGATGCAT+GGG - Chr6:111413426-111413445 None:intergenic 20.0%
!!! ATTTCCTTTTTTAACCTATA+TGG + Chr6:111415376-111415395 MsG0680035738.01.T02:three_prime_UTR 20.0%
!!! GGTTTAAATCTTGTTATTAA+AGG + Chr6:111414951-111414970 MsG0680035738.01.T02:three_prime_UTR 20.0%
!!! TAATTTGTATTGTCATTCTT+GGG + Chr6:111415128-111415147 MsG0680035738.01.T02:three_prime_UTR 20.0%
!!! TATTAAAGGAACATTTTCAA+AGG + Chr6:111414965-111414984 MsG0680035738.01.T02:three_prime_UTR 20.0%
!!! TTAATTTGTATTGTCATTCT+TGG + Chr6:111415127-111415146 MsG0680035738.01.T02:three_prime_UTR 20.0%
!!! TTGATAATATTACAAATTGC+AGG + Chr6:111414556-111414575 MsG0680035738.01.T02:three_prime_UTR 20.0%
!!! TTTCCTTTTTTAACCTATAT+GGG + Chr6:111415377-111415396 MsG0680035738.01.T02:three_prime_UTR 20.0%
!!! TTTTCTAATCTATATAGCAA+TGG + Chr6:111415292-111415311 MsG0680035738.01.T02:three_prime_UTR 20.0%
!!! TTTTTGATCATAATGTTTGT+TGG + Chr6:111415670-111415689 MsG0680035738.01.T02:three_prime_UTR 20.0%
! CCAAAAAGAAAAAATGTAGA+TGG - Chr6:111415353-111415372 None:intergenic 25.0%
! CTAAATCATATCTCTTCATA+CGG + Chr6:111415449-111415468 MsG0680035738.01.T02:three_prime_UTR 25.0%
! TAAATCATATCTCTTCATAC+GGG + Chr6:111415450-111415469 MsG0680035738.01.T02:three_prime_UTR 25.0%
! TAACCCATATAGGTTAAAAA+AGG - Chr6:111415383-111415402 None:intergenic 25.0%
! TGCTAAATAAATGCTGAATA+TGG + Chr6:111414053-111414072 MsG0680035738.01.T02:intron 25.0%
! TGTAAAATTAATGTGTGATG+TGG + Chr6:111414461-111414480 MsG0680035738.01.T02:three_prime_UTR 25.0%
! TTATATTGTGCTATGTTTCT+AGG + Chr6:111414157-111414176 MsG0680035738.01.T02:intron 25.0%
! TTATGCAGAACAACAAAATA+TGG - Chr6:111413538-111413557 None:intergenic 25.0%
! TTGAAAAGGATAAAGAATTC+AGG + Chr6:111415521-111415540 MsG0680035738.01.T02:three_prime_UTR 25.0%
! TTGTGAAGAAACCATTATTT+CGG - Chr6:111414824-111414843 None:intergenic 25.0%
! TTTCATTCTTTAACCCATAT+AGG - Chr6:111415393-111415412 None:intergenic 25.0%
!! GAATTCTTTATCCTTTTCAA+TGG - Chr6:111415521-111415540 None:intergenic 25.0%
!!! AAAAAAGTGAGTTTTAATGG+TGG + Chr6:111415545-111415564 MsG0680035738.01.T02:three_prime_UTR 25.0%
!!! ATTTGCAATTAGCTTTACAT+AGG - Chr6:111415223-111415242 None:intergenic 25.0%
!!! CCATCTACATTTTTTCTTTT+TGG + Chr6:111415350-111415369 MsG0680035738.01.T02:three_prime_UTR 25.0%
!!! GGAAAAAAAGTGAGTTTTAA+TGG + Chr6:111415542-111415561 MsG0680035738.01.T02:three_prime_UTR 25.0%
!!! TCAAACATTTCTTGATTTGT+AGG + Chr6:111415080-111415099 MsG0680035738.01.T02:three_prime_UTR 25.0%
!!! TCTACATTTTTTCTTTTTGG+AGG + Chr6:111415353-111415372 MsG0680035738.01.T02:three_prime_UTR 25.0%
!!! TTTACATTTGTTTCTTTTGC+AGG + Chr6:111415261-111415280 MsG0680035738.01.T02:intron 25.0%
AAATCATATCTCTTCATACG+GGG + Chr6:111415451-111415470 MsG0680035738.01.T02:three_prime_UTR 30.0%
AACTAAAATCTCAATGTCAC+AGG - Chr6:111415720-111415739 None:intergenic 30.0%
AAGAAACATACACTTCAACT+TGG - Chr6:111415817-111415836 None:intergenic 30.0%
AAGTTCCAGTTTAAATCATC+AGG + Chr6:111413662-111413681 MsG0680035738.01.T02:CDS 30.0%
ACAAGGATTAATGCTTATAC+AGG + Chr6:111413587-111413606 MsG0680035738.01.T02:intron 30.0%
AGGATCATATGTATGAAGAA+GGG - Chr6:111415622-111415641 None:intergenic 30.0%
ATGTAGAGTAAATGACATCT+AGG + Chr6:111415414-111415433 MsG0680035738.01.T02:three_prime_UTR 30.0%
ATTTGTGTGTGTGTAGATTT+GGG + Chr6:111413391-111413410 MsG0680035738.01.T02:intron 30.0%
CAAGGATTAATGCTTATACA+GGG + Chr6:111413588-111413607 MsG0680035738.01.T02:intron 30.0%
CACACACACAAATATACTTA+CGG - Chr6:111413384-111413403 None:intergenic 30.0%
CATGAAAGATGGAAATATGA+GGG + Chr6:111415572-111415591 MsG0680035738.01.T02:three_prime_UTR 30.0%
CTATGTCACCACTTATTATA+CGG - Chr6:111414521-111414540 None:intergenic 30.0%
GAAACATAGCACAATATAAG+CGG - Chr6:111414156-111414175 None:intergenic 30.0%
GCAAGACTATTGCATTTATA+TGG + Chr6:111415324-111415343 MsG0680035738.01.T02:three_prime_UTR 30.0%
TAATAAGTGGTGACATAGTT+TGG + Chr6:111414523-111414542 MsG0680035738.01.T02:three_prime_UTR 30.0%
TATTTGTGTGTGTGTAGATT+TGG + Chr6:111413390-111413409 MsG0680035738.01.T02:intron 30.0%
TCATGAAAGATGGAAATATG+AGG + Chr6:111415571-111415590 MsG0680035738.01.T02:three_prime_UTR 30.0%
TGAATCATCAATCCATGAAA+TGG + Chr6:111414719-111414738 MsG0680035738.01.T02:three_prime_UTR 30.0%
TGAGTACTATTGTCTATGTA+TGG + Chr6:111414110-111414129 MsG0680035738.01.T02:intron 30.0%
TGTGAAGAAACCATTATTTC+GGG - Chr6:111414823-111414842 None:intergenic 30.0%
TTAAACCACAATCGAATGTT+TGG - Chr6:111414885-111414904 None:intergenic 30.0%
! ATATTGATAACCAACAAGGT+TGG + Chr6:111413501-111413520 MsG0680035738.01.T02:intron 30.0%
! ATGGATATTGATAACCAACA+AGG + Chr6:111413497-111413516 MsG0680035738.01.T02:CDS 30.0%
! ATTTCTTAGCTCATCTTTTG+AGG + Chr6:111414297-111414316 MsG0680035738.01.T02:three_prime_UTR 30.0%
! TGAATCAGATGCAAAAGTTT+TGG + Chr6:111414787-111414806 MsG0680035738.01.T02:three_prime_UTR 30.0%
! TGCTGAATATGGTAATTTTC+TGG + Chr6:111414064-111414083 MsG0680035738.01.T02:intron 30.0%
! TGTTGGTTATCAATATCCAT+GGG - Chr6:111413497-111413516 None:intergenic 30.0%
! TTCACAAGTTTGAAACACAA+AGG - Chr6:111413813-111413832 None:intergenic 30.0%
! TTGTTGGTTATCAATATCCA+TGG - Chr6:111413498-111413517 None:intergenic 30.0%
! TTTATCCTTTTCAATGGATG+TGG - Chr6:111415515-111415534 None:intergenic 30.0%
!! TTATTTTGTCATATTGCAGC+CGG + Chr6:111413442-111413461 MsG0680035738.01.T02:intron 30.0%
!!! GTTTTATTTCAATGTGACCA+AGG + Chr6:111415168-111415187 MsG0680035738.01.T02:three_prime_UTR 30.0%
AAACATGGAGCTGCATATTA+TGG + Chr6:111414216-111414235 MsG0680035738.01.T02:three_prime_UTR 35.0%
AAATTGGTCCTTCAAGTAGT+CGG + Chr6:111414007-111414026 MsG0680035738.01.T02:CDS 35.0%
AACATGGAGCTGCATATTAT+GGG + Chr6:111414217-111414236 MsG0680035738.01.T02:three_prime_UTR 35.0%
AATCATATCTCTTCATACGG+GGG + Chr6:111415452-111415471 MsG0680035738.01.T02:three_prime_UTR 35.0%
AATCATTTGCAGTCACCTTA+GGG - Chr6:111414346-111414365 None:intergenic 35.0%
AATCTGATCAAGAAGATTCC+CGG + Chr6:111414184-111414203 MsG0680035738.01.T02:three_prime_UTR 35.0%
AATGTCCACATCCATTGAAA+AGG + Chr6:111415507-111415526 MsG0680035738.01.T02:three_prime_UTR 35.0%
AGAATGTAAGTCGTCTTACA+TGG + Chr6:111413720-111413739 MsG0680035738.01.T02:intron 35.0%
ATCATCAGGCGGTAAAAATT+TGG + Chr6:111413676-111413695 MsG0680035738.01.T02:CDS 35.0%
GAGGATCATATGTATGAAGA+AGG - Chr6:111415623-111415642 None:intergenic 35.0%
GATTTGTGCCGTATAATAAG+TGG + Chr6:111414510-111414529 MsG0680035738.01.T02:three_prime_UTR 35.0%
GGAAAATGAGCAACATAAAC+TGG - Chr6:111414323-111414342 None:intergenic 35.0%
GGATCATATGTATGAAGAAG+GGG - Chr6:111415621-111415640 None:intergenic 35.0%
GTATAAAATACAGACTGCAC+AGG + Chr6:111414371-111414390 MsG0680035738.01.T02:three_prime_UTR 35.0%
TAGAGTAAATGACATCTAGG+TGG + Chr6:111415417-111415436 MsG0680035738.01.T02:three_prime_UTR 35.0%
TTCCAGTTTAAATCATCAGG+CGG + Chr6:111413665-111413684 MsG0680035738.01.T02:CDS 35.0%
! AATTCTTATTTCGGTCCTCA+AGG - Chr6:111415649-111415668 None:intergenic 35.0%
! ACAAACATCGAAGGTAGTTT+TGG + Chr6:111414840-111414859 MsG0680035738.01.T02:three_prime_UTR 35.0%
! ATTCTTATTTCGGTCCTCAA+GGG - Chr6:111415648-111415667 None:intergenic 35.0%
! CAAAAGAGTGTGAAGTAGAA+GGG - Chr6:111413909-111413928 None:intergenic 35.0%
! CTTTTGCATCTGATTCATTG+TGG - Chr6:111414784-111414803 None:intergenic 35.0%
! GGTCATACATTCTGAAAACA+AGG - Chr6:111414763-111414782 None:intergenic 35.0%
! TCAAAAGAGTGTGAAGTAGA+AGG - Chr6:111413910-111413929 None:intergenic 35.0%
!!! ACTCTTTTGAAGCATCAAGA+AGG + Chr6:111413920-111413939 MsG0680035738.01.T02:CDS 35.0%
AAGCTGCAAACCATAGACAT+GGG + Chr6:111413971-111413990 MsG0680035738.01.T02:CDS 40.0%
AAGTGCACTGTATCTTATGC+AGG - Chr6:111414671-111414690 None:intergenic 40.0%
ACAAATCACAAGTGGCAAGA+GGG - Chr6:111414497-111414516 None:intergenic 40.0%
ACAAGCTGCTTACCATTTCA+TGG - Chr6:111414734-111414753 None:intergenic 40.0%
ACATAGCACAATATAAGCGG+TGG - Chr6:111414153-111414172 None:intergenic 40.0%
ACATGGAGCTGCATATTATG+GGG + Chr6:111414218-111414237 MsG0680035738.01.T02:three_prime_UTR 40.0%
ACATTCATCCGACTACTTGA+AGG - Chr6:111414018-111414037 None:intergenic 40.0%
AGCACATTTGTAGTCTCCAT+GGG - Chr6:111414264-111414283 None:intergenic 40.0%
ATCATTTGCAGTCACCTTAG+GGG - Chr6:111414345-111414364 None:intergenic 40.0%
ATTTCAATGTGACCAAGGTG+TGG + Chr6:111415173-111415192 MsG0680035738.01.T02:intron 40.0%
CAATCATTTGCAGTCACCTT+AGG - Chr6:111414347-111414366 None:intergenic 40.0%
CCTAGTATTATCCGCATTGA+CGG - Chr6:111415746-111415765 None:intergenic 40.0%
GAACTTAACACCAGAAGAAG+TGG - Chr6:111413648-111413667 None:intergenic 40.0%
GAGACTACAAATGTGCTACA+AGG + Chr6:111414267-111414286 MsG0680035738.01.T02:three_prime_UTR 40.0%
GGTGACTGCAAATGATTGTT+TGG + Chr6:111414349-111414368 MsG0680035738.01.T02:three_prime_UTR 40.0%
GGTTTCTTCACAAACATCGA+AGG + Chr6:111414831-111414850 MsG0680035738.01.T02:three_prime_UTR 40.0%
TACCGCCTGATGATTTAAAC+TGG - Chr6:111413670-111413689 None:intergenic 40.0%
TAGCACATTTGTAGTCTCCA+TGG - Chr6:111414265-111414284 None:intergenic 40.0%
TATACGGCACAAATCACAAG+TGG - Chr6:111414505-111414524 None:intergenic 40.0%
TCTGCACAGATTCAGTAGAA+AGG - Chr6:111413763-111413782 None:intergenic 40.0%
TGAAATGGTAAGCAGCTTGT+CGG + Chr6:111414734-111414753 MsG0680035738.01.T02:three_prime_UTR 40.0%
! ATGGTGGAGATCATGAAAGA+TGG + Chr6:111415561-111415580 MsG0680035738.01.T02:three_prime_UTR 40.0%
! CTAGTATTATCCGCATTGAC+GGG - Chr6:111415745-111415764 None:intergenic 40.0%
! TAGTATTATCCGCATTGACG+GGG - Chr6:111415744-111415763 None:intergenic 40.0%
! TGTGGTTTAACGTTAGTCTG+AGG + Chr6:111414895-111414914 MsG0680035738.01.T02:three_prime_UTR 40.0%
!! TCAGATGCAAAAGTTTTGGC+AGG + Chr6:111414791-111414810 MsG0680035738.01.T02:three_prime_UTR 40.0%
!!! AACATCGAAGGTAGTTTTGG+TGG + Chr6:111414843-111414862 MsG0680035738.01.T02:three_prime_UTR 40.0%
!!! TTTTAGTTTCCCCGTCAATG+CGG + Chr6:111415732-111415751 MsG0680035738.01.T02:three_prime_UTR 40.0%
AAATACAGACTGCACAGGCT+TGG + Chr6:111414376-111414395 MsG0680035738.01.T02:three_prime_UTR 45.0%
ACAAGAACTAGCACAAGACC+CGG - Chr6:111415772-111415791 None:intergenic 45.0%
ATATCTCTTCATACGGGGGA+TGG + Chr6:111415456-111415475 MsG0680035738.01.T02:three_prime_UTR 45.0%
ATTGCAGTTTGTCCACACCT+TGG - Chr6:111415188-111415207 None:intergenic 45.0%
CAAACCATAGACATGGGCAA+GGG + Chr6:111413977-111413996 MsG0680035738.01.T02:CDS 45.0%
CAAATCACAAGTGGCAAGAG+GGG - Chr6:111414496-111414515 None:intergenic 45.0%
CACAAATCACAAGTGGCAAG+AGG - Chr6:111414498-111414517 None:intergenic 45.0%
CAGGATGACTCCCGAAATAA+TGG + Chr6:111414810-111414829 MsG0680035738.01.T02:three_prime_UTR 45.0%
CATATGATCCTCAACCCTTG+AGG + Chr6:111415631-111415650 MsG0680035738.01.T02:three_prime_UTR 45.0%
CCGTCAATGCGGATAATACT+AGG + Chr6:111415743-111415762 MsG0680035738.01.T02:three_prime_UTR 45.0%
CGACTTACATTCTTGCCAAG+AGG - Chr6:111413713-111413732 None:intergenic 45.0%
CGCTTCCAAACATTCGATTG+TGG + Chr6:111414877-111414896 MsG0680035738.01.T02:three_prime_UTR 45.0%
CGGTGGTCAATGATATGAGT+GGG - Chr6:111414136-111414155 None:intergenic 45.0%
CTCCATGTTTGTATGCATGC+CGG - Chr6:111414206-111414225 None:intergenic 45.0%
GAAGCTGCAAACCATAGACA+TGG + Chr6:111413970-111413989 MsG0680035738.01.T02:CDS 45.0%
TCATTTGCAGTCACCTTAGG+GGG - Chr6:111414344-111414363 None:intergenic 45.0%
TCCATGTTTGTATGCATGCC+GGG - Chr6:111414205-111414224 None:intergenic 45.0%
TGCGGATAATACTAGGTCAC+CGG + Chr6:111415750-111415769 MsG0680035738.01.T02:three_prime_UTR 45.0%
TTCCTGTAGCGAGCAACAAT+CGG + Chr6:111413465-111413484 MsG0680035738.01.T02:CDS 45.0%
! CTCTACTCTTTTGTGACTGC+TGG - Chr6:111413346-111413365 None:intergenic 45.0%
! TCAGACAATGCCACTTCTTC+TGG + Chr6:111413635-111413654 MsG0680035738.01.T02:CDS 45.0%
! TCTATGGTTTGCAGCTTCAG+TGG - Chr6:111413968-111413987 None:intergenic 45.0%
! TGTTGCTCATTTTCCCCCTA+AGG + Chr6:111414328-111414347 MsG0680035738.01.T02:three_prime_UTR 45.0%
! TTGGCTTCTGAGAATCCTCT+TGG + Chr6:111413695-111413714 MsG0680035738.01.T02:CDS 45.0%
!! TCAAGAAGCACCAACCTTGT+TGG - Chr6:111413514-111413533 None:intergenic 45.0%
ATAGACCCTCATGACACGAG+AGG - Chr6:111415484-111415503 None:intergenic 50.0%
ATGGATCCTCTCGTGTCATG+AGG + Chr6:111415475-111415494 MsG0680035738.01.T02:three_prime_UTR 50.0%
ATTTCGGTCCTCAAGGGTTG+AGG - Chr6:111415642-111415661 None:intergenic 50.0%
GCAAACCATAGACATGGGCA+AGG + Chr6:111413976-111413995 MsG0680035738.01.T02:CDS 50.0%
GCGGATAATACTAGGTCACC+GGG + Chr6:111415751-111415770 MsG0680035738.01.T02:three_prime_UTR 50.0%
GCGGTGGTCAATGATATGAG+TGG - Chr6:111414137-111414156 None:intergenic 50.0%
GGGCAAGGGAGCAGTAAAAT+TGG + Chr6:111413991-111414010 MsG0680035738.01.T02:CDS 50.0%
GGTTTGCAGCTTCAGTGGAT+GGG - Chr6:111413963-111413982 None:intergenic 50.0%
GTTTGCAGCTTCAGTGGATG+GGG - Chr6:111413962-111413981 None:intergenic 50.0%
TCCCGGCATGCATACAAACA+TGG + Chr6:111414201-111414220 MsG0680035738.01.T02:three_prime_UTR 50.0%
TCCTGTAGCGAGCAACAATC+GGG + Chr6:111413466-111413485 MsG0680035738.01.T02:CDS 50.0%
TGGATCCTCTCGTGTCATGA+GGG + Chr6:111415476-111415495 MsG0680035738.01.T02:three_prime_UTR 50.0%
TTGTTGCTCGCTACAGGAAC+CGG - Chr6:111413464-111413483 None:intergenic 50.0%
! GCTTGCAAGTGATTTGCCCA+TGG + Chr6:111414245-111414264 MsG0680035738.01.T02:three_prime_UTR 50.0%
! TGGTTTGCAGCTTCAGTGGA+TGG - Chr6:111413964-111413983 None:intergenic 50.0%
AGTGGATGGGGAAGGCTTCA+AGG - Chr6:111413950-111413969 None:intergenic 55.0%
CAACAATCGGGCAATGCCCA+TGG + Chr6:111413478-111413497 MsG0680035738.01.T02:CDS 55.0%
CAAGTGGCAAGAGGGGCAAA+TGG - Chr6:111414489-111414508 None:intergenic 55.0%
TGCTCCCTTGCCCATGTCTA+TGG - Chr6:111413984-111414003 None:intergenic 55.0%
GCAGCTTCAGTGGATGGGGA+AGG - Chr6:111413958-111413977 None:intergenic 60.0%
GCCCGATTGTTGCTCGCTAC+AGG - Chr6:111413470-111413489 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 111413293 111415868 111413293 ID=MsG0680035738.01;Name=MsG0680035738.01
Chr6 mRNA 111413293 111415868 111413293 ID=MsG0680035738.01.T01;Parent=MsG0680035738.01;Name=MsG0680035738.01.T01;_AED=0.40;_eAED=0.40;_QI=0|1|0.87|1|0.42|0.37|8|877|146
Chr6 exon 111414179 111414288 111414179 ID=MsG0680035738.01.T01:exon:9123;Parent=MsG0680035738.01.T01
Chr6 exon 111414772 111414852 111414772 ID=MsG0680035738.01.T01:exon:9124;Parent=MsG0680035738.01.T01
Chr6 exon 111415102 111415189 111415102 ID=MsG0680035738.01.T01:exon:9125;Parent=MsG0680035738.01.T01
Chr6 CDS 111413293 111413382 111413293 ID=MsG0680035738.01.T01:cds;Parent=MsG0680035738.01.T01
Chr6 CDS 111413461 111413518 111413461 ID=MsG0680035738.01.T01:cds;Parent=MsG0680035738.01.T01
Chr6 CDS 111413609 111413724 111413609 ID=MsG0680035738.01.T01:cds;Parent=MsG0680035738.01.T01
Chr6 CDS 111413886 111414062 111413886 ID=MsG0680035738.01.T01:cds;Parent=MsG0680035738.01.T01
Chr6 three_prime_UTR 111414063 111414074 111414063 ID=MsG0680035738.01.T01:three_prime_utr;Parent=MsG0680035738.01.T01
Chr6 three_prime_UTR 111414179 111414288 111414179 ID=MsG0680035738.01.T01:three_prime_utr;Parent=MsG0680035738.01.T01
Chr6 three_prime_UTR 111414772 111414852 111414772 ID=MsG0680035738.01.T01:three_prime_utr;Parent=MsG0680035738.01.T01
Chr6 three_prime_UTR 111415102 111415189 111415102 ID=MsG0680035738.01.T01:three_prime_utr;Parent=MsG0680035738.01.T01
Chr6 three_prime_UTR 111415283 111415868 111415283 ID=MsG0680035738.01.T01:three_prime_utr;Parent=MsG0680035738.01.T01
Chr6 mRNA 111413293 111415868 111413293 ID=MsG0680035738.01.T02;Parent=MsG0680035738.01;Name=MsG0680035738.01.T02;_AED=0.34;_eAED=0.34;_QI=0|1|0.83|1|0.6|0.5|6|1609|146
Chr6 exon 111414179 111415189 111414179 ID=MsG0680035738.01.T02:exon:9127;Parent=MsG0680035738.01.T02
Chr6 CDS 111413293 111413382 111413293 ID=MsG0680035738.01.T02:cds;Parent=MsG0680035738.01.T02
Chr6 CDS 111413461 111413518 111413461 ID=MsG0680035738.01.T02:cds;Parent=MsG0680035738.01.T02
Chr6 CDS 111413609 111413724 111413609 ID=MsG0680035738.01.T02:cds;Parent=MsG0680035738.01.T02
Chr6 CDS 111413886 111414062 111413886 ID=MsG0680035738.01.T02:cds;Parent=MsG0680035738.01.T02
Chr6 three_prime_UTR 111414063 111414074 111414063 ID=MsG0680035738.01.T02:three_prime_utr;Parent=MsG0680035738.01.T02
Chr6 three_prime_UTR 111414179 111415189 111414179 ID=MsG0680035738.01.T02:three_prime_utr;Parent=MsG0680035738.01.T02
Chr6 three_prime_UTR 111415283 111415868 111415283 ID=MsG0680035738.01.T02:three_prime_utr;Parent=MsG0680035738.01.T02
Gene Sequence

>MsG0680035738.01.T01

ATGACAGGTTACAAATTTGATTATGTATTTGATTGGACAATTTTGAAGTACCAGCAGTCACAAAAGAGTAGAGCTCAGACTCACATATCCCCGGTTCCTGTAGCGAGCAACAATCGGGCAATGCCCATGGATATTGATAACCAACAAGGGAATGTCTCTGCAGAGCAAATTAGATCAGACAATGCCACTTCTTCTGGTGTTAAGTTCCAGTTTAAATCATCAGGCGGTAAAAATTTGGCTTCTGAGAATCCTCTTGGCAAGAATATTTTTGGTGAAGCAACTATCCCTTCTACTTCACACTCTTTTGAAGCATCAAGAAGGAACTCCTTGAAGCCTTCCCCATCCACTGAAGCTGCAAACCATAGACATGGGCAAGGGAGCAGTAAAATTGGTCCTTCAAGTAGTCGGATGAATGTTCTTCACATAAGTTCTGCTAAATAA

>MsG0680035738.01.T02

ATGACAGGTTACAAATTTGATTATGTATTTGATTGGACAATTTTGAAGTACCAGCAGTCACAAAAGAGTAGAGCTCAGACTCACATATCCCCGGTTCCTGTAGCGAGCAACAATCGGGCAATGCCCATGGATATTGATAACCAACAAGGGAATGTCTCTGCAGAGCAAATTAGATCAGACAATGCCACTTCTTCTGGTGTTAAGTTCCAGTTTAAATCATCAGGCGGTAAAAATTTGGCTTCTGAGAATCCTCTTGGCAAGAATATTTTTGGTGAAGCAACTATCCCTTCTACTTCACACTCTTTTGAAGCATCAAGAAGGAACTCCTTGAAGCCTTCCCCATCCACTGAAGCTGCAAACCATAGACATGGGCAAGGGAGCAGTAAAATTGGTCCTTCAAGTAGTCGGATGAATGTTCTTCACATAAGTTCTGCTAAATAA
Protein sequence

>MsG0680035738.01.T01

MTGYKFDYVFDWTILKYQQSQKSRAQTHISPVPVASNNRAMPMDIDNQQGNVSAEQIRSDNATSSGVKFQFKSSGGKNLASENPLGKNIFGEATIPSTSHSFEASRRNSLKPSPSTEAANHRHGQGSSKIGPSSSRMNVLHISSAK*

>MsG0680035738.01.T02

MTGYKFDYVFDWTILKYQQSQKSRAQTHISPVPVASNNRAMPMDIDNQQGNVSAEQIRSDNATSSGVKFQFKSSGGKNLASENPLGKNIFGEATIPSTSHSFEASRRNSLKPSPSTEAANHRHGQGSSKIGPSSSRMNVLHISSAK*