AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040884.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040884.01.T01 MTR_7g100410 95.431 197 7 1 1 197 1 195 7.15e-133 378
MsG0780040884.01.T01 MTR_7g100430 65.049 206 32 3 205 371 107 311 6.24e-78 251
MsG0780040884.01.T01 MTR_1g115575 51.659 211 62 3 200 371 110 319 2.20e-55 191
MsG0780040884.01.T01 MTR_4g062100 43.949 157 83 3 224 376 108 263 4.76e-27 112
MsG0780040884.01.T01 MTR_2g096190 43.312 157 84 3 224 376 104 259 1.06e-26 111
MsG0780040884.01.T01 MTR_7g100390 38.411 151 88 3 224 370 87 236 2.52e-21 95.9
MsG0780040884.01.T01 MTR_7g117620 38.150 173 100 4 198 366 95 264 2.73e-20 92.8
MsG0780040884.01.T01 MTR_1g032100 35.294 187 113 5 189 371 62 244 6.87e-20 91.7
MsG0780040884.01.T01 MTR_8g105260 34.659 176 108 4 200 371 79 251 5.21e-18 85.9
MsG0780040884.01.T01 MTR_1g040020 29.293 198 125 5 6 192 25 218 5.31e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040884.01.T01 AT3G09550 53.883 206 55 3 205 371 127 331 4.43e-57 196
MsG0780040884.01.T01 AT3G09550 53.883 206 55 3 205 371 127 331 4.43e-57 196
MsG0780040884.01.T01 AT3G09550 53.883 206 55 3 205 371 134 338 6.30e-57 196
MsG0780040884.01.T01 AT3G12360 50.481 208 63 3 205 373 101 307 1.16e-49 176
MsG0780040884.01.T01 AT3G12360 50.481 208 63 3 205 373 113 319 1.44e-49 176
MsG0780040884.01.T01 ATCG00810 57.143 126 54 0 77 202 8 133 4.73e-44 150
MsG0780040884.01.T01 AT1G07710 43.590 156 83 3 224 375 104 258 1.97e-25 108
MsG0780040884.01.T01 AT1G07710 43.590 156 83 3 224 375 104 258 1.97e-25 108
MsG0780040884.01.T01 AT5G60070 41.722 151 82 3 228 373 115 264 1.41e-24 105
MsG0780040884.01.T01 AT2G31820 38.372 172 99 4 203 370 208 376 8.63e-22 97.8
MsG0780040884.01.T01 AT2G01680 38.690 168 95 4 209 369 79 245 1.72e-21 96.3
MsG0780040884.01.T01 AT5G02620 41.060 151 84 3 224 370 94 243 2.58e-21 95.9
MsG0780040884.01.T01 AT5G02620 41.060 151 84 3 224 370 94 243 2.58e-21 95.9
MsG0780040884.01.T01 AT5G02620 39.735 151 86 3 224 370 94 243 4.98e-21 95.1
MsG0780040884.01.T01 AT5G02620 39.735 151 86 3 224 370 94 243 4.98e-21 95.1
MsG0780040884.01.T01 AT5G02620 39.735 151 86 3 224 370 94 243 4.98e-21 95.1
MsG0780040884.01.T01 AT1G05640 37.209 172 101 4 203 370 172 340 1.11e-18 88.2

Find 88 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGAGGAGGAGGGTATTT+TGG 0.073604 7:+83833032 None:intergenic
AGCTAATGCAAGTAATAATT+TGG 0.151803 7:-83832546 MsG0780040884.01.T01:CDS
CATATTACTATCACAGTTAA+AGG 0.160148 7:-83832407 MsG0780040884.01.T01:CDS
AAAGAGCCATTGGAGGAAAT+TGG 0.234744 7:+83833145 None:intergenic
AGGAGGAGGAGGAAGGTTAA+TGG 0.247161 7:+83833113 None:intergenic
TACCTCTACCCTCTTCTTCC+TGG 0.277013 7:+83831005 None:intergenic
CGAAGAAACACTTATGATAT+TGG 0.304002 7:-83832624 MsG0780040884.01.T01:CDS
CCTTTGACCGCCATATAAAA+TGG 0.304226 7:+83831126 None:intergenic
CATATGTTTGCTCTCTTGTA+AGG 0.304310 7:+83831313 None:intergenic
TTGGGGAATTTGAGTAGGTT+GGG 0.330399 7:+83833051 None:intergenic
CTTAAGATTGTGTTCTCTGC+TGG 0.333514 7:-83832569 MsG0780040884.01.T01:CDS
CTCAGCGATAAGATTGGAAT+TGG 0.335022 7:+83833224 None:intergenic
CACGTTTCCACTTCCCAATT+CGG 0.349688 7:-83832943 MsG0780040884.01.T01:CDS
GCTAATGCAAGTAATAATTT+GGG 0.377507 7:-83832545 MsG0780040884.01.T01:CDS
AACTTTCTCAGCGATAAGAT+TGG 0.381544 7:+83833218 None:intergenic
GTAAAAGAGTACCTCCGAAT+TGG 0.389754 7:+83832929 None:intergenic
TTTGGGGAATTTGAGTAGGT+TGG 0.391038 7:+83833050 None:intergenic
TTCTTCCCAATTTCCTCCAA+TGG 0.394410 7:-83833151 MsG0780040884.01.T01:exon
GAGCTCAAGGTCGTGCTAAC+CGG 0.396084 7:-83832448 MsG0780040884.01.T01:CDS
ATCATAAGTGTTTCTTCGTA+TGG 0.409872 7:+83832629 None:intergenic
TCCTCCTCCTCCTCTTTCAA+TGG 0.423505 7:-83833021 MsG0780040884.01.T01:CDS
GACAAGTACGCTTTAGAATC+CGG 0.429131 7:+83832429 None:intergenic
TAAAAGAGTACCTCCGAATT+GGG 0.437692 7:+83832930 None:intergenic
ATGCAGAAGCCGTTGCTGTT+GGG 0.438615 7:-83832712 MsG0780040884.01.T01:CDS
ATGGAGTGCATTCTTTCCAT+TGG 0.444423 7:+83831242 None:intergenic
ATTGAAATTGAGAAGAAAGT+AGG 0.452765 7:+83833079 None:intergenic
AAGAGCCATTGGAGGAAATT+GGG 0.454627 7:+83833146 None:intergenic
ATTGAAAGAGGAGGAGGAGG+AGG 0.454978 7:+83833023 None:intergenic
AGAGAACACAATCTTAAGAA+TGG 0.469873 7:+83832574 None:intergenic
GCAAATGTCTTGATTAGCTC+TGG 0.471908 7:+83831366 None:intergenic
CACATTGACCTCATTGAGAA+TGG 0.472751 7:+83832006 None:intergenic
ATGGTTTCGCAGGCGCGATA+AGG 0.474508 7:+83832593 None:intergenic
GCAGTGTTTCGAAACTTGTC+AGG 0.474631 7:+83831045 None:intergenic
TGGGGAATTTGAGTAGGTTG+GGG 0.482666 7:+83833052 None:intergenic
GCCATTGAAAGAGGAGGAGG+AGG 0.483893 7:+83833020 None:intergenic
GAGGGAAATGCCATTGAAAG+AGG 0.491910 7:+83833011 None:intergenic
CTGTTTACCGCTGCTGAGAA+AGG 0.492663 7:-83831968 MsG0780040884.01.T01:CDS
ATCCTTGGCATGAAGCTGAA+TGG 0.503939 7:+83831223 None:intergenic
AGAGTCATCGACACAATTCG+TGG 0.506998 7:-83832656 MsG0780040884.01.T01:CDS
CAATGGCATTTCCCTCAAAA+CGG 0.507019 7:-83833004 MsG0780040884.01.T01:CDS
AAGGATATGTTGATGTTGTC+AGG 0.508749 7:-83831206 MsG0780040884.01.T01:CDS
TCTTGATTAGCTCTGGATCA+TGG 0.513054 7:+83831373 None:intergenic
AGGTTATCGCGAAGAGGAGG+AGG 0.521234 7:+83833099 None:intergenic
TATGCAGAAGCCGTTGCTGT+TGG 0.521868 7:-83832713 MsG0780040884.01.T01:CDS
GCGATAAGATTGGAATTGGA+TGG 0.529941 7:+83833228 None:intergenic
TTATCGCGAAGAGGAGGAGG+AGG 0.533368 7:+83833102 None:intergenic
ATTGGAGGAAATTGGGAAGA+AGG 0.535246 7:+83833153 None:intergenic
AATCTTAAGAATGGTTTCGC+AGG 0.540497 7:+83832583 None:intergenic
TGACAACATCAACATATCCT+TGG 0.540841 7:+83831208 None:intergenic
AGTACCTCCGAATTGGGAAG+TGG 0.543945 7:+83832936 None:intergenic
CTAGCTAATTCTAACTGACT+AGG 0.547684 7:+83831267 None:intergenic
AGTAAAGCTGAGGTTAATGA+AGG 0.549014 7:-83832497 MsG0780040884.01.T01:CDS
TTAGAATTAGCTAGATCCAA+TGG 0.554133 7:-83831258 MsG0780040884.01.T01:CDS
CTCCATTCAGCTTCATGCCA+AGG 0.560266 7:-83831225 MsG0780040884.01.T01:CDS
GCGGTTAAAGAAAGAGCCAT+TGG 0.564174 7:+83833135 None:intergenic
ATATGTTTGCTCTCTTGTAA+GGG 0.565381 7:+83831314 None:intergenic
CTCTACCCTCTTCTTCCTGG+TGG 0.567336 7:+83831008 None:intergenic
AATGCCATTGAAAGAGGAGG+AGG 0.570879 7:+83833017 None:intergenic
CACCAGGAAGAAGAGGGTAG+AGG 0.576801 7:-83831007 MsG0780040884.01.T01:CDS
GATGTTGTCAGGATATTGCT+AGG 0.578352 7:-83831195 MsG0780040884.01.T01:CDS
CGCGAAGAGGAGGAGGAGGA+AGG 0.578691 7:+83833106 None:intergenic
ATGTAGCCACCAGGAAGAAG+AGG 0.579614 7:-83831014 MsG0780040884.01.T01:CDS
TTTAGTTATTAGTAAAGCTG+AGG 0.585548 7:-83832507 MsG0780040884.01.T01:CDS
GTGGAAACGTGACAAGCGAA+AGG 0.589894 7:+83832955 None:intergenic
AGAACAAGACCACGAGCTCA+AGG 0.591807 7:-83832461 MsG0780040884.01.T01:CDS
GCTTCGACAACAGACTCAGC+AGG 0.592546 7:+83832380 None:intergenic
AGTAGGTTATCGCGAAGAGG+AGG 0.594149 7:+83833096 None:intergenic
TGTAGCCACCAGGAAGAAGA+GGG 0.595191 7:-83831013 MsG0780040884.01.T01:CDS
ATGTTGTCAGGATATTGCTA+GGG 0.597334 7:-83831194 MsG0780040884.01.T01:CDS
GCTCGAAGGACTGATAAGAA+AGG 0.603769 7:-83831156 MsG0780040884.01.T01:CDS
CATTGCAACATGTAGCCACC+AGG 0.604927 7:-83831023 MsG0780040884.01.T01:CDS
AGGACGTGCAGCTTGCTCGA+AGG 0.607568 7:-83831170 MsG0780040884.01.T01:CDS
AATGTGTTTCCCAACAGCAA+CGG 0.608575 7:+83832703 None:intergenic
GGAAATGCCATTGAAAGAGG+AGG 0.609125 7:+83833014 None:intergenic
CAAAGGAGTTAGTTGTGAAG+TGG 0.610992 7:-83831109 MsG0780040884.01.T01:CDS
CTTGTAAGGGCAGATACAAG+AGG 0.618043 7:+83831327 None:intergenic
GGAATTTGAGTAGGTTGGGG+CGG 0.619152 7:+83833055 None:intergenic
TGGAAACGTGACAAGCGAAA+GGG 0.620617 7:+83832956 None:intergenic
TTAGCACGACCTTGAGCTCG+TGG 0.620789 7:+83832452 None:intergenic
GTTTCCACTTCCCAATTCGG+AGG 0.621201 7:-83832940 MsG0780040884.01.T01:intron
GAAAGTAGGTTATCGCGAAG+AGG 0.631393 7:+83833093 None:intergenic
TTGAAAGAGGAGGAGGAGGA+GGG 0.632435 7:+83833024 None:intergenic
GTTAAAGAAAGAGCCATTGG+AGG 0.635612 7:+83833138 None:intergenic
TGTCAGGATATTGCTAGGGA+AGG 0.637318 7:-83831190 MsG0780040884.01.T01:CDS
AAGATCATCCATTCTCAATG+AGG 0.638894 7:-83832014 MsG0780040884.01.T01:CDS
AGGAGGAGGAAGGTTAATGG+CGG 0.642023 7:+83833116 None:intergenic
AAAACGTCCTTTCTCAGCAG+CGG 0.650925 7:+83831961 None:intergenic
CTCAGCAGCGGTAAACAGAG+CGG 0.652456 7:+83831973 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAATTAATTTATTTTGTTA+TGG - Chr7:83832084-83832103 MsG0780040884.01.T01:intron 10.0%
!!! TTTATTTTATTTTTTCGTTA+TGG - Chr7:83832645-83832664 MsG0780040884.01.T01:CDS 10.0%
!! AGTTTGATTAAAATATTGAA+TGG + Chr7:83831377-83831396 None:intergenic 15.0%
!!! AATTCTATAATGAAATGTTT+TGG - Chr7:83832050-83832069 MsG0780040884.01.T01:CDS 15.0%
!!! CACAATTATAACTTTTTTTT+GGG + Chr7:83832430-83832449 None:intergenic 15.0%
!!! GTATTTTTATATTTATACCT+CGG + Chr7:83832351-83832370 None:intergenic 15.0%
!!! TCAATATTTTAATCAAACTT+TGG - Chr7:83831378-83831397 MsG0780040884.01.T01:CDS 15.0%
!!! TCACAATTATAACTTTTTTT+TGG + Chr7:83832431-83832450 None:intergenic 15.0%
!! TATCTAAGCACTTATATAAT+AGG - Chr7:83832676-83832695 MsG0780040884.01.T01:CDS 20.0%
!! TTATATATTGTTGTGAATTG+TGG - Chr7:83832791-83832810 MsG0780040884.01.T01:intron 20.0%
!!! ATAATGAAATGTTTTGGTAT+TGG - Chr7:83832056-83832075 MsG0780040884.01.T01:intron 20.0%
!!! ATACAGATACATATACTTTT+TGG + Chr7:83831882-83831901 None:intergenic 20.0%
!!! ATTAATTGATGATCAAATGA+TGG - Chr7:83832131-83832150 MsG0780040884.01.T01:intron 20.0%
!!! ATTTTAATTTAATGCAGTTC+AGG - Chr7:83831462-83831481 MsG0780040884.01.T01:intron 20.0%
!!! TTAATTGATGATCAAATGAT+GGG - Chr7:83832132-83832151 MsG0780040884.01.T01:intron 20.0%
! AATTAATCTGCTTAGTTAGA+TGG - Chr7:83831413-83831432 MsG0780040884.01.T01:intron 25.0%
! AGCTAATGCAAGTAATAATT+TGG - Chr7:83831666-83831685 MsG0780040884.01.T01:intron 25.0%
! ATAAGCTGAAAACAGTTTAT+AGG + Chr7:83832562-83832581 None:intergenic 25.0%
! ATTCCATCAAATGTAATGAT+AGG + Chr7:83831917-83831936 None:intergenic 25.0%
! ATTGAAATTGAGAAGAAAGT+AGG + Chr7:83831136-83831155 None:intergenic 25.0%
! CATATTACTATCACAGTTAA+AGG - Chr7:83831805-83831824 MsG0780040884.01.T01:intron 25.0%
! GCTAATGCAAGTAATAATTT+GGG - Chr7:83831667-83831686 MsG0780040884.01.T01:intron 25.0%
! TCAAATAATCTAATCCAAAC+AGG + Chr7:83832472-83832491 None:intergenic 25.0%
! TTTAGTTATTAGTAAAGCTG+AGG - Chr7:83831705-83831724 MsG0780040884.01.T01:intron 25.0%
!!! ATATACTTTTTGGCTCAAAT+AGG + Chr7:83831872-83831891 None:intergenic 25.0%
AGAGAACACAATCTTAAGAA+TGG + Chr7:83831641-83831660 None:intergenic 30.0%
AGTTGTTTATACAAACAGTC+AGG - Chr7:83832709-83832728 MsG0780040884.01.T01:CDS 30.0%
ATATGTTTGCTCTCTTGTAA+GGG + Chr7:83832901-83832920 None:intergenic 30.0%
ATCATAAGTGTTTCTTCGTA+TGG + Chr7:83831586-83831605 None:intergenic 30.0%
CGAAGAAACACTTATGATAT+TGG - Chr7:83831588-83831607 MsG0780040884.01.T01:intron 30.0%
CTTATTTCCATATGCTCTTT+AGG - Chr7:83832577-83832596 MsG0780040884.01.T01:CDS 30.0%
TTAGAATTAGCTAGATCCAA+TGG - Chr7:83832954-83832973 MsG0780040884.01.T01:CDS 30.0%
! ACAATCTCCATTTTATATGG+CGG - Chr7:83833079-83833098 MsG0780040884.01.T01:CDS 30.0%
! AGGACAATCTCCATTTTATA+TGG - Chr7:83833076-83833095 MsG0780040884.01.T01:CDS 30.0%
AACCTAGTGTGAGACTATTT+GGG - Chr7:83832508-83832527 MsG0780040884.01.T01:CDS 35.0%
AACTTTCTCAGCGATAAGAT+TGG + Chr7:83830997-83831016 None:intergenic 35.0%
AAGATCATCCATTCTCAATG+AGG - Chr7:83832198-83832217 MsG0780040884.01.T01:intron 35.0%
AAGGATATGTTGATGTTGTC+AGG - Chr7:83833006-83833025 MsG0780040884.01.T01:CDS 35.0%
AATCTTAAGAATGGTTTCGC+AGG + Chr7:83831632-83831651 None:intergenic 35.0%
ACTAGGTTATGTCAACAGAT+AGG + Chr7:83832496-83832515 None:intergenic 35.0%
AGTAAAGCTGAGGTTAATGA+AGG - Chr7:83831715-83831734 MsG0780040884.01.T01:intron 35.0%
ATGTTGTCAGGATATTGCTA+GGG - Chr7:83833018-83833037 MsG0780040884.01.T01:CDS 35.0%
CATATGTTTGCTCTCTTGTA+AGG + Chr7:83832902-83832921 None:intergenic 35.0%
CCATCAAATGTAATGATAGG+AGG + Chr7:83831914-83831933 None:intergenic 35.0%
CCTCCTATCATTACATTTGA+TGG - Chr7:83831911-83831930 MsG0780040884.01.T01:intron 35.0%
CTAGCTAATTCTAACTGACT+AGG + Chr7:83832948-83832967 None:intergenic 35.0%
GCTTAGTTAGATGGATATGA+TGG - Chr7:83831422-83831441 MsG0780040884.01.T01:intron 35.0%
TAACCTAGTGTGAGACTATT+TGG - Chr7:83832507-83832526 MsG0780040884.01.T01:CDS 35.0%
TGACAACATCAACATATCCT+TGG + Chr7:83833007-83833026 None:intergenic 35.0%
TGTGATTGCTTTAGTGCTAT+TGG - Chr7:83832446-83832465 MsG0780040884.01.T01:CDS 35.0%
! AAGCTATCCTAAAGAGCATA+TGG + Chr7:83832587-83832606 None:intergenic 35.0%
! AGGGTTGTTGTTGTTGTTAT+TGG + Chr7:83831240-83831259 None:intergenic 35.0%
! GGGTTGTTGTTGTTGTTATT+GGG + Chr7:83831239-83831258 None:intergenic 35.0%
!! GTATTTTGGGGAATTTGAGT+AGG + Chr7:83831169-83831188 None:intergenic 35.0%
!! TAAAAGAGTACCTCCGAATT+GGG + Chr7:83831285-83831304 None:intergenic 35.0%
!!! TTCTGCATTTTGACTTCTAC+AGG - Chr7:83831972-83831991 MsG0780040884.01.T01:CDS 35.0%
AAAGAGCCATTGGAGGAAAT+TGG + Chr7:83831070-83831089 None:intergenic 40.0%
AAGAGCCATTGGAGGAAATT+GGG + Chr7:83831069-83831088 None:intergenic 40.0%
AATGTGTTTCCCAACAGCAA+CGG + Chr7:83831512-83831531 None:intergenic 40.0%
ATGGAGTGCATTCTTTCCAT+TGG + Chr7:83832973-83832992 None:intergenic 40.0%
ATTGGAGGAAATTGGGAAGA+AGG + Chr7:83831062-83831081 None:intergenic 40.0%
ATTTATACCTCGGTGACCTT+CGG + Chr7:83832341-83832360 None:intergenic 40.0%
CAAAGGAGTTAGTTGTGAAG+TGG - Chr7:83833103-83833122 MsG0780040884.01.T01:CDS 40.0%
CAATGGCATTTCCCTCAAAA+CGG - Chr7:83831208-83831227 MsG0780040884.01.T01:CDS 40.0%
CACATTGACCTCATTGAGAA+TGG + Chr7:83832209-83832228 None:intergenic 40.0%
CCTTTGACCGCCATATAAAA+TGG + Chr7:83833089-83833108 None:intergenic 40.0%
CTCAGCGATAAGATTGGAAT+TGG + Chr7:83830991-83831010 None:intergenic 40.0%
CTTAAGATTGTGTTCTCTGC+TGG - Chr7:83831643-83831662 MsG0780040884.01.T01:intron 40.0%
GATGTTGTCAGGATATTGCT+AGG - Chr7:83833017-83833036 MsG0780040884.01.T01:CDS 40.0%
GCGATAAGATTGGAATTGGA+TGG + Chr7:83830987-83831006 None:intergenic 40.0%
GTTAAAGAAAGAGCCATTGG+AGG + Chr7:83831077-83831096 None:intergenic 40.0%
TCTCTTTAGTAGCGTAAGGA+AGG + Chr7:83832294-83832313 None:intergenic 40.0%
TTCCCAAATAGTCTCACACT+AGG + Chr7:83832513-83832532 None:intergenic 40.0%
TTCTTCCCAATTTCCTCCAA+TGG - Chr7:83831061-83831080 MsG0780040884.01.T01:CDS 40.0%
TTGGCTCAAATAGGATCAAG+AGG + Chr7:83831863-83831882 None:intergenic 40.0%
TTGGGGAATTTGAGTAGGTT+GGG + Chr7:83831164-83831183 None:intergenic 40.0%
TTTGGGGAATTTGAGTAGGT+TGG + Chr7:83831165-83831184 None:intergenic 40.0%
! ATTGGGAGTAACCGTTTTGA+GGG + Chr7:83831222-83831241 None:intergenic 40.0%
! CAAATGATGGGAACATTCAG+TGG - Chr7:83832144-83832163 MsG0780040884.01.T01:intron 40.0%
! CCATTTTATATGGCGGTCAA+AGG - Chr7:83833086-83833105 MsG0780040884.01.T01:CDS 40.0%
! GCAAATGTCTTGATTAGCTC+TGG + Chr7:83832849-83832868 None:intergenic 40.0%
! TATTGGGAGTAACCGTTTTG+AGG + Chr7:83831223-83831242 None:intergenic 40.0%
! TTTAGTGCTATTGGCCTGTT+TGG - Chr7:83832455-83832474 MsG0780040884.01.T01:CDS 40.0%
!! GACAAGTACGCTTTAGAATC+CGG + Chr7:83831786-83831805 None:intergenic 40.0%
!! GTAAAAGAGTACCTCCGAAT+TGG + Chr7:83831286-83831305 None:intergenic 40.0%
!! TCTTGATTAGCTCTGGATCA+TGG + Chr7:83832842-83832861 None:intergenic 40.0%
AAAACGTCCTTTCTCAGCAG+CGG + Chr7:83832254-83832273 None:intergenic 45.0%
AATGCCATTGAAAGAGGAGG+AGG + Chr7:83831198-83831217 None:intergenic 45.0%
AGAGTCATCGACACAATTCG+TGG - Chr7:83831556-83831575 MsG0780040884.01.T01:intron 45.0%
ATCCTTGGCATGAAGCTGAA+TGG + Chr7:83832992-83833011 None:intergenic 45.0%
CACGTTTCCACTTCCCAATT+CGG - Chr7:83831269-83831288 MsG0780040884.01.T01:CDS 45.0%
CTTGTAAGGGCAGATACAAG+AGG + Chr7:83832888-83832907 None:intergenic 45.0%
GAAAGTAGGTTATCGCGAAG+AGG + Chr7:83831122-83831141 None:intergenic 45.0%
GAGGGAAATGCCATTGAAAG+AGG + Chr7:83831204-83831223 None:intergenic 45.0%
GCAGTCTCTTTAGTAGCGTA+AGG + Chr7:83832298-83832317 None:intergenic 45.0%
GCAGTGTTTCGAAACTTGTC+AGG + Chr7:83833170-83833189 None:intergenic 45.0%
GCGGTTAAAGAAAGAGCCAT+TGG + Chr7:83831080-83831099 None:intergenic 45.0%
GCTCGAAGGACTGATAAGAA+AGG - Chr7:83833056-83833075 MsG0780040884.01.T01:CDS 45.0%
GGAAATGCCATTGAAAGAGG+AGG + Chr7:83831201-83831220 None:intergenic 45.0%
TGCATATTGCAGCAAACCGA+AGG - Chr7:83832322-83832341 MsG0780040884.01.T01:intron 45.0%
TGGAAACGTGACAAGCGAAA+GGG + Chr7:83831259-83831278 None:intergenic 45.0%
TGGGGAATTTGAGTAGGTTG+GGG + Chr7:83831163-83831182 None:intergenic 45.0%
TGTCAGGATATTGCTAGGGA+AGG - Chr7:83833022-83833041 MsG0780040884.01.T01:CDS 45.0%
!! TCGGTTTGCTGCAATATGCA+AGG + Chr7:83832322-83832341 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTTGAA+TGG + Chr7:83831347-83831366 None:intergenic 5.0%
AGAACAAGACCACGAGCTCA+AGG - Chr7:83831751-83831770 MsG0780040884.01.T01:intron 50.0%
AGGAGGAGGAAGGTTAATGG+CGG + Chr7:83831099-83831118 None:intergenic 50.0%
AGGAGGAGGAGGAAGGTTAA+TGG + Chr7:83831102-83831121 None:intergenic 50.0%
AGTACCTCCGAATTGGGAAG+TGG + Chr7:83831279-83831298 None:intergenic 50.0%
AGTAGGTTATCGCGAAGAGG+AGG + Chr7:83831119-83831138 None:intergenic 50.0%
ATGTAGCCACCAGGAAGAAG+AGG - Chr7:83833198-83833217 MsG0780040884.01.T01:five_prime_UTR 50.0%
ATTGAAAGAGGAGGAGGAGG+AGG + Chr7:83831192-83831211 None:intergenic 50.0%
CATTGCAACATGTAGCCACC+AGG - Chr7:83833189-83833208 MsG0780040884.01.T01:five_prime_UTR 50.0%
CTCCATTCAGCTTCATGCCA+AGG - Chr7:83832987-83833006 MsG0780040884.01.T01:CDS 50.0%
CTGTTTACCGCTGCTGAGAA+AGG - Chr7:83832244-83832263 MsG0780040884.01.T01:intron 50.0%
GTGGAAACGTGACAAGCGAA+AGG + Chr7:83831260-83831279 None:intergenic 50.0%
GTTTCCACTTCCCAATTCGG+AGG - Chr7:83831272-83831291 MsG0780040884.01.T01:CDS 50.0%
TACCTCTACCCTCTTCTTCC+TGG + Chr7:83833210-83833229 None:intergenic 50.0%
TATGCAGAAGCCGTTGCTGT+TGG - Chr7:83831499-83831518 MsG0780040884.01.T01:intron 50.0%
TCCTCCTCCTCCTCTTTCAA+TGG - Chr7:83831191-83831210 MsG0780040884.01.T01:CDS 50.0%
TGTAGCCACCAGGAAGAAGA+GGG - Chr7:83833199-83833218 MsG0780040884.01.T01:five_prime_UTR 50.0%
TTGAAAGAGGAGGAGGAGGA+GGG + Chr7:83831191-83831210 None:intergenic 50.0%
! ATGCAGAAGCCGTTGCTGTT+GGG - Chr7:83831500-83831519 MsG0780040884.01.T01:intron 50.0%
! GGAATTTGAGTAGGTTGGGG+CGG + Chr7:83831160-83831179 None:intergenic 50.0%
!!! AGGAGGAGGAGGGTATTTTG+GGG + Chr7:83831181-83831200 None:intergenic 50.0%
!!! GAGGAGGAGGAGGGTATTTT+GGG + Chr7:83831182-83831201 None:intergenic 50.0%
AGGTTATCGCGAAGAGGAGG+AGG + Chr7:83831116-83831135 None:intergenic 55.0%
ATGGTTTCGCAGGCGCGATA+AGG + Chr7:83831622-83831641 None:intergenic 55.0%
CACCAGGAAGAAGAGGGTAG+AGG - Chr7:83833205-83833224 MsG0780040884.01.T01:five_prime_UTR 55.0%
CTCAGCAGCGGTAAACAGAG+CGG + Chr7:83832242-83832261 None:intergenic 55.0%
CTCTACCCTCTTCTTCCTGG+TGG + Chr7:83833207-83833226 None:intergenic 55.0%
GAGCTCAAGGTCGTGCTAAC+CGG - Chr7:83831764-83831783 MsG0780040884.01.T01:intron 55.0%
GCCATTGAAAGAGGAGGAGG+AGG + Chr7:83831195-83831214 None:intergenic 55.0%
GCTTCGACAACAGACTCAGC+AGG + Chr7:83831835-83831854 None:intergenic 55.0%
TTAGCACGACCTTGAGCTCG+TGG + Chr7:83831763-83831782 None:intergenic 55.0%
TTATCGCGAAGAGGAGGAGG+AGG + Chr7:83831113-83831132 None:intergenic 55.0%
!!! GGAGGAGGAGGAGGGTATTT+TGG + Chr7:83831183-83831202 None:intergenic 55.0%
CAGCAAACCGAAGGTCACCG+AGG - Chr7:83832331-83832350 MsG0780040884.01.T01:intron 60.0%
! AGGACGTGCAGCTTGCTCGA+AGG - Chr7:83833042-83833061 MsG0780040884.01.T01:CDS 60.0%
CGCGAAGAGGAGGAGGAGGA+AGG + Chr7:83831109-83831128 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 83830978 83833256 83830978 ID=MsG0780040884.01;Name=MsG0780040884.01
Chr7 mRNA 83830978 83833256 83830978 ID=MsG0780040884.01.T01;Parent=MsG0780040884.01;Name=MsG0780040884.01.T01;_AED=0.43;_eAED=0.43;_QI=102|0.33|0.25|1|0.66|0.75|4|0|377
Chr7 exon 83830978 83831406 83830978 ID=MsG0780040884.01.T01:exon:19929;Parent=MsG0780040884.01.T01
Chr7 exon 83831958 83832070 83831958 ID=MsG0780040884.01.T01:exon:19928;Parent=MsG0780040884.01.T01
Chr7 exon 83832378 83832755 83832378 ID=MsG0780040884.01.T01:exon:19927;Parent=MsG0780040884.01.T01
Chr7 exon 83832941 83833256 83832941 ID=MsG0780040884.01.T01:exon:19926;Parent=MsG0780040884.01.T01
Chr7 five_prime_UTR 83833155 83833256 83833155 ID=MsG0780040884.01.T01:five_prime_utr;Parent=MsG0780040884.01.T01
Chr7 CDS 83832941 83833154 83832941 ID=MsG0780040884.01.T01:cds;Parent=MsG0780040884.01.T01
Chr7 CDS 83832378 83832755 83832378 ID=MsG0780040884.01.T01:cds;Parent=MsG0780040884.01.T01
Chr7 CDS 83831958 83832070 83831958 ID=MsG0780040884.01.T01:cds;Parent=MsG0780040884.01.T01
Chr7 CDS 83830978 83831406 83830978 ID=MsG0780040884.01.T01:cds;Parent=MsG0780040884.01.T01
Gene Sequence

>MsG0780040884.01.T01

ATGGCTCTTTCTTTAACCGCCATTAACCTTCCTCCTCCTCCTCTTCGCGATAACCTACTTTCTTCTCAATTTCAATTCCGCCCCAACCTACTCAAATTCCCCAAAATACCCTCCTCCTCCTCCTCTTTCAATGGCATTTCCCTCAAAACGGTTACTCCCAATAACAACAACAACAACCCTTTCGCTTGTCACGTTTCCACTTCCCAATTCGGAGTTCAGGAGACTAACAAATCGTATGCAGAAGCCGTTGCTGTTGGGAAACACATTCGTATGTCTGCTGACAAAGCTCGAAGAGTCATCGACACAATTCGTGGACGTCCATACGAAGAAACACTTATGATATTGGAACTCATGCCTTATCGCGCCTGCGAAACCATTCTTAAGATTGTGTTCTCTGCTGGAGCTAATGCAAGTAATAATTTGGGTTTAAGCAAATCAAGTTTAGTTATTAGTAAAGCTGAGGTTAATGAAGGCAGAACTATGAAAAGAACAAGACCACGAGCTCAAGGTCGTGCTAACCGGATTCTAAAGCGTACTTGTCATATTACTATCACAGTTAAAGGTTTACCTGCTGAGTCTGTTGTCGAAGCAATGGCGTTGAGTTTGATGTTGAAGCTCACAGATATAAGATCATCCATTCTCAATGAGGTCAATGTGTTGAGTGCAACCGCTCTGTTTACCGCTGCTGAGAAAGGACGTTTTGATTTGCTGCTAGACCATGATCCAGAGCTAATCAAGACATTTGCACAGTCAAATGCAACTCCTCTTGTATCTGCCCTTACAAGAGAGCAAACATATGTTGTTGAACTACTATCATGCGATCCTAGTCAGTTAGAATTAGCTAGATCCAATGGAAAGAATGCACTCCATTCAGCTTCATGCCAAGGATATGTTGATGTTGTCAGGATATTGCTAGGGAAGGACGTGCAGCTTGCTCGAAGGACTGATAAGAAAGGACAATCTCCATTTTATATGGCGGTCAAAGGAGTTAGTTGTGAAGTGGTGAAGTTGCTTCTTGCTGCTGATGTTGCAAGTATCATGCTTCCTGACAAGTTTCGAAACACTGCATTGCAACATGTAGCCACCAGGAAGAAGAGGGTAGAGGTAATTAATGTCTTTGCTGCTCAACTTTAA

Protein sequence

>MsG0780040884.01.T01

MALSLTAINLPPPPLRDNLLSSQFQFRPNLLKFPKIPSSSSSFNGISLKTVTPNNNNNNPFACHVSTSQFGVQETNKSYAEAVAVGKHIRMSADKARRVIDTIRGRPYEETLMILELMPYRACETILKIVFSAGANASNNLGLSKSSLVISKAEVNEGRTMKRTRPRAQGRANRILKRTCHITITVKGLPAESVVEAMALSLMLKLTDIRSSILNEVNVLSATALFTAAEKGRFDLLLDHDPELIKTFAQSNATPLVSALTREQTYVVELLSCDPSQLELARSNGKNALHSASCQGYVDVVRILLGKDVQLARRTDKKGQSPFYMAVKGVSCEVVKLLLAADVASIMLPDKFRNTALQHVATRKKRVEVINVFAAQL*