AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004554.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004554.01.T01 MTR_1g082430 89.956 229 10 5 1 226 1 219 8.59e-141 394
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004554.01.T01 AT5G27390 46.087 230 102 5 1 226 1 212 2.49e-61 192
MsG0180004554.01.T01 AT5G27390 45.887 231 103 5 1 227 1 213 4.46e-61 193
MsG0180004554.01.T01 AT5G27390 45.055 182 85 4 1 178 1 171 1.33e-43 145
MsG0180004554.01.T01 AT5G27390 45.556 180 83 4 1 176 1 169 2.68e-43 145

Find 59 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATACTATTTCTATGAATT+TGG 0.148599 1:+79496946 MsG0180004554.01.T01:CDS
AGTGCCGGAATGAATCTTTA+TGG 0.239943 1:+79495566 MsG0180004554.01.T01:CDS
GAGAATGAGGTTGCGGCGTT+TGG 0.336028 1:-79494104 None:intergenic
GGTATTGGCAATGCCAAGTT+TGG 0.347275 1:-79494008 None:intergenic
ACTTCTCTACTCTGCTGCTT+TGG 0.355137 1:+79494130 MsG0180004554.01.T01:CDS
AGTTCCTGGTACCGTTTCTA+TGG 0.357344 1:+79494229 MsG0180004554.01.T01:CDS
TTATTGTACTAGAATGATAA+TGG 0.360332 1:+79493941 MsG0180004554.01.T01:five_prime_UTR
GCTTAAACTCACCTTCTTAG+AGG 0.363505 1:+79495779 MsG0180004554.01.T01:CDS
GTGCCGGAATGAATCTTTAT+GGG 0.368982 1:+79495567 MsG0180004554.01.T01:CDS
AATGCTAGAAAGAATGGATT+CGG 0.369766 1:-79494197 None:intergenic
AGCAGCAGAGTAGAGAAGTT+TGG 0.373628 1:-79494126 None:intergenic
GCTGCAAAATTATTTATTCC+AGG 0.382623 1:+79496526 MsG0180004554.01.T01:CDS
TAGTAGGCTCAGGATATAAC+TGG 0.385822 1:+79496484 MsG0180004554.01.T01:intron
CTGTTCTGAATGTTATTACT+CGG 0.388036 1:+79495745 MsG0180004554.01.T01:CDS
GTAGAGAAGTTTGGAGAATG+AGG 0.401843 1:-79494117 None:intergenic
GAAGGATTTGGTGTTGGTAT+TGG 0.429870 1:-79494023 None:intergenic
TTATCCACATTTCCCAAACT+TGG 0.431197 1:+79493995 MsG0180004554.01.T01:CDS
AATGAGGTTGCGGCGTTTGG+AGG 0.435338 1:-79494101 None:intergenic
TGGTACCGTTTCTATGGTGA+TGG 0.435901 1:+79494235 MsG0180004554.01.T01:CDS
GTATTGGCAATGCCAAGTTT+GGG 0.449030 1:-79494007 None:intergenic
GCATTGAAAATACCAGTTCC+TGG 0.451415 1:+79494215 MsG0180004554.01.T01:CDS
GTCCCCATAAAGATTCATTC+CGG 0.471869 1:-79495570 None:intergenic
GAGGTTGCGGCGTTTGGAGG+TGG 0.480230 1:-79494098 None:intergenic
AACTGGTTTAGCCTCCTTGA+AGG 0.481925 1:+79496501 MsG0180004554.01.T01:CDS
GTTGCGGCGTTTGGAGGTGG+TGG 0.486040 1:-79494095 None:intergenic
TGGTGGTGTTGTTGTTGTTG+AGG 0.488070 1:-79494078 None:intergenic
ATAGAAACGGTACCAGGAAC+TGG 0.489371 1:-79494227 None:intergenic
ATGCTAGAAAGAATGGATTC+GGG 0.490973 1:-79494196 None:intergenic
GATAAAGCAGGTGGTAGTTG+AGG 0.499700 1:-79494169 None:intergenic
GGGAAATGTGGATAAAAGAA+TGG 0.504323 1:-79493987 None:intergenic
GAAGGTGAGTTTAAGCTGAC+TGG 0.508321 1:-79495772 None:intergenic
GTTGAGGCTGCTACAAATGA+TGG 0.513227 1:-79494062 None:intergenic
AAGTTTGGAGAATGAGGTTG+CGG 0.522919 1:-79494111 None:intergenic
GCACGGTTTGTATCTTCAGA+CGG 0.529950 1:+79495617 MsG0180004554.01.T01:CDS
CTGTCTGATTACCTCTAAGA+AGG 0.541391 1:-79495790 None:intergenic
TGATCTGCACTTAGCAGTGA+TGG 0.544292 1:+79496975 MsG0180004554.01.T01:CDS
ATCACCATAGAAACGGTACC+AGG 0.545907 1:-79494233 None:intergenic
ACCTGAGTTTCAAGATGTCA+TGG 0.547354 1:+79494276 MsG0180004554.01.T01:CDS
CACGGTTTGTATCTTCAGAC+GGG 0.552308 1:+79495618 MsG0180004554.01.T01:CDS
TGTTCTGAATGTTATTACTC+GGG 0.553105 1:+79495746 MsG0180004554.01.T01:CDS
CTGCACTTAGCAGTGATGGC+AGG 0.555281 1:+79496979 MsG0180004554.01.T01:CDS
CGAAACCATCACCATAGAAA+CGG 0.556431 1:-79494240 None:intergenic
TCCATGACATCTTGAAACTC+AGG 0.557107 1:-79494277 None:intergenic
GGCAGGCGTACGAGGTGGAA+AGG 0.562307 1:+79496996 MsG0180004554.01.T01:CDS
GATGATGAAGGATTTGGTGT+TGG 0.582126 1:-79494029 None:intergenic
TCTCTATGCTATCTCTTCGA+TGG 0.602931 1:+79493964 MsG0180004554.01.T01:exon
GCAGTGATGGCAGGCGTACG+AGG 0.618959 1:+79496988 MsG0180004554.01.T01:CDS
ATGACATCTTGAAACTCAGG+TGG 0.623514 1:-79494274 None:intergenic
TGCCGGAATGAATCTTTATG+GGG 0.630101 1:+79495568 MsG0180004554.01.T01:CDS
GATTCGGGTGAAGATAAAGC+AGG 0.632755 1:-79494181 None:intergenic
AATGCCAAGTTTGGGAAATG+TGG 0.632899 1:-79493999 None:intergenic
AAAATTAAGGAAGCAGCAGG+TGG 0.633111 1:+79496753 MsG0180004554.01.T01:CDS
AAGAGAAGGAAGTTGTCGCA+CGG 0.636464 1:+79495600 MsG0180004554.01.T01:CDS
TTGAGGCTGCTACAAATGAT+GGG 0.647883 1:-79494061 None:intergenic
GTGATGGCAGGCGTACGAGG+TGG 0.650800 1:+79496991 MsG0180004554.01.T01:CDS
TCAAGATGTCATGGAACCTG+AGG 0.659148 1:+79494285 MsG0180004554.01.T01:CDS
TGACATCTTGAAACTCAGGT+GGG 0.665257 1:-79494273 None:intergenic
TGGGGACAGAGCAAAAGAGA+AGG 0.666086 1:+79495586 MsG0180004554.01.T01:CDS
TCGGGTGAAGATAAAGCAGG+TGG 0.694918 1:-79494178 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAATACAAAATCTA+AGG - Chr1:79495941-79495960 None:intergenic 10.0%
!! ACAATACAATACAAAATCTA+AGG - Chr1:79495974-79495993 None:intergenic 20.0%
!! ATATATGTTAGTGCATAATA+AGG - Chr1:79495678-79495697 None:intergenic 20.0%
!! ATTAGAAAACCTTCTTTATA+TGG - Chr1:79496920-79496939 None:intergenic 20.0%
!! TAAATAAGAAAGAAACCAAA+TGG - Chr1:79496024-79496043 None:intergenic 20.0%
!! TGCAAGATCAATAAAAATTA+AGG + Chr1:79496740-79496759 MsG0180004554.01.T01:CDS 20.0%
!! TTACAAGATTGAAATTCAAA+AGG + Chr1:79495121-79495140 MsG0180004554.01.T01:intron 20.0%
!! TTATTGTACTAGAATGATAA+TGG + Chr1:79493941-79493960 MsG0180004554.01.T01:five_prime_UTR 20.0%
!! TTTAATATTGAGTTATCATC+TGG + Chr1:79496040-79496059 MsG0180004554.01.T01:intron 20.0%
!!! ACATACTATTTCTATGAATT+TGG + Chr1:79496946-79496965 MsG0180004554.01.T01:CDS 20.0%
!!! TTGTTCTAAGTTTATCTTTA+TGG + Chr1:79496580-79496599 MsG0180004554.01.T01:intron 20.0%
!!! TTTTTGTTACATTTAGATGA+TGG - Chr1:79495301-79495320 None:intergenic 20.0%
! AAACACTTCTAATACTGTAT+TGG + Chr1:79495172-79495191 MsG0180004554.01.T01:intron 25.0%
! AAATAAGTGTTTATCCAAAG+AGG + Chr1:79494485-79494504 MsG0180004554.01.T01:intron 25.0%
! AACACTTATTTGCAACTTAT+AGG - Chr1:79494476-79494495 None:intergenic 25.0%
! AATAAGTGTTTATCCAAAGA+GGG + Chr1:79494486-79494505 MsG0180004554.01.T01:intron 25.0%
! AATACAATCCAATGAGAATT+TGG - Chr1:79495235-79495254 None:intergenic 25.0%
! ACTAAAATCCTACAAAGTAA+CGG - Chr1:79495549-79495568 None:intergenic 25.0%
! AGTTCTTGAAAGCAAATAAA+AGG - Chr1:79496088-79496107 None:intergenic 25.0%
! ATCATAGCTAAGAACAAATT+TGG - Chr1:79494962-79494981 None:intergenic 25.0%
! GGTTGAAAATTTATGCATAA+TGG - Chr1:79495857-79495876 None:intergenic 25.0%
! TACATATTCTTCATTGTAGT+AGG + Chr1:79496468-79496487 MsG0180004554.01.T01:intron 25.0%
! TGAAAATTTATGCATAATGG+AGG - Chr1:79495854-79495873 None:intergenic 25.0%
! TGTTGAATGATCTATAAAAG+AGG - Chr1:79494790-79494809 None:intergenic 25.0%
! TTCATGTAAGTTATAACTTG+TGG - Chr1:79494390-79494409 None:intergenic 25.0%
!! AAAGAAGGTTTTCTAATTTC+AGG + Chr1:79496923-79496942 MsG0180004554.01.T01:intron 25.0%
!! ATTTTCAATGCTAGAAAGAA+TGG - Chr1:79494206-79494225 None:intergenic 25.0%
!! GAAAATTTATGCATAATGGA+GGG - Chr1:79495853-79495872 None:intergenic 25.0%
!! TATGCATAAATTTTCAACCA+TGG + Chr1:79495858-79495877 MsG0180004554.01.T01:intron 25.0%
!!! TGTTAGTTTTCTGTTAATTG+AGG - Chr1:79495335-79495354 None:intergenic 25.0%
!!! TTTTTCTTGTTATAAGCTCA+AGG + Chr1:79496441-79496460 MsG0180004554.01.T01:intron 25.0%
AAACCAAGAATTAGAAGGAA+AGG - Chr1:79496668-79496687 None:intergenic 30.0%
AAATGGCAAACAATGAACAA+AGG - Chr1:79496007-79496026 None:intergenic 30.0%
AACCAAGAATTAGAAGGAAA+GGG - Chr1:79496667-79496686 None:intergenic 30.0%
AACTTATAGGACAAGGATAA+GGG - Chr1:79494463-79494482 None:intergenic 30.0%
ACAAGTTATCCAAGAAAAGA+AGG + Chr1:79496869-79496888 MsG0180004554.01.T01:intron 30.0%
AGGAAAAACCAAATTCTCAT+TGG + Chr1:79495224-79495243 MsG0180004554.01.T01:intron 30.0%
AGGAAAAGTTTGCAATAAGA+AGG - Chr1:79496068-79496087 None:intergenic 30.0%
AGGTTTAAATTGACAAAGCA+GGG - Chr1:79494770-79494789 None:intergenic 30.0%
ATAAAAATTAAGGAAGCAGC+AGG + Chr1:79496750-79496769 MsG0180004554.01.T01:CDS 30.0%
ATAATCGTTATGAGCAATGA+AGG - Chr1:79495097-79495116 None:intergenic 30.0%
ATAGATCATTCAACAAGTCT+CGG + Chr1:79494795-79494814 MsG0180004554.01.T01:intron 30.0%
CACTAACATATATGTTCAGA+AGG + Chr1:79495685-79495704 MsG0180004554.01.T01:intron 30.0%
CATTTACGTAACGAAATGAT+GGG - Chr1:79496621-79496640 None:intergenic 30.0%
CTTTCAATCACAATTTCCTA+GGG + Chr1:79494329-79494348 MsG0180004554.01.T01:intron 30.0%
GCTGCAAAATTATTTATTCC+AGG + Chr1:79496526-79496545 MsG0180004554.01.T01:CDS 30.0%
TAATAAGGAAGTAGGAAGTT+AGG - Chr1:79495663-79495682 None:intergenic 30.0%
TAATCGTTATGAGCAATGAA+GGG - Chr1:79495096-79495115 None:intergenic 30.0%
TATTTGCAACTTATAGGACA+AGG - Chr1:79494470-79494489 None:intergenic 30.0%
TCATTGCTCATAACGATTAT+AGG + Chr1:79495097-79495116 MsG0180004554.01.T01:intron 30.0%
TCATTTACGTAACGAAATGA+TGG - Chr1:79496622-79496641 None:intergenic 30.0%
TCTTTCAATCACAATTTCCT+AGG + Chr1:79494328-79494347 MsG0180004554.01.T01:intron 30.0%
TTAGTGCATAATAAGGAAGT+AGG - Chr1:79495671-79495690 None:intergenic 30.0%
TTATCCAAGAAAAGAAGGTT+TGG + Chr1:79496874-79496893 MsG0180004554.01.T01:intron 30.0%
TTCCTTCTAATTCTTGGTTT+CGG + Chr1:79496668-79496687 MsG0180004554.01.T01:intron 30.0%
TTTGTTCATTGTTTGCCATT+TGG + Chr1:79496006-79496025 MsG0180004554.01.T01:intron 30.0%
! AATGCTAGAAAGAATGGATT+CGG - Chr1:79494200-79494219 None:intergenic 30.0%
! AGTTTTCTGTTAATTGAGGT+TGG - Chr1:79495331-79495350 None:intergenic 30.0%
! CAGTCTCATGCAAATAATTT+TGG + Chr1:79494516-79494535 MsG0180004554.01.T01:intron 30.0%
! CTGTTCTGAATGTTATTACT+CGG + Chr1:79495745-79495764 MsG0180004554.01.T01:CDS 30.0%
! TATTTGCATGAGACTGATTT+AGG - Chr1:79494512-79494531 None:intergenic 30.0%
! TGTTCTGAATGTTATTACTC+GGG + Chr1:79495746-79495765 MsG0180004554.01.T01:CDS 30.0%
! TTTATCTTCCGTTACTTTGT+AGG + Chr1:79495538-79495557 MsG0180004554.01.T01:intron 30.0%
!! AGAAGCATCAATCAAACAAT+AGG - Chr1:79494929-79494948 None:intergenic 30.0%
!! ATTATGGTTGATTTTCACCA+TGG + Chr1:79494704-79494723 MsG0180004554.01.T01:intron 30.0%
!!! CATGCAAATAATTTTGGTTG+TGG + Chr1:79494522-79494541 MsG0180004554.01.T01:intron 30.0%
!!! TTTTGAGATGATGAAGGATT+TGG - Chr1:79494038-79494057 None:intergenic 30.0%
AAATACCAAACACTAAGCCA+TGG - Chr1:79495878-79495897 None:intergenic 35.0%
AATCGTTATGAGCAATGAAG+GGG - Chr1:79495095-79495114 None:intergenic 35.0%
ACAGCACATCCATATAAAGA+AGG + Chr1:79496908-79496927 MsG0180004554.01.T01:intron 35.0%
ACCTATGCATTCACATTACA+TGG - Chr1:79495914-79495933 None:intergenic 35.0%
AGAATTGAATGTAGTACCTC+AGG - Chr1:79494304-79494323 None:intergenic 35.0%
AGTTCTTGAAGACATAAGCA+AGG - Chr1:79496151-79496170 None:intergenic 35.0%
ATCTATGTTAGAGTGACTTG+AGG - Chr1:79496400-79496419 None:intergenic 35.0%
ATGTCTTCAAGAACTTAGGT+TGG + Chr1:79496156-79496175 MsG0180004554.01.T01:intron 35.0%
ATTGAACTCCCATACATAGT+AGG + Chr1:79494885-79494904 MsG0180004554.01.T01:intron 35.0%
CAACTTATAGGACAAGGATA+AGG - Chr1:79494464-79494483 None:intergenic 35.0%
GAGAATTTACAAATTGCACC+TGG - Chr1:79496547-79496566 None:intergenic 35.0%
GAGGTTTAAATTGACAAAGC+AGG - Chr1:79494771-79494790 None:intergenic 35.0%
GCAAAGTTCTTTCTTGAGTT+GGG + Chr1:79494735-79494754 MsG0180004554.01.T01:intron 35.0%
GCTTATGTCTTCAAGAACTT+AGG + Chr1:79496152-79496171 MsG0180004554.01.T01:intron 35.0%
GGGAAATGTGGATAAAAGAA+TGG - Chr1:79493990-79494009 None:intergenic 35.0%
GTAATGTGAATGCATAGGTT+TGG + Chr1:79495915-79495934 MsG0180004554.01.T01:intron 35.0%
GTCATAACTACGAGTAATGA+TGG + Chr1:79495260-79495279 MsG0180004554.01.T01:intron 35.0%
TAGATCATTCAACAAGTCTC+GGG + Chr1:79494796-79494815 MsG0180004554.01.T01:intron 35.0%
TCATCTCTAGCAGCTAATTA+TGG + Chr1:79494688-79494707 MsG0180004554.01.T01:intron 35.0%
TCCATGTAATGTGAATGCAT+AGG + Chr1:79495910-79495929 MsG0180004554.01.T01:intron 35.0%
TCGAATAAGTCAATCCAAAC+AGG - Chr1:79494355-79494374 None:intergenic 35.0%
TCTTCTTGTATCCCTTTAAC+AGG - Chr1:79495059-79495078 None:intergenic 35.0%
TGATCTGTCTAATGAACTGT+TGG + Chr1:79495444-79495463 MsG0180004554.01.T01:intron 35.0%
TGCAAAGTTCTTTCTTGAGT+TGG + Chr1:79494734-79494753 MsG0180004554.01.T01:intron 35.0%
TGCTTTCAAGAACTTAGACT+GGG + Chr1:79496094-79496113 MsG0180004554.01.T01:intron 35.0%
TGTCTTCAAGAACTTAGGTT+GGG + Chr1:79496157-79496176 MsG0180004554.01.T01:intron 35.0%
TTATCCACATTTCCCAAACT+TGG + Chr1:79493995-79494014 MsG0180004554.01.T01:CDS 35.0%
TTCCCTTTCCTTCTAATTCT+TGG + Chr1:79496662-79496681 MsG0180004554.01.T01:intron 35.0%
TTGCTTTCAAGAACTTAGAC+TGG + Chr1:79496093-79496112 MsG0180004554.01.T01:intron 35.0%
TTTGTCATCGCTAAAGACAA+TGG - Chr1:79494612-79494631 None:intergenic 35.0%
! ATGCTAGAAAGAATGGATTC+GGG - Chr1:79494199-79494218 None:intergenic 35.0%
! TAATTTTGCAGCATCCTTCA+AGG - Chr1:79496518-79496537 None:intergenic 35.0%
! TAGACCAAACCTTCTTTTCT+TGG - Chr1:79496881-79496900 None:intergenic 35.0%
!! ACTTTGTAGGATTTTAGTGC+CGG + Chr1:79495551-79495570 MsG0180004554.01.T01:intron 35.0%
AAAATTAAGGAAGCAGCAGG+TGG + Chr1:79496753-79496772 MsG0180004554.01.T01:CDS 40.0%
AAGTTTGGAGAATGAGGTTG+CGG - Chr1:79494114-79494133 None:intergenic 40.0%
AATGCCAAGTTTGGGAAATG+TGG - Chr1:79494002-79494021 None:intergenic 40.0%
ACCTGAGTTTCAAGATGTCA+TGG + Chr1:79494276-79494295 MsG0180004554.01.T01:CDS 40.0%
ATGACATCTTGAAACTCAGG+TGG - Chr1:79494277-79494296 None:intergenic 40.0%
ATGTCTTCAAGAACTTAGGC+TGG + Chr1:79496219-79496238 MsG0180004554.01.T01:intron 40.0%
CACCGAAACCAAGAATTAGA+AGG - Chr1:79496673-79496692 None:intergenic 40.0%
CAGGTGACAATTACAGATCT+TGG - Chr1:79495005-79495024 None:intergenic 40.0%
CGAAACCATCACCATAGAAA+CGG - Chr1:79494243-79494262 None:intergenic 40.0%
CGCAAATCAAGACATAAGCA+AGG - Chr1:79496277-79496296 None:intergenic 40.0%
CTAGGGTATGTTTGAATTGG+TGG + Chr1:79494637-79494656 MsG0180004554.01.T01:intron 40.0%
CTTGAGGCATAAAAACCCAA+TGG - Chr1:79496384-79496403 None:intergenic 40.0%
GCACTAGGGTATGTTTGAAT+TGG + Chr1:79494634-79494653 MsG0180004554.01.T01:intron 40.0%
GCAGACTAATGACAAATCGA+GGG + Chr1:79495198-79495217 MsG0180004554.01.T01:intron 40.0%
GCATTCACATTACATGGACT+TGG - Chr1:79495908-79495927 None:intergenic 40.0%
GCATTGAAAATACCAGTTCC+TGG + Chr1:79494215-79494234 MsG0180004554.01.T01:CDS 40.0%
GCTTAAACTCACCTTCTTAG+AGG + Chr1:79495779-79495798 MsG0180004554.01.T01:CDS 40.0%
GGGCTTACGTATAAGATGTT+TGG - Chr1:79494443-79494462 None:intergenic 40.0%
GTAGAGAAGTTTGGAGAATG+AGG - Chr1:79494120-79494139 None:intergenic 40.0%
GTCCCCATAAAGATTCATTC+CGG - Chr1:79495573-79495592 None:intergenic 40.0%
GTGCCGGAATGAATCTTTAT+GGG + Chr1:79495567-79495586 MsG0180004554.01.T01:CDS 40.0%
TAATGACAAATCGAGGGAGA+AGG + Chr1:79495204-79495223 MsG0180004554.01.T01:intron 40.0%
TAGAGGTAATCAGACAGTCA+AGG + Chr1:79495796-79495815 MsG0180004554.01.T01:intron 40.0%
TAGCTATGATTCCATGCACA+TGG + Chr1:79494972-79494991 MsG0180004554.01.T01:intron 40.0%
TAGTAGGCTCAGGATATAAC+TGG + Chr1:79496484-79496503 MsG0180004554.01.T01:intron 40.0%
TCCATGACATCTTGAAACTC+AGG - Chr1:79494280-79494299 None:intergenic 40.0%
TCTCTATGCTATCTCTTCGA+TGG + Chr1:79493964-79493983 MsG0180004554.01.T01:exon 40.0%
TGACATCTTGAAACTCAGGT+GGG - Chr1:79494276-79494295 None:intergenic 40.0%
TGCAGACTAATGACAAATCG+AGG + Chr1:79495197-79495216 MsG0180004554.01.T01:intron 40.0%
TGCCGGAATGAATCTTTATG+GGG + Chr1:79495568-79495587 MsG0180004554.01.T01:CDS 40.0%
TGTGTATGTATCAGTGCCAT+TGG + Chr1:79496365-79496384 MsG0180004554.01.T01:intron 40.0%
TTCAACCATGGCTTAGTGTT+TGG + Chr1:79495870-79495889 MsG0180004554.01.T01:intron 40.0%
TTCTTCATTGTAGTAGGCTC+AGG + Chr1:79496474-79496493 MsG0180004554.01.T01:intron 40.0%
TTGAGGCTGCTACAAATGAT+GGG - Chr1:79494064-79494083 None:intergenic 40.0%
TTTGCCCAAAATGTACATGC+AGG + Chr1:79496699-79496718 MsG0180004554.01.T01:intron 40.0%
! AGTGCCGGAATGAATCTTTA+TGG + Chr1:79495566-79495585 MsG0180004554.01.T01:CDS 40.0%
! CTGTCTGATTACCTCTAAGA+AGG - Chr1:79495793-79495812 None:intergenic 40.0%
! GTATTGGCAATGCCAAGTTT+GGG - Chr1:79494010-79494029 None:intergenic 40.0%
! GTGTATGTATCAGTGCCATT+GGG + Chr1:79496366-79496385 MsG0180004554.01.T01:intron 40.0%
!! ATTGGTGGTGTAGTCTAGTT+AGG + Chr1:79494652-79494671 MsG0180004554.01.T01:intron 40.0%
!! GAAGGATTTGGTGTTGGTAT+TGG - Chr1:79494026-79494045 None:intergenic 40.0%
!! GATGATGAAGGATTTGGTGT+TGG - Chr1:79494032-79494051 None:intergenic 40.0%
!! TTGGTGGTGTAGTCTAGTTA+GGG + Chr1:79494653-79494672 MsG0180004554.01.T01:intron 40.0%
!!! GGGTACTTTTGAGATGATGA+AGG - Chr1:79494044-79494063 None:intergenic 40.0%
AACTCCCATACATAGTAGGC+TGG + Chr1:79494889-79494908 MsG0180004554.01.T01:intron 45.0%
AAGAGAAGGAAGTTGTCGCA+CGG + Chr1:79495600-79495619 MsG0180004554.01.T01:CDS 45.0%
AATGCCCAGCCTACTATGTA+TGG - Chr1:79494897-79494916 None:intergenic 45.0%
ACAAGCCAAGGCCTGTTAAA+GGG + Chr1:79495045-79495064 MsG0180004554.01.T01:intron 45.0%
ACAATTTCCTAGGGCCTGTT+TGG + Chr1:79494338-79494357 MsG0180004554.01.T01:intron 45.0%
ACACACGCACATGTTCTTCT+TGG - Chr1:79496344-79496363 None:intergenic 45.0%
ACTCCCATACATAGTAGGCT+GGG + Chr1:79494890-79494909 MsG0180004554.01.T01:intron 45.0%
AGCAGCAGAGTAGAGAAGTT+TGG - Chr1:79494129-79494148 None:intergenic 45.0%
AGCGATGACAAACTGCACTA+GGG + Chr1:79494620-79494639 MsG0180004554.01.T01:intron 45.0%
AGTTCCTGGTACCGTTTCTA+TGG + Chr1:79494229-79494248 MsG0180004554.01.T01:CDS 45.0%
ATAGAAACGGTACCAGGAAC+TGG - Chr1:79494230-79494249 None:intergenic 45.0%
ATCACCATAGAAACGGTACC+AGG - Chr1:79494236-79494255 None:intergenic 45.0%
ATGCCCAGCCTACTATGTAT+GGG - Chr1:79494896-79494915 None:intergenic 45.0%
CACGGTTTGTATCTTCAGAC+GGG + Chr1:79495618-79495637 MsG0180004554.01.T01:CDS 45.0%
CCCAAAATGTACATGCAGGA+GGG + Chr1:79496703-79496722 MsG0180004554.01.T01:intron 45.0%
CTGTAATTGTCACCTGCCAA+GGG + Chr1:79495009-79495028 MsG0180004554.01.T01:intron 45.0%
GAACTTTGCAAACGCAACCA+TGG - Chr1:79494724-79494743 None:intergenic 45.0%
GAAGGTGAGTTTAAGCTGAC+TGG - Chr1:79495775-79495794 None:intergenic 45.0%
GATAAAGCAGGTGGTAGTTG+AGG - Chr1:79494172-79494191 None:intergenic 45.0%
GATTCGGGTGAAGATAAAGC+AGG - Chr1:79494184-79494203 None:intergenic 45.0%
GCACGGTTTGTATCTTCAGA+CGG + Chr1:79495617-79495636 MsG0180004554.01.T01:CDS 45.0%
GTCTCGGGTAATAGATGACT+CGG + Chr1:79494811-79494830 MsG0180004554.01.T01:intron 45.0%
GTTGAGGCTGCTACAAATGA+TGG - Chr1:79494065-79494084 None:intergenic 45.0%
TACAAGCCAAGGCCTGTTAA+AGG + Chr1:79495044-79495063 MsG0180004554.01.T01:intron 45.0%
TAGCGATGACAAACTGCACT+AGG + Chr1:79494619-79494638 MsG0180004554.01.T01:intron 45.0%
TCAAGATGTCATGGAACCTG+AGG + Chr1:79494285-79494304 MsG0180004554.01.T01:CDS 45.0%
TCTCGGGTAATAGATGACTC+GGG + Chr1:79494812-79494831 MsG0180004554.01.T01:intron 45.0%
TCTGTAATTGTCACCTGCCA+AGG + Chr1:79495008-79495027 MsG0180004554.01.T01:intron 45.0%
TGAGACACAAGTACAAGCCA+AGG + Chr1:79495033-79495052 MsG0180004554.01.T01:intron 45.0%
TGATCTGCACTTAGCAGTGA+TGG + Chr1:79496975-79496994 MsG0180004554.01.T01:CDS 45.0%
TGGTACCGTTTCTATGGTGA+TGG + Chr1:79494235-79494254 MsG0180004554.01.T01:CDS 45.0%
TGTATCCCTTTAACAGGCCT+TGG - Chr1:79495053-79495072 None:intergenic 45.0%
! AACTGGTTTAGCCTCCTTGA+AGG + Chr1:79496501-79496520 MsG0180004554.01.T01:CDS 45.0%
! ACCCTCCTGCATGTACATTT+TGG - Chr1:79496707-79496726 None:intergenic 45.0%
! ACTTCTCTACTCTGCTGCTT+TGG + Chr1:79494130-79494149 MsG0180004554.01.T01:CDS 45.0%
! AGACTGATTTAGGCCCTCTT+TGG - Chr1:79494502-79494521 None:intergenic 45.0%
! CCCTCCTGCATGTACATTTT+GGG - Chr1:79496706-79496725 None:intergenic 45.0%
! TTTTGCAGCATCCTTCAAGG+AGG - Chr1:79496515-79496534 None:intergenic 45.0%
!! GGTATTGGCAATGCCAAGTT+TGG - Chr1:79494011-79494030 None:intergenic 45.0%
!! TGGTGGTGTTGTTGTTGTTG+AGG - Chr1:79494081-79494100 None:intergenic 45.0%
AGTCAATCCAAACAGGCCCT+AGG - Chr1:79494348-79494367 None:intergenic 50.0%
GACTCGGGCAGTGATTTCTT+TGG + Chr1:79494827-79494846 MsG0180004554.01.T01:intron 50.0%
GCCCAAAATGTACATGCAGG+AGG + Chr1:79496702-79496721 MsG0180004554.01.T01:intron 50.0%
TCGGGTGAAGATAAAGCAGG+TGG - Chr1:79494181-79494200 None:intergenic 50.0%
TGGGGACAGAGCAAAAGAGA+AGG + Chr1:79495586-79495605 MsG0180004554.01.T01:CDS 50.0%
TGTACTTGTGTCTCAGCCCT+TGG - Chr1:79495028-79495047 None:intergenic 50.0%
TTGGAAGAGAGCCATGTGCA+TGG - Chr1:79494986-79495005 None:intergenic 50.0%
! AGGAAGCAGCAGGTGGTTTT+AGG + Chr1:79496760-79496779 MsG0180004554.01.T01:CDS 50.0%
AATGAGGTTGCGGCGTTTGG+AGG - Chr1:79494104-79494123 None:intergenic 55.0%
CTGCACTTAGCAGTGATGGC+AGG + Chr1:79496979-79496998 MsG0180004554.01.T01:CDS 55.0%
GAGAATGAGGTTGCGGCGTT+TGG - Chr1:79494107-79494126 None:intergenic 55.0%
CTTGTGTCTCAGCCCTTGGC+AGG - Chr1:79495024-79495043 None:intergenic 60.0%
GAGGTTGCGGCGTTTGGAGG+TGG - Chr1:79494101-79494120 None:intergenic 65.0%
GCAGTGATGGCAGGCGTACG+AGG + Chr1:79496988-79497007 MsG0180004554.01.T01:CDS 65.0%
GGCAGGCGTACGAGGTGGAA+AGG + Chr1:79496996-79497015 MsG0180004554.01.T01:CDS 65.0%
GTGATGGCAGGCGTACGAGG+TGG + Chr1:79496991-79497010 MsG0180004554.01.T01:CDS 65.0%
GTTGCGGCGTTTGGAGGTGG+TGG - Chr1:79494098-79494117 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 79493935 79497041 79493935 ID=MsG0180004554.01;Name=MsG0180004554.01
Chr1 mRNA 79493935 79497041 79493935 ID=MsG0180004554.01.T01;Parent=MsG0180004554.01;Name=MsG0180004554.01.T01;_AED=0.50;_eAED=0.51;_QI=48|0.8|0.83|1|0.4|0.5|6|0|232
Chr1 exon 79493935 79494306 79493935 ID=MsG0180004554.01.T01:exon:45647;Parent=MsG0180004554.01.T01
Chr1 exon 79495560 79495639 79495560 ID=MsG0180004554.01.T01:exon:45648;Parent=MsG0180004554.01.T01
Chr1 exon 79495740 79495800 79495740 ID=MsG0180004554.01.T01:exon:45649;Parent=MsG0180004554.01.T01
Chr1 exon 79496490 79496547 79496490 ID=MsG0180004554.01.T01:exon:45650;Parent=MsG0180004554.01.T01
Chr1 exon 79496721 79496781 79496721 ID=MsG0180004554.01.T01:exon:45651;Parent=MsG0180004554.01.T01
Chr1 exon 79496927 79497041 79496927 ID=MsG0180004554.01.T01:exon:45652;Parent=MsG0180004554.01.T01
Chr1 five_prime_UTR 79493935 79493982 79493935 ID=MsG0180004554.01.T01:five_prime_utr;Parent=MsG0180004554.01.T01
Chr1 CDS 79493983 79494306 79493983 ID=MsG0180004554.01.T01:cds;Parent=MsG0180004554.01.T01
Chr1 CDS 79495560 79495639 79495560 ID=MsG0180004554.01.T01:cds;Parent=MsG0180004554.01.T01
Chr1 CDS 79495740 79495800 79495740 ID=MsG0180004554.01.T01:cds;Parent=MsG0180004554.01.T01
Chr1 CDS 79496490 79496547 79496490 ID=MsG0180004554.01.T01:cds;Parent=MsG0180004554.01.T01
Chr1 CDS 79496721 79496781 79496721 ID=MsG0180004554.01.T01:cds;Parent=MsG0180004554.01.T01
Chr1 CDS 79496927 79497041 79496927 ID=MsG0180004554.01.T01:cds;Parent=MsG0180004554.01.T01
Gene Sequence

>MsG0180004554.01.T01

ATGGCCATTCTTTTATCCACATTTCCCAAACTTGGCATTGCCAATACCAACACCAAATCCTTCATCATCTCAAAAGTACCCATCATTTGTAGCAGCCTCAACAACAACAACACCACCACCTCCAAACGCCGCAACCTCATTCTCCAAACTTCTCTACTCTGCTGCTTTGGCATTTCTTCTCTGACTCCTCAACTACCACCTGCTTTATCTTCACCCGAATCCATTCTTTCTAGCATTGAAAATACCAGTTCCTGGTACCGTTTCTATGGTGATGGTTTCGCTATTCGAGTCCCACCTGAGTTTCAAGATGTCATGGAACCTGAGGATTTTAGTGCCGGAATGAATCTTTATGGGGACAGAGCAAAAGAGAAGGAAGTTGTCGCACGGTTTGTATCTTCAGACGGATTAGCTGTTCTGAATGTTATTACTCGGGTGACCAGTCAGCTTAAACTCACCTTCTTAGAGGCTCAGGATATAACTGGTTTAGCCTCCTTGAAGGATGCTGCAAAATTATTTATTCCAGGAGGGTCAAAAGTTTACTCTGCAAGATCAATAAAAATTAAGGAAGCAGCAGGTGGTTTTAGAAGGTTTTCTAATTTCAGGACATACTATTTCTATGAATTTGGTAAAGATGATCTGCACTTAGCAGTGATGGCAGGCGTACGAGGTGGAAAGGTTTGTTACTGTGCATTTTACTAA

Protein sequence

>MsG0180004554.01.T01

MAILLSTFPKLGIANTNTKSFIISKVPIICSSLNNNNTTTSKRRNLILQTSLLCCFGISSLTPQLPPALSSPESILSSIENTSSWYRFYGDGFAIRVPPEFQDVMEPEDFSAGMNLYGDRAKEKEVVARFVSSDGLAVLNVITRVTSQLKLTFLEAQDITGLASLKDAAKLFIPGGSKVYSARSIKIKEAAGGFRRFSNFRTYYFYEFGKDDLHLAVMAGVRGGKVCYCAFY*