AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030477.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030477.01.T01 MTR_6g007607 85.590 229 3 2 69 267 67 295 1.62e-129 379
MsG0680030477.01.T01 MTR_6g007607 86.364 110 13 1 248 357 339 446 1.98e-55 188
MsG0680030477.01.T01 MTR_6g007610 88.235 68 8 0 1 68 172 239 1.19e-34 127
MsG0680030477.01.T01 MTR_6g007633 68.254 63 19 1 1 62 165 227 1.26e-22 95.5
MsG0680030477.01.T01 MTR_6g007623 68.333 60 19 0 1 60 162 221 3.20e-22 94.4
MsG0680030477.01.T01 MTR_6g007637 67.925 53 17 0 1 53 166 218 3.98e-16 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030477.01.T01 AT3G01480 64.683 252 55 4 50 267 26 277 4.07e-106 315
MsG0680030477.01.T01 AT3G01480 64.683 252 55 4 50 267 26 277 1.09e-104 315
MsG0680030477.01.T01 AT3G01480 90.000 90 9 0 268 357 339 428 6.84e-49 170
MsG0680030477.01.T01 AT5G62850 50.000 60 28 2 1 60 165 222 8.08e-11 62.0

Find 98 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGATAGTCTCAAGATTTC+TGG 0.168643 6:+3456522 MsG0680030477.01.T01:CDS
TCTTTGGCTATCTTTCTTAA+TGG 0.190188 6:+3453100 MsG0680030477.01.T01:CDS
GAATCCATTCAAGTTGTTTC+TGG 0.214909 6:+3459103 MsG0680030477.01.T01:CDS
CTGGCTCTAGCCAAGTATTT+TGG 0.227149 6:+3458957 MsG0680030477.01.T01:CDS
AACAGAAAATGAAGATTTCT+TGG 0.254187 6:+3459054 MsG0680030477.01.T01:CDS
ACGAAATTGCCGGCAGTTAC+AGG 0.259328 6:-3457796 None:intergenic
CATGTCATTCTTGCTCTCTT+TGG 0.260527 6:+3453084 None:intergenic
AAGCTTCCGTTTAATGCATT+TGG 0.279608 6:+3458786 MsG0680030477.01.T01:CDS
GGTAAGACATTAATTATATC+AGG 0.285722 6:+3456864 MsG0680030477.01.T01:CDS
AATGCCCCAGGGTCCTTAAT+TGG 0.285824 6:-3456432 None:intergenic
GATATCTGGACCGCCAATTA+AGG 0.287928 6:+3456419 MsG0680030477.01.T01:CDS
AACACACATTCCTCTAAGTT+TGG 0.307872 6:-3457745 None:intergenic
CTTAACTGAATGCCAGATTC+TGG 0.308434 6:-3459266 None:intergenic
CATTCAAGTTGTTTCTGGTT+TGG 0.322297 6:+3459108 MsG0680030477.01.T01:CDS
GATCTGTCTGTATTGATATC+TGG 0.326137 6:+3456405 MsG0680030477.01.T01:CDS
CTTTCAATAAAGGCAAATTT+CGG 0.340786 6:-3457681 None:intergenic
GTTCGACCTTCAATGGTTAC+TGG 0.341576 6:+3459225 MsG0680030477.01.T01:three_prime_UTR
TCCAAGCAATGCCAACATAT+TGG 0.345818 6:+3459003 MsG0680030477.01.T01:CDS
TGGTCTTCCTATTGACAATA+AGG 0.348536 6:+3456464 MsG0680030477.01.T01:CDS
CTTTCAATAGCCAAAATACT+TGG 0.354242 6:-3458967 None:intergenic
AGATTTCTTGGCAGACCTTA+AGG 0.363446 6:+3459066 MsG0680030477.01.T01:CDS
TCCAATATGTTGGCATTGCT+TGG 0.366720 6:-3459004 None:intergenic
ACGTGTAGTTCGACCTTCAA+TGG 0.376716 6:+3459218 MsG0680030477.01.T01:three_prime_UTR
GCTGCTCTCCCTTTCAATAA+AGG 0.380271 6:-3457691 None:intergenic
CCTGGGGCATTGTTGAGATA+TGG 0.383495 6:+3456444 MsG0680030477.01.T01:CDS
AGCTACAAGATTGCTGGTTA+AGG 0.387705 6:+3459147 MsG0680030477.01.T01:three_prime_UTR
TATTCCTCAGGCACTTCATA+TGG 0.401247 6:-3457658 None:intergenic
GTGTTCCACATAGTTCTTGA+TGG 0.404241 6:+3457763 MsG0680030477.01.T01:CDS
CTTGCGGTCGGGTTAATAAC+AGG 0.406077 6:+3456327 MsG0680030477.01.T01:CDS
ACAGACAGATCAGGTAAAAC+GGG 0.410541 6:-3456393 None:intergenic
GTCTTGTTTGGACAGGAGCT+TGG 0.412150 6:+3458744 MsG0680030477.01.T01:intron
TAATGTCTTACCTTGCTTGA+GGG 0.412765 6:-3456853 None:intergenic
CGAAATTTGCCTTTATTGAA+AGG 0.414245 6:+3457682 MsG0680030477.01.T01:CDS
ATTGTTCCAAATGCATTAAA+CGG 0.417987 6:-3458792 None:intergenic
TACCAAGTCAACGAAATTGC+CGG 0.421378 6:-3457806 None:intergenic
CTATGACATCACCAACCTTA+AGG 0.424481 6:-3459081 None:intergenic
CTAATCGCCTTATTGTCAAT+AGG 0.425706 6:-3456471 None:intergenic
GTTGAAGAAGACATGGTTGA+TGG 0.437254 6:+3457631 MsG0680030477.01.T01:CDS
AACCCCAGCTACAAGATTGC+TGG 0.439725 6:+3459141 MsG0680030477.01.T01:exon
AATGGTATTGGTGCAATCTC+AGG 0.439779 6:+3453304 MsG0680030477.01.T01:CDS
TAAAGACAATCCAAACTTAG+AGG 0.442062 6:+3457735 MsG0680030477.01.T01:CDS
TTTCAGGTCAGCAATGGTAT+TGG 0.442161 6:+3453292 MsG0680030477.01.T01:intron
CCCCTTCGACATTTATCTCC+TGG 0.445613 6:+3453153 MsG0680030477.01.T01:CDS
AATTGAACTGCTTGATAAGC+TGG 0.446258 6:+3456914 MsG0680030477.01.T01:CDS
ATAACAGGAGTTCCTACGTT+GGG 0.448584 6:+3456342 MsG0680030477.01.T01:CDS
GAAATTTGCCTTTATTGAAA+GGG 0.449247 6:+3457683 MsG0680030477.01.T01:CDS
ACTTCTCCAGTAACCATTGA+AGG 0.450527 6:-3459231 None:intergenic
TATCTTTAGCACTTGCGGTC+GGG 0.451823 6:+3456316 MsG0680030477.01.T01:CDS
TACAGACAGATCAGGTAAAA+CGG 0.453010 6:-3456394 None:intergenic
CAAACCAGAAACAACTTGAA+TGG 0.457875 6:-3459107 None:intergenic
TTAACCAGCAATCTTGTAGC+TGG 0.458375 6:-3459145 None:intergenic
GGCAAATTTCGGTATTCCTC+AGG 0.467429 6:-3457670 None:intergenic
ATATCTTTAGCACTTGCGGT+CGG 0.471409 6:+3456315 MsG0680030477.01.T01:CDS
GACCGCCAATTAAGGACCCT+GGG 0.483051 6:+3456427 MsG0680030477.01.T01:CDS
GAGAGCAGCTGTAGATATGA+AGG 0.486022 6:+3457705 MsG0680030477.01.T01:CDS
CGAAATTGCCGGCAGTTACA+GGG 0.488614 6:-3457795 None:intergenic
TCTTTCTTAATGGATTGTGT+TGG 0.498956 6:+3453110 MsG0680030477.01.T01:CDS
TAACCAGCAATCTTGTAGCT+GGG 0.498970 6:-3459144 None:intergenic
TGCCGGCAATTTCGTTGACT+TGG 0.499568 6:+3457804 MsG0680030477.01.T01:CDS
GATATCAATACAGACAGATC+AGG 0.523570 6:-3456402 None:intergenic
TTCTTGGCAGACCTTAAGGT+TGG 0.524531 6:+3459070 MsG0680030477.01.T01:CDS
TTAATGTCTTACCTTGCTTG+AGG 0.526720 6:-3456854 None:intergenic
AATCTGGCATTCAGTTAAGC+AGG 0.530790 6:+3459270 MsG0680030477.01.T01:three_prime_UTR
CCATATCTCAACAATGCCCC+AGG 0.533159 6:-3456444 None:intergenic
GTGAGGAAATTGTTGTATGT+AGG 0.536542 6:+3459367 MsG0680030477.01.T01:three_prime_UTR
TGCGATATCTTTAGCACTTG+CGG 0.541234 6:+3456311 MsG0680030477.01.T01:CDS
GTTTAATGCATTTGGAACAA+TGG 0.545136 6:+3458794 MsG0680030477.01.T01:CDS
CTGCAGTGTTGAAGAAGACA+TGG 0.547863 6:+3457624 MsG0680030477.01.T01:intron
CGTGCGCAATATTTAATAGC+CGG 0.561542 6:-3459183 None:intergenic
GGACCGCCAATTAAGGACCC+TGG 0.563001 6:+3456426 MsG0680030477.01.T01:CDS
ATATCTACCATCCAATATGT+TGG 0.565448 6:-3459014 None:intergenic
AACCAGCAATCTTGTAGCTG+GGG 0.567223 6:-3459143 None:intergenic
TAGGAATTTGAGGACAACTC+TGG 0.570773 6:+3458938 MsG0680030477.01.T01:intron
GCCCCAGGGTCCTTAATTGG+CGG 0.573398 6:-3456429 None:intergenic
TCTCAAGATTTCTGGAGTCA+AGG 0.574299 6:+3456530 MsG0680030477.01.T01:CDS
TGAATATTTCAGGTCAGCAA+TGG 0.574885 6:+3453286 MsG0680030477.01.T01:intron
TGCATTTGGAACAATGGCGA+TGG 0.578659 6:+3458800 MsG0680030477.01.T01:CDS
ACCAGGAGATAAATGTCGAA+GGG 0.578801 6:-3453154 None:intergenic
TACCAGGAGATAAATGTCGA+AGG 0.589197 6:-3453155 None:intergenic
CTGCTTGATAAGCTGGAAGC+TGG 0.592541 6:+3456921 MsG0680030477.01.T01:CDS
TATAATGCCCCTGTAACTGC+CGG 0.593137 6:+3457787 MsG0680030477.01.T01:CDS
TAACAGGAGTTCCTACGTTG+GGG 0.601545 6:+3456343 MsG0680030477.01.T01:CDS
AGCAATGCCAACATATTGGA+TGG 0.605476 6:+3459007 MsG0680030477.01.T01:CDS
TTAGCTGCATGTGCATCGTT+AGG 0.609497 6:-3456369 None:intergenic
CTATCAGTAATATCTTCAAG+TGG 0.619643 6:-3456507 None:intergenic
GCTGAATCAAAGAAAGAACA+TGG 0.621255 6:+3456891 MsG0680030477.01.T01:CDS
ACAGGAGCTTGGTCTATACA+AGG 0.622115 6:+3458755 MsG0680030477.01.T01:intron
TATAACCATCAAGAACTATG+TGG 0.626770 6:-3457768 None:intergenic
GCATCGCGAGCCCTCAAGCA+AGG 0.627145 6:+3456843 MsG0680030477.01.T01:CDS
GAAATTGCCGGCAGTTACAG+GGG 0.636838 6:-3457794 None:intergenic
CCAGGAGATAAATGTCGAAG+GGG 0.669863 6:-3453153 None:intergenic
TCGTTAGGCAACCCCAACGT+AGG 0.670788 6:-3456354 None:intergenic
AATAACAGGAGTTCCTACGT+TGG 0.693696 6:+3456341 MsG0680030477.01.T01:CDS
CATATCTCAACAATGCCCCA+GGG 0.697189 6:-3456443 None:intergenic
ATTTCCATATGAAGTGCCTG+AGG 0.702011 6:+3457654 MsG0680030477.01.T01:CDS
CAGACAGATCAGGTAAAACG+GGG 0.716037 6:-3456392 None:intergenic
ACCGCCAATTAAGGACCCTG+GGG 0.741296 6:+3456428 MsG0680030477.01.T01:CDS
TTGAAGGTCGAACTACACGT+CGG 0.795457 6:-3459215 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATTTTAACTTACTTAA+AGG - Chr6:3453830-3453849 None:intergenic 10.0%
!!! TAATTTTATACTTAACTTTT+TGG - Chr6:3459484-3459503 None:intergenic 10.0%
!!! TCATATTATATGTTTATTTT+TGG + Chr6:3453338-3453357 MsG0680030477.01.T01:CDS 10.0%
!! AAATTATATTGATCAAAAGA+TGG + Chr6:3453568-3453587 MsG0680030477.01.T01:intron 15.0%
!! AAATTTACTTGTAGTTAAAT+AGG + Chr6:3454385-3454404 MsG0680030477.01.T01:intron 15.0%
!! AGTAATTAACAATTAACAAT+GGG - Chr6:3453254-3453273 None:intergenic 15.0%
!! TAGTAATTAACAATTAACAA+TGG - Chr6:3453255-3453274 None:intergenic 15.0%
!! TATATAGATAATTAATTACC+AGG - Chr6:3453174-3453193 None:intergenic 15.0%
!! TTATTAAAGAAATAGCTTAT+AGG - Chr6:3458031-3458050 None:intergenic 15.0%
!! TTTAATTGTTACATTCAAAA+GGG + Chr6:3454721-3454740 MsG0680030477.01.T01:intron 15.0%
!!! AATTGATTTTATACAATCTT+TGG - Chr6:3454702-3454721 None:intergenic 15.0%
!!! ACTATCTTTTAGAATATATT+TGG + Chr6:3457956-3457975 MsG0680030477.01.T01:intron 15.0%
!!! AGATATATTATGTTTTTTCA+AGG + Chr6:3459296-3459315 MsG0680030477.01.T01:three_prime_UTR 15.0%
!!! ATTTGTTCTTTTTTAATGTA+TGG + Chr6:3455461-3455480 MsG0680030477.01.T01:intron 15.0%
!!! CTATCTTTTAGAATATATTT+GGG + Chr6:3457957-3457976 MsG0680030477.01.T01:intron 15.0%
!!! TTATGTTTTTTTTGTAAAAG+AGG - Chr6:3455140-3455159 None:intergenic 15.0%
!!! TTTTAATTGTTACATTCAAA+AGG + Chr6:3454720-3454739 MsG0680030477.01.T01:intron 15.0%
!! AAATATAAAGGGAGTAAATT+AGG - Chr6:3458914-3458933 None:intergenic 20.0%
!! AATATAAAGGGAGTAAATTA+GGG - Chr6:3458913-3458932 None:intergenic 20.0%
!! AATTCCTACTCAAAATATAA+AGG - Chr6:3458926-3458945 None:intergenic 20.0%
!! ACATTTGTATTGAATATTTC+AGG + Chr6:3453276-3453295 MsG0680030477.01.T01:intron 20.0%
!! AGAATAAAAACACAATGATT+AGG + Chr6:3454051-3454070 MsG0680030477.01.T01:intron 20.0%
!! ATATACCATTATTATCATGT+GGG + Chr6:3455040-3455059 MsG0680030477.01.T01:intron 20.0%
!! ATTATTGGAGTGAAAAAAAA+TGG - Chr6:3455303-3455322 None:intergenic 20.0%
!! ATTCCTACTCAAAATATAAA+GGG - Chr6:3458925-3458944 None:intergenic 20.0%
!! CAAATGAAAGTAAAATTCAT+AGG + Chr6:3453545-3453564 MsG0680030477.01.T01:intron 20.0%
!! CAATGTAGTAAATGTTATAT+TGG + Chr6:3453490-3453509 MsG0680030477.01.T01:intron 20.0%
!! GAAATACGTAATTTAGTATA+TGG + Chr6:3458276-3458295 MsG0680030477.01.T01:intron 20.0%
!! GAATAAAAACACAATGATTA+GGG + Chr6:3454052-3454071 MsG0680030477.01.T01:intron 20.0%
!! GATTAAGATATGCTAAATAA+GGG + Chr6:3455853-3455872 MsG0680030477.01.T01:intron 20.0%
!! TAAATTACGTATTTCAGTAA+TGG - Chr6:3458271-3458290 None:intergenic 20.0%
!! TAAGAAAAACTACATTGATA+GGG - Chr6:3459513-3459532 None:intergenic 20.0%
!! TACATGTCTACTTTATATTA+AGG - Chr6:3454471-3454490 None:intergenic 20.0%
!! TGATTAAGATATGCTAAATA+AGG + Chr6:3455852-3455871 MsG0680030477.01.T01:intron 20.0%
!! TGTAAAAAAAATTACACTGA+TGG - Chr6:3459438-3459457 None:intergenic 20.0%
!! TTATTGGAGTGAAAAAAAAT+GGG - Chr6:3455302-3455321 None:intergenic 20.0%
!! TTTCTTCTGATAATACAAAA+AGG - Chr6:3458640-3458659 None:intergenic 20.0%
!!! AAGCTTATTGTGTTAAATTT+TGG + Chr6:3456254-3456273 MsG0680030477.01.T01:intron 20.0%
!!! CTTTATTTTTCTGAAGAAAT+AGG + Chr6:3457116-3457135 MsG0680030477.01.T01:intron 20.0%
!!! GTATATGGAATATCTAAAAT+AGG + Chr6:3458291-3458310 MsG0680030477.01.T01:intron 20.0%
!!! TTAAATTGACTTGATAAGAA+TGG + Chr6:3453773-3453792 MsG0680030477.01.T01:intron 20.0%
!!! TTCTAAAAGATAGTTGTAAA+AGG - Chr6:3457950-3457969 None:intergenic 20.0%
! AAAACAAAACATGACTATCT+TGG - Chr6:3458339-3458358 None:intergenic 25.0%
! AAAAGCCTGTTTAGTTAAAT+AGG + Chr6:3454176-3454195 MsG0680030477.01.T01:intron 25.0%
! AACAGAAAATGAAGATTTCT+TGG + Chr6:3459054-3459073 MsG0680030477.01.T01:CDS 25.0%
! AACTTCTTCAATATGTTTGA+GGG + Chr6:3457009-3457028 MsG0680030477.01.T01:intron 25.0%
! AAGATTATATGCATGTACAT+GGG - Chr6:3456750-3456769 None:intergenic 25.0%
! AATAAATGTCCACTAAAGAT+CGG - Chr6:3457877-3457896 None:intergenic 25.0%
! AGAACAAAGAAAAAGAAACA+CGG - Chr6:3456773-3456792 None:intergenic 25.0%
! AGAACATAGATAGATAGATA+AGG - Chr6:3455189-3455208 None:intergenic 25.0%
! AGATAAGATAACATAACGTT+GGG - Chr6:3455066-3455085 None:intergenic 25.0%
! ATAATTGTAGTTCAATTGGA+TGG + Chr6:3453214-3453233 MsG0680030477.01.T01:intron 25.0%
! ATAGATAGATAGATAAGGTT+TGG - Chr6:3455184-3455203 None:intergenic 25.0%
! ATATAAGTCTACAAGTCATA+GGG - Chr6:3458558-3458577 None:intergenic 25.0%
! ATGATCAAATTGAGAATGAT+GGG - Chr6:3455420-3455439 None:intergenic 25.0%
! ATTGTTCCAAATGCATTAAA+CGG - Chr6:3458795-3458814 None:intergenic 25.0%
! CATATACCATTATTATCATG+TGG + Chr6:3455039-3455058 MsG0680030477.01.T01:intron 25.0%
! CTTTCAATAAAGGCAAATTT+CGG - Chr6:3457684-3457703 None:intergenic 25.0%
! CTTTCATACTATCATTGTTA+GGG - Chr6:3454646-3454665 None:intergenic 25.0%
! GAAATTTGCCTTTATTGAAA+GGG + Chr6:3457683-3457702 MsG0680030477.01.T01:CDS 25.0%
! GGTAAGACATTAATTATATC+AGG + Chr6:3456864-3456883 MsG0680030477.01.T01:CDS 25.0%
! GTAAGAAAAACTACATTGAT+AGG - Chr6:3459514-3459533 None:intergenic 25.0%
! TACATGGGAAATGTTTATTA+CGG - Chr6:3456735-3456754 None:intergenic 25.0%
! TAGATAAGATAACATAACGT+TGG - Chr6:3455067-3455086 None:intergenic 25.0%
! TAGATGTTTAGTCAAGTTTA+AGG - Chr6:3457235-3457254 None:intergenic 25.0%
! TATAAAGTAGACATGTAAGT+AGG + Chr6:3454474-3454493 MsG0680030477.01.T01:intron 25.0%
! TATAACAACAAAGCCTATTA+GGG - Chr6:3454337-3454356 None:intergenic 25.0%
! TATCGTAAACAAAATTACCT+CGG + Chr6:3454822-3454841 MsG0680030477.01.T01:intron 25.0%
! TATGATCAAATTGAGAATGA+TGG - Chr6:3455421-3455440 None:intergenic 25.0%
! TATTGGAGTGAAAAAAAATG+GGG - Chr6:3455301-3455320 None:intergenic 25.0%
! TCTTTCATACTATCATTGTT+AGG - Chr6:3454647-3454666 None:intergenic 25.0%
! TGATATCGATATTGTTAGAT+CGG - Chr6:3455011-3455030 None:intergenic 25.0%
! TGTTCATCAATTATCAGAAA+TGG - Chr6:3453976-3453995 None:intergenic 25.0%
! TTACAATGCTTTCAAATCTA+GGG - Chr6:3455668-3455687 None:intergenic 25.0%
! TTTCATACTATCATTGTTAG+GGG - Chr6:3454645-3454664 None:intergenic 25.0%
!! GACTATACCTTTAGAAATTA+TGG + Chr6:3458460-3458479 MsG0680030477.01.T01:intron 25.0%
!! GAGCGTATCATAATAAATTT+TGG - Chr6:3453808-3453827 None:intergenic 25.0%
!! GATTTTATACAATCTTTGGT+TGG - Chr6:3454698-3454717 None:intergenic 25.0%
!! TCAAAATGAGTGTTTTTCAT+CGG - Chr6:3457428-3457447 None:intergenic 25.0%
!! TCTTTCTTTCTTTCAGTTTT+TGG - Chr6:3454032-3454051 None:intergenic 25.0%
!! TTAAGGATCTTTATGTTTTC+CGG + Chr6:3459164-3459183 MsG0680030477.01.T01:three_prime_UTR 25.0%
!! TTATCGGCTAAAGAAATATT+CGG - Chr6:3453885-3453904 None:intergenic 25.0%
!! TTTTGATACATGATTGTTTG+TGG + Chr6:3457442-3457461 MsG0680030477.01.T01:intron 25.0%
!!! AAAAAATGGCATTGGTATTT+GGG - Chr6:3454675-3454694 None:intergenic 25.0%
!!! AAATGAAGTATTGATGATCT+AGG - Chr6:3458219-3458238 None:intergenic 25.0%
!!! ATATGTTTATTTTTGGTGCA+AGG + Chr6:3453345-3453364 MsG0680030477.01.T01:CDS 25.0%
!!! ATATTTTGAGTAGGAATTTG+AGG + Chr6:3458928-3458947 MsG0680030477.01.T01:intron 25.0%
!!! ATGTATGGTGTTGTTTTTTT+TGG + Chr6:3455476-3455495 MsG0680030477.01.T01:intron 25.0%
!!! ATGTCATAAGTTGTTTCTAT+AGG + Chr6:3458151-3458170 MsG0680030477.01.T01:intron 25.0%
!!! GTTGATAATTGTAGTTCAAT+TGG + Chr6:3453210-3453229 MsG0680030477.01.T01:intron 25.0%
!!! TAAGGTTTGGTTTTTTAACA+AGG - Chr6:3455171-3455190 None:intergenic 25.0%
!!! TATGTTTATTTTTGGTGCAA+GGG + Chr6:3453346-3453365 MsG0680030477.01.T01:CDS 25.0%
AAAAACACAATGATTAGGGT+TGG + Chr6:3454056-3454075 MsG0680030477.01.T01:intron 30.0%
AAAACACAATGATTAGGGTT+GGG + Chr6:3454057-3454076 MsG0680030477.01.T01:intron 30.0%
AAATAGGCTAAGTATGTGTT+TGG + Chr6:3453441-3453460 MsG0680030477.01.T01:intron 30.0%
AACACATAAGCTTCAAAACT+TGG - Chr6:3453469-3453488 None:intergenic 30.0%
AACCTTAAACACCATTGTAA+CGG - Chr6:3453723-3453742 None:intergenic 30.0%
AAGACTCTTAGAGTGATTAT+TGG - Chr6:3455318-3455337 None:intergenic 30.0%
AAGAGGATGTAAAACAACAT+TGG - Chr6:3455123-3455142 None:intergenic 30.0%
AATAAGCTGAAAACAGCTTA+TGG + Chr6:3458126-3458145 MsG0680030477.01.T01:intron 30.0%
AATAGGCTAAGTATGTGTTT+GGG + Chr6:3453442-3453461 MsG0680030477.01.T01:intron 30.0%
AATTCAAATCTAGCTGTGTA+GGG + Chr6:3453397-3453416 MsG0680030477.01.T01:intron 30.0%
ACTCGGAAATAGTTGTAAAA+TGG + Chr6:3456088-3456107 MsG0680030477.01.T01:intron 30.0%
ACTTGTATTGAGATTTGAGA+CGG - Chr6:3455711-3455730 None:intergenic 30.0%
AGACGGAGTTAAAATATACT+CGG + Chr6:3456071-3456090 MsG0680030477.01.T01:intron 30.0%
AGTTAAATAGGCCTTTAAGT+AGG + Chr6:3454397-3454416 MsG0680030477.01.T01:intron 30.0%
AGTTTGACCTATTAATCTCA+AGG + Chr6:3456660-3456679 MsG0680030477.01.T01:intron 30.0%
ATATCTACCATCCAATATGT+TGG - Chr6:3459017-3459036 None:intergenic 30.0%
ATTGACTAAACGTGATTACT+AGG - Chr6:3457402-3457421 None:intergenic 30.0%
CAATCTTTGGTTGGAAAAAA+TGG - Chr6:3454689-3454708 None:intergenic 30.0%
CACCACTAACTAGAATTAAT+AGG - Chr6:3455823-3455842 None:intergenic 30.0%
CCAACATTGGTATTCAAAAA+TGG - Chr6:3455347-3455366 None:intergenic 30.0%
CGAAATTTGCCTTTATTGAA+AGG + Chr6:3457682-3457701 MsG0680030477.01.T01:CDS 30.0%
CTATAACAACAAAGCCTATT+AGG - Chr6:3454338-3454357 None:intergenic 30.0%
CTATCAGTAATATCTTCAAG+TGG - Chr6:3456510-3456529 None:intergenic 30.0%
CTTACAATGCTTTCAAATCT+AGG - Chr6:3455669-3455688 None:intergenic 30.0%
CTTTCAATAGCCAAAATACT+TGG - Chr6:3458970-3458989 None:intergenic 30.0%
GAACTTCTTCAATATGTTTG+AGG + Chr6:3457008-3457027 MsG0680030477.01.T01:intron 30.0%
GAAGATTATATGCATGTACA+TGG - Chr6:3456751-3456770 None:intergenic 30.0%
GATATAAGTCTACAAGTCAT+AGG - Chr6:3458559-3458578 None:intergenic 30.0%
GTGACTTGAATCATACATAA+AGG - Chr6:3456233-3456252 None:intergenic 30.0%
GTTTGACCTATTAATCTCAA+GGG + Chr6:3456661-3456680 MsG0680030477.01.T01:intron 30.0%
TAAAGACAATCCAAACTTAG+AGG + Chr6:3457735-3457754 MsG0680030477.01.T01:CDS 30.0%
TATAACCATCAAGAACTATG+TGG - Chr6:3457771-3457790 None:intergenic 30.0%
TATAGGCTTATAGTGCAAAT+AGG + Chr6:3453425-3453444 MsG0680030477.01.T01:intron 30.0%
TCATGATTACCTCTATGTTA+GGG - Chr6:3453918-3453937 None:intergenic 30.0%
TCATTTGTATGTGATTGAAG+CGG + Chr6:3458233-3458252 MsG0680030477.01.T01:intron 30.0%
TCTATCTATTAGTCCCTAAT+AGG + Chr6:3454321-3454340 MsG0680030477.01.T01:intron 30.0%
TCTGATAATACAAAAAGGTG+CGG - Chr6:3458635-3458654 None:intergenic 30.0%
TCTTTGGCTATCTTTCTTAA+TGG + Chr6:3453100-3453119 MsG0680030477.01.T01:CDS 30.0%
TTCATGATTACCTCTATGTT+AGG - Chr6:3453919-3453938 None:intergenic 30.0%
TTGAACTGATACTACAAGAT+AGG + Chr6:3456955-3456974 MsG0680030477.01.T01:intron 30.0%
TTTAGTCAAGTTTAAGGACT+TGG - Chr6:3457229-3457248 None:intergenic 30.0%
! AAGTCTGACATTGAGATTTT+AGG - Chr6:3457371-3457390 None:intergenic 30.0%
! ACCTTTAGAAATTATGGTAG+AGG + Chr6:3458466-3458485 MsG0680030477.01.T01:intron 30.0%
! AGAAACTGAGTATTTTACGT+TGG + Chr6:3456801-3456820 MsG0680030477.01.T01:intron 30.0%
! AGATTTTTACATCCAGAATC+TGG + Chr6:3459254-3459273 MsG0680030477.01.T01:three_prime_UTR 30.0%
! ATCTAGAGTATCAAGATGAA+TGG + Chr6:3455082-3455101 MsG0680030477.01.T01:intron 30.0%
! CACCTATTAATTCTAGTTAG+TGG + Chr6:3455818-3455837 MsG0680030477.01.T01:intron 30.0%
! CCTTTAGAAATTATGGTAGA+GGG + Chr6:3458467-3458486 MsG0680030477.01.T01:intron 30.0%
! GAAACTGAGTATTTTACGTT+GGG + Chr6:3456802-3456821 MsG0680030477.01.T01:intron 30.0%
! GACTTTGTAACTTTAAGAGA+CGG + Chr6:3456054-3456073 MsG0680030477.01.T01:intron 30.0%
! GTAGAAAGACACTTTTATGA+TGG + Chr6:3457826-3457845 MsG0680030477.01.T01:intron 30.0%
! GTAGCTAAAATGCTATTTGA+TGG + Chr6:3454445-3454464 MsG0680030477.01.T01:intron 30.0%
! GTTTAATGCATTTGGAACAA+TGG + Chr6:3458794-3458813 MsG0680030477.01.T01:CDS 30.0%
! TATCGGCTAAAGAAATATTC+GGG - Chr6:3453884-3453903 None:intergenic 30.0%
! TTTTTGAATACCAATGTTGG+AGG + Chr6:3455347-3455366 MsG0680030477.01.T01:intron 30.0%
!! ACTCCCTTTATATTTTGAGT+AGG + Chr6:3458919-3458938 MsG0680030477.01.T01:intron 30.0%
!! CCATTTTTGAATACCAATGT+TGG + Chr6:3455344-3455363 MsG0680030477.01.T01:intron 30.0%
!! CTAATAGGCTTTGTTGTTAT+AGG + Chr6:3454336-3454355 MsG0680030477.01.T01:intron 30.0%
!! GAAAAAATGGCATTGGTATT+TGG - Chr6:3454676-3454695 None:intergenic 30.0%
!! GTTGTTATAGGCTTTTAAGT+AGG + Chr6:3454348-3454367 MsG0680030477.01.T01:intron 30.0%
!! TAAGTTGTTTGTTGTCCATA+AGG + Chr6:3456003-3456022 MsG0680030477.01.T01:intron 30.0%
!! TCTTTCTTAATGGATTGTGT+TGG + Chr6:3453110-3453129 MsG0680030477.01.T01:CDS 30.0%
!! TGTTAAATTTTGGTGCAGAA+AGG + Chr6:3456264-3456283 MsG0680030477.01.T01:intron 30.0%
!! TTTTCTGAAGAAATAGGAGA+CGG + Chr6:3457122-3457141 MsG0680030477.01.T01:intron 30.0%
!! TTTTTAAAAAGCCTAAGCCT+AGG - Chr6:3454160-3454179 None:intergenic 30.0%
!!! TGGTTTTTTAACAAGGTATG+AGG - Chr6:3455164-3455183 None:intergenic 30.0%
!!! TTCATCTTTTTTTTGTGCAG+CGG + Chr6:3458362-3458381 MsG0680030477.01.T01:intron 30.0%
AAAAGCCTGTTAAGCCTAAT+AGG + Chr6:3454217-3454236 MsG0680030477.01.T01:intron 35.0%
AACACACATTCCTCTAAGTT+TGG - Chr6:3457748-3457767 None:intergenic 35.0%
AACCGTTACAATGGTGTTTA+AGG + Chr6:3453718-3453737 MsG0680030477.01.T01:intron 35.0%
AAGCCTTAAAGCCTACTTAA+AGG - Chr6:3454411-3454430 None:intergenic 35.0%
AAGCTTCCGTTTAATGCATT+TGG + Chr6:3458786-3458805 MsG0680030477.01.T01:CDS 35.0%
AATCTTCCATTGTTAGAAGG+AGG - Chr6:3457509-3457528 None:intergenic 35.0%
AATTATGGTAGAGGGAGAAA+AGG + Chr6:3458475-3458494 MsG0680030477.01.T01:intron 35.0%
AATTGAACTGCTTGATAAGC+TGG + Chr6:3456914-3456933 MsG0680030477.01.T01:CDS 35.0%
ACATGATTGTTTGTGGTATC+TGG + Chr6:3457449-3457468 MsG0680030477.01.T01:intron 35.0%
ACTGATAGTCTCAAGATTTC+TGG + Chr6:3456522-3456541 MsG0680030477.01.T01:CDS 35.0%
ACTTGGATCAATAAAACCCT+CGG - Chr6:3458426-3458445 None:intergenic 35.0%
ACTTGTCCCTTGAGATTAAT+AGG - Chr6:3456670-3456689 None:intergenic 35.0%
AGCATTAGTGCAAACCTATT+AGG + Chr6:3457203-3457222 MsG0680030477.01.T01:intron 35.0%
AGCGCTAGTTAAGCTATTTA+TGG - Chr6:3457991-3458010 None:intergenic 35.0%
AGGATGTAAAACAACATTGG+TGG - Chr6:3455120-3455139 None:intergenic 35.0%
ATAAAGTCCAACCGTTACAA+TGG + Chr6:3453709-3453728 MsG0680030477.01.T01:intron 35.0%
ATACTATCATTGTTAGGGGT+GGG - Chr6:3454641-3454660 None:intergenic 35.0%
ATAGGGTTATGTGATCTTCA+TGG - Chr6:3458541-3458560 None:intergenic 35.0%
ATCCAAGTACAGAGAAAACA+AGG + Chr6:3458438-3458457 MsG0680030477.01.T01:intron 35.0%
CAAACCAGAAACAACTTGAA+TGG - Chr6:3459110-3459129 None:intergenic 35.0%
CAATTCAAATCTAGCTGTGT+AGG + Chr6:3453396-3453415 MsG0680030477.01.T01:intron 35.0%
CCCTCTACCATAATTTCTAA+AGG - Chr6:3458470-3458489 None:intergenic 35.0%
CCTGACCTATTTAACTAAAC+AGG - Chr6:3454184-3454203 None:intergenic 35.0%
CCTGTTTAGTTAAATAGGTC+AGG + Chr6:3454181-3454200 MsG0680030477.01.T01:intron 35.0%
CTAAACATCTACCTAGTCAA+CGG + Chr6:3457244-3457263 MsG0680030477.01.T01:intron 35.0%
CTCAATCTTCCATTGTTAGA+AGG - Chr6:3457512-3457531 None:intergenic 35.0%
CTCTACAAAGATTCAGACTT+TGG - Chr6:3454774-3454793 None:intergenic 35.0%
CTTCTAACAATGGAAGATTG+AGG + Chr6:3457510-3457529 MsG0680030477.01.T01:intron 35.0%
GATATCAATACAGACAGATC+AGG - Chr6:3456405-3456424 None:intergenic 35.0%
GCTGAATCAAAGAAAGAACA+TGG + Chr6:3456891-3456910 MsG0680030477.01.T01:CDS 35.0%
GCTTTCAAATCTAGGGATAA+AGG - Chr6:3455661-3455680 None:intergenic 35.0%
GGATGTAAAACAACATTGGT+GGG - Chr6:3455119-3455138 None:intergenic 35.0%
GGTATTTATGCGATTTATGC+AGG - Chr6:3457058-3457077 None:intergenic 35.0%
GTAGAGTCTATTCTTTGACA+TGG + Chr6:3458831-3458850 MsG0680030477.01.T01:intron 35.0%
GTGAGGAAATTGTTGTATGT+AGG + Chr6:3459367-3459386 MsG0680030477.01.T01:three_prime_UTR 35.0%
TAAACATCTACCTAGTCAAC+GGG + Chr6:3457245-3457264 MsG0680030477.01.T01:intron 35.0%
TAATGTCTTACCTTGCTTGA+GGG - Chr6:3456856-3456875 None:intergenic 35.0%
TACAGACAGATCAGGTAAAA+CGG - Chr6:3456397-3456416 None:intergenic 35.0%
TAGTTAAATAGGTCAGGCTT+AGG + Chr6:3454187-3454206 MsG0680030477.01.T01:intron 35.0%
TATCTATCTTGGAGAGCTTA+TGG + Chr6:3458102-3458121 MsG0680030477.01.T01:intron 35.0%
TATTAATAGGCCAGCCTATT+AGG - Chr6:3454234-3454253 None:intergenic 35.0%
TCTACTAAATCCTCCAACAT+TGG - Chr6:3455360-3455379 None:intergenic 35.0%
TGAGTTAAGCTAACACCTTA+TGG - Chr6:3456021-3456040 None:intergenic 35.0%
TGGTCTTCCTATTGACAATA+AGG + Chr6:3456464-3456483 MsG0680030477.01.T01:CDS 35.0%
TGTTCTCAGTGAGAATAAGA+AGG + Chr6:3457093-3457112 MsG0680030477.01.T01:intron 35.0%
TTAAACACCATTGTAACGGT+TGG - Chr6:3453719-3453738 None:intergenic 35.0%
TTAATGTCTTACCTTGCTTG+AGG - Chr6:3456857-3456876 None:intergenic 35.0%
TTGGTTGGAAAAAATGGCAT+TGG - Chr6:3454683-3454702 None:intergenic 35.0%
! AAGACACTTTTATGATGGCA+TGG + Chr6:3457831-3457850 MsG0680030477.01.T01:intron 35.0%
! AAGGTGTTAGCTTAACTCAT+AGG + Chr6:3456022-3456041 MsG0680030477.01.T01:intron 35.0%
! CTAAATAAGGGTGTATTAGC+GGG + Chr6:3455865-3455884 MsG0680030477.01.T01:intron 35.0%
! CTAATCGCCTTATTGTCAAT+AGG - Chr6:3456474-3456493 None:intergenic 35.0%
! GAAATTGTGACTGTTTTGTG+AGG + Chr6:3459350-3459369 MsG0680030477.01.T01:three_prime_UTR 35.0%
! GATCTGTCTGTATTGATATC+TGG + Chr6:3456405-3456424 MsG0680030477.01.T01:CDS 35.0%
! GATGGTAGATATGCAGTTTT+TGG + Chr6:3459025-3459044 MsG0680030477.01.T01:CDS 35.0%
! GCTAAATAAGGGTGTATTAG+CGG + Chr6:3455864-3455883 MsG0680030477.01.T01:intron 35.0%
! GCTGATTTCGTTATCTATCT+TGG + Chr6:3458091-3458110 MsG0680030477.01.T01:intron 35.0%
! GTTTTACAACTGTCTCTGAA+GGG - Chr6:3456699-3456718 None:intergenic 35.0%
! TCTAGAGTTTCGCCATAAAA+AGG - Chr6:3458503-3458522 None:intergenic 35.0%
! TGAAGAAGTTCCTTCTGTTT+TGG - Chr6:3456999-3457018 None:intergenic 35.0%
! TGAATATTTCAGGTCAGCAA+TGG + Chr6:3453286-3453305 MsG0680030477.01.T01:intron 35.0%
! TTGATGATCTAGGATCTGTT+TGG - Chr6:3458209-3458228 None:intergenic 35.0%
! TTTCTGAAGAAATAGGAGAC+GGG + Chr6:3457123-3457142 MsG0680030477.01.T01:intron 35.0%
! TTTTTATGGCGAAACTCTAG+AGG + Chr6:3458502-3458521 MsG0680030477.01.T01:intron 35.0%
!! ATTGAGATTTTAGGTGCAGT+TGG - Chr6:3457362-3457381 None:intergenic 35.0%
!! CATTCAAGTTGTTTCTGGTT+TGG + Chr6:3459108-3459127 MsG0680030477.01.T01:CDS 35.0%
!! GAATCCATTCAAGTTGTTTC+TGG + Chr6:3459103-3459122 MsG0680030477.01.T01:CDS 35.0%
!! TCAAATTGAGAATGATGGGT+TGG - Chr6:3455416-3455435 None:intergenic 35.0%
!! TTCTAGTTAGTGGTGTTGTT+AGG + Chr6:3455828-3455847 MsG0680030477.01.T01:intron 35.0%
!!! CTTTTGATTTCCCTTGTAGT+TGG + Chr6:3457903-3457922 MsG0680030477.01.T01:intron 35.0%
AAATGGGGTAGTTGCAAAGT+TGG - Chr6:3455286-3455305 None:intergenic 40.0%
AACGATCCTCCTTCTAACAA+TGG + Chr6:3457500-3457519 MsG0680030477.01.T01:intron 40.0%
AAGTTGGAACAATAGTGACG+AGG - Chr6:3455270-3455289 None:intergenic 40.0%
AATAACAGGAGTTCCTACGT+TGG + Chr6:3456341-3456360 MsG0680030477.01.T01:CDS 40.0%
AATCTGGCATTCAGTTAAGC+AGG + Chr6:3459270-3459289 MsG0680030477.01.T01:three_prime_UTR 40.0%
ACAATAGTGACGAGGAATGA+TGG - Chr6:3455262-3455281 None:intergenic 40.0%
ACAGACAGATCAGGTAAAAC+GGG - Chr6:3456396-3456415 None:intergenic 40.0%
ACCAGGAGATAAATGTCGAA+GGG - Chr6:3453157-3453176 None:intergenic 40.0%
ACTTCTCCAGTAACCATTGA+AGG - Chr6:3459234-3459253 None:intergenic 40.0%
ACTTCTGTGAGCTTATCTAC+TGG - Chr6:3458182-3458201 None:intergenic 40.0%
AGACATGTAAGTAGGCTTTC+AGG + Chr6:3454482-3454501 MsG0680030477.01.T01:intron 40.0%
AGATTTCTTGGCAGACCTTA+AGG + Chr6:3459066-3459085 MsG0680030477.01.T01:CDS 40.0%
AGCAATGCCAACATATTGGA+TGG + Chr6:3459007-3459026 MsG0680030477.01.T01:CDS 40.0%
AGGCCTTTAAGTAGGCTTTA+AGG + Chr6:3454405-3454424 MsG0680030477.01.T01:intron 40.0%
ATAACAGGAGTTCCTACGTT+GGG + Chr6:3456342-3456361 MsG0680030477.01.T01:CDS 40.0%
ATATCTTTAGCACTTGCGGT+CGG + Chr6:3456315-3456334 MsG0680030477.01.T01:CDS 40.0%
ATATTCGGGACTTCCTTCTT+TGG - Chr6:3453870-3453889 None:intergenic 40.0%
ATTCTCACTGAGAACATCGA+TGG - Chr6:3457089-3457108 None:intergenic 40.0%
CAACTAGTGATCCAGTGATT+CGG - Chr6:3457320-3457339 None:intergenic 40.0%
CAAGAAAAACGGCCTATGAT+AGG + Chr6:3454538-3454557 MsG0680030477.01.T01:intron 40.0%
CAATGATTAGGGTTGGGAAT+AGG + Chr6:3454063-3454082 MsG0680030477.01.T01:intron 40.0%
CATACTATCATTGTTAGGGG+TGG - Chr6:3454642-3454661 None:intergenic 40.0%
CGTGCGCAATATTTAATAGC+CGG - Chr6:3459186-3459205 None:intergenic 40.0%
CTAACAATGGAAGATTGAGG+AGG + Chr6:3457513-3457532 MsG0680030477.01.T01:intron 40.0%
CTATGACATCACCAACCTTA+AGG - Chr6:3459084-3459103 None:intergenic 40.0%
CTCTTTCTCTCTACCTTCAA+TGG + Chr6:3455230-3455249 MsG0680030477.01.T01:intron 40.0%
CTTAACTGAATGCCAGATTC+TGG - Chr6:3459269-3459288 None:intergenic 40.0%
CTTCACCAAACCAACTACAA+GGG - Chr6:3457916-3457935 None:intergenic 40.0%
GATTTCCCTTGTAGTTGGTT+TGG + Chr6:3457908-3457927 MsG0680030477.01.T01:intron 40.0%
GGTATAGATCCGATCTTTAG+TGG + Chr6:3457865-3457884 MsG0680030477.01.T01:intron 40.0%
GTGTTCCACATAGTTCTTGA+TGG + Chr6:3457763-3457782 MsG0680030477.01.T01:CDS 40.0%
GTTGAAGAAGACATGGTTGA+TGG + Chr6:3457631-3457650 MsG0680030477.01.T01:CDS 40.0%
GTTTAAGGACTTGGCCTAAT+AGG - Chr6:3457220-3457239 None:intergenic 40.0%
TAACCAGCAATCTTGTAGCT+GGG - Chr6:3459147-3459166 None:intergenic 40.0%
TACCAAGTCAACGAAATTGC+CGG - Chr6:3457809-3457828 None:intergenic 40.0%
TACCAGGAGATAAATGTCGA+AGG - Chr6:3453158-3453177 None:intergenic 40.0%
TAGGAATTTGAGGACAACTC+TGG + Chr6:3458938-3458957 MsG0680030477.01.T01:intron 40.0%
TATTCCTCAGGCACTTCATA+TGG - Chr6:3457661-3457680 None:intergenic 40.0%
TATTCGGGACTTCCTTCTTT+GGG - Chr6:3453869-3453888 None:intergenic 40.0%
TCCAAGCAATGCCAACATAT+TGG + Chr6:3459003-3459022 MsG0680030477.01.T01:CDS 40.0%
TCCAATATGTTGGCATTGCT+TGG - Chr6:3459007-3459026 None:intergenic 40.0%
TCTTCACCAAACCAACTACA+AGG - Chr6:3457917-3457936 None:intergenic 40.0%
TGCGATATCTTTAGCACTTG+CGG + Chr6:3456311-3456330 MsG0680030477.01.T01:CDS 40.0%
TTAACCAGCAATCTTGTAGC+TGG - Chr6:3459148-3459167 None:intergenic 40.0%
TTAGGGCTGAATGAGGTTAT+CGG - Chr6:3453901-3453920 None:intergenic 40.0%
TTGGGCCCACATGATAATAA+TGG - Chr6:3455048-3455067 None:intergenic 40.0%
! AGCTACAAGATTGCTGGTTA+AGG + Chr6:3459147-3459166 MsG0680030477.01.T01:three_prime_UTR 40.0%
! ATTTCCATATGAAGTGCCTG+AGG + Chr6:3457654-3457673 MsG0680030477.01.T01:CDS 40.0%
! CAAAAAGGTGCGGAAAAGAT+TGG - Chr6:3458625-3458644 None:intergenic 40.0%
! CGTTTTACAACTGTCTCTGA+AGG - Chr6:3456700-3456719 None:intergenic 40.0%
! TTAGGCTTAACAGGCTTTTC+TGG - Chr6:3454216-3454235 None:intergenic 40.0%
! TTTCAGGTCAGCAATGGTAT+TGG + Chr6:3453292-3453311 MsG0680030477.01.T01:intron 40.0%
! TTTGAACCCTCTGTCTTGTT+TGG + Chr6:3458732-3458751 MsG0680030477.01.T01:intron 40.0%
!! AATGGTATTGGTGCAATCTC+AGG + Chr6:3453304-3453323 MsG0680030477.01.T01:CDS 40.0%
!! AATTGAGAATGATGGGTTGG+TGG - Chr6:3455413-3455432 None:intergenic 40.0%
!! ATGATGGATGATGCCATTGA+AGG - Chr6:3455246-3455265 None:intergenic 40.0%
!! TCTCAAGATTTCTGGAGTCA+AGG + Chr6:3456530-3456549 MsG0680030477.01.T01:CDS 40.0%
!!! AGGAGGATCGTTGTTTTTGT+CGG - Chr6:3457492-3457511 None:intergenic 40.0%
!!! CTATCATAGGCCGTTTTTCT+TGG - Chr6:3454540-3454559 None:intergenic 40.0%
!!! GGAGAAAAGGCACCTTTTTA+TGG + Chr6:3458488-3458507 MsG0680030477.01.T01:intron 40.0%
!!! GTCCTTGTTTTCTCTGTACT+TGG - Chr6:3458443-3458462 None:intergenic 40.0%
!!! TCAGGCCTGTATTTTTTCGT+AGG + Chr6:3454574-3454593 MsG0680030477.01.T01:intron 40.0%
!!! TCTTTTTTTTGTGCAGCGGA+CGG + Chr6:3458366-3458385 MsG0680030477.01.T01:intron 40.0%
AAAAAATACAGGCCTGAGCC+TGG - Chr6:3454571-3454590 None:intergenic 45.0%
AACCAGCAATCTTGTAGCTG+GGG - Chr6:3459146-3459165 None:intergenic 45.0%
ACAGGAGCTTGGTCTATACA+AGG + Chr6:3458755-3458774 MsG0680030477.01.T01:intron 45.0%
ACCTGGCCTATTTAAAAGCC+TGG - Chr6:3454513-3454532 None:intergenic 45.0%
ACGTGTAGTTCGACCTTCAA+TGG + Chr6:3459218-3459237 MsG0680030477.01.T01:three_prime_UTR 45.0%
AGAGAAAGAGACAGTGGAAG+GGG - Chr6:3455220-3455239 None:intergenic 45.0%
AGAGAGAAAGAGACAGTGGA+AGG - Chr6:3455222-3455241 None:intergenic 45.0%
AGATCGGATCTATACCTCTC+TGG - Chr6:3457861-3457880 None:intergenic 45.0%
AGGTAGAGAGAAAGAGACAG+TGG - Chr6:3455226-3455245 None:intergenic 45.0%
ATGGAAGATTGAGGAGGACT+TGG + Chr6:3457519-3457538 MsG0680030477.01.T01:intron 45.0%
ATTCGGGACTTCCTTCTTTG+GGG - Chr6:3453868-3453887 None:intergenic 45.0%
CAGACAGATCAGGTAAAACG+GGG - Chr6:3456395-3456414 None:intergenic 45.0%
CATATCTCAACAATGCCCCA+GGG - Chr6:3456446-3456465 None:intergenic 45.0%
CCAGGAGATAAATGTCGAAG+GGG - Chr6:3453156-3453175 None:intergenic 45.0%
CCTAGGCCTATCTACTAAAC+AGG - Chr6:3454143-3454162 None:intergenic 45.0%
CCTGTTTAGTAGATAGGCCT+AGG + Chr6:3454140-3454159 MsG0680030477.01.T01:intron 45.0%
CGAATCACTGGATCACTCAA+CGG + Chr6:3457281-3457300 MsG0680030477.01.T01:intron 45.0%
CGTTGAGTGATCCAGTGATT+CGG - Chr6:3457283-3457302 None:intergenic 45.0%
CTCATTCAGCCCTAACATAG+AGG + Chr6:3453906-3453925 MsG0680030477.01.T01:intron 45.0%
CTCTATGTTAGGGCTGAATG+AGG - Chr6:3453908-3453927 None:intergenic 45.0%
GAATCACTGGATCACTCAAC+GGG + Chr6:3457282-3457301 MsG0680030477.01.T01:intron 45.0%
GAGAGAAAGAGACAGTGGAA+GGG - Chr6:3455221-3455240 None:intergenic 45.0%
GAGAGCAGCTGTAGATATGA+AGG + Chr6:3457705-3457724 MsG0680030477.01.T01:CDS 45.0%
GATATCTGGACCGCCAATTA+AGG + Chr6:3456419-3456438 MsG0680030477.01.T01:CDS 45.0%
GCCTATTTAAAAGCCTGGAC+TGG - Chr6:3454508-3454527 None:intergenic 45.0%
GCTGCTCTCCCTTTCAATAA+AGG - Chr6:3457694-3457713 None:intergenic 45.0%
GGCAAATTTCGGTATTCCTC+AGG - Chr6:3457673-3457692 None:intergenic 45.0%
GTTCGACCTTCAATGGTTAC+TGG + Chr6:3459225-3459244 MsG0680030477.01.T01:three_prime_UTR 45.0%
TAACAGGAGTTCCTACGTTG+GGG + Chr6:3456343-3456362 MsG0680030477.01.T01:CDS 45.0%
TAGTAGATAGGCCTAGGCTT+AGG + Chr6:3454146-3454165 MsG0680030477.01.T01:intron 45.0%
TATAATGCCCCTGTAACTGC+CGG + Chr6:3457787-3457806 MsG0680030477.01.T01:CDS 45.0%
TATCTTTAGCACTTGCGGTC+GGG + Chr6:3456316-3456335 MsG0680030477.01.T01:CDS 45.0%
TATGCTATTGGCCGAATCAC+TGG + Chr6:3457306-3457325 MsG0680030477.01.T01:intron 45.0%
TCCTGTCCAAACAAGACAGA+GGG - Chr6:3458741-3458760 None:intergenic 45.0%
TCTCAGCTGCAGTCAATGAA+AGG - Chr6:3457583-3457602 None:intergenic 45.0%
TGGGTTGTAGAATGTGAGAC+AGG + Chr6:3456821-3456840 MsG0680030477.01.T01:intron 45.0%
TTAGCTGCATGTGCATCGTT+AGG - Chr6:3456372-3456391 None:intergenic 45.0%
TTCTTGGCAGACCTTAAGGT+TGG + Chr6:3459070-3459089 MsG0680030477.01.T01:CDS 45.0%
TTGAAGGTCGAACTACACGT+CGG - Chr6:3459218-3459237 None:intergenic 45.0%
TTTATTCCTCCCCCCAAAGA+AGG + Chr6:3453854-3453873 MsG0680030477.01.T01:intron 45.0%
TTTCTGTGTTTGTGTCACCG+AGG - Chr6:3454842-3454861 None:intergenic 45.0%
! CTGCAGTGTTGAAGAAGACA+TGG + Chr6:3457624-3457643 MsG0680030477.01.T01:intron 45.0%
! GCCAGTCCAGGCTTTTAAAT+AGG + Chr6:3454504-3454523 MsG0680030477.01.T01:intron 45.0%
! GCTGGCCTACGAAAAAATAC+AGG - Chr6:3454582-3454601 None:intergenic 45.0%
! GCTTTTAAATAGGCCAGGTC+AGG + Chr6:3454514-3454533 MsG0680030477.01.T01:intron 45.0%
! TCCAGGCTTTTAAATAGGCC+AGG + Chr6:3454509-3454528 MsG0680030477.01.T01:intron 45.0%
! TGCATTTGGAACAATGGCGA+TGG + Chr6:3458800-3458819 MsG0680030477.01.T01:CDS 45.0%
!! AATGATGGGTTGGTGGAGTT+TGG - Chr6:3455406-3455425 None:intergenic 45.0%
!!! ATTTTTTCGTAGGCCAGCTC+AGG + Chr6:3454584-3454603 MsG0680030477.01.T01:intron 45.0%
!!! CTGGCTCTAGCCAAGTATTT+TGG + Chr6:3458957-3458976 MsG0680030477.01.T01:CDS 45.0%
!!! TTCCTTCTGTTTTGGTGCCA+CGG - Chr6:3456991-3457010 None:intergenic 45.0%
!! TTTAAATAAATAGTATTAAT+AGG - Chr6:3454247-3454266 None:intergenic 5.0%
AACCCCAGCTACAAGATTGC+TGG + Chr6:3459141-3459160 MsG0680030477.01.T01:exon 50.0%
AACGGCCTATGATAGGCCAT+AGG + Chr6:3454545-3454564 MsG0680030477.01.T01:intron 50.0%
AATGCCCCAGGGTCCTTAAT+TGG - Chr6:3456435-3456454 None:intergenic 50.0%
ACGAAATTGCCGGCAGTTAC+AGG - Chr6:3457799-3457818 None:intergenic 50.0%
ACGCACTACGCAGTAAGCAT+AGG - Chr6:3456614-3456633 None:intergenic 50.0%
ACTGCAGCTGAGATGTTCCT+GGG + Chr6:3457590-3457609 MsG0680030477.01.T01:intron 50.0%
AGCTGTGTAGGGTGCAGTAT+AGG + Chr6:3453408-3453427 MsG0680030477.01.T01:intron 50.0%
CCAGGTCAGGCCAAGAAAAA+CGG + Chr6:3454527-3454546 MsG0680030477.01.T01:intron 50.0%
CCATATCTCAACAATGCCCC+AGG - Chr6:3456447-3456466 None:intergenic 50.0%
CCCCTTCGACATTTATCTCC+TGG + Chr6:3453153-3453172 MsG0680030477.01.T01:CDS 50.0%
CGAAATTGCCGGCAGTTACA+GGG - Chr6:3457798-3457817 None:intergenic 50.0%
CTCCTGTCCAAACAAGACAG+AGG - Chr6:3458742-3458761 None:intergenic 50.0%
CTGCTTGATAAGCTGGAAGC+TGG + Chr6:3456921-3456940 MsG0680030477.01.T01:CDS 50.0%
CTTGCGGTCGGGTTAATAAC+AGG + Chr6:3456327-3456346 MsG0680030477.01.T01:CDS 50.0%
GAAATTGCCGGCAGTTACAG+GGG - Chr6:3457797-3457816 None:intergenic 50.0%
GCCAGCCTATTAGGCTTAAC+AGG - Chr6:3454225-3454244 None:intergenic 50.0%
GCCTATCTACTAAACAGGCC+AGG - Chr6:3454138-3454157 None:intergenic 50.0%
GCCTGGCCTGTTTAGTAGAT+AGG + Chr6:3454134-3454153 MsG0680030477.01.T01:intron 50.0%
GCCTGTTAAGCCTAATAGGC+TGG + Chr6:3454221-3454240 MsG0680030477.01.T01:intron 50.0%
GGATCAATAAAACCCTCGGC+AGG - Chr6:3458422-3458441 None:intergenic 50.0%
TCATTGTTAGGGGTGGGAGT+AGG - Chr6:3454635-3454654 None:intergenic 50.0%
TTCGGGACTTCCTTCTTTGG+GGG - Chr6:3453867-3453886 None:intergenic 50.0%
! AGATAGGAATCGAGTTGCCG+TGG + Chr6:3456971-3456990 MsG0680030477.01.T01:intron 50.0%
! ATCTACCTAGTCAACGGGCT+AGG + Chr6:3457250-3457269 MsG0680030477.01.T01:intron 50.0%
! TGCCGGCAATTTCGTTGACT+TGG + Chr6:3457804-3457823 MsG0680030477.01.T01:CDS 50.0%
!! ACCCTCTGTCTTGTTTGGAC+AGG + Chr6:3458737-3458756 MsG0680030477.01.T01:intron 50.0%
!! CACTCAACGGGCTATGCTAT+TGG + Chr6:3457294-3457313 MsG0680030477.01.T01:intron 50.0%
!! CCTGGGGCATTGTTGAGATA+TGG + Chr6:3456444-3456463 MsG0680030477.01.T01:CDS 50.0%
!! GGACGGTTTGTTGTCCAAAC+CGG + Chr6:3458383-3458402 MsG0680030477.01.T01:intron 50.0%
!! GTCTTGTTTGGACAGGAGCT+TGG + Chr6:3458744-3458763 MsG0680030477.01.T01:intron 50.0%
AATAGGCCAGCCGCCTACAA+GGG + Chr6:3454080-3454099 MsG0680030477.01.T01:intron 55.0%
ACCGCCAATTAAGGACCCTG+GGG + Chr6:3456428-3456447 MsG0680030477.01.T01:CDS 55.0%
AGCTCAGGCCTATCAAAGCC+TGG + Chr6:3454599-3454618 MsG0680030477.01.T01:intron 55.0%
CCTATGATAGGCCATAGGCC+AGG + Chr6:3454550-3454569 MsG0680030477.01.T01:intron 55.0%
CCTGGCCTATGGCCTATCAT+AGG - Chr6:3454553-3454572 None:intergenic 55.0%
CTGCAGAAATGCAATGCCCC+AGG - Chr6:3457610-3457629 None:intergenic 55.0%
CTGCAGCTGAGATGTTCCTG+GGG + Chr6:3457591-3457610 MsG0680030477.01.T01:intron 55.0%
GACCGCCAATTAAGGACCCT+GGG + Chr6:3456427-3456446 MsG0680030477.01.T01:CDS 55.0%
GACTGCAGCTGAGATGTTCC+TGG + Chr6:3457589-3457608 MsG0680030477.01.T01:intron 55.0%
GATGGCATGGAGATCCAGAG+AGG + Chr6:3457844-3457863 MsG0680030477.01.T01:intron 55.0%
TAGGCTACTGGCCGAATCAC+TGG + Chr6:3457269-3457288 MsG0680030477.01.T01:intron 55.0%
TCGGGACTTCCTTCTTTGGG+GGG - Chr6:3453866-3453885 None:intergenic 55.0%
TCGTTAGGCAACCCCAACGT+AGG - Chr6:3456357-3456376 None:intergenic 55.0%
TCTACTAAACAGGCCAGGCC+AGG - Chr6:3454133-3454152 None:intergenic 55.0%
TGCCGTGGCACCAAAACAGA+AGG + Chr6:3456986-3457005 MsG0680030477.01.T01:intron 55.0%
! AGGCTTTGATAGGCCTGAGC+TGG - Chr6:3454600-3454619 None:intergenic 55.0%
! AGTAGCCTAGCCCGTTGACT+AGG - Chr6:3457258-3457277 None:intergenic 55.0%
!! CCGTTTTTCTTGGCCTGACC+TGG - Chr6:3454530-3454549 None:intergenic 55.0%
!! TAGTCAACGGGCTAGGCTAC+TGG + Chr6:3457257-3457276 MsG0680030477.01.T01:intron 55.0%
AAACCCTCGGCAGGACCTTC+AGG - Chr6:3458413-3458432 None:intergenic 60.0%
AACCCTCGGCAGGACCTTCA+GGG - Chr6:3458412-3458431 None:intergenic 60.0%
AGGCCTATCAAAGCCTGGCC+TGG + Chr6:3454604-3454623 MsG0680030477.01.T01:intron 60.0%
ATAGGCCATAGGCCAGGCTC+AGG + Chr6:3454556-3454575 MsG0680030477.01.T01:intron 60.0%
GAATAGGCCAGCCGCCTACA+AGG + Chr6:3454079-3454098 MsG0680030477.01.T01:intron 60.0%
GCCCCAGGGTCCTTAATTGG+CGG - Chr6:3456432-3456451 None:intergenic 60.0%
GGACCGCCAATTAAGGACCC+TGG + Chr6:3456426-3456445 MsG0680030477.01.T01:CDS 60.0%
GTAGGCTTTCAGGCCAGTCC+AGG + Chr6:3454492-3454511 MsG0680030477.01.T01:intron 60.0%
GTCCAAACCGGTGACCCTGA+AGG + Chr6:3458395-3458414 MsG0680030477.01.T01:intron 60.0%
TATCAAAGCCTGGCCTGGCC+TGG + Chr6:3454609-3454628 MsG0680030477.01.T01:intron 60.0%
! AGGCCAGGCCAGGCTTTGAT+AGG - Chr6:3454610-3454629 None:intergenic 60.0%
! GACCTTCAGGGTCACCGGTT+TGG - Chr6:3458400-3458419 None:intergenic 60.0%
! GGACTTCCTTCTTTGGGGGG+AGG - Chr6:3453863-3453882 None:intergenic 60.0%
ACAGGCCTGAGCCTGGCCTA+TGG - Chr6:3454564-3454583 None:intergenic 65.0%
AGGCCAGGCCAAAACAGGCC+AGG - Chr6:3454113-3454132 None:intergenic 65.0%
AGGCCAGGCCAGGCCAAAAC+AGG - Chr6:3454118-3454137 None:intergenic 65.0%
AGGCCGTAGGCCCTTGTAGG+CGG - Chr6:3454093-3454112 None:intergenic 65.0%
CAGCCGCCTACAAGGGCCTA+CGG + Chr6:3454087-3454106 MsG0680030477.01.T01:intron 65.0%
GACCCTGAAGGTCCTGCCGA+GGG + Chr6:3458407-3458426 MsG0680030477.01.T01:intron 65.0%
GCATCGCGAGCCCTCAAGCA+AGG + Chr6:3456843-3456862 MsG0680030477.01.T01:CDS 65.0%
GCCAAAACAGGCCAGGCCGT+AGG - Chr6:3454106-3454125 None:intergenic 65.0%
GGCAGGACCTTCAGGGTCAC+CGG - Chr6:3458405-3458424 None:intergenic 65.0%
GTTAGGGGTGGGAGTAGGCC+AGG - Chr6:3454630-3454649 None:intergenic 65.0%
TAAACAGGCCAGGCCAGGCC+AGG - Chr6:3454128-3454147 None:intergenic 65.0%
TGACCCTGAAGGTCCTGCCG+AGG + Chr6:3458406-3458425 MsG0680030477.01.T01:intron 65.0%
! GCCTACGGCCTGGCCTGTTT+TGG + Chr6:3454102-3454121 MsG0680030477.01.T01:intron 65.0%
!!! TGGCCTGTTTTGGCCTGGCC+TGG + Chr6:3454112-3454131 MsG0680030477.01.T01:intron 65.0%
!!! TGTTTTGGCCTGGCCTGGCC+TGG + Chr6:3454117-3454136 MsG0680030477.01.T01:intron 65.0%
CGTAGGCCCTTGTAGGCGGC+TGG - Chr6:3454089-3454108 None:intergenic 70.0%
GCCAGGCCGTAGGCCCTTGT+AGG - Chr6:3454096-3454115 None:intergenic 70.0%
GCCTACAAGGGCCTACGGCC+TGG + Chr6:3454092-3454111 MsG0680030477.01.T01:intron 70.0%
!!! CGGCCTGGCCTGTTTTGGCC+TGG + Chr6:3454107-3454126 MsG0680030477.01.T01:intron 70.0%
GGAGTAGGCCAGGCCAGGCC+AGG - Chr6:3454620-3454639 None:intergenic 75.0%
GGGTGGGAGTAGGCCAGGCC+AGG - Chr6:3454625-3454644 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr6 gene 3453085 3459539 3453085 ID=MsG0680030477.01;Name=MsG0680030477.01
Chr6 mRNA 3453085 3459539 3453085 ID=MsG0680030477.01.T01;Parent=MsG0680030477.01;Name=MsG0680030477.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0.16|0.42|1|1|1|7|398|357
Chr6 exon 3453085 3453174 3453085 ID=MsG0680030477.01.T01:exon:3322;Parent=MsG0680030477.01.T01
Chr6 exon 3453298 3453411 3453298 ID=MsG0680030477.01.T01:exon:3323;Parent=MsG0680030477.01.T01
Chr6 exon 3456282 3456572 3456282 ID=MsG0680030477.01.T01:exon:3324;Parent=MsG0680030477.01.T01
Chr6 exon 3456843 3456952 3456843 ID=MsG0680030477.01.T01:exon:3325;Parent=MsG0680030477.01.T01
Chr6 exon 3457630 3457825 3457630 ID=MsG0680030477.01.T01:exon:3326;Parent=MsG0680030477.01.T01
Chr6 exon 3458759 3458830 3458759 ID=MsG0680030477.01.T01:exon:3327;Parent=MsG0680030477.01.T01
Chr6 exon 3458941 3459539 3458941 ID=MsG0680030477.01.T01:exon:3328;Parent=MsG0680030477.01.T01
Chr6 CDS 3453085 3453174 3453085 ID=MsG0680030477.01.T01:cds;Parent=MsG0680030477.01.T01
Chr6 CDS 3453298 3453411 3453298 ID=MsG0680030477.01.T01:cds;Parent=MsG0680030477.01.T01
Chr6 CDS 3456282 3456572 3456282 ID=MsG0680030477.01.T01:cds;Parent=MsG0680030477.01.T01
Chr6 CDS 3456843 3456952 3456843 ID=MsG0680030477.01.T01:cds;Parent=MsG0680030477.01.T01
Chr6 CDS 3457630 3457825 3457630 ID=MsG0680030477.01.T01:cds;Parent=MsG0680030477.01.T01
Chr6 CDS 3458759 3458830 3458759 ID=MsG0680030477.01.T01:cds;Parent=MsG0680030477.01.T01
Chr6 CDS 3458941 3459141 3458941 ID=MsG0680030477.01.T01:cds;Parent=MsG0680030477.01.T01
Chr6 three_prime_UTR 3459142 3459539 3459142 ID=MsG0680030477.01.T01:three_prime_utr;Parent=MsG0680030477.01.T01
Gene Sequence

>MsG0680030477.01.T01

ATGTCATTCTTGCTCTCTTTGGCTATCTTTCTTAATGGATTGTGTTGGACAACATATGCTTTCATCAGCCCCTTCGACATTTATCTCCTGGTCAGCAATGGTATTGGTGCAATCTCAGGTCTTGTTCAGCTCATATTATATGTTTATTTTTGGTGCAAGGGAGAAAATAAGAATGATGATGCTAATCACAATTCAAATCTAGCTAAAGGAAAATCATTTTGCTTAAAGCAATGTGCGATATCTTTAGCACTTGCGGTCGGGTTAATAACAGGAGTTCCTACGTTGGGGTTGCCTAACGATGCACATGCAGCTAACCCCGTTTTACCTGATCTGTCTGTATTGATATCTGGACCGCCAATTAAGGACCCTGGGGCATTGTTGAGATATGGTCTTCCTATTGACAATAAGGCGATTAGAGAAGTTCAAAAACCACTTGAAGATATTACTGATAGTCTCAAGATTTCTGGAGTCAAGGCACTCGACTCTGTCGAAAGAGCATCGCGAGCCCTCAAGCAAGGTAAGACATTAATTATATCAGGTTTAGCTGAATCAAAGAAAGAACATGGAATTGAACTGCTTGATAAGCTGGAAGCTGGTATCGATGATGTTGAAGAAGACATGGTTGATGGATTTCCATATGAAGTGCCTGAGGAATACCGAAATTTGCCTTTATTGAAAGGGAGAGCAGCTGTAGATATGAAGGTCAAGATTAAAGACAATCCAAACTTAGAGGAATGTGTGTTCCACATAGTTCTTGATGGTTATAATGCCCCTGTAACTGCCGGCAATTTCGTTGACTTGGAGCTTGGTCTATACAAGGCTCAAACAAAGCTTCCGTTTAATGCATTTGGAACAATGGCGATGGCAAGAGATGAATTTGAGGACAACTCTGGCTCTAGCCAAGTATTTTGGCTATTGAAAGAAAGTGAGCTAACTCCAAGCAATGCCAACATATTGGATGGTAGATATGCAGTTTTTGGCTATGTAACAGAAAATGAAGATTTCTTGGCAGACCTTAAGGTTGGTGATGTCATAGAATCCATTCAAGTTGTTTCTGGTTTGGATAATTTGTGA

Protein sequence

>MsG0680030477.01.T01

MSFLLSLAIFLNGLCWTTYAFISPFDIYLLVSNGIGAISGLVQLILYVYFWCKGENKNDDANHNSNLAKGKSFCLKQCAISLALAVGLITGVPTLGLPNDAHAANPVLPDLSVLISGPPIKDPGALLRYGLPIDNKAIREVQKPLEDITDSLKISGVKALDSVERASRALKQGKTLIISGLAESKKEHGIELLDKLEAGIDDVEEDMVDGFPYEVPEEYRNLPLLKGRAAVDMKVKIKDNPNLEECVFHIVLDGYNAPVTAGNFVDLELGLYKAQTKLPFNAFGTMAMARDEFEDNSGSSQVFWLLKESELTPSNANILDGRYAVFGYVTENEDFLADLKVGDVIESIQVVSGLDNL*