AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011162.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011162.01.T01 MTR_2g099910 93.870 261 14 2 4 262 41 301 6.02e-177 491
MsG0280011162.01.T01 MTR_2g099910 98.104 211 4 0 4 214 41 251 3.76e-150 420
MsG0280011162.01.T01 MTR_2g099910 94.359 195 8 1 4 198 41 232 5.20e-131 371
MsG0280011162.01.T01 MTR_8g028120 56.540 237 102 1 10 246 2 237 1.46e-92 275
MsG0280011162.01.T01 MTR_8g088900 33.054 239 157 2 10 246 15 252 3.19e-35 130
MsG0280011162.01.T01 MTR_8g102470 30.638 235 161 2 10 243 13 246 4.19e-33 123
MsG0280011162.01.T01 MTR_8g102470 30.638 235 161 2 10 243 37 270 4.36e-33 123
MsG0280011162.01.T01 MTR_2g030400 33.480 227 136 4 2 214 32 257 7.10e-28 108
MsG0280011162.01.T01 MTR_2g030400 32.743 226 139 3 2 214 32 257 1.40e-27 108
MsG0280011162.01.T01 MTR_2g030400 32.743 226 139 3 2 214 32 257 2.48e-27 108
MsG0280011162.01.T01 MTR_2g030400 32.743 226 139 3 2 214 32 257 4.14e-27 108
MsG0280011162.01.T01 MTR_6g069685 25.214 234 170 3 6 235 322 554 8.95e-17 80.5
MsG0280011162.01.T01 MTR_6g069685 20.889 225 175 2 11 232 7 231 6.44e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011162.01.T01 AT1G17650 83.475 236 39 0 11 246 10 245 5.39e-145 409
MsG0280011162.01.T01 AT1G17650 83.475 236 39 0 11 246 69 304 1.14e-143 407
MsG0280011162.01.T01 AT3G25530 56.471 255 109 2 10 262 2 256 3.64e-94 279
MsG0280011162.01.T01 AT3G25530 54.510 255 103 3 10 262 2 245 5.94e-90 268
MsG0280011162.01.T01 AT3G25530 57.843 204 86 0 10 213 2 205 7.58e-78 235
MsG0280011162.01.T01 AT4G29120 32.787 244 160 3 3 243 30 272 3.33e-33 124
MsG0280011162.01.T01 AT4G20930 32.719 217 132 3 11 214 40 255 9.02e-28 109
MsG0280011162.01.T01 AT1G71170 29.091 220 155 1 16 235 21 239 1.58e-24 100
MsG0280011162.01.T01 AT1G71180 27.727 220 158 1 16 235 42 260 3.34e-22 94.4
MsG0280011162.01.T01 AT4G20930 31.492 181 110 4 47 214 4 183 6.86e-19 84.3
MsG0280011162.01.T01 AT1G18270 27.826 230 161 3 10 235 323 551 2.99e-18 85.1
MsG0280011162.01.T01 AT1G18270 22.414 232 177 2 11 239 5 236 1.99e-12 67.8
MsG0280011162.01.T01 AT1G18270 27.826 230 161 3 10 235 324 552 2.99e-18 85.1
MsG0280011162.01.T01 AT1G18270 22.747 233 176 3 11 239 5 237 6.10e-11 63.2
MsG0280011162.01.T01 AT1G18270 27.826 230 161 3 10 235 323 551 3.14e-18 85.1
MsG0280011162.01.T01 AT1G18270 22.414 232 177 2 11 239 5 236 1.80e-12 67.8
MsG0280011162.01.T01 AT1G18270 27.826 230 161 3 10 235 323 551 3.20e-18 85.1
MsG0280011162.01.T01 AT1G18270 22.414 232 177 2 11 239 5 236 1.87e-12 67.8

Find 65 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACTACAGGCTCCAGTTTC+AGG 0.167120 2:+80388125 MsG0280011162.01.T01:intron
GACACTTCTAAATTGATTAA+TGG 0.238964 2:+80387898 MsG0280011162.01.T01:CDS
TTGCTCTCACACAGGATTAA+TGG 0.260951 2:+80389070 MsG0280011162.01.T01:CDS
AATACCTCCACTAGTACTTT+TGG 0.295746 2:-80388750 None:intergenic
TGAAACGGTTGCTCCGTTCT+TGG 0.330518 2:+80388389 MsG0280011162.01.T01:CDS
TGCTCCGTTCTTGGACATCA+TGG 0.351778 2:+80388398 MsG0280011162.01.T01:CDS
TACTTCTGAGTGAGAAAGTT+GGG 0.371641 2:+80388721 MsG0280011162.01.T01:CDS
CGAGTACATTGGAGCACTAA+TGG 0.376150 2:-80388927 None:intergenic
TTGATCTCACTGTTTGGAAT+AGG 0.380244 2:+80386828 MsG0280011162.01.T01:CDS
TGTGAGAGCAAAACTAATAC+TGG 0.397615 2:-80389058 None:intergenic
TCCATTGGTTTATAGTATGA+TGG 0.398814 2:+80388680 MsG0280011162.01.T01:intron
TTGGCTCCCAAGCTGATTAG+AGG 0.408502 2:-80386869 None:intergenic
TACCTTGGTGATGTTGGAAA+TGG 0.412205 2:+80388534 MsG0280011162.01.T01:CDS
TGATGAGATTTAGAGCCATT+GGG 0.412792 2:-80386523 None:intergenic
TTGATGAGATTTAGAGCCAT+TGG 0.428876 2:-80386524 None:intergenic
ATCAATTGTCCATCTTCTGC+TGG 0.438341 2:-80388158 None:intergenic
GCTCTAAATCTCATCAAAGC+TGG 0.445265 2:+80386530 MsG0280011162.01.T01:CDS
GCTCCGTTCTTGGACATCAT+GGG 0.452907 2:+80388399 MsG0280011162.01.T01:CDS
TAGAGGATCACATTTGCTCT+TGG 0.467382 2:-80386852 None:intergenic
AATATACACACCGCACTTTG+AGG 0.467951 2:-80387080 None:intergenic
AATGGAATCGGTCCAGGAAA+AGG 0.472968 2:+80387202 MsG0280011162.01.T01:CDS
GTAGAGTTGATCTCACTGTT+TGG 0.477694 2:+80386822 MsG0280011162.01.T01:intron
CAAGATGCCGCTACTTCCTC+GGG 0.490598 2:-80387029 None:intergenic
TGGATAATTTGACTGTATCA+TGG 0.493372 2:-80388963 None:intergenic
CAGAAGTAAACCTTCAGAAA+AGG 0.493510 2:-80388706 None:intergenic
ACAAGATGCCGCTACTTCCT+CGG 0.493713 2:-80387030 None:intergenic
CGACAGAAATCTTTATGAAA+CGG 0.495971 2:+80388374 MsG0280011162.01.T01:CDS
CATGGAGTTGCAAATGGAAT+CGG 0.504636 2:+80387190 MsG0280011162.01.T01:CDS
TGTGATCCTCTAATCAGCTT+GGG 0.506829 2:+80386863 MsG0280011162.01.T01:CDS
GGAAAGCATGGAGTTGCAAA+TGG 0.510181 2:+80387184 MsG0280011162.01.T01:CDS
GTTGCAAATGGAATCGGTCC+AGG 0.510652 2:+80387196 MsG0280011162.01.T01:CDS
GCCGCTACTTCCTCGGGAGA+AGG 0.514121 2:-80387023 None:intergenic
CAATTGATATTTCTTACAGC+AGG 0.514852 2:+80388173 MsG0280011162.01.T01:CDS
CTCTAAATCTCATCAAAGCT+GGG 0.519329 2:+80386531 MsG0280011162.01.T01:CDS
GCTTGTTGTCAATATGATCA+TGG 0.529260 2:+80388569 MsG0280011162.01.T01:CDS
TTACTTCTGAGTGAGAAAGT+TGG 0.537292 2:+80388720 MsG0280011162.01.T01:CDS
AGGGATTGACACCCCTCCAC+GGG 0.539501 2:+80386469 MsG0280011162.01.T01:CDS
CACACAGGATTAATGGTGAC+AGG 0.545976 2:+80389077 MsG0280011162.01.T01:CDS
CGGTATCATGGGCACCCCAA+TGG 0.546961 2:+80386508 MsG0280011162.01.T01:CDS
CAGGGATTGACACCCCTCCA+CGG 0.548362 2:+80386468 MsG0280011162.01.T01:CDS
ATGGAATCGGTCCAGGAAAA+GGG 0.552727 2:+80387203 MsG0280011162.01.T01:CDS
ATGTGATCCTCTAATCAGCT+TGG 0.553137 2:+80386862 MsG0280011162.01.T01:CDS
TAATTTGACTGTATCATGGA+TGG 0.558193 2:-80388959 None:intergenic
CTCCGTTCTTGGACATCATG+GGG 0.560146 2:+80388400 MsG0280011162.01.T01:CDS
GGGCCTTTCATCGAGTACAT+TGG 0.561131 2:-80388938 None:intergenic
ACCTTCTCCCGAGGAAGTAG+CGG 0.571231 2:+80387022 MsG0280011162.01.T01:CDS
CTTGTTGTCAATATGATCAT+GGG 0.573368 2:+80388570 MsG0280011162.01.T01:CDS
GCTCCAATGTACTCGATGAA+AGG 0.578127 2:+80388935 MsG0280011162.01.T01:CDS
TTGTCAATATGATCATGGGC+AGG 0.583553 2:+80388574 MsG0280011162.01.T01:CDS
AATGGACAGATAAAATCCAC+TGG 0.583965 2:+80387916 MsG0280011162.01.T01:CDS
ATTGACACCCCTCCACGGGT+TGG 0.588549 2:+80386473 MsG0280011162.01.T01:CDS
ACTTTGAGGATCAGCAAGCA+TGG 0.590719 2:-80387066 None:intergenic
AATTTGACTGTATCATGGAT+GGG 0.592762 2:-80388958 None:intergenic
GATGTTGCTTGTGGAAAGCA+TGG 0.592782 2:+80387172 MsG0280011162.01.T01:CDS
GATGAGATTTAGAGCCATTG+GGG 0.598554 2:-80386522 None:intergenic
GCTAGATCCAAAAGTACTAG+TGG 0.600091 2:+80388743 MsG0280011162.01.T01:CDS
TCCCCTAAAACATCAGCAGA+AGG 0.603322 2:+80388994 MsG0280011162.01.T01:CDS
GGATGTTTCAACTGTTGATG+TGG 0.612786 2:+80387876 MsG0280011162.01.T01:CDS
TATCAGGTGGATGTTGCTTG+TGG 0.626476 2:+80387163 MsG0280011162.01.T01:intron
TTCCCCATGATGTCCAAGAA+CGG 0.640738 2:-80388402 None:intergenic
AGATCCAAAAGTACTAGTGG+AGG 0.648546 2:+80388746 MsG0280011162.01.T01:CDS
CAGATATAAACCTTCTCCCG+AGG 0.649506 2:+80387013 MsG0280011162.01.T01:intron
TTGGGGTGCCCATGATACCG+AGG 0.671988 2:-80386505 None:intergenic
GCTTGCTGATCCTCAAAGTG+CGG 0.674741 2:+80387070 MsG0280011162.01.T01:CDS
CTCCATTTCCAACATCACCA+AGG 0.698022 2:-80388536 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAATATATATAGATATTA+AGG - Chr2:80387848-80387867 None:intergenic 10.0%
!! TACTAATAACTAATTAAATT+TGG + Chr2:80388214-80388233 MsG0280011162.01.T01:intron 10.0%
!! AAATAACCATTCTAATATAT+GGG + Chr2:80388862-80388881 MsG0280011162.01.T01:intron 15.0%
!!! GATCATATATTCTTTTTTAA+TGG - Chr2:80388447-80388466 None:intergenic 15.0%
!! AATAACCATTCTAATATATG+GGG + Chr2:80388863-80388882 MsG0280011162.01.T01:intron 20.0%
!! ATAACTAATTAAATTTGGTC+TGG + Chr2:80388219-80388238 MsG0280011162.01.T01:intron 20.0%
!! GAAACAATCAAATAGATATA+TGG - Chr2:80387482-80387501 None:intergenic 20.0%
!! GAAATAACCATTCTAATATA+TGG + Chr2:80388861-80388880 MsG0280011162.01.T01:intron 20.0%
!! TAACTAATTAAATTTGGTCT+GGG + Chr2:80388220-80388239 MsG0280011162.01.T01:intron 20.0%
!! TATGAATTAATTGTTTGCTT+TGG - Chr2:80388476-80388495 None:intergenic 20.0%
!! TGGATAAACAACTTAATTAT+GGG - Chr2:80387818-80387837 None:intergenic 20.0%
!! TTAGATGAATATGATTTAGT+TGG + Chr2:80388053-80388072 MsG0280011162.01.T01:intron 20.0%
!! TTGGATAAACAACTTAATTA+TGG - Chr2:80387819-80387838 None:intergenic 20.0%
!!! CATATATTCTTTTTTAATGG+AGG - Chr2:80388444-80388463 None:intergenic 20.0%
!!! GAAAATTTTGAGAATGAATT+AGG - Chr2:80386797-80386816 None:intergenic 20.0%
!!! TATATATATTTTCAGATACG+TGG + Chr2:80387855-80387874 MsG0280011162.01.T01:intron 20.0%
!!! TATTTGTTTTATTCCATATC+AGG + Chr2:80387147-80387166 MsG0280011162.01.T01:intron 20.0%
!!! TTTTCAATAGAAAGATGATA+AGG - Chr2:80387366-80387385 None:intergenic 20.0%
!!! TTTTTTTCAAGTGTAAGTAA+TGG - Chr2:80386911-80386930 None:intergenic 20.0%
! AAAATAAAACCTATAGTGCA+TGG + Chr2:80388792-80388811 MsG0280011162.01.T01:intron 25.0%
! ATCTTAGTTTCTGTAACTAT+TGG - Chr2:80388326-80388345 None:intergenic 25.0%
! ATGAATATGATTTAGTTGGA+TGG + Chr2:80388057-80388076 MsG0280011162.01.T01:intron 25.0%
! ATGACCAAAACATACATATT+TGG - Chr2:80386671-80386690 None:intergenic 25.0%
! ATGCAAGTTACTCTTTAATT+TGG + Chr2:80387995-80388014 MsG0280011162.01.T01:intron 25.0%
! GACACTTCTAAATTGATTAA+TGG + Chr2:80387898-80387917 MsG0280011162.01.T01:CDS 25.0%
! TATTTCTTGCATGATTTAGT+TGG + Chr2:80388026-80388045 MsG0280011162.01.T01:intron 25.0%
!! AAACAGGAGACAAATTTTAA+AGG - Chr2:80388601-80388620 None:intergenic 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + Chr2:80387821-80387840 MsG0280011162.01.T01:intron 25.0%
!! GTTACCAAATATGTATGTTT+TGG + Chr2:80386664-80386683 MsG0280011162.01.T01:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG + Chr2:80387822-80387841 MsG0280011162.01.T01:intron 25.0%
!! TTTTAACGTAATGACATGAT+AGG + Chr2:80387504-80387523 MsG0280011162.01.T01:intron 25.0%
!!! AGTTTTTTCATAAGCTATTC+TGG - Chr2:80387699-80387718 None:intergenic 25.0%
!!! TGATCATTTGTTGTAGAAAT+AGG + Chr2:80387751-80387770 MsG0280011162.01.T01:intron 25.0%
AATTAAATTTGGTCTGGGAA+AGG + Chr2:80388225-80388244 MsG0280011162.01.T01:intron 30.0%
AATTTGACTGTATCATGGAT+GGG - Chr2:80388961-80388980 None:intergenic 30.0%
AGATGGAAGAATTGTTGTAT+TGG - Chr2:80387326-80387345 None:intergenic 30.0%
ATGTTCATGGAGAATAGATA+GGG - Chr2:80387977-80387996 None:intergenic 30.0%
CAATTGATATTTCTTACAGC+AGG + Chr2:80388173-80388192 MsG0280011162.01.T01:CDS 30.0%
CCTAATGTCTATCAAATTGT+AGG - Chr2:80387272-80387291 None:intergenic 30.0%
CCTACAATTTGATAGACATT+AGG + Chr2:80387269-80387288 MsG0280011162.01.T01:intron 30.0%
CGACAGAAATCTTTATGAAA+CGG + Chr2:80388374-80388393 MsG0280011162.01.T01:CDS 30.0%
GCAAAATTTCCATTTCGTAA+GGG - Chr2:80388889-80388908 None:intergenic 30.0%
GGAACATATTGAAGATACTT+TGG - Chr2:80387251-80387270 None:intergenic 30.0%
TAATTTGACTGTATCATGGA+TGG - Chr2:80388962-80388981 None:intergenic 30.0%
TCAAATAGAAGCAAAGAAAC+AGG - Chr2:80388617-80388636 None:intergenic 30.0%
TCAACATAATCATCAACACA+AGG - Chr2:80388640-80388659 None:intergenic 30.0%
TGCAAAATTTCCATTTCGTA+AGG - Chr2:80388890-80388909 None:intergenic 30.0%
TGGAAAGATGAATTCATACT+TGG - Chr2:80386891-80386910 None:intergenic 30.0%
TGGATAATTTGACTGTATCA+TGG - Chr2:80388966-80388985 None:intergenic 30.0%
! ATGCAGTCTAAATTTTACCT+TGG + Chr2:80388519-80388538 MsG0280011162.01.T01:intron 30.0%
! ATTTTGCAGGTAATTTCACA+AGG + Chr2:80388902-80388921 MsG0280011162.01.T01:intron 30.0%
! CTTGTTGTCAATATGATCAT+GGG + Chr2:80388570-80388589 MsG0280011162.01.T01:CDS 30.0%
! GATATAGTCTTTGTTTGTCA+AGG - Chr2:80386726-80386745 None:intergenic 30.0%
! TTACGAAATGGAAATTTTGC+AGG + Chr2:80388889-80388908 MsG0280011162.01.T01:intron 30.0%
! TTTCTTTCTCTCTTTTCCAT+TGG + Chr2:80388665-80388684 MsG0280011162.01.T01:intron 30.0%
!! GTGTTTGGTATATGTTTTGA+TGG + Chr2:80387543-80387562 MsG0280011162.01.T01:intron 30.0%
!! TAATTGTTTGCTTTGGAAGA+AGG - Chr2:80388469-80388488 None:intergenic 30.0%
!! TCCATTGGTTTATAGTATGA+TGG + Chr2:80388680-80388699 MsG0280011162.01.T01:intron 30.0%
!! TTGTTTTATTCCATATCAGG+TGG + Chr2:80387150-80387169 MsG0280011162.01.T01:intron 30.0%
!!! AAATTTTACCTTGGTGATGT+TGG + Chr2:80388528-80388547 MsG0280011162.01.T01:CDS 30.0%
!!! ATTCTTTTTTAATGGAGGAC+AGG - Chr2:80388439-80388458 None:intergenic 30.0%
!!! CACAATTTATTTTAGCTCAC+AGG + Chr2:80387669-80387688 MsG0280011162.01.T01:intron 30.0%
AAGCAAATCCAAATAAACCC+AGG - Chr2:80387570-80387589 None:intergenic 35.0%
AATGGACAGATAAAATCCAC+TGG + Chr2:80387916-80387935 MsG0280011162.01.T01:CDS 35.0%
AGATACTGTGTTCAAGTGTT+TGG + Chr2:80387528-80387547 MsG0280011162.01.T01:intron 35.0%
ATAAACACACCATGCACTAT+AGG - Chr2:80388804-80388823 None:intergenic 35.0%
ATAGATATTAAGGCCCTGTT+TGG - Chr2:80387838-80387857 None:intergenic 35.0%
CAGAAGTAAACCTTCAGAAA+AGG - Chr2:80388709-80388728 None:intergenic 35.0%
CATATTGAGAGAGCTAAAGA+TGG - Chr2:80387343-80387362 None:intergenic 35.0%
CATGTTCATGGAGAATAGAT+AGG - Chr2:80387978-80387997 None:intergenic 35.0%
CTCTAAATCTCATCAAAGCT+GGG + Chr2:80386531-80386550 MsG0280011162.01.T01:CDS 35.0%
GCCATCATACTATAAACCAA+TGG - Chr2:80388684-80388703 None:intergenic 35.0%
GCTTATTTGAACTTATCTGC+TGG + Chr2:80387586-80387605 MsG0280011162.01.T01:intron 35.0%
GTCTTTACTCTTGACAACTA+TGG - Chr2:80387423-80387442 None:intergenic 35.0%
TACAAGCAGAGAATTCAACT+AGG + Chr2:80388269-80388288 MsG0280011162.01.T01:intron 35.0%
TACTTCTGAGTGAGAAAGTT+GGG + Chr2:80388721-80388740 MsG0280011162.01.T01:CDS 35.0%
TCTTGCATGATTTAGTTGGA+TGG + Chr2:80388030-80388049 MsG0280011162.01.T01:intron 35.0%
TGTGAGAGCAAAACTAATAC+TGG - Chr2:80389061-80389080 None:intergenic 35.0%
TTACTTCTGAGTGAGAAAGT+TGG + Chr2:80388720-80388739 MsG0280011162.01.T01:CDS 35.0%
! AAGAGTAACTTGCATGTTCA+TGG - Chr2:80387990-80388009 None:intergenic 35.0%
! AATACCTCCACTAGTACTTT+TGG - Chr2:80388753-80388772 None:intergenic 35.0%
! CTATGAAAACAGCTAGCTTA+TGG + Chr2:80387640-80387659 MsG0280011162.01.T01:intron 35.0%
! TAAATATAGCACCCTTTTCC+TGG - Chr2:80387217-80387236 None:intergenic 35.0%
! TGATGAGATTTAGAGCCATT+GGG - Chr2:80386526-80386545 None:intergenic 35.0%
! TTGATCTCACTGTTTGGAAT+AGG + Chr2:80386828-80386847 MsG0280011162.01.T01:CDS 35.0%
! TTGATGAGATTTAGAGCCAT+TGG - Chr2:80386527-80386546 None:intergenic 35.0%
!! ATCCACTGGAGCATTATTTT+TGG + Chr2:80387930-80387949 MsG0280011162.01.T01:CDS 35.0%
!! CATAAGCTAGCTGTTTTCAT+AGG - Chr2:80387642-80387661 None:intergenic 35.0%
!! GCTTGTTGTCAATATGATCA+TGG + Chr2:80388569-80388588 MsG0280011162.01.T01:CDS 35.0%
!!! GTATATGTTTTGATGGTCCT+GGG + Chr2:80387550-80387569 MsG0280011162.01.T01:intron 35.0%
!!! TATTAGTTTTGCTCTCACAC+AGG + Chr2:80389062-80389081 MsG0280011162.01.T01:CDS 35.0%
AAGGGCCCCATATATTAGAA+TGG - Chr2:80388871-80388890 None:intergenic 40.0%
AATATACACACCGCACTTTG+AGG - Chr2:80387083-80387102 None:intergenic 40.0%
AGCCATTTCTGTGTAACTAC+AGG + Chr2:80388112-80388131 MsG0280011162.01.T01:intron 40.0%
AGCCTGTAGTTACACAGAAA+TGG - Chr2:80388117-80388136 None:intergenic 40.0%
AGTGAGATCAACTCTACAAC+AGG - Chr2:80386819-80386838 None:intergenic 40.0%
AGTGCATGGTGTGTTTATGT+CGG + Chr2:80388806-80388825 MsG0280011162.01.T01:intron 40.0%
ATCAATTGTCCATCTTCTGC+TGG - Chr2:80388161-80388180 None:intergenic 40.0%
ATGTGATCCTCTAATCAGCT+TGG + Chr2:80386862-80386881 MsG0280011162.01.T01:CDS 40.0%
CATGGAGTTGCAAATGGAAT+CGG + Chr2:80387190-80387209 MsG0280011162.01.T01:CDS 40.0%
CTCCAAAAATAATGCTCCAG+TGG - Chr2:80387935-80387954 None:intergenic 40.0%
GGATGTTTCAACTGTTGATG+TGG + Chr2:80387876-80387895 MsG0280011162.01.T01:CDS 40.0%
GTCTTCTATCTAGTGACATG+TGG + Chr2:80386762-80386781 MsG0280011162.01.T01:intron 40.0%
TAAGCACTTGTGAGACTGTT+TGG + Chr2:80387611-80387630 MsG0280011162.01.T01:intron 40.0%
TAGAGGATCACATTTGCTCT+TGG - Chr2:80386855-80386874 None:intergenic 40.0%
TGTGATCCTCTAATCAGCTT+GGG + Chr2:80386863-80386882 MsG0280011162.01.T01:CDS 40.0%
TTACACAGAAATGGCTTCAC+AGG - Chr2:80388108-80388127 None:intergenic 40.0%
TTGCTCTCACACAGGATTAA+TGG + Chr2:80389070-80389089 MsG0280011162.01.T01:CDS 40.0%
TTGTCAATATGATCATGGGC+AGG + Chr2:80388574-80388593 MsG0280011162.01.T01:CDS 40.0%
! ATGATGGCATCCTTTTCTGA+AGG + Chr2:80388696-80388715 MsG0280011162.01.T01:CDS 40.0%
! GATGAGATTTAGAGCCATTG+GGG - Chr2:80386525-80386544 None:intergenic 40.0%
! GCTCTAAATCTCATCAAAGC+TGG + Chr2:80386530-80386549 MsG0280011162.01.T01:CDS 40.0%
! GTAGAGTTGATCTCACTGTT+TGG + Chr2:80386822-80386841 MsG0280011162.01.T01:intron 40.0%
! TGCCTTCTGCTGATGTTTTA+GGG - Chr2:80388999-80389018 None:intergenic 40.0%
! TTGATGGTCCTGGGTTTATT+TGG + Chr2:80387559-80387578 MsG0280011162.01.T01:intron 40.0%
! TTGCCTTCTGCTGATGTTTT+AGG - Chr2:80389000-80389019 None:intergenic 40.0%
!! AGATCCAAAAGTACTAGTGG+AGG + Chr2:80388746-80388765 MsG0280011162.01.T01:CDS 40.0%
!! GCTAGATCCAAAAGTACTAG+TGG + Chr2:80388743-80388762 MsG0280011162.01.T01:CDS 40.0%
!! TACCTTGGTGATGTTGGAAA+TGG + Chr2:80388534-80388553 MsG0280011162.01.T01:CDS 40.0%
!!! CACTGGAGCATTATTTTTGG+AGG + Chr2:80387933-80387952 MsG0280011162.01.T01:CDS 40.0%
!!! GGTATATGTTTTGATGGTCC+TGG + Chr2:80387549-80387568 MsG0280011162.01.T01:intron 40.0%
!!! TGTTTTAGGGGAAATGCAGT+TGG - Chr2:80388986-80389005 None:intergenic 40.0%
AATGGAATCGGTCCAGGAAA+AGG + Chr2:80387202-80387221 MsG0280011162.01.T01:CDS 45.0%
ATGGAATCGGTCCAGGAAAA+GGG + Chr2:80387203-80387222 MsG0280011162.01.T01:CDS 45.0%
ATTTGGTCTGGGAAAGGAGT+TGG + Chr2:80388231-80388250 MsG0280011162.01.T01:intron 45.0%
CAAGCAACATCCACCTGATA+TGG - Chr2:80387163-80387182 None:intergenic 45.0%
CACACAGGATTAATGGTGAC+AGG + Chr2:80389077-80389096 MsG0280011162.01.T01:CDS 45.0%
CAGATATAAACCTTCTCCCG+AGG + Chr2:80387013-80387032 MsG0280011162.01.T01:intron 45.0%
CTCCATTTCCAACATCACCA+AGG - Chr2:80388539-80388558 None:intergenic 45.0%
GCTCCAATGTACTCGATGAA+AGG + Chr2:80388935-80388954 MsG0280011162.01.T01:CDS 45.0%
TAACTACAGGCTCCAGTTTC+AGG + Chr2:80388125-80388144 MsG0280011162.01.T01:intron 45.0%
TATATGGGGCCCTTACGAAA+TGG + Chr2:80388877-80388896 MsG0280011162.01.T01:intron 45.0%
TCCAAAAAGCCAGCAGAAGA+TGG + Chr2:80388149-80388168 MsG0280011162.01.T01:CDS 45.0%
TCCCCTAAAACATCAGCAGA+AGG + Chr2:80388994-80389013 MsG0280011162.01.T01:CDS 45.0%
TGGTGTGTTTATGTCGGAGT+CGG + Chr2:80388812-80388831 MsG0280011162.01.T01:intron 45.0%
TTCCCCATGATGTCCAAGAA+CGG - Chr2:80388405-80388424 None:intergenic 45.0%
! ACTTTGAGGATCAGCAAGCA+TGG - Chr2:80387069-80387088 None:intergenic 45.0%
! CGAGTACATTGGAGCACTAA+TGG - Chr2:80388930-80388949 None:intergenic 45.0%
! GATGTTGCTTGTGGAAAGCA+TGG + Chr2:80387172-80387191 MsG0280011162.01.T01:CDS 45.0%
! GGAAAGCATGGAGTTGCAAA+TGG + Chr2:80387184-80387203 MsG0280011162.01.T01:CDS 45.0%
! TATCAGGTGGATGTTGCTTG+TGG + Chr2:80387163-80387182 MsG0280011162.01.T01:intron 45.0%
!! GCCTTCTGCTGATGTTTTAG+GGG - Chr2:80388998-80389017 None:intergenic 45.0%
!! TTTTTGGGCCTCGGTATCAT+GGG + Chr2:80386497-80386516 MsG0280011162.01.T01:CDS 45.0%
!!! GGCTTTTTGGAACCTGAAAC+TGG - Chr2:80388140-80388159 None:intergenic 45.0%
!!! TCCATCTTCTGCTGGCTTTT+TGG - Chr2:80388153-80388172 None:intergenic 45.0%
!!! ATTTTATTATATAATATTTC+AGG + Chr2:80388351-80388370 MsG0280011162.01.T01:intron 5.0%
ACAAGATGCCGCTACTTCCT+CGG - Chr2:80387033-80387052 None:intergenic 50.0%
CTCCGTTCTTGGACATCATG+GGG + Chr2:80388400-80388419 MsG0280011162.01.T01:CDS 50.0%
GCTCCGTTCTTGGACATCAT+GGG + Chr2:80388399-80388418 MsG0280011162.01.T01:CDS 50.0%
GGGCCTTTCATCGAGTACAT+TGG - Chr2:80388941-80388960 None:intergenic 50.0%
GTGTTTATGTCGGAGTCGGT+TGG + Chr2:80388816-80388835 MsG0280011162.01.T01:intron 50.0%
GTTGCAAATGGAATCGGTCC+AGG + Chr2:80387196-80387215 MsG0280011162.01.T01:CDS 50.0%
TGAAACGGTTGCTCCGTTCT+TGG + Chr2:80388389-80388408 MsG0280011162.01.T01:CDS 50.0%
TGCTCCGTTCTTGGACATCA+TGG + Chr2:80388398-80388417 MsG0280011162.01.T01:CDS 50.0%
TTGGCTCCCAAGCTGATTAG+AGG - Chr2:80386872-80386891 None:intergenic 50.0%
! GCTTGCTGATCCTCAAAGTG+CGG + Chr2:80387070-80387089 MsG0280011162.01.T01:CDS 50.0%
!! CTTTTTGGGCCTCGGTATCA+TGG + Chr2:80386496-80386515 MsG0280011162.01.T01:CDS 50.0%
!! TCTGGGAAAGGAGTTGGTGA+AGG + Chr2:80388237-80388256 MsG0280011162.01.T01:intron 50.0%
ACCTTCTCCCGAGGAAGTAG+CGG + Chr2:80387022-80387041 MsG0280011162.01.T01:CDS 55.0%
CAAAAAGCCAACCCGTGGAG+GGG - Chr2:80386483-80386502 None:intergenic 55.0%
CAAGATGCCGCTACTTCCTC+GGG - Chr2:80387032-80387051 None:intergenic 55.0%
CCAAAAAGCCAACCCGTGGA+GGG - Chr2:80386484-80386503 None:intergenic 55.0%
! GGAGTCGGTTGGTGCTTAGT+AGG + Chr2:80388827-80388846 MsG0280011162.01.T01:intron 55.0%
!!! CCTCCACGGGTTGGCTTTTT+GGG + Chr2:80386482-80386501 MsG0280011162.01.T01:CDS 55.0%
AGGCCCAAAAAGCCAACCCG+TGG - Chr2:80386488-80386507 None:intergenic 60.0%
AGGGATTGACACCCCTCCAC+GGG + Chr2:80386469-80386488 MsG0280011162.01.T01:CDS 60.0%
ATTGACACCCCTCCACGGGT+TGG + Chr2:80386473-80386492 MsG0280011162.01.T01:CDS 60.0%
CAGGGATTGACACCCCTCCA+CGG + Chr2:80386468-80386487 MsG0280011162.01.T01:CDS 60.0%
CCCAAAAAGCCAACCCGTGG+AGG - Chr2:80386485-80386504 None:intergenic 60.0%
CGGTATCATGGGCACCCCAA+TGG + Chr2:80386508-80386527 MsG0280011162.01.T01:CDS 60.0%
! TTGGGGTGCCCATGATACCG+AGG - Chr2:80386508-80386527 None:intergenic 60.0%
!!! CCCTCCACGGGTTGGCTTTT+TGG + Chr2:80386481-80386500 MsG0280011162.01.T01:CDS 60.0%
!!! CGGGTTGGCTTTTTGGGCCT+CGG + Chr2:80386488-80386507 MsG0280011162.01.T01:CDS 60.0%
GCCGCTACTTCCTCGGGAGA+AGG - Chr2:80387026-80387045 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 80386461 80389105 80386461 ID=MsG0280011162.01;Name=MsG0280011162.01
Chr2 mRNA 80386461 80389105 80386461 ID=MsG0280011162.01.T01;Parent=MsG0280011162.01;Name=MsG0280011162.01.T01;_AED=0.39;_eAED=0.43;_QI=0|1|0.8|1|1|1|10|0|275
Chr2 exon 80386461 80386552 80386461 ID=MsG0280011162.01.T01:exon:17661;Parent=MsG0280011162.01.T01
Chr2 exon 80386826 80386891 80386826 ID=MsG0280011162.01.T01:exon:17662;Parent=MsG0280011162.01.T01
Chr2 exon 80387016 80387091 80387016 ID=MsG0280011162.01.T01:exon:17663;Parent=MsG0280011162.01.T01
Chr2 exon 80387169 80387224 80387169 ID=MsG0280011162.01.T01:exon:17664;Parent=MsG0280011162.01.T01
Chr2 exon 80387870 80387954 80387870 ID=MsG0280011162.01.T01:exon:17665;Parent=MsG0280011162.01.T01
Chr2 exon 80388134 80388194 80388134 ID=MsG0280011162.01.T01:exon:17666;Parent=MsG0280011162.01.T01
Chr2 exon 80388373 80388425 80388373 ID=MsG0280011162.01.T01:exon:17667;Parent=MsG0280011162.01.T01
Chr2 exon 80388525 80388595 80388525 ID=MsG0280011162.01.T01:exon:17668;Parent=MsG0280011162.01.T01
Chr2 exon 80388695 80388767 80388695 ID=MsG0280011162.01.T01:exon:17669;Parent=MsG0280011162.01.T01
Chr2 exon 80388911 80389105 80388911 ID=MsG0280011162.01.T01:exon:17670;Parent=MsG0280011162.01.T01
Chr2 CDS 80386461 80386552 80386461 ID=MsG0280011162.01.T01:cds;Parent=MsG0280011162.01.T01
Chr2 CDS 80386826 80386891 80386826 ID=MsG0280011162.01.T01:cds;Parent=MsG0280011162.01.T01
Chr2 CDS 80387016 80387091 80387016 ID=MsG0280011162.01.T01:cds;Parent=MsG0280011162.01.T01
Chr2 CDS 80387169 80387224 80387169 ID=MsG0280011162.01.T01:cds;Parent=MsG0280011162.01.T01
Chr2 CDS 80387870 80387954 80387870 ID=MsG0280011162.01.T01:cds;Parent=MsG0280011162.01.T01
Chr2 CDS 80388134 80388194 80388134 ID=MsG0280011162.01.T01:cds;Parent=MsG0280011162.01.T01
Chr2 CDS 80388373 80388425 80388373 ID=MsG0280011162.01.T01:cds;Parent=MsG0280011162.01.T01
Chr2 CDS 80388525 80388595 80388525 ID=MsG0280011162.01.T01:cds;Parent=MsG0280011162.01.T01
Chr2 CDS 80388695 80388767 80388695 ID=MsG0280011162.01.T01:cds;Parent=MsG0280011162.01.T01
Chr2 CDS 80388911 80389105 80388911 ID=MsG0280011162.01.T01:cds;Parent=MsG0280011162.01.T01
Gene Sequence

>MsG0280011162.01.T01

CTGTTTTCAGGGATTGACACCCCTCCACGGGTTGGCTTTTTGGGCCTCGGTATCATGGGCACCCCAATGGCTCTAAATCTCATCAAAGCTGGAGTTGATCTCACTGTTTGGAATAGGACCAAGAGCAAATGTGATCCTCTAATCAGCTTGGGAGCCAAATATAAACCTTCTCCCGAGGAAGTAGCGGCATCTTGTGATCTCACGTTTGCCATGCTTGCTGATCCTCAAAGTGCGGTGGATGTTGCTTGTGGAAAGCATGGAGTTGCAAATGGAATCGGTCCAGGAAAAGGATACGTGGATGTTTCAACTGTTGATGTGGACACTTCTAAATTGATTAATGGACAGATAAAATCCACTGGAGCATTATTTTTGGAGGCTCCAGTTTCAGGTTCCAAAAAGCCAGCAGAAGATGGACAATTGATATTTCTTACAGCAGGCGACAGAAATCTTTATGAAACGGTTGCTCCGTTCTTGGACATCATGGGGAAATCTAAATTTTACCTTGGTGATGTTGGAAATGGAGCTGCAATGAAGCTTGTTGTCAATATGATCATGGGCAGTATGATGGCATCCTTTTCTGAAGGTTTACTTCTGAGTGAGAAAGTTGGGCTAGATCCAAAAGTACTAGTGGAGGTAATTTCACAAGGTGCCATTAGTGCTCCAATGTACTCGATGAAAGGCCCATCCATGATACAGTCAAATTATCCAACTGCATTTCCCCTAAAACATCAGCAGAAGGCAAGTAAATGTATATTCTTGTTTGATAGTAACTCTCAAATACCAGTATTAGTTTTGCTCTCACACAGGATTAATGGTGACAGGATCTAA

Protein sequence

>MsG0280011162.01.T01

LFSGIDTPPRVGFLGLGIMGTPMALNLIKAGVDLTVWNRTKSKCDPLISLGAKYKPSPEEVAASCDLTFAMLADPQSAVDVACGKHGVANGIGPGKGYVDVSTVDVDTSKLINGQIKSTGALFLEAPVSGSKKPAEDGQLIFLTAGDRNLYETVAPFLDIMGKSKFYLGDVGNGAAMKLVVNMIMGSMMASFSEGLLLSEKVGLDPKVLVEVISQGAISAPMYSMKGPSMIQSNYPTAFPLKHQQKASKCIFLFDSNSQIPVLVLLSHRINGDRI*