AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080049039.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080049039.01.T01 MTR_8g006995 96.748 246 6 1 29 272 29 274 5.02e-176 488
MsG0080049039.01.T01 MTR_8g007000 88.312 77 9 0 186 262 618 694 5.93e-39 145
MsG0080049039.01.T01 MTR_3g107920 36.364 209 127 4 48 254 128 332 1.14e-28 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080049039.01.T01 AT1G07320 63.218 261 89 3 5 259 3 262 9.59e-105 307
MsG0080049039.01.T01 AT1G07320 63.218 261 89 3 5 259 3 262 9.59e-105 307
MsG0080049039.01.T01 AT1G07320 63.218 261 89 3 5 259 3 262 1.01e-104 307
MsG0080049039.01.T01 AT1G07320 63.218 261 89 3 5 259 3 262 1.09e-104 307
MsG0080049039.01.T01 AT2G20060 35.294 204 122 5 53 252 91 288 2.07e-27 108

Find 79 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGGAGTGAATTTAATTT+TGG 0.132566 contig627end:+12532 MsG0080049039.01.T01:intergenic
ATACTCCAATCCCTCGGTTT+AGG 0.216239 contig627end:+12197 MsG0080049039.01.T01:intergenic
TTAGAATGTGAATTTGAATT+TGG 0.246363 contig627end:+12515 MsG0080049039.01.T01:intergenic
CGCGGACTTCAGCGCGTGTT+AGG 0.273847 contig627end:+12318 MsG0080049039.01.T01:intergenic
TACTCCAATCCCTCGGTTTA+GGG 0.280606 contig627end:+12198 MsG0080049039.01.T01:intergenic
GAAAACCGGCCGAGCACGTC+AGG 0.350829 contig627end:-12267 MsG0080049039.01.T01:exon
CCTATCTCTTCAAAATTGAT+TGG 0.385816 contig627end:+12706 MsG0080049039.01.T01:intergenic
TTGTTGGCTAGTAGAAATAT+TGG 0.388556 contig627end:-11972 MsG0080049039.01.T01:exon
GGCGAGTGCGGCGGTGAATA+CGG 0.409725 contig627end:-12129 MsG0080049039.01.T01:exon
TTCAAATAATCCACAGCATC+AGG 0.409918 contig627end:+11876 MsG0080049039.01.T01:intergenic
GATTATTTGAATGGTAGGTA+TGG 0.413472 contig627end:-11864 MsG0080049039.01.T01:exon
TCCTTCTCCGGCGAGAAAAT+CGG 0.427807 contig627end:-12449 MsG0080049039.01.T01:exon
CGCGCTGAAGTCCGCGGTGG+TGG 0.431696 contig627end:-12311 MsG0080049039.01.T01:exon
GAGTATTAAGATTAATAAGA+AGG 0.437393 contig627end:-12180 MsG0080049039.01.T01:exon
ATTATTTGAATGGTAGGTAT+GGG 0.441937 contig627end:-11863 MsG0080049039.01.T01:exon
AAAGAAAGAGAAGTTGAAGT+TGG 0.442195 contig627end:+12590 MsG0080049039.01.T01:intergenic
GGAACCCTGACGTGCTCGGC+CGG 0.453508 contig627end:+12262 MsG0080049039.01.T01:intergenic
GAAGTAGTAGTTGTAGAAGA+TGG 0.454540 contig627end:-11804 MsG0080049039.01.T01:exon
CCCTACAACCAAAAGAAAAC+CGG 0.459895 contig627end:-12281 MsG0080049039.01.T01:exon
CTCTTCAAAATTGATTGGTG+TGG 0.460513 contig627end:+12711 MsG0080049039.01.T01:intergenic
GTTGTAGAAGATGGTGAAGA+AGG 0.461258 contig627end:-11795 MsG0080049039.01.T01:intron
GATGCTGTGGATTATTTGAA+TGG 0.463739 contig627end:-11873 MsG0080049039.01.T01:exon
TCGGCCCTAAACCGAGGGAT+TGG 0.466690 contig627end:-12202 MsG0080049039.01.T01:exon
AGTGGCGAGTTTGCAAGAAA+TGG 0.474159 contig627end:+12484 MsG0080049039.01.T01:intergenic
CTCCCACTCCTCTCCTTCTC+CGG 0.478305 contig627end:-12461 MsG0080049039.01.T01:exon
GGTGAATACGGTTGTGGTGG+AGG 0.478549 contig627end:-12117 MsG0080049039.01.T01:exon
CGCCGGAGAAGGAGAGGAGT+GGG 0.479277 contig627end:+12459 MsG0080049039.01.T01:intergenic
GAGTTTGCGGATGAGTTTGA+GGG 0.483719 contig627end:-12095 MsG0080049039.01.T01:exon
GGAGTTTGCGGATGAGTTTG+AGG 0.483961 contig627end:-12096 MsG0080049039.01.T01:exon
GCGGACTTCAGCGCGTGTTA+GGG 0.488060 contig627end:+12319 MsG0080049039.01.T01:intergenic
GCCGAAAATCACACCACCGC+CGG 0.497932 contig627end:+12220 MsG0080049039.01.T01:intergenic
GGCTATGAAACGATGGGGAT+TGG 0.498185 contig627end:-12045 MsG0080049039.01.T01:exon
GGTTGTGGTGGAGGAGTTTG+CGG 0.504523 contig627end:-12108 MsG0080049039.01.T01:exon
TGTTCTTACTCCTGATGCTG+TGG 0.512705 contig627end:-11886 MsG0080049039.01.T01:exon
ATCTTAATACTCCAATCCCT+CGG 0.513190 contig627end:+12191 MsG0080049039.01.T01:intergenic
ACACCTCTCCGACCCGGCGG+TGG 0.514026 contig627end:-12233 MsG0080049039.01.T01:exon
CTGTGGATTATTTGAATGGT+AGG 0.517004 contig627end:-11869 MsG0080049039.01.T01:exon
TTCGACTGCGGTGGCGAGTG+CGG 0.517432 contig627end:-12141 MsG0080049039.01.T01:exon
TCTTCAAAATTGATTGGTGT+GGG 0.523444 contig627end:+12712 MsG0080049039.01.T01:intergenic
GTGGACGACGGCGCGTGAGG+TGG 0.527072 contig627end:+12391 MsG0080049039.01.T01:intergenic
GGTGAAGGAGAAAGTGTTGT+TGG 0.529186 contig627end:-11988 MsG0080049039.01.T01:exon
AGCGCGTGTTAGGGTGGAAG+CGG 0.529585 contig627end:+12328 MsG0080049039.01.T01:intergenic
GACTGGAACCCTGACGTGCT+CGG 0.533930 contig627end:+12258 MsG0080049039.01.T01:intergenic
GACTTCAGCGCGTGTTAGGG+TGG 0.541859 contig627end:+12322 MsG0080049039.01.T01:intergenic
GATGATGGCGCGGTGGACGA+CGG 0.542754 contig627end:+12379 MsG0080049039.01.T01:intergenic
AGATTAATAAGAAGGAGAAG+AGG 0.552891 contig627end:-12172 MsG0080049039.01.T01:exon
GGCGCGTGAGGTGGAAGGAG+AGG 0.552944 contig627end:+12400 MsG0080049039.01.T01:intergenic
CCGAAAATCACACCACCGCC+GGG 0.555867 contig627end:+12221 MsG0080049039.01.T01:intergenic
GAAGGAGAGGAGTGGGAGAG+TGG 0.556026 contig627end:+12466 MsG0080049039.01.T01:intergenic
GCGGTGGACGACGGCGCGTG+AGG 0.567418 contig627end:+12388 MsG0080049039.01.T01:intergenic
TATTGCGGCTATGAAACGAT+GGG 0.578180 contig627end:-12051 MsG0080049039.01.T01:exon
ACGACGGCGCGTGAGGTGGA+AGG 0.584809 contig627end:+12395 MsG0080049039.01.T01:intergenic
TGCGGCGGTGAATACGGTTG+TGG 0.587615 contig627end:-12123 MsG0080049039.01.T01:exon
TCATACAAATTCAACGTCCT+CGG 0.595999 contig627end:+11930 MsG0080049039.01.T01:intergenic
AAATCACACCACCGCCGGGT+CGG 0.601550 contig627end:+12225 MsG0080049039.01.T01:intergenic
GACTGCGGTGGCGAGTGCGG+CGG 0.603141 contig627end:-12138 MsG0080049039.01.T01:exon
GGGTCGGAGAGGTGTACGAC+TGG 0.605488 contig627end:+12241 MsG0080049039.01.T01:intergenic
TCGCCGGAGAAGGAGAGGAG+TGG 0.605970 contig627end:+12458 MsG0080049039.01.T01:intergenic
GGCGGTGAATACGGTTGTGG+TGG 0.606327 contig627end:-12120 MsG0080049039.01.T01:exon
TTATTTGAATGGTAGGTATG+GGG 0.606640 contig627end:-11862 MsG0080049039.01.T01:exon
AGTTTGCGGATGAGTTTGAG+GGG 0.607552 contig627end:-12094 MsG0080049039.01.T01:exon
AGTCGTACACCTCTCCGACC+CGG 0.609736 contig627end:-12239 MsG0080049039.01.T01:exon
ACACCACCGCCGGGTCGGAG+AGG 0.612374 contig627end:+12230 MsG0080049039.01.T01:intergenic
GCTTGCTATTTCGACTGCGG+TGG 0.616858 contig627end:-12150 MsG0080049039.01.T01:exon
GATAGTGAACAAGATGATGA+TGG 0.628999 contig627end:-11840 MsG0080049039.01.T01:exon
TTATTGCGGCTATGAAACGA+TGG 0.636194 contig627end:-12052 MsG0080049039.01.T01:exon
ACGATGGGGATTGGATCCGA+CGG 0.638837 contig627end:-12036 MsG0080049039.01.T01:exon
AAAACCGGCCGAGCACGTCA+GGG 0.642897 contig627end:-12266 MsG0080049039.01.T01:exon
GCGTGAGGTGGAAGGAGAGG+CGG 0.646126 contig627end:+12403 MsG0080049039.01.T01:intergenic
ATTGCGGCTATGAAACGATG+GGG 0.665331 contig627end:-12050 MsG0080049039.01.T01:exon
TGAGGGGAATGCGAAGACGA+AGG 0.671267 contig627end:-12078 MsG0080049039.01.T01:exon
GAAGGTCGTGGATGATGGCG+CGG 0.674098 contig627end:+12369 MsG0080049039.01.T01:intergenic
GAGGCTTGCTATTTCGACTG+CGG 0.679087 contig627end:-12153 MsG0080049039.01.T01:exon
CTAACACGCGCTGAAGTCCG+CGG 0.679806 contig627end:-12317 MsG0080049039.01.T01:exon
GGTCGTGGATGATGGCGCGG+TGG 0.680737 contig627end:+12372 MsG0080049039.01.T01:intergenic
GAAGACGAAGGAGTTTATTG+CGG 0.685831 contig627end:-12066 MsG0080049039.01.T01:exon
GACCTTCAAAACAAACGTCG+CGG 0.705449 contig627end:-12353 MsG0080049039.01.T01:exon
ACACGCGCTGAAGTCCGCGG+TGG 0.728787 contig627end:-12314 MsG0080049039.01.T01:exon
CGTACACCTCTCCGACCCGG+CGG 0.776483 contig627end:-12236 MsG0080049039.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATTTAAAAACTTAAACTA+CGG + contig627end:11111-11130 MsG0080049039.01.T01:intergenic 15.0%
!!! AATATAATAATTTTTTGACC+TGG - contig627end:12210-12229 MsG0080049039.01.T01:exon 15.0%
!!! AATTGATTCAAAAAATTACT+AGG + contig627end:12488-12507 MsG0080049039.01.T01:intergenic 15.0%
!! GAGTATTAAGATTAATAAGA+AGG - contig627end:10530-10549 MsG0080049039.01.T01:exon 20.0%
!! TTAGAATGTGAATTTGAATT+TGG + contig627end:10198-10217 MsG0080049039.01.T01:intergenic 20.0%
!! TTATAAGTAGTTCACTTATT+TGG - contig627end:11843-11862 MsG0080049039.01.T01:exon 20.0%
!!! ACTATTTAAAACTCTTATCA+CGG + contig627end:11251-11270 MsG0080049039.01.T01:intergenic 20.0%
!!! ATTTGGAGTGAATTTAATTT+TGG + contig627end:10181-10200 MsG0080049039.01.T01:intergenic 20.0%
!!! GCAACTAAAGTTTTAAATAA+AGG + contig627end:11386-11405 MsG0080049039.01.T01:intergenic 20.0%
!!! GGATAAATTTTTATTGAACA+TGG - contig627end:11453-11472 MsG0080049039.01.T01:intron 20.0%
!!! TTTGGAGTGAATTTAATTTT+GGG + contig627end:10180-10199 MsG0080049039.01.T01:intergenic 20.0%
! ACTTTAGATAAGAGTTAGTT+TGG - contig627end:11432-11451 MsG0080049039.01.T01:intron 25.0%
! ATGGAAAAAAGCAAATACAT+TGG + contig627end:12388-12407 MsG0080049039.01.T01:intergenic 25.0%
! ATTATTTGAATGGTAGGTAT+GGG - contig627end:10847-10866 MsG0080049039.01.T01:exon 25.0%
! CTTAACGATTAAAACTACTT+TGG - contig627end:12705-12724 MsG0080049039.01.T01:exon 25.0%
! GGTAGAAATCAATTCAAATT+TGG - contig627end:11645-11664 MsG0080049039.01.T01:intron 25.0%
! GTTAACATTCTGAATAATGA+AGG - contig627end:11749-11768 MsG0080049039.01.T01:intron 25.0%
! TAAATAATAGCTTCTCGAAT+AGG - contig627end:11490-11509 MsG0080049039.01.T01:intron 25.0%
! TCTGAATCCAAACAAAAAAA+TGG - contig627end:10074-10093 MsG0080049039.01.T01:exon 25.0%
! TTAATTGAAATGTTTCCTTG+AGG - contig627end:11624-11643 MsG0080049039.01.T01:intron 25.0%
!! ATATTTGAAATGTTTCCTTG+AGG - contig627end:11680-11699 MsG0080049039.01.T01:intron 25.0%
!! ATGATTTAAAGTTGTTTGCA+CGG - contig627end:12294-12313 MsG0080049039.01.T01:exon 25.0%
!! TGTATCGTATCATTTTATAG+AGG - contig627end:12318-12337 MsG0080049039.01.T01:exon 25.0%
!!! ATTTGCTTTTAGTTGCTAAA+TGG - contig627end:11718-11737 MsG0080049039.01.T01:intron 25.0%
!!! GAAAGTTACGTTTTTTATGA+TGG - contig627end:10698-10717 MsG0080049039.01.T01:exon 25.0%
!!! GTGATAAGAGTTTTAAATAG+TGG - contig627end:11250-11269 MsG0080049039.01.T01:intron 25.0%
!!! TGCAGATCTTTTAAAATCTT+GGG - contig627end:11403-11422 MsG0080049039.01.T01:intron 25.0%
!!! TTGCAGATCTTTTAAAATCT+TGG - contig627end:11402-11421 MsG0080049039.01.T01:intron 25.0%
!!! TTTTGAGTTGCTTATTATTG+TGG - contig627end:12164-12183 MsG0080049039.01.T01:exon 25.0%
AAAATGAGTCAGTGAGATTT+AGG + contig627end:12054-12073 MsG0080049039.01.T01:intergenic 30.0%
AAAGAAAGAGAAGTTGAAGT+TGG + contig627end:10123-10142 MsG0080049039.01.T01:intergenic 30.0%
AAATCATCAATTCACCACAT+CGG + contig627end:12281-12300 MsG0080049039.01.T01:intergenic 30.0%
AATTAGATGATCATGAGACA+TGG + contig627end:11529-11548 MsG0080049039.01.T01:intergenic 30.0%
AGATTAATAAGAAGGAGAAG+AGG - contig627end:10538-10557 MsG0080049039.01.T01:exon 30.0%
CCTATCTCTTCAAAATTGAT+TGG + contig627end:10007-10026 MsG0080049039.01.T01:intergenic 30.0%
GATTATTTGAATGGTAGGTA+TGG - contig627end:10846-10865 MsG0080049039.01.T01:exon 30.0%
TGTATATTGGACATTCATGT+TGG - contig627end:12102-12121 MsG0080049039.01.T01:exon 30.0%
TTAAATTGAAGTCGCTGTTA+TGG - contig627end:11123-11142 MsG0080049039.01.T01:intron 30.0%
TTATTTGAATGGTAGGTATG+GGG - contig627end:10848-10867 MsG0080049039.01.T01:exon 30.0%
! AAATTTGGTTGATGCAATTG+TGG - contig627end:11182-11201 MsG0080049039.01.T01:intron 30.0%
! TTATTTGGAGTCATCAACTA+TGG - contig627end:11858-11877 MsG0080049039.01.T01:exon 30.0%
! TTGAATTGATTTCTACCTCA+AGG + contig627end:11642-11661 MsG0080049039.01.T01:intergenic 30.0%
! TTGTTGGCTAGTAGAAATAT+TGG - contig627end:10738-10757 MsG0080049039.01.T01:exon 30.0%
!! CCAATCAATTTTGAAGAGAT+AGG - contig627end:10004-10023 MsG0080049039.01.T01:exon 30.0%
!!! AGTGAAGCCATTTTTTTGTT+TGG + contig627end:10084-10103 MsG0080049039.01.T01:intergenic 30.0%
!!! AGTTACGTTTTTTATGATGG+AGG - contig627end:10701-10720 MsG0080049039.01.T01:exon 30.0%
AAAAACGTAACTTTCTCCGT+CGG + contig627end:10693-10712 MsG0080049038.01.T01:intergenic 35.0%
AGATACCAGTTCCAAAGTTA+AGG + contig627end:11965-11984 MsG0080049039.01.T01:intergenic 35.0%
AGCAACTCAAAAGTTACAGA+AGG + contig627end:12156-12175 MsG0080049039.01.T01:intergenic 35.0%
ATACAACTTCTTCAGAAGGA+AGG + contig627end:12593-12612 MsG0080049039.01.T01:intergenic 35.0%
ATAGAGGATATTGCTCATAC+AGG - contig627end:12334-12353 MsG0080049039.01.T01:exon 35.0%
ATCTTAATACTCCAATCCCT+CGG + contig627end:10522-10541 MsG0080049039.01.T01:intergenic 35.0%
ATTGTGGAAGAGCTTAAGAT+GGG - contig627end:12180-12199 MsG0080049039.01.T01:exon 35.0%
CCAAATTCAAGTAGCATGTA+AGG - contig627end:12423-12442 MsG0080049039.01.T01:exon 35.0%
CTTGTACTGCTTCTACTTAA+TGG - contig627end:12628-12647 MsG0080049039.01.T01:exon 35.0%
CTTTGATATGGTGATAACTG+TGG - contig627end:11157-11176 MsG0080049039.01.T01:intron 35.0%
GAAGTAGTAGTTGTAGAAGA+TGG - contig627end:10906-10925 MsG0080049039.01.T01:exon 35.0%
GATAGTGAACAAGATGATGA+TGG - contig627end:10870-10889 MsG0080049039.01.T01:exon 35.0%
GCTTTCTTCTATTTGGATAC+AGG - contig627end:12235-12254 MsG0080049039.01.T01:exon 35.0%
GTGATAACTGTGGTCAAATT+TGG - contig627end:11167-11186 MsG0080049039.01.T01:intron 35.0%
GTTGTGGAGACATACAAATA+CGG - contig627end:11204-11223 MsG0080049039.01.T01:intron 35.0%
TAGAGGATATTGCTCATACA+GGG - contig627end:12335-12354 MsG0080049039.01.T01:exon 35.0%
TATTGTGGAAGAGCTTAAGA+TGG - contig627end:12179-12198 MsG0080049039.01.T01:exon 35.0%
TCATACAAATTCAACGTCCT+CGG + contig627end:10783-10802 MsG0080049039.01.T01:intergenic 35.0%
TGAATTTGGATTCTAAGCGA+TGG + contig627end:12412-12431 MsG0080049039.01.T01:intergenic 35.0%
TTATAAAGCTGCCCAAATCT+CGG - contig627end:11353-11372 MsG0080049039.01.T01:intron 35.0%
TTCAAATAATCCACAGCATC+AGG + contig627end:10837-10856 MsG0080049039.01.T01:intergenic 35.0%
TTGTGCATGTGTGTGTATAT+TGG - contig627end:12089-12108 MsG0080049039.01.T01:exon 35.0%
TTTGTGCAGATGCATGTAAA+TGG - contig627end:12527-12546 MsG0080049039.01.T01:exon 35.0%
! AGATTTGGGCAGCTTTATAA+TGG + contig627end:11353-11372 MsG0080049039.01.T01:intergenic 35.0%
! CCTTACATGCTACTTGAATT+TGG + contig627end:12426-12445 MsG0080049039.01.T01:intergenic 35.0%
! CTGTGGATTATTTGAATGGT+AGG - contig627end:10841-10860 MsG0080049039.01.T01:exon 35.0%
! GATGCTGTGGATTATTTGAA+TGG - contig627end:10837-10856 MsG0080049039.01.T01:exon 35.0%
!! TCTTTTGGTTGTAGGGTTTT+CGG + contig627end:10425-10444 MsG0080049039.01.T01:intergenic 35.0%
!! TGTGTAGTCTTATTTGTCAC+TGG - contig627end:11933-11952 MsG0080049039.01.T01:exon 35.0%
!! TTTAGCCTTAACTTTGGAAC+TGG - contig627end:11957-11976 MsG0080049039.01.T01:exon 35.0%
!!! GTTTTTTATGATGGAGGTGA+AGG - contig627end:10707-10726 MsG0080049039.01.T01:exon 35.0%
ACACGCTACTATAATGCTTC+AGG + contig627end:11568-11587 MsG0080049039.01.T01:intergenic 40.0%
CCAAATAGAAGAAAGCAACC+AGG + contig627end:12231-12250 MsG0080049039.01.T01:intergenic 40.0%
CCACATCATACGCAATATCA+AGG + contig627end:11289-11308 MsG0080049039.01.T01:intergenic 40.0%
CCAGATACAACTTCTTCAGA+AGG + contig627end:12597-12616 MsG0080049039.01.T01:intergenic 40.0%
CCCTACAACCAAAAGAAAAC+CGG - contig627end:10429-10448 MsG0080049039.01.T01:exon 40.0%
CCTTGATATTGCGTATGATG+TGG - contig627end:11286-11305 MsG0080049039.01.T01:intron 40.0%
GAAGACGAAGGAGTTTATTG+CGG - contig627end:10644-10663 MsG0080049039.01.T01:exon 40.0%
GGATGTTGTGATCACAAATG+TGG - contig627end:11225-11244 MsG0080049039.01.T01:intron 40.0%
GTCAGTGCGAATGTACTATT+GGG - contig627end:11073-11092 MsG0080049039.01.T01:intron 40.0%
GTTGCGTGCAATCTTTGATA+TGG - contig627end:11145-11164 MsG0080049039.01.T01:intron 40.0%
GTTGTAGAAGATGGTGAAGA+AGG - contig627end:10915-10934 MsG0080049039.01.T01:exon 40.0%
TATTGCGGCTATGAAACGAT+GGG - contig627end:10659-10678 MsG0080049039.01.T01:exon 40.0%
TGTCAGTGCGAATGTACTAT+TGG - contig627end:11072-11091 MsG0080049039.01.T01:intron 40.0%
TTATTGCGGCTATGAAACGA+TGG - contig627end:10658-10677 MsG0080049039.01.T01:exon 40.0%
TTGCTCATACAGGGTATAGA+AGG - contig627end:12344-12363 MsG0080049039.01.T01:exon 40.0%
TTGGATTCTAAGCGATGGAA+TGG + contig627end:12407-12426 MsG0080049039.01.T01:intergenic 40.0%
! CCTGGTTGCTTTCTTCTATT+TGG - contig627end:12228-12247 MsG0080049039.01.T01:exon 40.0%
! CCTTCTGAAGAAGTTGTATC+TGG - contig627end:12594-12613 MsG0080049039.01.T01:exon 40.0%
!! ACTGGCTTTAGCCTTAACTT+TGG - contig627end:11951-11970 MsG0080049039.01.T01:exon 40.0%
!! CCGGTTTTCTTTTGGTTGTA+GGG + contig627end:10432-10451 MsG0080049039.01.T01:intergenic 40.0%
!! GGACATTCATGTTGGTAGTT+GGG - contig627end:12110-12129 MsG0080049039.01.T01:exon 40.0%
!! TGGACATTCATGTTGGTAGT+TGG - contig627end:12109-12128 MsG0080049039.01.T01:exon 40.0%
AAAGGTCTGCAACCGAGATT+TGG + contig627end:11368-11387 MsG0080049039.01.T01:intergenic 45.0%
AAGGTCTGCAACCGAGATTT+GGG + contig627end:11367-11386 MsG0080049039.01.T01:intergenic 45.0%
AGTGGCGAGTTTGCAAGAAA+TGG + contig627end:10229-10248 MsG0080049039.01.T01:intergenic 45.0%
AGTTTGCGGATGAGTTTGAG+GGG - contig627end:10616-10635 MsG0080049039.01.T01:exon 45.0%
ATACTCCAATCCCTCGGTTT+AGG + contig627end:10516-10535 MsG0080049039.01.T01:intergenic 45.0%
ATTGCGGCTATGAAACGATG+GGG - contig627end:10660-10679 MsG0080049039.01.T01:exon 45.0%
GACCTTCAAAACAAACGTCG+CGG - contig627end:10357-10376 MsG0080049039.01.T01:exon 45.0%
GAGTTTGCGGATGAGTTTGA+GGG - contig627end:10615-10634 MsG0080049039.01.T01:exon 45.0%
TACTCCAATCCCTCGGTTTA+GGG + contig627end:10515-10534 MsG0080049039.01.T01:intergenic 45.0%
TATTGACACGTGTCAGACAC+CGG - contig627end:11037-11056 MsG0080049039.01.T01:intron 45.0%
TGTTCTTACTCCTGATGCTG+TGG - contig627end:10824-10843 MsG0080049039.01.T01:exon 45.0%
! GGTTGATGCAATTGTGGTTG+TGG - contig627end:11188-11207 MsG0080049039.01.T01:intron 45.0%
! TACATTCGCACTGACACGAA+AGG + contig627end:11068-11087 MsG0080049039.01.T01:intergenic 45.0%
!! GCCGGTTTTCTTTTGGTTGT+AGG + contig627end:10433-10452 MsG0080049039.01.T01:intergenic 45.0%
!! GGTGAAGGAGAAAGTGTTGT+TGG - contig627end:10722-10741 MsG0080049039.01.T01:exon 45.0%
!!! GACGTTTGTTTTGAAGGTCG+TGG + contig627end:10356-10375 MsG0080049039.01.T01:intergenic 45.0%
!!! GTTTTGAAGGTCGTGGATGA+TGG + contig627end:10349-10368 MsG0080049039.01.T01:intergenic 45.0%
!!! TGATTCACCGATTTTCTCGC+CGG + contig627end:10271-10290 MsG0080049039.01.T01:intergenic 45.0%
GGAGTTTGCGGATGAGTTTG+AGG - contig627end:10614-10633 MsG0080049039.01.T01:exon 50.0%
GGCTATGAAACGATGGGGAT+TGG - contig627end:10665-10684 MsG0080049039.01.T01:exon 50.0%
TCCTTCTCCGGCGAGAAAAT+CGG - contig627end:10261-10280 MsG0080049039.01.T01:exon 50.0%
! ACTGACACGAAAGGCATGTC+CGG + contig627end:11059-11078 MsG0080049039.01.T01:intergenic 50.0%
! GATTTTCGGCCCTAAACCGA+GGG - contig627end:10503-10522 MsG0080049039.01.T01:exon 50.0%
! TGATTTTCGGCCCTAAACCG+AGG - contig627end:10502-10521 MsG0080049039.01.T01:exon 50.0%
!! CGTTGAAGATTTTGACGCCG+AGG - contig627end:10763-10782 MsG0080049039.01.T01:exon 50.0%
!! GAGGCTTGCTATTTCGACTG+CGG - contig627end:10557-10576 MsG0080049039.01.T01:exon 50.0%
!!! TGCCGCGACGTTTGTTTTGA+AGG + contig627end:10362-10381 MsG0080049039.01.T01:intergenic 50.0%
ACGATGGGGATTGGATCCGA+CGG - contig627end:10674-10693 MsG0080049039.01.T01:exon 55.0%
GGTGAATACGGTTGTGGTGG+AGG - contig627end:10593-10612 MsG0080049039.01.T01:exon 55.0%
TCGGCACTTTCTTCTGCGTC+TGG + contig627end:12262-12281 MsG0080049039.01.T01:intergenic 55.0%
TGAGGGGAATGCGAAGACGA+AGG - contig627end:10632-10651 MsG0080049039.01.T01:exon 55.0%
! GGTTGTGGTGGAGGAGTTTG+CGG - contig627end:10602-10621 MsG0080049039.01.T01:exon 55.0%
! TTTTCTCGCCGGAGAAGGAG+AGG + contig627end:10260-10279 MsG0080049039.01.T01:intergenic 55.0%
!! ACCGATTTTCTCGCCGGAGA+AGG + contig627end:10265-10284 MsG0080049039.01.T01:intergenic 55.0%
!! CGCAGAAGAAAGTGCCGATG+TGG - contig627end:12264-12283 MsG0080049039.01.T01:exon 55.0%
!! GCTTGCTATTTCGACTGCGG+TGG - contig627end:10560-10579 MsG0080049039.01.T01:exon 55.0%
!! GTGCTCGGCCGGTTTTCTTT+TGG + contig627end:10440-10459 MsG0080049039.01.T01:intergenic 55.0%
AAAACCGGCCGAGCACGTCA+GGG - contig627end:10444-10463 MsG0080049039.01.T01:exon 60.0%
AAATCACACCACCGCCGGGT+CGG + contig627end:10488-10507 MsG0080049039.01.T01:intergenic 60.0%
AGCGCGTGTTAGGGTGGAAG+CGG + contig627end:10385-10404 MsG0080049039.01.T01:intergenic 60.0%
AGTCGTACACCTCTCCGACC+CGG - contig627end:10471-10490 MsG0080049039.01.T01:exon 60.0%
CCGAAAATCACACCACCGCC+GGG + contig627end:10492-10511 MsG0080049039.01.T01:intergenic 60.0%
CTAACACGCGCTGAAGTCCG+CGG - contig627end:10393-10412 MsG0080049039.01.T01:exon 60.0%
CTCCCACTCCTCTCCTTCTC+CGG - contig627end:10249-10268 MsG0080049039.01.T01:exon 60.0%
GAAGGAGAGGAGTGGGAGAG+TGG + contig627end:10247-10266 MsG0080049039.01.T01:intergenic 60.0%
GACTGGAACCCTGACGTGCT+CGG + contig627end:10455-10474 MsG0080049039.01.T01:intergenic 60.0%
GACTTCAGCGCGTGTTAGGG+TGG + contig627end:10391-10410 MsG0080049039.01.T01:intergenic 60.0%
GCCGAAAATCACACCACCGC+CGG + contig627end:10493-10512 MsG0080049039.01.T01:intergenic 60.0%
GCGGACTTCAGCGCGTGTTA+GGG + contig627end:10394-10413 MsG0080049039.01.T01:intergenic 60.0%
GGCGGTGAATACGGTTGTGG+TGG - contig627end:10590-10609 MsG0080049039.01.T01:exon 60.0%
TCGGCCCTAAACCGAGGGAT+TGG - contig627end:10508-10527 MsG0080049039.01.T01:exon 60.0%
TGCGGCGGTGAATACGGTTG+TGG - contig627end:10587-10606 MsG0080049039.01.T01:exon 60.0%
! CCCGGCGGTGGTGTGATTTT+CGG - contig627end:10489-10508 MsG0080049039.01.T01:exon 60.0%
! GAAGGTCGTGGATGATGGCG+CGG + contig627end:10344-10363 MsG0080049039.01.T01:intergenic 60.0%
CGCCGGAGAAGGAGAGGAGT+GGG + contig627end:10254-10273 MsG0080049039.01.T01:intergenic 65.0%
CGCGGACTTCAGCGCGTGTT+AGG + contig627end:10395-10414 MsG0080049039.01.T01:intergenic 65.0%
GAAAACCGGCCGAGCACGTC+AGG - contig627end:10443-10462 MsG0080049039.01.T01:exon 65.0%
GCGTGAGGTGGAAGGAGAGG+CGG + contig627end:10310-10329 MsG0080049039.01.T01:intergenic 65.0%
GGCGAGTGCGGCGGTGAATA+CGG - contig627end:10581-10600 MsG0080049039.01.T01:exon 65.0%
TCGCCGGAGAAGGAGAGGAG+TGG + contig627end:10255-10274 MsG0080049039.01.T01:intergenic 65.0%
TTCGACTGCGGTGGCGAGTG+CGG - contig627end:10569-10588 MsG0080049039.01.T01:exon 65.0%
! AGGGTTTTCGGCCACCACCG+CGG + contig627end:10413-10432 MsG0080049039.01.T01:intergenic 65.0%
! GATGATGGCGCGGTGGACGA+CGG + contig627end:10334-10353 MsG0080049039.01.T01:intergenic 65.0%
! GGGTCGGAGAGGTGTACGAC+TGG + contig627end:10472-10491 MsG0080049039.01.T01:intergenic 65.0%
ACACGCGCTGAAGTCCGCGG+TGG - contig627end:10396-10415 MsG0080049039.01.T01:exon 70.0%
ACGACGGCGCGTGAGGTGGA+AGG + contig627end:10318-10337 MsG0080049039.01.T01:intergenic 70.0%
CGTACACCTCTCCGACCCGG+CGG - contig627end:10474-10493 MsG0080049039.01.T01:exon 70.0%
GGAACCCTGACGTGCTCGGC+CGG + contig627end:10451-10470 MsG0080049039.01.T01:intergenic 70.0%
GGCGCGTGAGGTGGAAGGAG+AGG + contig627end:10313-10332 MsG0080049039.01.T01:intergenic 70.0%
! GGTCGTGGATGATGGCGCGG+TGG + contig627end:10341-10360 MsG0080049039.01.T01:intergenic 70.0%
ACACCACCGCCGGGTCGGAG+AGG + contig627end:10483-10502 MsG0080049039.01.T01:intergenic 75.0%
ACACCTCTCCGACCCGGCGG+TGG - contig627end:10477-10496 MsG0080049039.01.T01:exon 75.0%
CGCGCTGAAGTCCGCGGTGG+TGG - contig627end:10399-10418 MsG0080049039.01.T01:exon 75.0%
GACTGCGGTGGCGAGTGCGG+CGG - contig627end:10572-10591 MsG0080049039.01.T01:exon 75.0%
GTGGACGACGGCGCGTGAGG+TGG + contig627end:10322-10341 MsG0080049039.01.T01:intergenic 75.0%
! GCGGTGGACGACGGCGCGTG+AGG + contig627end:10325-10344 MsG0080049039.01.T01:intergenic 80.0%
Chromosome Type Strat End Strand Name
contig627end gene 10001 12731 10001 ID=MsG0080049039.01;
contig627end mRNA 10001 12731 10001 ID=MsG0080049039.01.T01;Parent=MsG0080049039.01
contig627end exon 10001 11026 10001 ID=MsG0080049039.01.T01.exon;Parent=MsG0080049039.01.T01
contig627end CDS 10971 11026 10971 ID=MsG0080049039.01.T01.cds;Parent=MsG0080049039.01.T01
contig627end CDS 11796 12639 11796 ID=MsG0080049039.01.T01.cds;Parent=MsG0080049039.01.T01
contig627end exon 11796 12731 11796 ID=MsG0080049039.01.T01.exon;Parent=MsG0080049039.01.T01
Gene Sequence

>MsG0080049039.01.T01

ATGGCTTCACTCTCTTCAACACTAACACCAACTTCAACTTCTCTTTCTTTCTTCTCTTCTTCAATTTTCATCTCAAATTCAATTCCCAAAATTAAATTCACTCCAAATTCAAATTCACATTCTAATTCACTTTCCATTTCTTGCAAACTCGCCACTCTCCCACTCCTCTCCTTCTCCGGCGAGAAAATCGGTGAATCAACTCTCGACGTCAAATCCGCCTCTCCTTCCACCTCACGCGCCGTCGTCCACCGCGCCATCATCCACGACCTTCAAAACAAACGTCGCGGCACCGCTTCCACCCTAACACGCGCTGAAGTCCGCGGTGGTGGCCGAAAACCCTACAACCAAAAGAAAACCGGCCGAGCACGTCAGGGTTCCAGTCGTACACCTCTCCGACCCGGCGGTGGTGTGATTTTCGGCCCTAAACCGAGGGATTGGAGTATTAAGATTAATAAGAAGGAGAAGAGGCTTGCTATTTCGACTGCGGTGGCGAGTGCGGCGGTGAATACGGTTGTGGTGGAGGAGTTTGCGGATGAGTTTGAGGGGAATGCGAAGACGAAGGAGTTTATTGCGGCTATGAAACGATGGGGATTGGATCCGACGGAGAAAGTTACGTTTTTTATGATGGAGGTGAAGGAGAAAGTGTTGTTGGCTAGTAGAAATATTGGAACGTTGAAGATTTTGACGCCGAGGACGTTGAATTTGTATGATGTTTTGAATGCTGATAAGATTGTTCTTACTCCTGATGCTGTGGATTATTTGAATGGTAGGTATGGGGATAGTGAACAAGATGATGATGGTGATTATGATGAAGAAGTAGTAGTTGTAGAAGATGGTGAAGAAGAAATCAATTCAAATTTGCTTTTAGTTGCTAAATGGATTCTCAAGTTAACATTCTGA

Protein sequence

>MsG0080049039.01.T01

MASLSSTLTPTSTSLSFFSSSIFISNSIPKIKFTPNSNSHSNSLSISCKLATLPLLSFSGEKIGESTLDVKSASPSTSRAVVHRAIIHDLQNKRRGTASTLTRAEVRGGGRKPYNQKKTGRARQGSSRTPLRPGGGVIFGPKPRDWSIKINKKEKRLAISTAVASAAVNTVVVEEFADEFEGNAKTKEFIAAMKRWGLDPTEKVTFFMMEVKEKVLLASRNIGTLKILTPRTLNLYDVLNADKIVLTPDAVDYLNGRYGDSEQDDDGDYDEEVVVVEDGEEEINSNLLLVAKWILKLTF*