AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036075.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036075.01.T01 MTR_7g007280 92.126 127 2 2 39 165 121 239 2.73e-77 230
MsG0780036075.01.T01 MTR_6g025680 76.378 127 22 2 39 165 122 240 2.93e-66 202
MsG0780036075.01.T01 MTR_6g018550 76.378 127 22 2 39 165 118 236 3.63e-66 202
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036075.01.T01 AT1G67080 64.754 122 35 2 39 160 107 220 3.59e-53 168
MsG0780036075.01.T01 AT1G67080 62.791 43 15 1 39 81 107 148 2.79e-12 61.6

Find 32 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATTTGCTGTGCCTTTCT+TGG 0.147302 7:+2109679 MsG0780036075.01.T01:CDS
CTCTGCTTGGATTCACCTTT+TGG 0.175390 7:+2109892 MsG0780036075.01.T01:CDS
AAAATCAATCGAACTGTTTC+AGG 0.185668 7:-2109705 None:intergenic
AAGGGTTGTACCTTATTAAA+TGG 0.248376 7:-2107498 None:intergenic
TTCACCATTACCATTTAATA+AGG 0.254760 7:+2107488 MsG0780036075.01.T01:CDS
ATGAATATGAAGCTGAAATT+TGG 0.275042 7:-2107372 None:intergenic
AAACTACTTTCCATAGACTT+TGG 0.438768 7:-2109624 None:intergenic
AATTATTATGAATATGTGTT+CGG 0.449691 7:+2107244 MsG0780036075.01.T01:five_prime_UTR
AGTTGACTTTAGCCTCTGCT+TGG 0.453787 7:+2109879 MsG0780036075.01.T01:CDS
TGTACCTTATTAAATGGTAA+TGG 0.465204 7:-2107492 None:intergenic
ACATGAGTAAGAATCCCAAT+TGG 0.470965 7:-2110522 None:intergenic
AAAGTAGTTTACCATATGTA+GGG 0.485337 7:+2109637 MsG0780036075.01.T01:CDS
ATGCCGAGCACCCCTACATA+TGG 0.485875 7:-2109648 None:intergenic
ACCAAAACTACAAGAAAAGA+TGG 0.507075 7:+2110561 MsG0780036075.01.T01:CDS
CTGTTTCAGGTGTCCAAGAA+AGG 0.512995 7:-2109692 None:intergenic
GAAAGTAGTTTACCATATGT+AGG 0.513572 7:+2109636 MsG0780036075.01.T01:CDS
TGGGCAAAAGAACAAGCAAA+AGG 0.529473 7:-2110502 None:intergenic
TTACCATATGTAGGGGTGCT+CGG 0.529875 7:+2109645 MsG0780036075.01.T01:CDS
CATGAGTAAGAATCCCAATT+GGG 0.537813 7:-2110521 None:intergenic
TTCAGAAAAGACAAAACAAG+TGG 0.545805 7:+2107287 MsG0780036075.01.T01:five_prime_UTR
TCCATCATGAAATATATGCC+TGG 0.547552 7:-2110445 None:intergenic
TCCTTGCAGCTTTCTAGCAT+AGG 0.568671 7:+2109839 MsG0780036075.01.T01:intron
TATTCATATATATGAAGAAG+TGG 0.572941 7:+2107388 MsG0780036075.01.T01:five_prime_UTR
TCCAGGCATATATTTCATGA+TGG 0.581090 7:+2110444 MsG0780036075.01.T01:CDS
AAGACAAAACAAGTGGAAAG+TGG 0.585869 7:+2107294 MsG0780036075.01.T01:five_prime_UTR
AACAACAGATTCAGCAACAA+TGG 0.604765 7:-2107411 None:intergenic
ATTTGATGTTAGGTGCATGT+TGG 0.611460 7:+2107758 MsG0780036075.01.T01:intron
ACTACAAGAAAAGATGGTCA+TGG 0.623185 7:+2110567 MsG0780036075.01.T01:CDS
CAAAAGGTGAATCCAAGCAG+AGG 0.662634 7:-2109891 None:intergenic
AAGTAGTTTACCATATGTAG+GGG 0.665958 7:+2109638 MsG0780036075.01.T01:CDS
TGAAGAATCAGATTGAAACT+CGG 0.677130 7:+2110469 MsG0780036075.01.T01:CDS
GAGTAAATACTTACTACCTG+AGG 0.719897 7:+2109731 MsG0780036075.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTGATTTATAATCATTT+GGG + Chr7:2108308-2108327 MsG0780036075.01.T01:intron 10.0%
!!! TAATTTTAGAAAAATTAATC+AGG - Chr7:2109594-2109613 None:intergenic 10.0%
!!! TATATTTATCTTATCTTTTT+TGG + Chr7:2108717-2108736 MsG0780036075.01.T01:intron 10.0%
!! AACAAACAATAAAATAAAGT+TGG - Chr7:2108956-2108975 None:intergenic 15.0%
!! AATATAATTAGGATGATTAA+TGG - Chr7:2110218-2110237 None:intergenic 15.0%
!! AATTATTATGAATATGTGTT+CGG + Chr7:2107244-2107263 MsG0780036075.01.T01:five_prime_UTR 15.0%
!! GTTTAAAAAAAACAAACAAT+AGG + Chr7:2108062-2108081 MsG0780036075.01.T01:intron 15.0%
!!! ACAATTCATATTCATTTTTT+AGG + Chr7:2109505-2109524 MsG0780036075.01.T01:intron 15.0%
!!! CATATTGATTTATAATCATT+TGG + Chr7:2108307-2108326 MsG0780036075.01.T01:intron 15.0%
!!! CTTTTTTTGATTTTACAAAA+GGG + Chr7:2107572-2107591 MsG0780036075.01.T01:intron 15.0%
!!! TACTTTTTACTTTTTTCTTA+AGG - Chr7:2107216-2107235 None:intergenic 15.0%
!!! TATTGATTTATAATCATTTG+GGG + Chr7:2108309-2108328 MsG0780036075.01.T01:intron 15.0%
!!! TTTTTTTGATTTTACAAAAG+GGG + Chr7:2107573-2107592 MsG0780036075.01.T01:intron 15.0%
!! AACCAAATAAATGAAATGAA+AGG - Chr7:2109558-2109577 None:intergenic 20.0%
!! AATTTACCATTCAATAGAAT+TGG + Chr7:2108604-2108623 MsG0780036075.01.T01:intron 20.0%
!! ACAAAAGAATAACAGAAAAT+AGG - Chr7:2109174-2109193 None:intergenic 20.0%
!! ACATGAATAATTGTAGAAAA+GGG - Chr7:2109124-2109143 None:intergenic 20.0%
!! AGTTTATTTATTCGTATGTA+TGG + Chr7:2108239-2108258 MsG0780036075.01.T01:intron 20.0%
!! TAATTATATTCATGATCTTC+AGG + Chr7:2110228-2110247 MsG0780036075.01.T01:intron 20.0%
!! TACAAAACAAAACAATGAAA+GGG - Chr7:2107519-2107538 None:intergenic 20.0%
!! TATTCATATATATGAAGAAG+TGG + Chr7:2107388-2107407 MsG0780036075.01.T01:five_prime_UTR 20.0%
!! TGAAAAAGTAGCATTAAAAA+AGG - Chr7:2108547-2108566 None:intergenic 20.0%
!! TGAAGATCATGAATATAATT+AGG - Chr7:2110229-2110248 None:intergenic 20.0%
!! TTACAAAACAAAACAATGAA+AGG - Chr7:2107520-2107539 None:intergenic 20.0%
!! TTCCTTTCATTTCATTTATT+TGG + Chr7:2109553-2109572 MsG0780036075.01.T01:intron 20.0%
!! TTTAGATGTTCAAATATACA+TGG + Chr7:2110189-2110208 MsG0780036075.01.T01:intron 20.0%
!! TTTGTAATAGATTTGATGTT+AGG + Chr7:2107748-2107767 MsG0780036075.01.T01:intron 20.0%
!!! AAACTATCTTAAAGCATTTA+AGG - Chr7:2108900-2108919 None:intergenic 20.0%
!!! ATTTATCTTATCTTTTTTGG+CGG + Chr7:2108720-2108739 MsG0780036075.01.T01:intron 20.0%
!!! CCTTTTGTAAAATCAAAAAA+AGG - Chr7:2107574-2107593 None:intergenic 20.0%
!!! CCTTTTTTTGATTTTACAAA+AGG + Chr7:2107571-2107590 MsG0780036075.01.T01:intron 20.0%
!!! TTTTTCATGTAATCTAGAAT+TGG + Chr7:2108560-2108579 MsG0780036075.01.T01:intron 20.0%
! AAAAATTAGACCAAAGTCTA+TGG + Chr7:2109614-2109633 MsG0780036075.01.T01:intron 25.0%
! AAAGTAGTTTACCATATGTA+GGG + Chr7:2109637-2109656 MsG0780036075.01.T01:CDS 25.0%
! AATTGCTTGTTCTGTATAAA+TGG + Chr7:2109299-2109318 MsG0780036075.01.T01:intron 25.0%
! ACAAAAAATCGAGAACAATT+TGG + Chr7:2110032-2110051 MsG0780036075.01.T01:intron 25.0%
! ACAATCTTCAATTTAAGTGT+CGG - Chr7:2108142-2108161 None:intergenic 25.0%
! ATGAATATGAAGCTGAAATT+TGG - Chr7:2107375-2107394 None:intergenic 25.0%
! CACATGAATAATTGTAGAAA+AGG - Chr7:2109125-2109144 None:intergenic 25.0%
! CATAAAGTAGGTTACTATTA+GGG + Chr7:2108749-2108768 MsG0780036075.01.T01:intron 25.0%
! CATCATTACTAATGTGAAAT+GGG + Chr7:2107690-2107709 MsG0780036075.01.T01:intron 25.0%
! GAGAAAAAGTTAGCTAAAAT+TGG - Chr7:2107343-2107362 None:intergenic 25.0%
! GAGTTTGTATTTCAAAAAGT+TGG + Chr7:2108084-2108103 MsG0780036075.01.T01:intron 25.0%
! TAACAATCTATTCGATTCAA+TGG - Chr7:2109242-2109261 None:intergenic 25.0%
! TAACACAGATTAACAGATTA+TGG - Chr7:2110282-2110301 None:intergenic 25.0%
! TCATAAAGTAGGTTACTATT+AGG + Chr7:2108748-2108767 MsG0780036075.01.T01:intron 25.0%
! TGATATGTTAAAATGCATGT+TGG + Chr7:2107914-2107933 MsG0780036075.01.T01:intron 25.0%
! TGTACCTTATTAAATGGTAA+TGG - Chr7:2107495-2107514 None:intergenic 25.0%
! TTCACCATTACCATTTAATA+AGG + Chr7:2107488-2107507 MsG0780036075.01.T01:CDS 25.0%
! TTGAACATCTAAAAACCATT+TGG - Chr7:2110182-2110201 None:intergenic 25.0%
! TTGGATAATTAATGTCGTTA+AGG + Chr7:2110051-2110070 MsG0780036075.01.T01:intron 25.0%
!! AAGGAGTATGCAAATATAAA+CGG - Chr7:2109824-2109843 None:intergenic 25.0%
!! CTTTTCTACAATTATTCATG+TGG + Chr7:2109123-2109142 MsG0780036075.01.T01:intron 25.0%
!! TATTTCTCTGACAGTATTTT+TGG + Chr7:2110414-2110433 MsG0780036075.01.T01:intron 25.0%
!!! CTGCATTTTTTTGTCTTTTT+TGG + Chr7:2107546-2107565 MsG0780036075.01.T01:intron 25.0%
!!! GCTCTATTCTTTTAAGTTTT+TGG + Chr7:2109056-2109075 MsG0780036075.01.T01:intron 25.0%
!!! GTTTTTTTTAAACAACCTAG+CGG - Chr7:2108055-2108074 None:intergenic 25.0%
!!! TGAGCATAATGGATATATTT+AGG + Chr7:2108640-2108659 MsG0780036075.01.T01:intron 25.0%
!!! TTTTGGTTTTACAACAATTC+TGG - Chr7:2108470-2108489 None:intergenic 25.0%
AAAACCAAAAGCTACAAGAT+CGG + Chr7:2108480-2108499 MsG0780036075.01.T01:intron 30.0%
AAAATCAATCGAACTGTTTC+AGG - Chr7:2109708-2109727 None:intergenic 30.0%
AAACTACTTTCCATAGACTT+TGG - Chr7:2109627-2109646 None:intergenic 30.0%
AAACTATACACATGATATCG+TGG + Chr7:2110301-2110320 MsG0780036075.01.T01:intron 30.0%
AAGGGTTGTACCTTATTAAA+TGG - Chr7:2107501-2107520 None:intergenic 30.0%
AAGTAGTTTACCATATGTAG+GGG + Chr7:2109638-2109657 MsG0780036075.01.T01:CDS 30.0%
AATGCAATTAACCCTGAATT+TGG + Chr7:2110146-2110165 MsG0780036075.01.T01:intron 30.0%
ACCAAAACTACAAGAAAAGA+TGG + Chr7:2110561-2110580 MsG0780036075.01.T01:CDS 30.0%
ATTAATGACATTCAAAACCG+TGG + Chr7:2110335-2110354 MsG0780036075.01.T01:intron 30.0%
CAAAAAGATCAACAACCAAA+AGG - Chr7:2109910-2109929 None:intergenic 30.0%
CAAAAATTGTTGGATCTGTA+AGG + Chr7:2108671-2108690 MsG0780036075.01.T01:intron 30.0%
GAAAGTAGTTTACCATATGT+AGG + Chr7:2109636-2109655 MsG0780036075.01.T01:CDS 30.0%
GAAATCACAAAAGATACAAC+AGG - Chr7:2109942-2109961 None:intergenic 30.0%
GCATCATTACTAATGTGAAA+TGG + Chr7:2107689-2107708 MsG0780036075.01.T01:intron 30.0%
TCACATTAGTAATGATGCAT+TGG - Chr7:2107687-2107706 None:intergenic 30.0%
TGAAGAATCAGATTGAAACT+CGG + Chr7:2110469-2110488 MsG0780036075.01.T01:CDS 30.0%
TGCAGAAATTTGATATGTTG+TGG + Chr7:2107975-2107994 MsG0780036075.01.T01:intron 30.0%
TGCTAAGAAGTTGAAAATGA+GGG - Chr7:2108013-2108032 None:intergenic 30.0%
TTCAGAAAAGACAAAACAAG+TGG + Chr7:2107287-2107306 MsG0780036075.01.T01:five_prime_UTR 30.0%
! AAGTGATGCTTTTCAATCAA+TGG - Chr7:2107320-2107339 None:intergenic 30.0%
! ACCATCTTTTCTTGTAGTTT+TGG - Chr7:2110565-2110584 None:intergenic 30.0%
! ATTAATGTCGTTAAGGTATC+TGG + Chr7:2110058-2110077 MsG0780036075.01.T01:intron 30.0%
! ATTTTCAACTTCTTAGCACT+TGG + Chr7:2108015-2108034 MsG0780036075.01.T01:intron 30.0%
! GGTTCTTTTGCAAAAATTGT+TGG + Chr7:2108661-2108680 MsG0780036075.01.T01:intron 30.0%
! TGAATTTTCCTTTCTCTATC+AGG + Chr7:2108372-2108391 MsG0780036075.01.T01:intron 30.0%
!! AAGTTTTTGGAGACAAGTTA+TGG + Chr7:2109069-2109088 MsG0780036075.01.T01:intron 30.0%
!! GCATGTATTTGACTTCTTTT+TGG - Chr7:2108514-2108533 None:intergenic 30.0%
!! GTATTTGACTTCTTTTTGGA+TGG - Chr7:2108510-2108529 None:intergenic 30.0%
!!! GTATTTTTGGTTCAAAATCC+AGG + Chr7:2110427-2110446 MsG0780036075.01.T01:intron 30.0%
AACAACAGATTCAGCAACAA+TGG - Chr7:2107414-2107433 None:intergenic 35.0%
AAGACAAAACAAGTGGAAAG+TGG + Chr7:2107294-2107313 MsG0780036075.01.T01:five_prime_UTR 35.0%
AAGGAAAATTCAGCTTCAGT+TGG - Chr7:2108364-2108383 None:intergenic 35.0%
AAGTCTCAAACAGTCTTACT+AGG - Chr7:2108818-2108837 None:intergenic 35.0%
AATTTGATATGTTGTGGCGT+CGG + Chr7:2107981-2108000 MsG0780036075.01.T01:intron 35.0%
ACATGAGTAAGAATCCCAAT+TGG - Chr7:2110525-2110544 None:intergenic 35.0%
ACTACAAGAAAAGATGGTCA+TGG + Chr7:2110567-2110586 MsG0780036075.01.T01:CDS 35.0%
AGATTCAGTTTAGTGGAGAT+TGG + Chr7:2108428-2108447 MsG0780036075.01.T01:intron 35.0%
AGCCTTGAACAAACACATTT+AGG + Chr7:2109210-2109229 MsG0780036075.01.T01:intron 35.0%
AGTGCTTCATAGGCAATAAA+AGG + Chr7:2107836-2107855 MsG0780036075.01.T01:intron 35.0%
ATAAAACTCTGTAGGACAGT+TGG + Chr7:2108338-2108357 MsG0780036075.01.T01:intron 35.0%
ATCTGGTTGATCGTATTAAG+TGG + Chr7:2110075-2110094 MsG0780036075.01.T01:intron 35.0%
ATGAAAAACCAGCAATAACG+AGG - Chr7:2109981-2110000 None:intergenic 35.0%
ATTGTTTACCTCAATGTTGC+AGG + Chr7:2109331-2109350 MsG0780036075.01.T01:intron 35.0%
ATTTGATGTTAGGTGCATGT+TGG + Chr7:2107758-2107777 MsG0780036075.01.T01:intron 35.0%
CAGAAAGAAATGTACCAGAT+CGG - Chr7:2109449-2109468 None:intergenic 35.0%
CAGCAATAACGAGGAAAATT+GGG - Chr7:2109972-2109991 None:intergenic 35.0%
CATGAGTAAGAATCCCAATT+GGG - Chr7:2110524-2110543 None:intergenic 35.0%
CTGCAACATTCTATCATATG+AGG - Chr7:2107960-2107979 None:intergenic 35.0%
GAAAAGGGAATACATGCAAA+AGG - Chr7:2109109-2109128 None:intergenic 35.0%
GACCTAAATGTGTTTGTTCA+AGG - Chr7:2109215-2109234 None:intergenic 35.0%
GAGAAGTAGATTCAGTTTAG+TGG + Chr7:2108421-2108440 MsG0780036075.01.T01:intron 35.0%
GAGTAAATACTTACTACCTG+AGG + Chr7:2109731-2109750 MsG0780036075.01.T01:CDS 35.0%
GCTAAGAAGTTGAAAATGAG+GGG - Chr7:2108012-2108031 None:intergenic 35.0%
GTCACAACTCATTAATCATC+CGG + Chr7:2110121-2110140 MsG0780036075.01.T01:intron 35.0%
GTGAAGGAATTTGAGCATAA+TGG + Chr7:2108629-2108648 MsG0780036075.01.T01:intron 35.0%
GTGCTAAGAAGTTGAAAATG+AGG - Chr7:2108014-2108033 None:intergenic 35.0%
GTGCTTCATAGGCAATAAAA+GGG + Chr7:2107837-2107856 MsG0780036075.01.T01:intron 35.0%
GTTTATGACGTCCAAATTCA+GGG - Chr7:2110160-2110179 None:intergenic 35.0%
TCACAGCCAATTCTATTGAA+TGG - Chr7:2108613-2108632 None:intergenic 35.0%
TCAGGGTTAATTGCATTAAC+CGG - Chr7:2110143-2110162 None:intergenic 35.0%
TCCAGGCATATATTTCATGA+TGG + Chr7:2110444-2110463 MsG0780036075.01.T01:CDS 35.0%
TCCATCATGAAATATATGCC+TGG - Chr7:2110448-2110467 None:intergenic 35.0%
TCCTAGCACTGTATTTACAT+GGG + Chr7:2109372-2109391 MsG0780036075.01.T01:intron 35.0%
TCTACTTCTCGAAATGTGTT+TGG - Chr7:2108411-2108430 None:intergenic 35.0%
TGCTTGTTCTGTATAAATGG+TGG + Chr7:2109302-2109321 MsG0780036075.01.T01:intron 35.0%
TGTTTGTGTAAGTGCTTCAT+AGG + Chr7:2107826-2107845 MsG0780036075.01.T01:intron 35.0%
TTCAATAGAATTGGCTGTGA+AGG + Chr7:2108613-2108632 MsG0780036075.01.T01:intron 35.0%
TTCCTAGCACTGTATTTACA+TGG + Chr7:2109371-2109390 MsG0780036075.01.T01:intron 35.0%
TTCGACAACAAAATTCACCA+CGG - Chr7:2110355-2110374 None:intergenic 35.0%
TTGTGTCATCAAACCAACTT+TGG + Chr7:2108112-2108131 MsG0780036075.01.T01:intron 35.0%
TTGTTTACCTCAATGTTGCA+GGG + Chr7:2109332-2109351 MsG0780036075.01.T01:intron 35.0%
TTTGGACGTCATAAACCAAA+TGG + Chr7:2110164-2110183 MsG0780036075.01.T01:intron 35.0%
! AAATGTACCAGATCGGATTT+TGG - Chr7:2109442-2109461 None:intergenic 35.0%
! AATGTACCAGATCGGATTTT+GGG - Chr7:2109441-2109460 None:intergenic 35.0%
! AGAACCATAAGGGTGTAAAA+CGG - Chr7:2109415-2109434 None:intergenic 35.0%
! GATTTATAATCATTTGGGGC+AGG + Chr7:2108313-2108332 MsG0780036075.01.T01:intron 35.0%
! GTCTTTTCTGAACACTTTCT+TGG - Chr7:2107279-2107298 None:intergenic 35.0%
! TTGTTGATCTTTTTGCTGCA+AGG + Chr7:2109915-2109934 MsG0780036075.01.T01:CDS 35.0%
!!! TGTAGTTTTGGTCATTGCTT+TGG - Chr7:2110553-2110572 None:intergenic 35.0%
AGCTAAGCTGTTTATCCAAC+AGG + Chr7:2109017-2109036 MsG0780036075.01.T01:intron 40.0%
AGTGGAGATTGGAGTTTCAT+AGG + Chr7:2108439-2108458 MsG0780036075.01.T01:intron 40.0%
CAACTTCTTAGCACTTGGTT+GGG + Chr7:2108020-2108039 MsG0780036075.01.T01:intron 40.0%
CATCGAAACATGCTAAACAC+TGG - Chr7:2108165-2108184 None:intergenic 40.0%
CCAGCAATAACGAGGAAAAT+TGG - Chr7:2109973-2109992 None:intergenic 40.0%
CCATCTGAGTTATACTTACG+CGG - Chr7:2107874-2107893 None:intergenic 40.0%
CCTAGCACTGTATTTACATG+GGG + Chr7:2109373-2109392 MsG0780036075.01.T01:intron 40.0%
GAGATTGGAGTTTCATAGGA+GGG + Chr7:2108443-2108462 MsG0780036075.01.T01:intron 40.0%
GATGAATGAATACACACCTC+AGG - Chr7:2109750-2109769 None:intergenic 40.0%
GCTAAGCTGTTTATCCAACA+GGG + Chr7:2109018-2109037 MsG0780036075.01.T01:intron 40.0%
GGCAGGATATAAAACTCTGT+AGG + Chr7:2108330-2108349 MsG0780036075.01.T01:intron 40.0%
GGTTACTATTAGGGCATGTT+TGG + Chr7:2108758-2108777 MsG0780036075.01.T01:intron 40.0%
GGTTGATCGTATTAAGTGGT+TGG + Chr7:2110079-2110098 MsG0780036075.01.T01:intron 40.0%
GGTTTATGACGTCCAAATTC+AGG - Chr7:2110161-2110180 None:intergenic 40.0%
TCAACTTCTTAGCACTTGGT+TGG + Chr7:2108019-2108038 MsG0780036075.01.T01:intron 40.0%
TGGCGGCATTATCATAAAGT+AGG + Chr7:2108737-2108756 MsG0780036075.01.T01:intron 40.0%
TGGGCAAAAGAACAAGCAAA+AGG - Chr7:2110505-2110524 None:intergenic 40.0%
TTCAATGTAACCGCATATGC+CGG - Chr7:2108195-2108214 None:intergenic 40.0%
! ATGTACCAGATCGGATTTTG+GGG - Chr7:2109440-2109459 None:intergenic 40.0%
! CCAATTTTCCTCGTTATTGC+TGG + Chr7:2109970-2109989 MsG0780036075.01.T01:intron 40.0%
! GAACCATAAGGGTGTAAAAC+GGG - Chr7:2109414-2109433 None:intergenic 40.0%
! GCTTGTTCTTTTGCCCAATT+GGG + Chr7:2110508-2110527 MsG0780036075.01.T01:CDS 40.0%
! TGCTTGTTCTTTTGCCCAAT+TGG + Chr7:2110507-2110526 MsG0780036075.01.T01:CDS 40.0%
!! CTTATTTGCTGTGCCTTTCT+TGG + Chr7:2109679-2109698 MsG0780036075.01.T01:CDS 40.0%
!!! ATTTTGGGGCTAGAACCATA+AGG - Chr7:2109426-2109445 None:intergenic 40.0%
!!! TTTTGGGGCTAGAACCATAA+GGG - Chr7:2109425-2109444 None:intergenic 40.0%
ACTCGAATAGCTGAGATCAG+CGG - Chr7:2109149-2109168 None:intergenic 45.0%
CAAAAGGTGAATCCAAGCAG+AGG - Chr7:2109894-2109913 None:intergenic 45.0%
CAGAAAAGACAAGACCCTGT+TGG - Chr7:2109035-2109054 None:intergenic 45.0%
CATGTTTCGATGTCCAACAC+CGG + Chr7:2108173-2108192 MsG0780036075.01.T01:intron 45.0%
CCATCACTCCTGATAGAGAA+AGG - Chr7:2108383-2108402 None:intergenic 45.0%
CCCCATGTAAATACAGTGCT+AGG - Chr7:2109376-2109395 None:intergenic 45.0%
CCGCGTAAGTATAACTCAGA+TGG + Chr7:2107871-2107890 MsG0780036075.01.T01:intron 45.0%
CCTTTCTCTATCAGGAGTGA+TGG + Chr7:2108380-2108399 MsG0780036075.01.T01:intron 45.0%
CTATGAACCCTGCAACATTG+AGG - Chr7:2109342-2109361 None:intergenic 45.0%
CTCAATGTTGCAGGGTTCAT+AGG + Chr7:2109340-2109359 MsG0780036075.01.T01:intron 45.0%
GGAGATTGGAGTTTCATAGG+AGG + Chr7:2108442-2108461 MsG0780036075.01.T01:intron 45.0%
TCCTATGCTAGAAAGCTGCA+AGG - Chr7:2109843-2109862 None:intergenic 45.0%
! AGTTGACTTTAGCCTCTGCT+TGG + Chr7:2109879-2109898 MsG0780036075.01.T01:CDS 45.0%
! CGAACCGATCTTGTAGCTTT+TGG - Chr7:2108487-2108506 None:intergenic 45.0%
! CTCTGCTTGGATTCACCTTT+TGG + Chr7:2109892-2109911 MsG0780036075.01.T01:CDS 45.0%
! CTGTTTCAGGTGTCCAAGAA+AGG - Chr7:2109695-2109714 None:intergenic 45.0%
! GACTGTTTGAGACTTGAGAG+AGG + Chr7:2108823-2108842 MsG0780036075.01.T01:intron 45.0%
! TCCTTGCAGCTTTCTAGCAT+AGG + Chr7:2109839-2109858 MsG0780036075.01.T01:intron 45.0%
!! TTACCATATGTAGGGGTGCT+CGG + Chr7:2109645-2109664 MsG0780036075.01.T01:CDS 45.0%
ATGTCCAACACCGGCATATG+CGG + Chr7:2108182-2108201 MsG0780036075.01.T01:intron 50.0%
TCTAGCCCCAAAATCCGATC+TGG + Chr7:2109432-2109451 MsG0780036075.01.T01:intron 50.0%
! GCTCCCGTTTTACACCCTTA+TGG + Chr7:2109408-2109427 MsG0780036075.01.T01:intron 50.0%
!! AAGTGTCGGTGCTCCAAAGT+TGG - Chr7:2108128-2108147 None:intergenic 50.0%
ATGCCGAGCACCCCTACATA+TGG - Chr7:2109651-2109670 None:intergenic 55.0%
GTAACCGCATATGCCGGTGT+TGG - Chr7:2108189-2108208 None:intergenic 55.0%
! GTTGGGTGAGTTTTGCCGCT+AGG + Chr7:2108037-2108056 MsG0780036075.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr7 gene 2107161 2110596 2107161 ID=MsG0780036075.01;Name=MsG0780036075.01
Chr7 mRNA 2107161 2110596 2107161 ID=MsG0780036075.01.T01;Parent=MsG0780036075.01;Name=MsG0780036075.01.T01;_AED=0.41;_eAED=0.43;_QI=302|0.25|0.6|0.8|0|0|5|0|165
Chr7 exon 2107161 2107509 2107161 ID=MsG0780036075.01.T01:exon:38421;Parent=MsG0780036075.01.T01
Chr7 exon 2107770 2107832 2107770 ID=MsG0780036075.01.T01:exon:38422;Parent=MsG0780036075.01.T01
Chr7 exon 2109623 2109752 2109623 ID=MsG0780036075.01.T01:exon:38423;Parent=MsG0780036075.01.T01
Chr7 exon 2109848 2109936 2109848 ID=MsG0780036075.01.T01:exon:38424;Parent=MsG0780036075.01.T01
Chr7 exon 2110428 2110596 2110428 ID=MsG0780036075.01.T01:exon:38425;Parent=MsG0780036075.01.T01
Chr7 five_prime_UTR 2107161 2107462 2107161 ID=MsG0780036075.01.T01:five_prime_utr;Parent=MsG0780036075.01.T01
Chr7 CDS 2107463 2107509 2107463 ID=MsG0780036075.01.T01:cds;Parent=MsG0780036075.01.T01
Chr7 CDS 2107770 2107832 2107770 ID=MsG0780036075.01.T01:cds;Parent=MsG0780036075.01.T01
Chr7 CDS 2109623 2109752 2109623 ID=MsG0780036075.01.T01:cds;Parent=MsG0780036075.01.T01
Chr7 CDS 2109848 2109936 2109848 ID=MsG0780036075.01.T01:cds;Parent=MsG0780036075.01.T01
Chr7 CDS 2110428 2110596 2110428 ID=MsG0780036075.01.T01:cds;Parent=MsG0780036075.01.T01
Gene Sequence

>MsG0780036075.01.T01

ATGTCTTCTCTTCTTGCTATTCTTATTCACCATTACCATTTAATAAGGTGCATGTTGGTATATAAATATGTAGAATTGACACTTCACATTGATGTCAGTGTCATGTTTGTACCAAAGTCTATGGAAAGTAGTTTACCATATGTAGGGGTGCTCGGCATTCTATATGCTTATTTGCTGTGCCTTTCTTGGACACCTGAAACAGTTCGATTGATTTTCGCGAGTAAATACTTACTACCTGAGCTTTCTAGCATAGGAAAAATGTTCTCTAGTGAGTTGACTTTAGCCTCTGCTTGGATTCACCTTTTGGTTGTTGATCTTTTTGCTGCAAGTATTTTTGGTTCAAAATCCAGGCATATATTTCATGATGGACTGAAGAATCAGATTGAAACTCGGCATTCAGTTTCCTTTTGCTTGTTCTTTTGCCCAATTGGGATTCTTACTCATGTCATCACCAAAGCAATGACCAAAACTACAAGAAAAGATGGTCATGGTTTATAG
Protein sequence

>MsG0780036075.01.T01

MSSLLAILIHHYHLIRCMLVYKYVELTLHIDVSVMFVPKSMESSLPYVGVLGILYAYLLCLSWTPETVRLIFASKYLLPELSSIGKMFSSELTLASAWIHLLVVDLFAASIFGSKSRHIFHDGLKNQIETRHSVSFCLFFCPIGILTHVITKAMTKTTRKDGHGL*