AlfalfaGEDB | MsG0780038188.01

M. sativa cultivar ZhongmuNo.1 / MsG0780038188.01

KEGG: K03283
GO: -
PFAM: PF00012

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038188.01.T01	KEH37136.1	67.112	374	96	1	1	374	108	454	4.84E-175	505

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038188.01.T01	P09189	70.769	260	76	0	1	260	106	365	2.46E-133	398

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038188.01.T01	A0A072V683	67.112	374	96	1	1	374	108	454	2.31e-175	505

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048461.01	MsG0780038188.01	0.819773	9.739368e-53	7.565559e-50
MsG0080048462.01	MsG0780038188.01	0.808545	2.938687e-50	1.684970e-47
MsG0080048769.01	MsG0780038188.01	0.803310	3.705972e-49	1.856148e-46
MsG0080048856.01	MsG0780038188.01	0.819284	1.259375e-52	9.649241e-50
MsG0180000145.01	MsG0780038188.01	0.830245	3.273687e-55	3.430049e-52
MsG0180000334.01	MsG0780038188.01	0.804375	2.226939e-49	1.146359e-46
MsG0180000470.01	MsG0780038188.01	0.817179	3.771741e-52	2.727308e-49
MsG0180000836.01	MsG0780038188.01	0.802888	4.529904e-49	2.244594e-46
MsG0180001892.01	MsG0780038188.01	0.846927	1.596749e-59	2.791794e-56
MsG0180003371.01	MsG0780038188.01	0.811883	5.601265e-51	3.508190e-48

Showing 1 to 10 of 114 entries

Previous1 2 3 4 5…12Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038188.01.T01	MTR_2g032160	67.112	374	96	1	1	374	108	454	5.87e-179	505
MsG0780038188.01.T01	MTR_7g451380	85.769	260	37	0	1	260	108	367	9.34e-157	454
MsG0780038188.01.T01	MTR_7g451380	78.070	114	25	0	261	374	496	609	2.32e-50	178
MsG0780038188.01.T01	MTR_2g038260	79.231	260	54	0	1	260	108	367	3.13e-149	435
MsG0780038188.01.T01	MTR_2g038260	63.158	114	41	1	261	374	496	608	5.69e-37	141
MsG0780038188.01.T01	MTR_4g079590	78.462	260	56	0	1	260	108	367	9.26e-147	429
MsG0780038188.01.T01	MTR_4g079590	61.207	116	45	0	259	374	493	608	1.59e-35	137
MsG0780038188.01.T01	MTR_2g437440	78.462	260	56	0	1	260	108	367	8.02e-145	423
MsG0780038188.01.T01	MTR_2g437440	64.634	82	29	0	291	372	508	589	9.56e-24	103
MsG0780038188.01.T01	MTR_2g032550	76.154	260	62	0	1	260	109	368	6.91e-144	422

Showing 1 to 10 of 163 entries

Previous1 2 3 4 5…17Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038188.01.T01	AT5G02500	57.979	376	152	3	1	374	106	477	1.15e-151	438
MsG0780038188.01.T01	AT5G02500	70.000	260	78	0	1	260	106	365	1.56e-132	394
MsG0780038188.01.T01	AT5G02500	43.103	116	65	1	259	374	493	607	6.74e-20	91.7
MsG0780038188.01.T01	AT3G12580	70.385	260	77	0	1	260	106	365	2.34e-132	393
MsG0780038188.01.T01	AT3G12580	44.828	116	63	1	259	374	493	607	1.10e-20	94.4
MsG0780038188.01.T01	AT3G09440	69.615	260	79	0	1	260	106	365	4.96e-131	390
MsG0780038188.01.T01	AT3G09440	42.241	116	66	1	259	374	493	607	7.30e-20	91.7
MsG0780038188.01.T01	AT3G09440	69.615	260	79	0	1	260	106	365	4.96e-131	390
MsG0780038188.01.T01	AT3G09440	42.241	116	66	1	259	374	493	607	7.30e-20	91.7
MsG0780038188.01.T01	AT3G09440	69.615	260	79	0	1	260	106	365	4.96e-131	390

Showing 1 to 10 of 47 entries

Previous1 2 3 4 5Next

Find 71 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGCGGGAGATTGCAG+AGG	0.680528	7:-41799600	MsG0780038188.01.T01:CDS
AAAGTTTGAGGAAATCAATA+TGG	0.473441	7:-41799069	MsG0780038188.01.T01:CDS
AAATGAAAGTGATGTTCTTG+AGG	0.569568	7:-41798216	MsG0780038188.01.T01:CDS
AAGATTGATTGAAGAAGCTG+AGG	0.587170	7:-41798429	MsG0780038188.01.T01:CDS
AAGCTCGTTCTTACTATCTG+TGG	0.510145	7:+41798496	None:intergenic
AAGGTGAGTGTTTCCACCAG+TGG	0.547001	7:+41799307	None:intergenic
AATCTCTCGTGCAAAGTTTG+AGG	0.432408	7:-41799081	MsG0780038188.01.T01:CDS
AATGACACCAGCATCTATGG+TGG	0.667765	7:+41799505	None:intergenic
ACGCAGTTCTCAACCTCCTT+AGG	0.321307	7:+41799192	None:intergenic
ACTGGTGGAAACACTCACCT+TGG	0.538678	7:-41799305	MsG0780038188.01.T01:CDS

Showing 1 to 10 of 71 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAAAGTGATGTTCTTG+AGG	-	Chr7:41799648-41799667	MsG0780038188.01.T01:CDS	30.0%
AGAATTTCCTATCATCGATA+CGG	+	Chr7:41799465-41799484	None:intergenic	30.0%
CTTACAATAACCAATGACAT+AGG	-	Chr7:41799388-41799407	MsG0780038188.01.T01:CDS	30.0%
TGAGAATTGTTGAAATAAGC+AGG	+	Chr7:41798331-41798350	None:intergenic	30.0%
TGATAGGAAATTCTTGAGAA+AGG	-	Chr7:41799471-41799490	MsG0780038188.01.T01:CDS	30.0%
TGTGTCTCTTCTTACAATTA+AGG	-	Chr7:41798513-41798532	MsG0780038188.01.T01:CDS	30.0%
AAGATTGATTGAAGAAGCTG+AGG	-	Chr7:41799435-41799454	MsG0780038188.01.T01:CDS	35.0%
ATTTGTCTTCTTGACAGGAA+TGG	+	Chr7:41799148-41799167	None:intergenic	35.0%
CAATAACCAATGACATAGGA+AGG	-	Chr7:41799392-41799411	MsG0780038188.01.T01:CDS	35.0%
GAGAAATGTGTTGAAGAAGA+AGG	-	Chr7:41799534-41799553	MsG0780038188.01.T01:CDS	35.0%

Showing 1 to 10 of 116 entries

Previous1 2 3 4 5…12Next

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	41798193	41799693	41798193	ID=MsG0780038188.01;Name=MsG0780038188.01
Chr7	mRNA	41798193	41799693	41798193	ID=MsG0780038188.01.T01;Parent=MsG0780038188.01;Name=MsG0780038188.01.T01;_AED=0.42;_eAED=0.42;_QI=0\|0\|0\|1\|0\|0\|2\|0\|374
Chr7	exon	41798916	41799693	41798916	ID=MsG0780038188.01.T01:exon:1650;Parent=MsG0780038188.01.T01
Chr7	exon	41798193	41798536	41798193	ID=MsG0780038188.01.T01:exon:1649;Parent=MsG0780038188.01.T01
Chr7	CDS	41798916	41799693	41798916	ID=MsG0780038188.01.T01:cds;Parent=MsG0780038188.01.T01
Chr7	CDS	41798193	41798536	41798193	ID=MsG0780038188.01.T01:cds;Parent=MsG0780038188.01.T01

Gene Sequence

>MsG0780038188.01.T01

ATGATTTCCCTCAAGTACAAGAGACAGGAGAAGCTCTTTTGTGCTGAGGAAATCTCATCTATGGTACTCACAAAGAAGCGGGAGATTGCAGAGGCATATCTGGAATCACTGGTTAAGAATGCTGTCATTACTGTGCCTGCTTATTTCAACAATTCTCAAAGAAAAGCCACCATAGATGCTGGTGTCATTGCTGGTCTCAATGTTTTGAAGGTAATCAATGAACCAACTGCTGCAGCTATTGCATATGTCCTTGAAAAGAGAACTGACTGTGATGGTAAACGGAATATTTTTGTCTTTGACCTTGGTGGTGGGACTTTTGATGTGTCTCTTCTTACAATTAAGGATAAGGTCTTCGAAGTTAAGGCCACTGGTGGAAACACTCACCTTGGGGGAGAGGACTTTGATAATAGAATGGTGAACTATTTTGTAGAGGAGATCAAAAGGAAGAAAAATTTGGACATCATTGGGAACCCAAAAGCCCTAAGGAGGTTGAGAACTGCGTGCGAGAAGGCAAAAAGGACATTATCTTTTGCTGTTGTCACCAATGTTGAGGTCGATGCTTTGTTTCAGGGTGTTGATTTTTCTTCATCAATCTCTCGTGCAAAGTTTGAGGAAATCAATATGGACCTTTTTAATGAGTGCATGGAGACTGTTGAGAGGTGTTTTACTGATGCTAAGATGGACAAGAATAGTGTTGATGATGTTGTCCTTGTTGGTGGATCTTCTAGGATTCCTAAAGTGCAGCAACTATTGCAGGACTTCTTCTACCGGAAGGATTTTTCTGCTATGGACAAATCCACAGATAGTAAGAACGAGCTTACAATAACCAATGACATAGGAAGGTTATCGACTAAAGAAATCAAAAGATTGATTGAAGAAGCTGAGGCTTACCGTATCGATGATAGGAAATTCTTGAGAAAGGCTGAAGTCATGAATGCTCTGGATCACTGTATTTACAAAATGAGAAATGTGTTGAAGAAGAAGGATATTAATCTAAAGCTCTCTTCAGAAGAAAACAAGAAGATCAATACTGCAATTACCGTGGCCGCAAATTTTCTTGATGTGAATGATCGTCAAAATGAAAGTGATGTTCTTGAGGACCACTTGAATGAGCTTGAGAGC

Protein sequence

>MsG0780038188.01.T01

MISLKYKRQEKLFCAEEISSMVLTKKREIAEAYLESLVKNAVITVPAYFNNSQRKATIDAGVIAGLNVLKVINEPTAAAIAYVLEKRTDCDGKRNIFVFDLGGGTFDVSLLTIKDKVFEVKATGGNTHLGGEDFDNRMVNYFVEEIKRKKNLDIIGNPKALRRLRTACEKAKRTLSFAVVTNVEVDALFQGVDFSSSISRAKFEEINMDLFNECMETVERCFTDAKMDKNSVDDVVLVGGSSRIPKVQQLLQDFFYRKDFSAMDKSTDSKNELTITNDIGRLSTKEIKRLIEEAEAYRIDDRKFLRKAEVMNALDHCIYKMRNVLKKKDINLKLSSEENKKINTAITVAANFLDVNDRQNESDVLEDHLNELES