AlfalfaGEDB | MsG0780038416.01

M. sativa cultivar ZhongmuNo.1 / MsG0780038416.01

KEGG: K00224
GO: GO:0016491 GO:0055114
PFAM: PF00107 PF08240

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038416.01.T01	XP_024625866.2	93.056	288	16	1	1	284	1	288	0	540

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038416.01.T01	Q9SV68	69.444	288	84	1	1	284	1	288	5.42E-140	400

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038416.01.T01	A0A396GZ73	93.056	288	16	1	1	284	1	288	0.0	540

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047910.01	MsG0780038416.01	0.814995	1.159719e-51	7.899635e-49
MsG0080048059.01	MsG0780038416.01	0.813762	2.172465e-51	1.431195e-48
MsG0080048068.01	MsG0780038416.01	0.837542	4.889525e-57	6.371677e-54
MsG0080048273.01	MsG0780038416.01	0.844664	6.572394e-59	1.068600e-55
MsG0080048274.01	MsG0780038416.01	0.836335	9.939255e-57	1.248841e-53
MsG0080048528.01	MsG0780038416.01	0.815004	1.154430e-51	7.865560e-49
MsG0080048887.01	MsG0780038416.01	0.830144	3.464726e-55	3.619646e-52
MsG0080048896.01	MsG0780038416.01	0.837492	5.033985e-57	6.550396e-54
MsG0080048900.01	MsG0780038416.01	0.825962	3.520791e-54	3.257559e-51
MsG0080048929.01	MsG0780038416.01	0.815225	1.030751e-51	7.064838e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038416.01.T01	MTR_7g055743	92.910	268	15	1	21	284	61	328	1.44e-180	502
MsG0780038416.01.T01	MTR_4g036310	65.854	287	94	1	1	283	1	287	1.50e-132	379
MsG0780038416.01.T01	MTR_4g033205	65.157	287	96	1	1	283	1	287	2.10e-129	371
MsG0780038416.01.T01	MTR_4g032995	64.808	287	97	1	1	283	1	287	2.09e-128	368
MsG0780038416.01.T01	MTR_4g036260	70.175	228	64	1	60	283	39	266	5.52e-110	321
MsG0780038416.01.T01	MTR_4g036170	54.064	283	109	4	1	283	1	262	1.04e-95	284
MsG0780038416.01.T01	MTR_8g064610	37.229	231	126	5	6	224	76	299	6.16e-32	122
MsG0780038416.01.T01	MTR_8g035630	32.707	266	150	6	6	257	3	253	2.61e-30	117
MsG0780038416.01.T01	MTR_8g035880	32.707	266	150	6	6	257	3	253	4.43e-30	116
MsG0780038416.01.T01	MTR_4g036150	63.380	71	25	1	1	70	1	71	1.17e-24	94.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038416.01.T01	AT4G13010	69.444	288	84	1	1	284	1	288	5.53e-141	400
MsG0780038416.01.T01	AT1G23740	35.385	260	143	7	4	251	76	322	4.49e-28	111
MsG0780038416.01.T01	AT3G15090	32.127	221	137	4	7	222	33	245	7.41e-22	94.4
MsG0780038416.01.T01	AT1G49670	34.031	191	111	6	19	204	301	481	2.71e-19	88.2
MsG0780038416.01.T01	AT1G49670	31.100	209	116	6	19	204	301	504	5.38e-17	81.3
MsG0780038416.01.T01	AT4G21580	31.140	228	143	8	16	239	10	227	2.22e-16	78.2
MsG0780038416.01.T01	AT4G21580	31.278	227	138	8	16	239	10	221	1.54e-15	75.9
MsG0780038416.01.T01	AT4G21580	30.729	192	120	7	52	239	12	194	4.45e-12	65.5
MsG0780038416.01.T01	AT5G61510	28.155	206	136	5	2	204	80	276	3.38e-11	63.5

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Find 78 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGGTGACAAAGTTGT+AGG	0.479548	7:+46383762	MsG0780038416.01.T01:CDS
AACTGAAGATCCTTACCCTT+TGG	0.394161	7:-46384771	None:intergenic
AACTTGATGGAACTGGCGAG+CGG	0.690540	7:+46384382	MsG0780038416.01.T01:CDS
AAGAAGTAGAAGAACCTTTA+AGG	0.200493	7:-46381481	None:intergenic
AAGTACAGAAACGCATGTTG+TGG	0.646892	7:+46382886	MsG0780038416.01.T01:CDS
AAGTTTGATTCCTATGGATT+TGG	0.328504	7:-46384364	None:intergenic
ACATGGTATATATGGGAACT+TGG	0.459439	7:-46382922	None:intergenic
ACGGCTGCATCAGGTGGTGT+AGG	0.587496	7:+46384420	MsG0780038416.01.T01:CDS
ACTCACGTAACAGCCACCTG+CGG	0.724816	7:+46384477	MsG0780038416.01.T01:CDS
ACTTCATCTTTACTAGGACT+TGG	0.510602	7:-46382819	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAATGTTTCCGATGAA+AGG	-	Chr7:46384026-46384045	None:intergenic	30.0%
AAGAAGTAGAAGAACCTTTA+AGG	-	Chr7:46381484-46381503	None:intergenic	30.0%
AAGTTTATACACCAATTGGT+GGG	+	Chr7:46383580-46383599	MsG0780038416.01.T01:intron	30.0%
AAGTTTGATTCCTATGGATT+TGG	-	Chr7:46384367-46384386	None:intergenic	30.0%
AATGTAGAAGTTATATGACG+AGG	-	Chr7:46381768-46381787	None:intergenic	30.0%
ACATTGGTATCAAAATTAGC+TGG	+	Chr7:46382388-46382407	MsG0780038416.01.T01:intron	30.0%
AGGAAGATACATGGTATATA+TGG	-	Chr7:46382933-46382952	None:intergenic	30.0%
ATGGAAATTGTCAAAAGCTT+AGG	+	Chr7:46384510-46384529	MsG0780038416.01.T01:CDS	30.0%
ATGTAGAAGTTATATGACGA+GGG	-	Chr7:46381767-46381786	None:intergenic	30.0%
ATGTGAAAAATTGTATTCCC+TGG	+	Chr7:46382361-46382380	MsG0780038416.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	46381414	46385071	46381414	ID=MsG0780038416.01;Name=MsG0780038416.01
Chr7	mRNA	46381414	46385071	46381414	ID=MsG0780038416.01.T01;Parent=MsG0780038416.01;Name=MsG0780038416.01.T01;_AED=0.33;_eAED=0.33;_QI=9\|0.66\|0.75\|1\|1\|1\|4\|265\|285
Chr7	exon	46381414	46381488	46381414	ID=MsG0780038416.01.T01:exon:5245;Parent=MsG0780038416.01.T01
Chr7	exon	46382801	46382942	46382801	ID=MsG0780038416.01.T01:exon:5246;Parent=MsG0780038416.01.T01
Chr7	exon	46383709	46383788	46383709	ID=MsG0780038416.01.T01:exon:5247;Parent=MsG0780038416.01.T01
Chr7	exon	46384237	46385071	46384237	ID=MsG0780038416.01.T01:exon:5248;Parent=MsG0780038416.01.T01
Chr7	five_prime_UTR	46381414	46381422	46381414	ID=MsG0780038416.01.T01:five_prime_utr;Parent=MsG0780038416.01.T01
Chr7	CDS	46381423	46381488	46381423	ID=MsG0780038416.01.T01:cds;Parent=MsG0780038416.01.T01
Chr7	CDS	46382801	46382942	46382801	ID=MsG0780038416.01.T01:cds;Parent=MsG0780038416.01.T01
Chr7	CDS	46383709	46383788	46383709	ID=MsG0780038416.01.T01:cds;Parent=MsG0780038416.01.T01
Chr7	CDS	46384237	46384806	46384237	ID=MsG0780038416.01.T01:cds;Parent=MsG0780038416.01.T01
Chr7	three_prime_UTR	46384807	46385071	46384807	ID=MsG0780038416.01.T01:three_prime_utr;Parent=MsG0780038416.01.T01

Gene Sequence

>MsG0780038416.01.T01

ATGGAGAACAAACTCATGCGTGCTGTTCAGTACTATGCCTATGGTGGAGGATCCACTGCCTTAAAGCATGTTGAAGTTCCCATACCAAGTCCTAGTAAAGATGAAGTTTTGATAAAATTGGAAGCAGCTAGTATAAATCCATTTGATTGGAAAGTACAGAAACGCATGTTGTGGCCATTTTTGCCTCCCAAGTTCCCATATATACCATGTACTGATGTAGCAGGAGAGGTCATGGAGGTTGGTAAAGGTGTTAAGAAGTTCAAAACTGGTGACAAAGTTGTAGGCGTAAGTGGTGGAGGTCTAGCTGAGTTTGCTGTTGTTAAGGAGAGTCTCACTGCTTCAATACCACCAGAAATCTCAGCATCTGAATGCGCCGGCTTACCTGTCGCCGGTCTAACAGCTCTCCAAGCACTCACCAAATCCATAGGAATCAAACTTGATGGAACTGGCGAGCGGAAAAACATTTTGATCACGGCTGCATCAGGTGGTGTAGGACACTATGCAGTTCAATTAGCCAAGCTAGGTAACACTCACGTAACAGCCACCTGCGGCGCTCGAAACATGGAAATTGTCAAAAGCTTAGGAGCTGATGAGGTAATTGACTATAAAACACCAATTGGTGTTGAATTAAAGAGTCCTTCTGGTAAGAAATATGACGCAGTGGTTCATTGTGCAACGGATATTGCATGGTCAGTTTTTGAGCCTAACTTGAACACGAATGGTAAGGTTGTAGATATAACTCCTAGCTCTACTTCAATGTTGACATTTGCTCTTACTAAAATTACCTTCTCCAAAAAACAACTTGTGCCTTTGCTTCTAATTCCAAAGGGTAAGGATCTTCAGTTCTTGTTGATTTGA

Protein sequence

>MsG0780038416.01.T01

MENKLMRAVQYYAYGGGSTALKHVEVPIPSPSKDEVLIKLEAASINPFDWKVQKRMLWPFLPPKFPYIPCTDVAGEVMEVGKGVKKFKTGDKVVGVSGGGLAEFAVVKESLTASIPPEISASECAGLPVAGLTALQALTKSIGIKLDGTGERKNILITAASGGVGHYAVQLAKLGNTHVTATCGARNMEIVKSLGADEVIDYKTPIGVELKSPSGKKYDAVVHCATDIAWSVFEPNLNTNGKVVDITPSSTSMLTFALTKITFSKKQLVPLLLIPKGKDLQFLLI*