AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038823.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038823.01.T01 MTR_7g062610 96.364 165 6 0 6 170 74 238 1.64e-115 331
MsG0780038823.01.T01 MTR_3g068015 71.429 161 45 1 6 165 79 239 2.65e-82 247
MsG0780038823.01.T01 MTR_8g107140 53.846 169 73 2 4 170 76 241 6.76e-59 187
MsG0780038823.01.T01 MTR_8g036215 52.663 169 77 2 4 171 69 235 3.42e-56 180
MsG0780038823.01.T01 MTR_6g079580 51.497 167 76 2 6 170 73 236 4.70e-55 177
MsG0780038823.01.T01 MTR_3g111620 51.250 160 76 2 6 164 78 236 1.94e-50 166
MsG0780038823.01.T01 MTR_5g059200 45.402 174 89 3 6 179 77 244 1.36e-49 165
MsG0780038823.01.T01 MTR_1g021945 51.572 159 75 2 8 165 79 236 4.08e-48 160
MsG0780038823.01.T01 MTR_7g062600 89.655 87 9 0 167 253 164 250 6.07e-47 160
MsG0780038823.01.T01 MTR_8g075550 45.856 181 89 3 6 178 79 258 1.19e-46 158
MsG0780038823.01.T01 MTR_1g062340 50.610 164 77 4 4 165 71 232 2.52e-46 155
MsG0780038823.01.T01 MTR_1g062350 51.220 164 76 4 4 165 71 232 2.63e-46 155
MsG0780038823.01.T01 MTR_2g069660 50.311 161 77 3 6 164 73 232 5.26e-46 154
MsG0780038823.01.T01 MTR_8g037890 43.814 194 105 3 6 196 77 269 9.02e-46 156
MsG0780038823.01.T01 MTR_8g056820 45.304 181 92 4 6 180 77 256 1.54e-45 154
MsG0780038823.01.T01 MTR_1g062370 49.390 164 79 4 4 165 71 232 3.09e-45 152
MsG0780038823.01.T01 MTR_1g062660 50.617 162 76 4 6 165 73 232 4.18e-45 152
MsG0780038823.01.T01 MTR_5g022350 47.619 168 82 3 4 170 77 239 4.18e-45 154
MsG0780038823.01.T01 MTR_1g025420 51.220 164 75 5 4 163 72 234 1.29e-44 153
MsG0780038823.01.T01 MTR_1g025420 48.901 182 87 6 4 180 72 252 1.37e-44 151
MsG0780038823.01.T01 MTR_7g062580 83.908 87 14 0 167 253 168 254 6.05e-44 152
MsG0780038823.01.T01 MTR_3g114030 50.299 167 78 5 6 168 58 223 7.28e-44 149
MsG0780038823.01.T01 MTR_4g073720 47.853 163 79 3 4 165 74 231 1.46e-43 151
MsG0780038823.01.T01 MTR_5g022310 46.552 174 85 5 4 170 75 247 2.37e-43 148
MsG0780038823.01.T01 MTR_8g075510 45.783 166 84 3 4 168 77 237 3.09e-43 147
MsG0780038823.01.T01 MTR_8g075510 45.783 166 84 3 4 168 77 237 3.52e-43 149
MsG0780038823.01.T01 MTR_5g022310 46.552 174 85 5 4 170 75 247 4.03e-43 149
MsG0780038823.01.T01 MTR_7g102380 45.833 168 86 5 6 170 72 237 6.40e-43 146
MsG0780038823.01.T01 MTR_1g062590 47.500 160 80 4 6 163 73 230 7.80e-43 146
MsG0780038823.01.T01 MTR_1g062630 47.531 162 81 4 4 163 71 230 3.20e-42 145
MsG0780038823.01.T01 MTR_2g067980 46.296 162 84 3 6 165 78 238 3.82e-42 154
MsG0780038823.01.T01 MTR_6g009480 46.154 169 87 3 6 170 80 248 7.23e-42 144
MsG0780038823.01.T01 MTR_7g062570 77.011 87 20 0 167 253 168 254 4.94e-41 144
MsG0780038823.01.T01 MTR_2g068030 43.827 162 88 3 6 165 75 235 5.42e-41 142
MsG0780038823.01.T01 MTR_7g062550 80.460 87 17 0 167 253 173 259 1.01e-40 144
MsG0780038823.01.T01 MTR_7g045650 78.161 87 19 0 167 253 173 259 2.04e-40 142
MsG0780038823.01.T01 MTR_4g063630 39.645 169 98 2 4 169 79 246 3.31e-40 139
MsG0780038823.01.T01 MTR_4g073730 45.882 170 86 4 6 170 76 244 6.76e-39 137
MsG0780038823.01.T01 MTR_8g089020 48.819 127 61 1 37 163 31 153 1.09e-38 133
MsG0780038823.01.T01 MTR_4g073730 45.349 172 88 4 4 170 74 244 1.38e-38 137
MsG0780038823.01.T01 MTR_2g068655 42.188 192 106 5 4 191 80 270 8.93e-38 135
MsG0780038823.01.T01 MTR_7g063730 68.966 87 27 0 167 253 177 263 1.35e-37 136
MsG0780038823.01.T01 MTR_5g010640 42.073 164 80 5 6 163 70 224 1.73e-33 122
MsG0780038823.01.T01 MTR_5g010635 42.945 163 81 5 6 168 68 218 2.24e-33 121
MsG0780038823.01.T01 MTR_1g062690 45.062 162 61 4 6 165 73 208 3.52e-33 120
MsG0780038823.01.T01 MTR_8g096900 38.365 159 85 5 6 164 92 237 1.40e-27 106
MsG0780038823.01.T01 MTR_2g067970 37.267 161 93 5 6 160 11 169 1.96e-26 108
MsG0780038823.01.T01 MTR_7g062560 57.576 99 35 1 162 253 153 251 4.42e-26 105
MsG0780038823.01.T01 MTR_2g063150 35.256 156 89 5 8 157 86 235 1.27e-21 91.3
MsG0780038823.01.T01 MTR_2g067990 38.816 152 74 7 6 155 71 205 3.03e-21 93.2
MsG0780038823.01.T01 MTR_1g062390 31.737 167 99 5 6 165 70 228 2.23e-19 84.7
MsG0780038823.01.T01 MTR_7g076360 32.895 152 55 3 21 171 57 162 3.99e-17 77.0
MsG0780038823.01.T01 MTR_5g023850 40.000 110 62 4 6 112 79 187 2.18e-16 76.3
MsG0780038823.01.T01 MTR_0009s0480 40.244 82 49 0 170 251 162 243 2.25e-16 77.0
MsG0780038823.01.T01 MTR_5g048850 37.500 80 50 0 170 249 163 242 3.06e-16 77.0
MsG0780038823.01.T01 MTR_5g048850 36.585 82 52 0 170 251 163 244 4.27e-16 77.4
MsG0780038823.01.T01 MTR_0056s0160 37.500 80 50 0 170 249 48 127 4.46e-16 75.5
MsG0780038823.01.T01 MTR_0009s0480 40.244 82 49 0 170 251 162 243 4.63e-16 77.0
MsG0780038823.01.T01 MTR_5g022350 50.667 75 34 2 4 77 142 214 1.17e-15 74.3
MsG0780038823.01.T01 MTR_0009s0050 38.750 80 49 0 170 249 65 144 2.74e-15 73.9
MsG0780038823.01.T01 MTR_0009s0050 38.750 80 49 0 170 249 65 144 3.36e-15 73.6
MsG0780038823.01.T01 MTR_5g055690 38.272 81 50 0 170 250 164 244 4.21e-15 73.6
MsG0780038823.01.T01 MTR_8g064200 34.211 114 73 1 138 251 144 255 4.40e-15 74.3
MsG0780038823.01.T01 MTR_8g064200 34.211 114 73 1 138 251 139 250 4.53e-15 74.3
MsG0780038823.01.T01 MTR_5g055820 38.554 83 50 1 170 251 163 245 5.08e-15 74.3
MsG0780038823.01.T01 MTR_5g048550 38.750 80 49 0 170 249 163 242 5.17e-15 74.3
MsG0780038823.01.T01 MTR_5g055690 38.272 81 50 0 170 250 164 244 6.77e-15 73.9
MsG0780038823.01.T01 MTR_0009s0050 35.354 99 64 0 151 249 144 242 8.01e-15 73.6
MsG0780038823.01.T01 MTR_5g055800 37.805 82 51 0 170 251 163 244 8.61e-15 73.6
MsG0780038823.01.T01 MTR_0009s0050 38.750 80 49 0 170 249 163 242 8.63e-15 73.6
MsG0780038823.01.T01 MTR_5g055900 35.000 100 65 0 151 250 144 243 1.66e-14 72.8
MsG0780038823.01.T01 MTR_4g116010 41.176 85 47 2 167 249 161 244 1.96e-14 72.4
MsG0780038823.01.T01 MTR_0328s0030 37.805 82 51 0 170 251 161 242 2.03e-14 72.4
MsG0780038823.01.T01 MTR_8g096910 39.423 104 57 5 6 109 67 164 3.24e-14 69.3
MsG0780038823.01.T01 MTR_5g048570 34.343 99 65 0 151 249 142 240 4.66e-14 71.2
MsG0780038823.01.T01 MTR_5g055680 34.000 100 66 0 151 250 144 243 4.66e-14 71.2
MsG0780038823.01.T01 MTR_4g087100 41.975 81 46 1 169 249 159 238 8.45e-14 70.5
MsG0780038823.01.T01 MTR_2g437380 41.333 75 44 0 167 241 73 147 1.46e-13 69.3
MsG0780038823.01.T01 MTR_2g437380 41.333 75 44 0 167 241 167 241 2.77e-13 69.3
MsG0780038823.01.T01 MTR_3g063180 41.463 82 47 1 168 249 162 242 3.16e-13 68.9
MsG0780038823.01.T01 MTR_5g048470 31.579 114 76 1 138 251 140 251 3.57e-13 68.9
MsG0780038823.01.T01 MTR_0009s0050 43.333 60 34 0 192 251 5 64 5.03e-13 66.2
MsG0780038823.01.T01 MTR_7g068650 39.796 98 50 2 161 249 159 256 5.19e-13 68.6
MsG0780038823.01.T01 MTR_8g075890 43.617 94 51 2 167 260 155 246 5.62e-13 68.2
MsG0780038823.01.T01 MTR_5g059130 34.783 115 63 4 140 249 133 240 1.10e-12 67.4
MsG0780038823.01.T01 MTR_3g070860 38.298 94 53 2 158 249 161 251 1.35e-12 67.0
MsG0780038823.01.T01 MTR_3g026150 37.500 96 58 1 168 261 71 166 1.46e-12 66.2
MsG0780038823.01.T01 MTR_2g072910 37.500 80 50 0 170 249 169 248 1.79e-12 66.2
MsG0780038823.01.T01 MTR_3g026150 37.500 96 58 1 168 261 174 269 1.98e-12 66.2
MsG0780038823.01.T01 MTR_5g048740 33.735 83 54 1 170 251 161 243 2.23e-12 66.6
MsG0780038823.01.T01 MTR_2g072910 37.500 80 50 0 170 249 169 248 2.65e-12 66.2
MsG0780038823.01.T01 MTR_8g075830 42.697 89 50 1 161 249 149 236 2.69e-12 66.2
MsG0780038823.01.T01 MTR_4g087120 37.647 85 52 1 169 253 159 242 3.35e-12 65.9
MsG0780038823.01.T01 MTR_1g062640 39.362 94 54 3 10 102 62 153 3.55e-12 63.2
MsG0780038823.01.T01 MTR_3g026150 37.500 96 58 1 168 261 174 269 3.78e-12 65.9
MsG0780038823.01.T01 MTR_5g082750 40.449 89 48 2 163 249 165 250 5.78e-12 65.5
MsG0780038823.01.T01 MTR_4g115990 38.095 84 51 1 167 249 140 223 6.09e-12 65.1
MsG0780038823.01.T01 MTR_3g058610 40.449 89 52 1 161 249 149 236 6.56e-12 65.1
MsG0780038823.01.T01 MTR_2g072890 36.250 80 51 0 170 249 170 249 6.94e-12 65.1
MsG0780038823.01.T01 MTR_3g117420 38.272 81 49 1 170 249 170 250 1.54e-11 63.9
MsG0780038823.01.T01 MTR_4g015790 41.573 89 49 1 169 254 181 269 1.68e-11 63.9
MsG0780038823.01.T01 MTR_5g065010 40.230 87 49 2 167 251 152 237 1.79e-11 63.9
MsG0780038823.01.T01 MTR_4g087110 38.824 85 51 1 169 253 159 242 2.44e-11 63.5
MsG0780038823.01.T01 MTR_5g022020 40.351 114 63 3 150 260 135 246 2.63e-11 63.2
MsG0780038823.01.T01 MTR_8g088960 43.902 82 41 3 57 137 15 92 3.79e-11 58.9
MsG0780038823.01.T01 MTR_8g074070 37.037 81 50 1 170 249 170 250 5.12e-11 62.4
MsG0780038823.01.T01 MTR_3g072820 37.391 115 60 4 140 249 131 238 9.08e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038823.01.T01 AT5G02140 80.723 166 31 1 6 170 72 237 1.02e-87 263
MsG0780038823.01.T01 AT5G02140 80.723 166 31 1 6 170 72 237 1.33e-87 260
MsG0780038823.01.T01 AT1G18250 55.090 167 70 3 6 170 72 235 7.65e-57 182
MsG0780038823.01.T01 AT1G18250 55.090 167 70 3 6 170 73 236 8.32e-57 182
MsG0780038823.01.T01 AT1G73620 51.479 169 77 3 4 170 91 256 2.74e-54 176
MsG0780038823.01.T01 AT1G75030 50.296 169 81 2 4 170 72 239 3.46e-53 173
MsG0780038823.01.T01 AT5G24620 47.514 181 88 2 6 179 76 256 1.17e-52 176
MsG0780038823.01.T01 AT5G24620 47.514 181 88 2 6 179 131 311 1.94e-52 177
MsG0780038823.01.T01 AT5G24620 47.514 181 88 2 6 179 152 332 3.39e-52 177
MsG0780038823.01.T01 AT1G77700 48.571 175 85 2 6 180 109 278 3.27e-50 167
MsG0780038823.01.T01 AT1G77700 47.977 173 85 2 4 176 107 274 5.84e-50 167
MsG0780038823.01.T01 AT1G77700 48.538 171 83 2 6 176 137 302 9.90e-50 167
MsG0780038823.01.T01 AT1G19320 50.920 163 77 1 4 163 74 236 2.13e-49 163
MsG0780038823.01.T01 AT1G75800 49.425 174 80 5 4 170 72 244 2.53e-47 160
MsG0780038823.01.T01 AT4G38660 47.826 161 78 3 4 163 79 234 1.09e-46 159
MsG0780038823.01.T01 AT4G38660 47.826 161 78 3 4 163 57 212 1.14e-46 158
MsG0780038823.01.T01 AT1G75050 47.059 170 86 3 4 171 73 240 1.56e-46 156
MsG0780038823.01.T01 AT1G20030 48.276 174 82 6 4 170 52 224 4.95e-45 154
MsG0780038823.01.T01 AT1G20030 48.276 174 82 6 4 170 69 241 7.79e-45 153
MsG0780038823.01.T01 AT1G75040 50.000 158 76 3 6 163 74 228 2.72e-44 150
MsG0780038823.01.T01 AT4G24180 45.087 173 85 5 4 169 82 251 2.59e-42 147
MsG0780038823.01.T01 AT4G24180 45.087 173 85 5 4 169 77 246 3.08e-42 147
MsG0780038823.01.T01 AT4G24180 45.509 167 81 5 4 163 82 245 4.38e-41 142
MsG0780038823.01.T01 AT4G24180 45.509 167 81 5 4 163 77 240 5.35e-41 142
MsG0780038823.01.T01 AT4G24180 45.509 167 81 5 4 163 77 240 6.33e-41 143
MsG0780038823.01.T01 AT4G24180 45.509 167 81 5 4 163 82 245 7.58e-41 143
MsG0780038823.01.T01 AT5G40020 43.373 166 93 1 6 170 79 244 1.52e-40 140
MsG0780038823.01.T01 AT4G38670 47.853 163 79 5 6 163 74 235 1.12e-39 139
MsG0780038823.01.T01 AT4G38670 47.853 163 79 5 6 163 74 235 1.12e-39 139
MsG0780038823.01.T01 AT4G38670 47.853 163 79 5 6 163 58 219 1.36e-39 138
MsG0780038823.01.T01 AT2G17860 44.304 158 80 4 20 170 89 245 9.92e-39 136
MsG0780038823.01.T01 AT4G36010 43.103 174 89 5 6 170 74 246 7.29e-37 132
MsG0780038823.01.T01 AT4G36010 43.103 174 89 5 6 170 74 246 7.29e-37 132
MsG0780038823.01.T01 AT4G36000 49.254 134 61 4 30 163 1 127 1.09e-36 129
MsG0780038823.01.T01 AT4G36000 49.254 134 61 4 30 163 1 127 1.09e-36 129
MsG0780038823.01.T01 AT2G28790 39.157 166 98 3 6 169 104 268 1.36e-35 128
MsG0780038823.01.T01 AT2G28790 39.157 166 98 3 6 169 79 243 2.30e-35 127
MsG0780038823.01.T01 AT5G38280 40.698 172 94 5 6 170 76 246 3.02e-34 130
MsG0780038823.01.T01 AT5G38280 40.698 172 94 5 6 170 76 246 3.51e-34 130
MsG0780038823.01.T01 AT4G11650 41.139 158 81 5 6 163 67 212 1.79e-30 114
MsG0780038823.01.T01 AT5G24620 44.000 125 63 2 62 179 15 139 5.57e-29 112
MsG0780038823.01.T01 AT4G18253 32.738 168 105 2 7 173 76 236 7.29e-25 99.8
MsG0780038823.01.T01 AT4G18250 35.503 169 102 5 7 173 107 270 2.44e-22 96.3
MsG0780038823.01.T01 AT1G70250 35.882 170 94 7 1 160 189 353 4.33e-22 95.9
MsG0780038823.01.T01 AT1G78550 35.714 84 54 0 168 251 91 174 1.74e-16 77.4
MsG0780038823.01.T01 AT2G24810 48.000 75 37 1 99 171 116 190 2.85e-16 75.5
MsG0780038823.01.T01 AT1G78550 36.585 82 52 0 168 249 169 250 3.36e-16 77.8
MsG0780038823.01.T01 AT3G21420 45.333 75 41 0 167 241 172 246 9.82e-16 76.3
MsG0780038823.01.T01 AT1G17020 39.535 86 50 1 168 251 169 254 3.16e-15 74.7
MsG0780038823.01.T01 AT4G25300 35.294 85 54 1 168 251 74 158 1.35e-13 69.3
MsG0780038823.01.T01 AT4G16330 42.169 83 47 1 168 250 76 157 2.51e-13 68.6
MsG0780038823.01.T01 AT4G16330 42.169 83 47 1 168 250 182 263 5.76e-13 68.2
MsG0780038823.01.T01 AT4G25300 36.145 83 52 1 170 251 170 252 7.76e-13 67.8
MsG0780038823.01.T01 AT5G24530 41.463 82 48 0 168 249 150 231 8.92e-13 67.8
MsG0780038823.01.T01 AT2G38240 37.143 105 57 2 154 249 141 245 1.13e-12 67.4
MsG0780038823.01.T01 AT5G05600 40.476 84 48 1 168 249 180 263 2.01e-12 66.2
MsG0780038823.01.T01 AT4G25310 34.940 83 53 1 168 249 165 247 2.03e-12 66.6
MsG0780038823.01.T01 AT3G11180 42.857 84 46 1 168 249 209 292 4.08e-12 65.9
MsG0780038823.01.T01 AT3G11180 42.857 84 46 1 168 249 209 292 4.21e-12 65.9
MsG0780038823.01.T01 AT3G51240 43.902 82 45 1 168 249 71 151 4.53e-12 65.1
MsG0780038823.01.T01 AT5G05600 40.476 84 48 1 168 249 180 263 4.91e-12 65.5
MsG0780038823.01.T01 AT1G49390 34.118 85 55 1 167 250 82 166 6.20e-12 64.7
MsG0780038823.01.T01 AT3G51240 43.902 82 45 1 168 249 155 235 6.35e-12 65.1
MsG0780038823.01.T01 AT3G55970 39.091 110 57 3 150 249 145 254 9.19e-12 64.3
MsG0780038823.01.T01 AT1G49390 34.118 85 55 1 167 250 161 245 1.20e-11 64.3
MsG0780038823.01.T01 AT3G55970 39.091 110 57 3 150 249 145 254 1.68e-11 63.9
MsG0780038823.01.T01 AT5G54000 36.905 84 52 1 168 250 83 166 2.48e-11 62.8
MsG0780038823.01.T01 AT5G20400 34.118 85 55 1 168 251 162 246 2.75e-11 63.2
MsG0780038823.01.T01 AT1G17010 32.941 85 56 1 168 251 170 254 3.63e-11 63.2
MsG0780038823.01.T01 AT5G54000 36.905 84 52 1 168 250 163 246 4.84e-11 62.4

Find 57 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTTCTTTGTCTATTATTA+TGG 0.163609 7:-53616101 MsG0780038823.01.T01:CDS
TAGGGCAAATAGCTTTAAAT+AGG 0.244328 7:+53620523 None:intergenic
GAATTCGAAACAAAGGAAAT+TGG 0.259256 7:-53615911 MsG0780038823.01.T01:CDS
CTGTTTCAATGAAACCTATT+GGG 0.282870 7:-53620737 MsG0780038823.01.T01:CDS
AGTTCTTTGTCTATTATTAT+GGG 0.295440 7:-53616100 MsG0780038823.01.T01:CDS
CCTGTTTCAATGAAACCTAT+TGG 0.307547 7:-53620738 MsG0780038823.01.T01:CDS
ACAACTAGAGCATCTAATAT+TGG 0.328525 7:+53615876 None:intergenic
CCAATAGGTTTCATTGAAAC+AGG 0.353160 7:+53620738 None:intergenic
ACAGTTGTTGAAATGACATT+AGG 0.363558 7:-53620819 MsG0780038823.01.T01:CDS
GCATCTAATATTGGATTAAC+TGG 0.365954 7:+53615885 None:intergenic
GCACTTGAAGTGAAGAGAAA+TGG 0.377986 7:-53620654 MsG0780038823.01.T01:CDS
TAAGCATAACTATAAGCCTT+AGG 0.387568 7:+53620504 None:intergenic
CTCTTCACTTCAAGTGCTGA+TGG 0.392487 7:+53620660 None:intergenic
AAAATGGTCAGGAAGAATTT+GGG 0.398802 7:-53620945 MsG0780038823.01.T01:CDS
TTTGTCTATTATTATGGGGT+TGG 0.402142 7:-53616095 MsG0780038823.01.T01:CDS
TATGATGTGAGTTTAGTTGA+TGG 0.412693 7:-53620771 MsG0780038823.01.T01:CDS
AACACACCTGAGCAAGTATT+AGG 0.437043 7:-53616001 MsG0780038823.01.T01:CDS
GTCATTTCAACAACTGTTGC+TGG 0.437209 7:+53620825 None:intergenic
GGAAACGGTAACTGTCTAAC+AGG 0.437391 7:-53620894 MsG0780038823.01.T01:CDS
CTAGTAGTCTTAATAGATGC+AGG 0.437595 7:-53620473 MsG0780038823.01.T01:CDS
AATTCGAAACAAAGGAAATT+GGG 0.444822 7:-53615910 MsG0780038823.01.T01:CDS
TGGTTGTAAAAGTGCTTGTT+TGG 0.446519 7:-53620622 MsG0780038823.01.T01:CDS
CACTTGAAGTGAAGAGAAAT+GGG 0.447542 7:-53620653 MsG0780038823.01.T01:CDS
ATGCAAGATGATGATGTGTC+TGG 0.451146 7:-53615938 MsG0780038823.01.T01:CDS
ATCATCATCTTGCATGAGTA+AGG 0.459685 7:+53615946 None:intergenic
TGTCTAACAGGTGATTGCTT+TGG 0.462916 7:-53620882 MsG0780038823.01.T01:CDS
AAGAGAAATGGGAAAGTAGT+TGG 0.468470 7:-53620642 MsG0780038823.01.T01:CDS
CTAATGCAGTGAAATAATAG+AGG 0.470917 7:-53616164 MsG0780038823.01.T01:intron
AAGCATAACTATAAGCCTTA+GGG 0.487638 7:+53620505 None:intergenic
TCTGCTAAATATTGTTGCAC+TGG 0.488075 7:-53620591 MsG0780038823.01.T01:CDS
CTCACATCATAGAAATGTAA+TGG 0.495706 7:+53620783 None:intergenic
ACTTTCGACAATGACGGAAA+CGG 0.501983 7:-53620909 MsG0780038823.01.T01:CDS
ATTTAAAGCTATTTGCCCTA+AGG 0.511207 7:-53620520 MsG0780038823.01.T01:CDS
GTTCTTTGTCTATTATTATG+GGG 0.521035 7:-53616099 MsG0780038823.01.T01:CDS
CTCATACCTAATACTTGCTC+AGG 0.528096 7:+53615995 None:intergenic
TCTTCACTTCAAGTGCTGAT+GGG 0.532613 7:+53620661 None:intergenic
ATCTTGCATGAGTAAGGTAA+TGG 0.540135 7:+53615952 None:intergenic
TTAATAGATGCAGGGCTCCA+AGG 0.543473 7:-53620464 MsG0780038823.01.T01:intron
GCTCAGGTGTGTTGCAAGGA+GGG 0.546433 7:+53616011 None:intergenic
TTTGGTAAACTACAATGTGC+AGG 0.556520 7:-53620864 MsG0780038823.01.T01:CDS
AAACTACAATGTGCAGGACT+AGG 0.558867 7:-53620858 MsG0780038823.01.T01:CDS
TCAAGTGAAGTGAAACGAGT+TGG 0.576458 7:-53616136 MsG0780038823.01.T01:CDS
GAAATGTAATGGTGAAGATG+AGG 0.588727 7:+53620794 None:intergenic
TGTTTCAATGAAACCTATTG+GGG 0.588913 7:-53620736 MsG0780038823.01.T01:CDS
ACTTGCTCAGGTGTGTTGCA+AGG 0.601555 7:+53616007 None:intergenic
ATGGTGCCTGTGTCAGAATG+TGG 0.608705 7:+53615971 None:intergenic
TGGGTTAGAATTCGAAACAA+AGG 0.619031 7:-53615918 MsG0780038823.01.T01:CDS
AGGAAGAATTTGGGAAGACA+AGG 0.619089 7:-53620936 MsG0780038823.01.T01:CDS
TAGTAGTCTTAATAGATGCA+GGG 0.620726 7:-53620472 MsG0780038823.01.T01:CDS
GGCTGCACTTTCGACAATGA+CGG 0.622210 7:-53620915 MsG0780038823.01.T01:CDS
TGCTCAGGTGTGTTGCAAGG+AGG 0.627122 7:+53616010 None:intergenic
TGAAGTGAAACGAGTTGGTG+AGG 0.640859 7:-53616131 MsG0780038823.01.T01:CDS
TGCAAGATGATGATGTGTCT+GGG 0.642257 7:-53615937 MsG0780038823.01.T01:CDS
ATTTCAACAACTGTTGCTGG+TGG 0.653226 7:+53620828 None:intergenic
ATGAGTCCACATTCTGACAC+AGG 0.659615 7:-53615977 MsG0780038823.01.T01:CDS
CTACAATGTGCAGGACTAGG+AGG 0.671127 7:-53620855 MsG0780038823.01.T01:CDS
GTTTCAATGAAACCTATTGG+GGG 0.722283 7:-53620735 MsG0780038823.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAATTAATAAAATCTA+TGG - Chr7:53618036-53618055 MsG0780038823.01.T01:intron 10.0%
!!! TATTTTATCATATATTAACT+TGG - Chr7:53618461-53618480 MsG0780038823.01.T01:intron 10.0%
!!! TTTTTTCTAGATTTTTTATA+AGG - Chr7:53617934-53617953 MsG0780038823.01.T01:intron 10.0%
!!! TTTTTTTTCAATGTAAAATT+AGG - Chr7:53617069-53617088 MsG0780038823.01.T01:intron 10.0%
!! AAAATTAAAATTAACCGTTA+CGG - Chr7:53618102-53618121 MsG0780038823.01.T01:intron 15.0%
!! ATTAAATATCAAATCTTAAG+AGG - Chr7:53617526-53617545 MsG0780038823.01.T01:intron 15.0%
!! TTTATAAAAAAAGTGATTGT+TGG + Chr7:53617995-53618014 None:intergenic 15.0%
!!! AAGTTTTATATTTTCTGTTT+GGG - Chr7:53617911-53617930 MsG0780038823.01.T01:intron 15.0%
!!! TAAGTTTTATATTTTCTGTT+TGG - Chr7:53617910-53617929 MsG0780038823.01.T01:intron 15.0%
!!! TTTATTATATGCAAAACTTT+TGG - Chr7:53616902-53616921 MsG0780038823.01.T01:intron 15.0%
!!! TTTTTATAAAAAAGATTCGA+TGG - Chr7:53618005-53618024 MsG0780038823.01.T01:intron 15.0%
!! AAGTTCTTTGTCTATTATTA+TGG - Chr7:53620730-53620749 MsG0780038823.01.T01:CDS 20.0%
!! AGAATTAATAAAATCTATGG+TGG - Chr7:53618039-53618058 MsG0780038823.01.T01:intron 20.0%
!! AGTTCTTTGTCTATTATTAT+GGG - Chr7:53620731-53620750 MsG0780038823.01.T01:CDS 20.0%
!! ATATACAAGGTTGTTAAAAT+CGG + Chr7:53620305-53620324 None:intergenic 20.0%
!! ATATTTACCTTACATACATA+GGG + Chr7:53617624-53617643 None:intergenic 20.0%
!! CTGATTAATGATAGAAAAAA+AGG + Chr7:53620026-53620045 None:intergenic 20.0%
!! GCAATTGAAGTTTATTAATT+TGG - Chr7:53619348-53619367 MsG0780038823.01.T01:intron 20.0%
!! TATGATAAAATTAAAGTGAC+AGG + Chr7:53618422-53618441 None:intergenic 20.0%
!! TTAATAAACTTCAATTGCTT+AGG + Chr7:53619346-53619365 None:intergenic 20.0%
!! TTCTTTCATGATTTCATTAT+CGG - Chr7:53618257-53618276 MsG0780038823.01.T01:intron 20.0%
!! TTGTAACTTTATCTTATGTA+AGG + Chr7:53618874-53618893 None:intergenic 20.0%
!! TTTAAATTAGTTGTCTCTTT+CGG + Chr7:53618801-53618820 None:intergenic 20.0%
!!! ACTAGATTTTAGAATTATGT+CGG + Chr7:53619978-53619997 None:intergenic 20.0%
!!! ATCACTTTAGTATATTGTTT+TGG + Chr7:53619398-53619417 None:intergenic 20.0%
!!! ATTTACGTATAAGTATTTTG+TGG - Chr7:53619999-53620018 MsG0780038823.01.T01:intron 20.0%
!!! GATCATTATAGTTTAAAACA+AGG - Chr7:53616588-53616607 MsG0780038823.01.T01:intron 20.0%
!!! TTTTGTATAACTAAAACATG+TGG - Chr7:53618827-53618846 MsG0780038823.01.T01:intron 20.0%
! AAGGTGAAAATACAATGTTA+AGG - Chr7:53617807-53617826 MsG0780038823.01.T01:intron 25.0%
! AATTCGAAACAAAGGAAATT+GGG - Chr7:53620921-53620940 MsG0780038823.01.T01:CDS 25.0%
! ACAATAGATGAACTATTAAC+TGG - Chr7:53617744-53617763 MsG0780038823.01.T01:intron 25.0%
! ACATGCATTGTTATATATAG+GGG - Chr7:53617390-53617409 MsG0780038823.01.T01:intron 25.0%
! ATCTACATTAGGTATATACA+AGG + Chr7:53620318-53620337 None:intergenic 25.0%
! ATTAATTTACTAGTTGCGTT+AGG + Chr7:53616812-53616831 None:intergenic 25.0%
! CAACTTATTCATCTTGAAAA+AGG - Chr7:53617436-53617455 MsG0780038823.01.T01:intron 25.0%
! CAATGTAAAATTAGGAAAGA+AGG - Chr7:53617077-53617096 MsG0780038823.01.T01:intron 25.0%
! GACATGCATTGTTATATATA+GGG - Chr7:53617389-53617408 MsG0780038823.01.T01:intron 25.0%
! GATATTTACCTTACATACAT+AGG + Chr7:53617625-53617644 None:intergenic 25.0%
! GGAATGTATAATATGTTTAG+GGG + Chr7:53619912-53619931 None:intergenic 25.0%
! GGGAATGTATAATATGTTTA+GGG + Chr7:53619913-53619932 None:intergenic 25.0%
! GTAAATATCAATAGTGTGTA+AGG - Chr7:53617636-53617655 MsG0780038823.01.T01:intron 25.0%
! GTTCTTTGTCTATTATTATG+GGG - Chr7:53620732-53620751 MsG0780038823.01.T01:CDS 25.0%
! GTTTGGTACCTTAAAAATAT+CGG + Chr7:53618601-53618620 None:intergenic 25.0%
! TAAAATTAGGAAAGAAGGAA+AGG - Chr7:53617082-53617101 MsG0780038823.01.T01:intron 25.0%
! TAAACTAATCTACATTCATG+TGG - Chr7:53618936-53618955 MsG0780038823.01.T01:intron 25.0%
! TAGCTTCTTCAAAAATAGAA+AGG + Chr7:53617300-53617319 None:intergenic 25.0%
! TATACAAGGTTGTTAAAATC+GGG + Chr7:53620304-53620323 None:intergenic 25.0%
! TCAAATGCAATCAAAAATGA+AGG + Chr7:53620240-53620259 None:intergenic 25.0%
! TCAATCAAAATCGAAAATCT+TGG + Chr7:53617866-53617885 None:intergenic 25.0%
! TCATGTGGAAATAATTGAAT+TGG - Chr7:53618951-53618970 MsG0780038823.01.T01:intron 25.0%
! TCTATATACTCATGAAGATT+TGG - Chr7:53616645-53616664 MsG0780038823.01.T01:intron 25.0%
! TGAAAATTATGTGAATGCTT+TGG + Chr7:53618743-53618762 None:intergenic 25.0%
! TGACATAGATAATATTGAGA+TGG - Chr7:53619599-53619618 MsG0780038823.01.T01:intron 25.0%
! TGCAATTAACTCAATTGATA+GGG + Chr7:53619934-53619953 None:intergenic 25.0%
! TTGCAATTAACTCAATTGAT+AGG + Chr7:53619935-53619954 None:intergenic 25.0%
!! AAAAAAGTGCATATCTATTG+TGG + Chr7:53617055-53617074 None:intergenic 25.0%
!! AACACTCATTTTCATTTGTT+TGG + Chr7:53619580-53619599 None:intergenic 25.0%
!! ATTCCATTATTTTCATTGAG+AGG - Chr7:53618130-53618149 MsG0780038823.01.T01:intron 25.0%
!! ATTTTACACAGCTTTCAAAT+GGG - Chr7:53619773-53619792 MsG0780038823.01.T01:intron 25.0%
!! GAGATTTGAGAACTTTTAAA+GGG + Chr7:53619537-53619556 None:intergenic 25.0%
!! TAACATTGTATTTTCACCTT+AGG + Chr7:53617807-53617826 None:intergenic 25.0%
!! TATATTAACTTGGATGTTGT+AGG - Chr7:53618471-53618490 MsG0780038823.01.T01:intron 25.0%
!! TGAGATTTGAGAACTTTTAA+AGG + Chr7:53619538-53619557 None:intergenic 25.0%
!! TTCCATTATTTTCATTGAGA+GGG - Chr7:53618131-53618150 MsG0780038823.01.T01:intron 25.0%
!!! AAGTTGTTTTTGTTAGTTGA+TGG + Chr7:53619470-53619489 None:intergenic 25.0%
!!! CTATTTTCCTTTGTTTTCAT+CGG - Chr7:53618677-53618696 MsG0780038823.01.T01:intron 25.0%
!!! CTTTTTCAAGATGAATAAGT+TGG + Chr7:53617438-53617457 None:intergenic 25.0%
!!! TACCTTTAAAAAAGTGTTGT+GGG + Chr7:53619161-53619180 None:intergenic 25.0%
!!! TTTAATTTTCCATCTTGAGT+GGG - Chr7:53618318-53618337 MsG0780038823.01.T01:intron 25.0%
!!! TTTTTTGTCAAGTTGTCTAA+TGG + Chr7:53617472-53617491 None:intergenic 25.0%
AAATTATGTGAATGCTTTGG+TGG + Chr7:53618740-53618759 None:intergenic 30.0%
AAGCATAACTATAAGCCTTA+GGG + Chr7:53616329-53616348 None:intergenic 30.0%
AAGTCAAACTTATACGTGAA+TGG + Chr7:53619195-53619214 None:intergenic 30.0%
AAGTTGAATAGAAACCATGT+TGG + Chr7:53618066-53618085 None:intergenic 30.0%
ACAGTTGTTGAAATGACATT+AGG - Chr7:53616012-53616031 MsG0780038823.01.T01:CDS 30.0%
ACATTTAAATGTGGAGAAGT+GGG - Chr7:53620064-53620083 MsG0780038823.01.T01:intron 30.0%
AGAAAACTCTAATATGCCTA+AGG - Chr7:53617788-53617807 MsG0780038823.01.T01:intron 30.0%
CAATTTGATCACTTTCTCAT+GGG + Chr7:53617026-53617045 None:intergenic 30.0%
CATGAGTCATAATTGATTGT+TGG + Chr7:53617137-53617156 None:intergenic 30.0%
CATGATTCACTATCTACATT+AGG + Chr7:53620329-53620348 None:intergenic 30.0%
CCACATAATCAAATTGTAAG+TGG + Chr7:53619110-53619129 None:intergenic 30.0%
CCACTTACAATTTGATTATG+TGG - Chr7:53619107-53619126 MsG0780038823.01.T01:intron 30.0%
CCTTAAAAATATCGGAGTAT+AGG + Chr7:53618593-53618612 None:intergenic 30.0%
CTAATGCAGTGAAATAATAG+AGG - Chr7:53620667-53620686 MsG0780038823.01.T01:CDS 30.0%
CTAATGTAGATAGTGAATCA+TGG - Chr7:53620327-53620346 MsG0780038823.01.T01:intron 30.0%
CTCACATCATAGAAATGTAA+TGG + Chr7:53616051-53616070 None:intergenic 30.0%
CTGTTTCAATGAAACCTATT+GGG - Chr7:53616094-53616113 MsG0780038823.01.T01:CDS 30.0%
GAATTCGAAACAAAGGAAAT+TGG - Chr7:53620920-53620939 MsG0780038823.01.T01:CDS 30.0%
GATTGTTGGATATTTCACTA+TGG + Chr7:53617123-53617142 None:intergenic 30.0%
GCAATTAACTCAATTGATAG+GGG + Chr7:53619933-53619952 None:intergenic 30.0%
GGACATGCATTGTTATATAT+AGG - Chr7:53617388-53617407 MsG0780038823.01.T01:intron 30.0%
GGGGAATGTATAATATGTTT+AGG + Chr7:53619914-53619933 None:intergenic 30.0%
GTACCAGTTAATCCAATATT+AGG - Chr7:53620943-53620962 MsG0780038823.01.T01:CDS 30.0%
GTATAATATGTTTAGGGGTT+GGG + Chr7:53619907-53619926 None:intergenic 30.0%
TAAGCATAACTATAAGCCTT+AGG + Chr7:53616330-53616349 None:intergenic 30.0%
TAATGGAATTTGATCCGTAA+CGG + Chr7:53618119-53618138 None:intergenic 30.0%
TATAATATGTTTAGGGGTTG+GGG + Chr7:53619906-53619925 None:intergenic 30.0%
TATGATGTGAGTTTAGTTGA+TGG - Chr7:53616060-53616079 MsG0780038823.01.T01:CDS 30.0%
TATGTTTCCTTCTCTTCTAT+TGG + Chr7:53620409-53620428 None:intergenic 30.0%
TCAATTTGATCACTTTCTCA+TGG + Chr7:53617027-53617046 None:intergenic 30.0%
TCCAACACAATTTAGACAAA+AGG - Chr7:53618909-53618928 MsG0780038823.01.T01:intron 30.0%
TGTATAATATGTTTAGGGGT+TGG + Chr7:53619908-53619927 None:intergenic 30.0%
TGTTTCAATGAAACCTATTG+GGG - Chr7:53616095-53616114 MsG0780038823.01.T01:CDS 30.0%
TTATTTAGCTGAAATAGCGA+GGG + Chr7:53618211-53618230 None:intergenic 30.0%
TTCTAAACCCTATGTATGTA+AGG - Chr7:53617614-53617633 MsG0780038823.01.T01:intron 30.0%
TTCTTCAATGCTAATTTCGA+TGG + Chr7:53617505-53617524 None:intergenic 30.0%
TTCTTCATTCCTCACATATT+TGG + Chr7:53619698-53619717 None:intergenic 30.0%
TTTGTCTATTATTATGGGGT+TGG - Chr7:53620736-53620755 MsG0780038823.01.T01:CDS 30.0%
! AATAGGTTAGCAAAAAGTGT+AGG + Chr7:53616294-53616313 None:intergenic 30.0%
! AGTGTAGGTTTACAAGTTTT+AGG + Chr7:53616279-53616298 None:intergenic 30.0%
! ATTTAAAGCTATTTGCCCTA+AGG - Chr7:53616311-53616330 MsG0780038823.01.T01:intron 30.0%
! GATTTTACACAGCTTTCAAA+TGG - Chr7:53619772-53619791 MsG0780038823.01.T01:intron 30.0%
! TAGGCATATTAGAGTTTTCT+TGG + Chr7:53617788-53617807 None:intergenic 30.0%
! TAGTAGTCTTAATAGATGCA+GGG - Chr7:53616359-53616378 MsG0780038823.01.T01:intron 30.0%
! TCAATAGTGTGTAAGGTTTT+TGG - Chr7:53617643-53617662 MsG0780038823.01.T01:intron 30.0%
! TCCTTTTGTCTAAATTGTGT+TGG + Chr7:53618913-53618932 None:intergenic 30.0%
!! AGTTTGATTGCAACTTGTTT+TGG + Chr7:53618659-53618678 None:intergenic 30.0%
!! CCTATACTCCGATATTTTTA+AGG - Chr7:53618590-53618609 MsG0780038823.01.T01:intron 30.0%
!! CTTTAATTTTCCATCTTGAG+TGG - Chr7:53618317-53618336 MsG0780038823.01.T01:intron 30.0%
!! GTACCTTTAAAAAAGTGTTG+TGG + Chr7:53619162-53619181 None:intergenic 30.0%
!! TAGGGCAAATAGCTTTAAAT+AGG + Chr7:53616311-53616330 None:intergenic 30.0%
!!! AAAACTTTTGGTTTGAGTTG+TGG - Chr7:53616914-53616933 MsG0780038823.01.T01:intron 30.0%
!!! GGACGCATTTTTTTTTTCTT+TGG - Chr7:53618984-53619003 MsG0780038823.01.T01:intron 30.0%
!!! TACCCACAACACTTTTTTAA+AGG - Chr7:53619156-53619175 MsG0780038823.01.T01:intron 30.0%
AAAACCTTAACTCCTCTGAT+TGG + Chr7:53617836-53617855 None:intergenic 35.0%
AAGACTCATACAGAGAATGA+AGG - Chr7:53620358-53620377 MsG0780038823.01.T01:intron 35.0%
AAGAGAAATGGGAAAGTAGT+TGG - Chr7:53616189-53616208 MsG0780038823.01.T01:intron 35.0%
AAGTTCCTACCAAATATGTG+AGG - Chr7:53619686-53619705 MsG0780038823.01.T01:intron 35.0%
AATGGTGAAGATGAATCCTT+TGG - Chr7:53619663-53619682 MsG0780038823.01.T01:intron 35.0%
ACATATTTATGACCCTTCAC+AGG + Chr7:53618623-53618642 None:intergenic 35.0%
AGAGCTCTCACATTTAAATG+TGG - Chr7:53620055-53620074 MsG0780038823.01.T01:intron 35.0%
AGCTGTGTAAAATCAATGAC+AGG + Chr7:53619766-53619785 None:intergenic 35.0%
AGGCTTCTCTTGAAAATTGT+GGG - Chr7:53619030-53619049 MsG0780038823.01.T01:intron 35.0%
AGTGGAGTACAAATAGTTGT+TGG + Chr7:53619092-53619111 None:intergenic 35.0%
ATCATCATCTTGCATGAGTA+AGG + Chr7:53620888-53620907 None:intergenic 35.0%
ATCTTGCATGAGTAAGGTAA+TGG + Chr7:53620882-53620901 None:intergenic 35.0%
ATGATGAAGATGAGATCCAA+TGG - Chr7:53617960-53617979 MsG0780038823.01.T01:intron 35.0%
ATTACCATAGCACGTGAAAA+AGG - Chr7:53619219-53619238 MsG0780038823.01.T01:intron 35.0%
ATTGTTATATATAGGGGTCG+GGG - Chr7:53617396-53617415 MsG0780038823.01.T01:intron 35.0%
CAAACTTCCAATAGAAGAGA+AGG - Chr7:53620399-53620418 MsG0780038823.01.T01:intron 35.0%
CAAATTAAACCCACTCAAGA+TGG + Chr7:53618330-53618349 None:intergenic 35.0%
CACATTTAAATGTGGAGAAG+TGG - Chr7:53620063-53620082 MsG0780038823.01.T01:intron 35.0%
CACCCTCTCAATGAAAATAA+TGG + Chr7:53618136-53618155 None:intergenic 35.0%
CACTTGAAGTGAAGAGAAAT+GGG - Chr7:53616178-53616197 MsG0780038823.01.T01:intron 35.0%
CAGAAAGTGATAACATACCT+TGG + Chr7:53616387-53616406 None:intergenic 35.0%
CATTGTTATATATAGGGGTC+GGG - Chr7:53617395-53617414 MsG0780038823.01.T01:intron 35.0%
CATTTAAATGTGGAGAAGTG+GGG - Chr7:53620065-53620084 MsG0780038823.01.T01:intron 35.0%
CCAATAGGTTTCATTGAAAC+AGG + Chr7:53616096-53616115 None:intergenic 35.0%
CCATACACACTCTTATAAAG+GGG - Chr7:53617194-53617213 MsG0780038823.01.T01:intron 35.0%
CCCATACACACTCTTATAAA+GGG - Chr7:53617193-53617212 MsG0780038823.01.T01:intron 35.0%
CCTGTTTCAATGAAACCTAT+TGG - Chr7:53616093-53616112 MsG0780038823.01.T01:CDS 35.0%
CTTAAACTTTGATGAGACCT+AGG - Chr7:53619010-53619029 MsG0780038823.01.T01:intron 35.0%
CTTATTTAGCTGAAATAGCG+AGG + Chr7:53618212-53618231 None:intergenic 35.0%
CTTCACCATTTCTTGAACAT+TGG + Chr7:53619653-53619672 None:intergenic 35.0%
CTTTGCCAATGTTCAAGAAA+TGG - Chr7:53619645-53619664 MsG0780038823.01.T01:intron 35.0%
GAAATGTAATGGTGAAGATG+AGG + Chr7:53616040-53616059 None:intergenic 35.0%
GATAGCAAAACCACTAAGAA+GGG + Chr7:53617174-53617193 None:intergenic 35.0%
GCATTGTTATATATAGGGGT+CGG - Chr7:53617394-53617413 MsG0780038823.01.T01:intron 35.0%
GGGGGAAAAATATGTTGAAA+AGG + Chr7:53618190-53618209 None:intergenic 35.0%
GTTTCAATGAAACCTATTGG+GGG - Chr7:53616096-53616115 MsG0780038823.01.T01:CDS 35.0%
TAGGCTTCTCTTGAAAATTG+TGG - Chr7:53619029-53619048 MsG0780038823.01.T01:intron 35.0%
TATTCAAGTGCACAAGAGTT+TGG + Chr7:53617560-53617579 None:intergenic 35.0%
TATTTAGCTGAAATAGCGAG+GGG + Chr7:53618210-53618229 None:intergenic 35.0%
TATTTGGTAGGAACTTCCAA+AGG + Chr7:53619682-53619701 None:intergenic 35.0%
TCATTCCTCACATATTTGGT+AGG + Chr7:53619694-53619713 None:intergenic 35.0%
TCCCATACACACTCTTATAA+AGG - Chr7:53617192-53617211 MsG0780038823.01.T01:intron 35.0%
TCTGCTAAATATTGTTGCAC+TGG - Chr7:53616240-53616259 MsG0780038823.01.T01:intron 35.0%
TGTGAGGAATGAAGAAGAAA+TGG - Chr7:53619702-53619721 MsG0780038823.01.T01:intron 35.0%
TTCAATTGCTTAGGTAAGCT+GGG + Chr7:53619337-53619356 None:intergenic 35.0%
TTCATTTATCCCTATCGTAC+AGG - Chr7:53620519-53620538 MsG0780038823.01.T01:CDS 35.0%
TTGGATCTATCGAACGTAAT+TGG + Chr7:53619379-53619398 None:intergenic 35.0%
TTTCTTGAACATTGGCAAAG+AGG + Chr7:53619645-53619664 None:intergenic 35.0%
TTTGGTAAACTACAATGTGC+AGG - Chr7:53615967-53615986 MsG0780038823.01.T01:CDS 35.0%
! AAGTGATTTGATCGTTGACT+AGG - Chr7:53619411-53619430 MsG0780038823.01.T01:intron 35.0%
! AATCAGAGGAGTTAAGGTTT+TGG - Chr7:53617835-53617854 MsG0780038823.01.T01:intron 35.0%
! AATTGAATTGGCTAGCTAGA+AGG - Chr7:53618963-53618982 MsG0780038823.01.T01:intron 35.0%
! AGATGAATAAGTTGGATGTC+TGG + Chr7:53617430-53617449 None:intergenic 35.0%
! ATGAATAAGTTGGATGTCTG+GGG + Chr7:53617428-53617447 None:intergenic 35.0%
! CATCTTGAGTGGGTTTAATT+TGG - Chr7:53618328-53618347 MsG0780038823.01.T01:intron 35.0%
! CCCTTTATAAGAGTGTGTAT+GGG + Chr7:53617196-53617215 None:intergenic 35.0%
! CTAGTAGTCTTAATAGATGC+AGG - Chr7:53616358-53616377 MsG0780038823.01.T01:intron 35.0%
! GATGAATAAGTTGGATGTCT+GGG + Chr7:53617429-53617448 None:intergenic 35.0%
! GGAATCTCTAAAGAAAGTTG+AGG + Chr7:53619745-53619764 None:intergenic 35.0%
! GGCTATCTTTGATTAGTTGA+CGG - Chr7:53619128-53619147 MsG0780038823.01.T01:intron 35.0%
! TAAAATCGGGATTTTGCTTC+AGG + Chr7:53620291-53620310 None:intergenic 35.0%
! TGGGTTAGAATTCGAAACAA+AGG - Chr7:53620913-53620932 MsG0780038823.01.T01:CDS 35.0%
! TTATTTTCATTGAGAGGGTG+TGG - Chr7:53618136-53618155 MsG0780038823.01.T01:intron 35.0%
!! ACAATTTTCAAGAGAAGCCT+AGG + Chr7:53619030-53619049 None:intergenic 35.0%
!! TGGTTGTAAAAGTGCTTGTT+TGG - Chr7:53616209-53616228 MsG0780038823.01.T01:intron 35.0%
!! TGTGGTATTGGGTCAATTTT+TGG - Chr7:53618154-53618173 MsG0780038823.01.T01:intron 35.0%
AAACTACAATGTGCAGGACT+AGG - Chr7:53615973-53615992 MsG0780038823.01.T01:CDS 40.0%
AACACACCTGAGCAAGTATT+AGG - Chr7:53620830-53620849 MsG0780038823.01.T01:CDS 40.0%
AACGCATACTTGAATCCATG+AGG + Chr7:53620568-53620587 None:intergenic 40.0%
AACGCGGAAAATTATGGTTG+AGG + Chr7:53619861-53619880 None:intergenic 40.0%
AATGCTCTCAAACGACATAC+AGG - Chr7:53620432-53620451 MsG0780038823.01.T01:intron 40.0%
AGAAGCTCAATAGATGCAGT+AGG - Chr7:53616965-53616984 MsG0780038823.01.T01:intron 40.0%
AGGAAGAATTTGGGAAGACA+AGG - Chr7:53615895-53615914 MsG0780038823.01.T01:CDS 40.0%
ATGTTAAGGTGACCAATCAG+AGG - Chr7:53617821-53617840 MsG0780038823.01.T01:intron 40.0%
ATTTAGCTGAAATAGCGAGG+GGG + Chr7:53618209-53618228 None:intergenic 40.0%
ATTTCAACAACTGTTGCTGG+TGG + Chr7:53616006-53616025 None:intergenic 40.0%
CAGCAGCTTCAACTTCATTT+CGG + Chr7:53616440-53616459 None:intergenic 40.0%
CTCATACCTAATACTTGCTC+AGG + Chr7:53620839-53620858 None:intergenic 40.0%
CTGATGTCCGATGAAAACAA+AGG + Chr7:53618687-53618706 None:intergenic 40.0%
CTTCAATTGCTTAGGTAAGC+TGG + Chr7:53619338-53619357 None:intergenic 40.0%
GAAACTTGAGATTGCATGCA+AGG - Chr7:53619812-53619831 MsG0780038823.01.T01:intron 40.0%
GCACTTGAAGTGAAGAGAAA+TGG - Chr7:53616177-53616196 MsG0780038823.01.T01:intron 40.0%
GGATAGCAAAACCACTAAGA+AGG + Chr7:53617175-53617194 None:intergenic 40.0%
GTCATTTCAACAACTGTTGC+TGG + Chr7:53616009-53616028 None:intergenic 40.0%
TACTGCATCTATTGAGCTTC+TGG + Chr7:53616966-53616985 None:intergenic 40.0%
TCAAACGACATACAGGCTAT+GGG - Chr7:53620439-53620458 MsG0780038823.01.T01:intron 40.0%
TCAAGTGAAGTGAAACGAGT+TGG - Chr7:53620695-53620714 MsG0780038823.01.T01:CDS 40.0%
TCCACTAACGCGGAAAATTA+TGG + Chr7:53619867-53619886 None:intergenic 40.0%
TCTAAGAAGTCCCTTCTTAG+TGG - Chr7:53617161-53617180 MsG0780038823.01.T01:intron 40.0%
TCTCACTCAACAAGTTCGTT+TGG + Chr7:53616734-53616753 None:intergenic 40.0%
TGACGAGCAAACACTTGATT+GGG - Chr7:53620479-53620498 MsG0780038823.01.T01:CDS 40.0%
TGTCTAACAGGTGATTGCTT+TGG - Chr7:53615949-53615968 MsG0780038823.01.T01:CDS 40.0%
TTGTTGGACATGAAGTCCAT+TGG + Chr7:53617979-53617998 None:intergenic 40.0%
TTTATGACCCTTCACAGGTT+TGG + Chr7:53618618-53618637 None:intergenic 40.0%
! ACCATAATTTTCCGCGTTAG+TGG - Chr7:53619863-53619882 MsG0780038823.01.T01:intron 40.0%
! ACTTTCGACAATGACGGAAA+CGG - Chr7:53615922-53615941 MsG0780038823.01.T01:CDS 40.0%
! ATGCAAGATGATGATGTGTC+TGG - Chr7:53620893-53620912 MsG0780038823.01.T01:CDS 40.0%
! CCCCTTTATAAGAGTGTGTA+TGG + Chr7:53617197-53617216 None:intergenic 40.0%
! GTTTTCTTGGAGCTTCTCAT+AGG + Chr7:53617775-53617794 None:intergenic 40.0%
! TAAGGTACCAAACCTGTGAA+GGG - Chr7:53618608-53618627 MsG0780038823.01.T01:intron 40.0%
! TGCAAGATGATGATGTGTCT+GGG - Chr7:53620894-53620913 MsG0780038823.01.T01:CDS 40.0%
! TTAAGGTACCAAACCTGTGA+AGG - Chr7:53618607-53618626 MsG0780038823.01.T01:intron 40.0%
!! AAATCTATGGTGGACCAACA+TGG - Chr7:53618049-53618068 MsG0780038823.01.T01:intron 40.0%
!! ATTTTGGCCAAAACACCTCA+TGG - Chr7:53620550-53620569 MsG0780038823.01.T01:CDS 40.0%
!! CTTGAATCCATGAGGTGTTT+TGG + Chr7:53620560-53620579 None:intergenic 40.0%
!! TCTTCACTTCAAGTGCTGAT+GGG + Chr7:53616173-53616192 None:intergenic 40.0%
!!! GGATTTTGCTTCAGGTTGAA+AGG + Chr7:53620283-53620302 None:intergenic 40.0%
!!! TGAGGTGTTTTGGCCAAAAT+CGG + Chr7:53620550-53620569 None:intergenic 40.0%
AAACCTATTGGGGGTGGAAT+TGG - Chr7:53616105-53616124 MsG0780038823.01.T01:CDS 45.0%
AAGTCTGCAAAATGCATCCC+CGG + Chr7:53620094-53620113 None:intergenic 45.0%
ACAGAGAATGAAGGATGCAG+TGG - Chr7:53620367-53620386 MsG0780038823.01.T01:intron 45.0%
ATGAGTCCACATTCTGACAC+AGG - Chr7:53620854-53620873 MsG0780038823.01.T01:CDS 45.0%
CTCAAACGACATACAGGCTA+TGG - Chr7:53620438-53620457 MsG0780038823.01.T01:intron 45.0%
CTGACGAGCAAACACTTGAT+TGG - Chr7:53620478-53620497 MsG0780038823.01.T01:CDS 45.0%
GACGAGCAAACACTTGATTG+GGG - Chr7:53620480-53620499 MsG0780038823.01.T01:CDS 45.0%
GGAAACGGTAACTGTCTAAC+AGG - Chr7:53615937-53615956 MsG0780038823.01.T01:CDS 45.0%
GTGACCAATCAGAGGAGTTA+AGG - Chr7:53617829-53617848 MsG0780038823.01.T01:intron 45.0%
TCAATGAAACCTATTGGGGG+TGG - Chr7:53616099-53616118 MsG0780038823.01.T01:CDS 45.0%
TCATTTCGGCATCCGAATTC+CGG + Chr7:53616426-53616445 None:intergenic 45.0%
TGAGATTGCATGCAAGGAGT+GGG - Chr7:53619818-53619837 MsG0780038823.01.T01:intron 45.0%
TGAGCATAGCTCAGTTTGCA+GGG - Chr7:53617367-53617386 MsG0780038823.01.T01:intron 45.0%
TGATCACTTTCTCATGGGAG+AGG + Chr7:53617021-53617040 None:intergenic 45.0%
TGCAAACTGAGCTATGCTCA+CGG + Chr7:53617367-53617386 None:intergenic 45.0%
TTAATAGATGCAGGGCTCCA+AGG - Chr7:53616367-53616386 MsG0780038823.01.T01:intron 45.0%
TTGAGATTGCATGCAAGGAG+TGG - Chr7:53619817-53619836 MsG0780038823.01.T01:intron 45.0%
TTTAGCTGAAATAGCGAGGG+GGG + Chr7:53618208-53618227 None:intergenic 45.0%
! CATTGAGAGGGTGTGGTATT+GGG - Chr7:53618143-53618162 MsG0780038823.01.T01:intron 45.0%
! TCATTGAGAGGGTGTGGTAT+TGG - Chr7:53618142-53618161 MsG0780038823.01.T01:intron 45.0%
! TGGCAAAGAGGAGCATAAGT+GGG + Chr7:53619633-53619652 None:intergenic 45.0%
! TTGGCAAAGAGGAGCATAAG+TGG + Chr7:53619634-53619653 None:intergenic 45.0%
!! CTCTTCACTTCAAGTGCTGA+TGG + Chr7:53616174-53616193 None:intergenic 45.0%
!! TGAAGTGAAACGAGTTGGTG+AGG - Chr7:53620700-53620719 MsG0780038823.01.T01:CDS 45.0%
!!! ATTTAATATTATTTTTGTTT+TGG - Chr7:53620155-53620174 MsG0780038823.01.T01:intron 5.0%
ACTTGCTCAGGTGTGTTGCA+AGG + Chr7:53620827-53620846 None:intergenic 50.0%
ATCGGAGGTTCCTGTACGAT+AGG + Chr7:53620532-53620551 None:intergenic 50.0%
ATGGTGCCTGTGTCAGAATG+TGG + Chr7:53620863-53620882 None:intergenic 50.0%
ATTGGGGGTGGAATTGGTTG+TGG - Chr7:53616111-53616130 MsG0780038823.01.T01:CDS 50.0%
CAAACTGAGCTATGCTCACG+GGG + Chr7:53617365-53617384 None:intergenic 50.0%
CAACCAATTCCACCCCCAAT+AGG + Chr7:53616111-53616130 None:intergenic 50.0%
CAAGGAGTGGGGTTTCTTTC+AGG - Chr7:53619830-53619849 MsG0780038823.01.T01:intron 50.0%
CTACAATGTGCAGGACTAGG+AGG - Chr7:53615976-53615995 MsG0780038823.01.T01:CDS 50.0%
GAGATTGCATGCAAGGAGTG+GGG - Chr7:53619819-53619838 MsG0780038823.01.T01:intron 50.0%
GCAAACTGAGCTATGCTCAC+GGG + Chr7:53617366-53617385 None:intergenic 50.0%
GGCTGCACTTTCGACAATGA+CGG - Chr7:53615916-53615935 MsG0780038823.01.T01:CDS 50.0%
GTGAGCATAGCTCAGTTTGC+AGG - Chr7:53617366-53617385 MsG0780038823.01.T01:intron 50.0%
TCGGAGGTTCCTGTACGATA+GGG + Chr7:53620531-53620550 None:intergenic 50.0%
! CGTACAGGAACCTCCGATTT+TGG - Chr7:53620534-53620553 MsG0780038823.01.T01:CDS 50.0%
!! GACGCCTTTTTCACGTGCTA+TGG + Chr7:53619226-53619245 None:intergenic 50.0%
!!! GGTGTTTTGGCCAAAATCGG+AGG + Chr7:53620547-53620566 None:intergenic 50.0%
ACGACATACAGGCTATGGGC+AGG - Chr7:53620443-53620462 MsG0780038823.01.T01:intron 55.0%
CATCCGAATTCCGGTCACTG+CGG + Chr7:53616417-53616436 None:intergenic 55.0%
GCTCAGGTGTGTTGCAAGGA+GGG + Chr7:53620823-53620842 None:intergenic 55.0%
TGCTCAGGTGTGTTGCAAGG+AGG + Chr7:53620824-53620843 None:intergenic 55.0%
! ATGTGGAGAAGTGGGGTGTC+CGG - Chr7:53620072-53620091 MsG0780038823.01.T01:intron 55.0%
! TGTGGAGAAGTGGGGTGTCC+GGG - Chr7:53620073-53620092 MsG0780038823.01.T01:intron 60.0%
AATTCCGGTCACTGCGGCGG+AGG + Chr7:53616411-53616430 None:intergenic 65.0%
CCGAATTCCGGTCACTGCGG+CGG + Chr7:53616414-53616433 None:intergenic 65.0%
CCGCCGCAGTGACCGGAATT+CGG - Chr7:53616411-53616430 MsG0780038823.01.T01:intron 65.0%
! GTGGAGAAGTGGGGTGTCCG+GGG - Chr7:53620074-53620093 MsG0780038823.01.T01:intron 65.0%
CTGTCCTCCGCCGCAGTGAC+CGG - Chr7:53616404-53616423 MsG0780038823.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 53615889 53620964 53615889 ID=MsG0780038823.01;Name=MsG0780038823.01
Chr7 mRNA 53615889 53620964 53615889 ID=MsG0780038823.01.T01;Parent=MsG0780038823.01;Name=MsG0780038823.01.T01;_AED=0.22;_eAED=0.22;_QI=0|0.5|0.66|1|0.5|0.33|3|0|262
Chr7 exon 53615889 53616177 53615889 ID=MsG0780038823.01.T01:exon:10051;Parent=MsG0780038823.01.T01
Chr7 exon 53620465 53620964 53620465 ID=MsG0780038823.01.T01:exon:10050;Parent=MsG0780038823.01.T01
Chr7 CDS 53620465 53620964 53620465 ID=MsG0780038823.01.T01:cds;Parent=MsG0780038823.01.T01
Chr7 CDS 53615889 53616177 53615889 ID=MsG0780038823.01.T01:cds;Parent=MsG0780038823.01.T01
Gene Sequence

>MsG0780038823.01.T01

ATGGTCAGGAAGAATTTGGGAAGACAAGGCTGCACTTTCGACAATGACGGAAACGGTAACTGTCTAACAGGTGATTGCTTTGGTAAACTACAATGTGCAGGACTAGGAGGAGTTCCACCAGCAACAGTTGTTGAAATGACATTAGGATCCTCATCTTCACCATTACATTTCTATGATGTGAGTTTAGTTGATGGTTTCAATTTACCTGTTTCAATGAAACCTATTGGGGGTGGAATTGGTTGTGGAATAGCTTCTTGTGAAGTTGATTTGAATGTTTGTTGCCCATCAGCACTTGAAGTGAAGAGAAATGGGAAAGTAGTTGGTTGTAAAAGTGCTTGTTTGGCTATGCAATCTGCTAAATATTGTTGCACTGGAGATTATTCTGATCCTAAAACTTGTAAACCTACACTTTTTGCTAACCTATTTAAAGCTATTTGCCCTAAGGCTTATAGTTATGCTTATGATGATACTAGTAGTCTTAATAGATGCAGGGCTCCAAGTGAAATAATAGAGGCATATTCAAGTGAAGTGAAACGAGTTGGTGAGGAACTTCTAAGTTCTTTGTCTATTATTATGGGGTTGGAGAAGCATGCTCTTGTTGAACTGCATAAAGAATTATTTCAAGCATTACGTGTGAACTATTACCCTCCTTGCAACACACCTGAGCAAGTATTAGGTATGAGTCCACATTCTGACACAGGCACCATTACCTTACTCATGCAAGATGATGATGTGTCTGGGTTAGAATTCGAAACAAAGGAAATTGGGTACCAGTTAATCCAATATTAG
Protein sequence

>MsG0780038823.01.T01

MVRKNLGRQGCTFDNDGNGNCLTGDCFGKLQCAGLGGVPPATVVEMTLGSSSSPLHFYDVSLVDGFNLPVSMKPIGGGIGCGIASCEVDLNVCCPSALEVKRNGKVVGCKSACLAMQSAKYCCTGDYSDPKTCKPTLFANLFKAICPKAYSYAYDDTSSLNRCRAPSEIIEAYSSEVKRVGEELLSSLSIIMGLEKHALVELHKELFQALRVNYYPPCNTPEQVLGMSPHSDTGTITLLMQDDDVSGLEFETKEIGYQLIQY*