AlfalfaGEDB | MsG0780038823.01

M. sativa cultivar ZhongmuNo.1 / MsG0780038823.01

KEGG: -
GO: GO:0016491 GO:0055114
PFAM: PF00314 PF03171

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038823.01.T01	XP_013448907.1	96.364	165	6	0	6	170	74	238	1.35E-111	331

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038823.01.T01	Q53MB8	65.854	164	55	1	8	170	82	245	3.06E-68	214

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038823.01.T01	A0A072TZL3	96.364	165	6	0	6	170	74	238	6.46e-112	331

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048652.01	MsG0780038823.01	0.811225	7.785392e-51	4.792263e-48
MsG0080048948.01	MsG0780038823.01	-0.802765	4.803082e-49	2.372573e-46
MsG0180004559.01	MsG0780038823.01	0.824660	7.154749e-54	6.378993e-51
MsG0280010296.01	MsG0780038823.01	0.802266	6.087808e-49	2.969084e-46
MsG0380014754.01	MsG0780038823.01	0.830219	3.322706e-55	3.478722e-52
MsG0380016008.01	MsG0780038823.01	0.809918	1.491845e-50	8.871124e-48
MsG0380017231.01	MsG0780038823.01	0.869707	2.531074e-66	9.590099e-63
MsG0480019588.01	MsG0780038823.01	0.805105	1.567609e-49	8.222786e-47
MsG0480020263.01	MsG0780038823.01	0.800386	1.476763e-48	6.867238e-46
MsG0480023195.01	MsG0780038823.01	0.815921	7.213811e-52	5.039632e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038823.01.T01	MTR_7g062610	96.364	165	6	0	6	170	74	238	1.64e-115	331
MsG0780038823.01.T01	MTR_3g068015	71.429	161	45	1	6	165	79	239	2.65e-82	247
MsG0780038823.01.T01	MTR_8g107140	53.846	169	73	2	4	170	76	241	6.76e-59	187
MsG0780038823.01.T01	MTR_8g036215	52.663	169	77	2	4	171	69	235	3.42e-56	180
MsG0780038823.01.T01	MTR_6g079580	51.497	167	76	2	6	170	73	236	4.70e-55	177
MsG0780038823.01.T01	MTR_3g111620	51.250	160	76	2	6	164	78	236	1.94e-50	166
MsG0780038823.01.T01	MTR_5g059200	45.402	174	89	3	6	179	77	244	1.36e-49	165
MsG0780038823.01.T01	MTR_1g021945	51.572	159	75	2	8	165	79	236	4.08e-48	160
MsG0780038823.01.T01	MTR_7g062600	89.655	87	9	0	167	253	164	250	6.07e-47	160
MsG0780038823.01.T01	MTR_8g075550	45.856	181	89	3	6	178	79	258	1.19e-46	158

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038823.01.T01	AT5G02140	80.723	166	31	1	6	170	72	237	1.02e-87	263
MsG0780038823.01.T01	AT5G02140	80.723	166	31	1	6	170	72	237	1.33e-87	260
MsG0780038823.01.T01	AT1G18250	55.090	167	70	3	6	170	72	235	7.65e-57	182
MsG0780038823.01.T01	AT1G18250	55.090	167	70	3	6	170	73	236	8.32e-57	182
MsG0780038823.01.T01	AT1G73620	51.479	169	77	3	4	170	91	256	2.74e-54	176
MsG0780038823.01.T01	AT1G75030	50.296	169	81	2	4	170	72	239	3.46e-53	173
MsG0780038823.01.T01	AT5G24620	47.514	181	88	2	6	179	76	256	1.17e-52	176
MsG0780038823.01.T01	AT5G24620	47.514	181	88	2	6	179	131	311	1.94e-52	177
MsG0780038823.01.T01	AT5G24620	47.514	181	88	2	6	179	152	332	3.39e-52	177
MsG0780038823.01.T01	AT1G77700	48.571	175	85	2	6	180	109	278	3.27e-50	167

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Find 57 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGTCAGGAAGAATTT+GGG	0.398802	7:-53620945	MsG0780038823.01.T01:CDS
AAACTACAATGTGCAGGACT+AGG	0.558867	7:-53620858	MsG0780038823.01.T01:CDS
AACACACCTGAGCAAGTATT+AGG	0.437043	7:-53616001	MsG0780038823.01.T01:CDS
AAGAGAAATGGGAAAGTAGT+TGG	0.468470	7:-53620642	MsG0780038823.01.T01:CDS
AAGCATAACTATAAGCCTTA+GGG	0.487638	7:+53620505	None:intergenic
AAGTTCTTTGTCTATTATTA+TGG	0.163609	7:-53616101	MsG0780038823.01.T01:CDS
AATTCGAAACAAAGGAAATT+GGG	0.444822	7:-53615910	MsG0780038823.01.T01:CDS
ACAACTAGAGCATCTAATAT+TGG	0.328525	7:+53615876	None:intergenic
ACAGTTGTTGAAATGACATT+AGG	0.363558	7:-53620819	MsG0780038823.01.T01:CDS
ACTTGCTCAGGTGTGTTGCA+AGG	0.601555	7:+53616007	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTATGTGAATGCTTTGG+TGG	+	Chr7:53618740-53618759	None:intergenic	30.0%
AAGCATAACTATAAGCCTTA+GGG	+	Chr7:53616329-53616348	None:intergenic	30.0%
AAGTCAAACTTATACGTGAA+TGG	+	Chr7:53619195-53619214	None:intergenic	30.0%
AAGTTGAATAGAAACCATGT+TGG	+	Chr7:53618066-53618085	None:intergenic	30.0%
ACAGTTGTTGAAATGACATT+AGG	-	Chr7:53616012-53616031	MsG0780038823.01.T01:CDS	30.0%
ACATTTAAATGTGGAGAAGT+GGG	-	Chr7:53620064-53620083	MsG0780038823.01.T01:intron	30.0%
AGAAAACTCTAATATGCCTA+AGG	-	Chr7:53617788-53617807	MsG0780038823.01.T01:intron	30.0%
CAATTTGATCACTTTCTCAT+GGG	+	Chr7:53617026-53617045	None:intergenic	30.0%
CATGAGTCATAATTGATTGT+TGG	+	Chr7:53617137-53617156	None:intergenic	30.0%
CATGATTCACTATCTACATT+AGG	+	Chr7:53620329-53620348	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	53615889	53620964	53615889	ID=MsG0780038823.01;Name=MsG0780038823.01
Chr7	mRNA	53615889	53620964	53615889	ID=MsG0780038823.01.T01;Parent=MsG0780038823.01;Name=MsG0780038823.01.T01;_AED=0.22;_eAED=0.22;_QI=0\|0.5\|0.66\|1\|0.5\|0.33\|3\|0\|262
Chr7	exon	53615889	53616177	53615889	ID=MsG0780038823.01.T01:exon:10051;Parent=MsG0780038823.01.T01
Chr7	exon	53620465	53620964	53620465	ID=MsG0780038823.01.T01:exon:10050;Parent=MsG0780038823.01.T01
Chr7	CDS	53620465	53620964	53620465	ID=MsG0780038823.01.T01:cds;Parent=MsG0780038823.01.T01
Chr7	CDS	53615889	53616177	53615889	ID=MsG0780038823.01.T01:cds;Parent=MsG0780038823.01.T01

Gene Sequence

>MsG0780038823.01.T01

ATGGTCAGGAAGAATTTGGGAAGACAAGGCTGCACTTTCGACAATGACGGAAACGGTAACTGTCTAACAGGTGATTGCTTTGGTAAACTACAATGTGCAGGACTAGGAGGAGTTCCACCAGCAACAGTTGTTGAAATGACATTAGGATCCTCATCTTCACCATTACATTTCTATGATGTGAGTTTAGTTGATGGTTTCAATTTACCTGTTTCAATGAAACCTATTGGGGGTGGAATTGGTTGTGGAATAGCTTCTTGTGAAGTTGATTTGAATGTTTGTTGCCCATCAGCACTTGAAGTGAAGAGAAATGGGAAAGTAGTTGGTTGTAAAAGTGCTTGTTTGGCTATGCAATCTGCTAAATATTGTTGCACTGGAGATTATTCTGATCCTAAAACTTGTAAACCTACACTTTTTGCTAACCTATTTAAAGCTATTTGCCCTAAGGCTTATAGTTATGCTTATGATGATACTAGTAGTCTTAATAGATGCAGGGCTCCAAGTGAAATAATAGAGGCATATTCAAGTGAAGTGAAACGAGTTGGTGAGGAACTTCTAAGTTCTTTGTCTATTATTATGGGGTTGGAGAAGCATGCTCTTGTTGAACTGCATAAAGAATTATTTCAAGCATTACGTGTGAACTATTACCCTCCTTGCAACACACCTGAGCAAGTATTAGGTATGAGTCCACATTCTGACACAGGCACCATTACCTTACTCATGCAAGATGATGATGTGTCTGGGTTAGAATTCGAAACAAAGGAAATTGGGTACCAGTTAATCCAATATTAG

Protein sequence

>MsG0780038823.01.T01

MVRKNLGRQGCTFDNDGNGNCLTGDCFGKLQCAGLGGVPPATVVEMTLGSSSSPLHFYDVSLVDGFNLPVSMKPIGGGIGCGIASCEVDLNVCCPSALEVKRNGKVVGCKSACLAMQSAKYCCTGDYSDPKTCKPTLFANLFKAICPKAYSYAYDDTSSLNRCRAPSEIIEAYSSEVKRVGEELLSSLSIIMGLEKHALVELHKELFQALRVNYYPPCNTPEQVLGMSPHSDTGTITLLMQDDDVSGLEFETKEIGYQLIQY*