AlfalfaGEDB | MsG0380016008.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016008.01

KEGG: -
GO: GO:0008270
PFAM: PF12906

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016008.01.T01	XP_013461156.1	93.908	476	26	1	1	473	1	476	0	875

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016008.01.T01	A0A072VAG8	93.908	476	26	1	1	473	1	476	0.0	875

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048692.01	MsG0380016008.01	-0.823101	1.659843e-53	1.415732e-50
MsG0080048694.01	MsG0380016008.01	-0.803944	2.736730e-49	1.393375e-46
MsG0080048695.01	MsG0380016008.01	-0.802889	4.528264e-49	2.243825e-46
MsG0080048800.01	MsG0380016008.01	-0.801066	1.072788e-48	5.075619e-46
MsG0080049076.01	MsG0380016008.01	-0.829398	5.264037e-55	5.381555e-52
MsG0180000373.01	MsG0380016008.01	0.801657	8.120439e-49	3.899397e-46
MsG0180000659.01	MsG0380016008.01	0.835022	2.137133e-56	2.580859e-53
MsG0180001104.01	MsG0380016008.01	0.807372	5.219870e-50	2.902353e-47
MsG0180001234.01	MsG0380016008.01	0.804896	1.733162e-49	9.043532e-47
MsG0180001925.01	MsG0380016008.01	-0.815993	6.952212e-52	4.866689e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016008.01.T01	MTR_3g081490	93.908	476	26	1	1	473	1	476	0.0	875
MsG0380016008.01.T01	MTR_3g081490	93.122	378	23	1	1	375	1	378	0.0	709
MsG0380016008.01.T01	MTR_3g081490	91.429	385	30	1	1	382	1	385	0.0	709
MsG0380016008.01.T01	MTR_4g059540	43.721	430	213	10	45	465	95	504	6.72e-101	312
MsG0380016008.01.T01	MTR_4g059540	43.733	375	186	9	45	414	95	449	2.91e-84	267
MsG0380016008.01.T01	MTR_1g064710	38.313	415	215	12	67	465	97	486	1.09e-83	267
MsG0380016008.01.T01	MTR_2g094130	40.306	392	214	9	71	456	89	466	1.20e-80	259
MsG0380016008.01.T01	MTR_2g094130	40.691	376	198	10	71	435	89	450	4.38e-78	252
MsG0380016008.01.T01	MTR_1g064710	40.000	350	173	10	67	403	97	422	7.93e-72	234
MsG0380016008.01.T01	MTR_1g064710	40.373	322	155	10	67	375	97	394	1.66e-60	203

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016008.01.T01	AT5G60580	47.409	386	174	10	55	433	84	447	3.10e-99	306
MsG0380016008.01.T01	AT5G60580	47.409	386	174	10	55	433	84	447	3.10e-99	306
MsG0380016008.01.T01	AT5G60580	46.565	393	174	11	55	433	84	454	2.25e-96	300
MsG0380016008.01.T01	AT5G60580	46.565	393	174	11	55	433	84	454	2.25e-96	300
MsG0380016008.01.T01	AT3G09760	39.237	367	194	9	76	435	115	459	8.14e-78	251
MsG0380016008.01.T01	AT5G03180	36.269	386	203	13	76	448	97	452	1.10e-71	234
MsG0380016008.01.T01	AT5G03180	36.856	388	202	14	76	448	62	421	1.26e-71	233
MsG0380016008.01.T01	AT5G03180	36.082	388	205	13	76	448	97	456	4.70e-71	233
MsG0380016008.01.T01	AT3G06330	34.559	408	222	11	33	435	48	415	9.16e-56	191
MsG0380016008.01.T01	AT3G06330	40.590	271	143	5	171	437	50	306	7.27e-55	186

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Find 108 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGTATGCCGAACAACAGT+CGG	0.522051	3:-77855048	None:intergenic
AAGATTGGCATTCTAGAGTG+TGG	0.608275	3:+77857625	MsG0380016008.01.T01:three_prime_UTR
AATAGAATATATGCGCAAAC+AGG	0.461916	3:-77857211	None:intergenic
AATGAAATGGCGAGAGCACG+TGG	0.562922	3:-77856463	None:intergenic
ACAGGATGACAAATGCGAAC+TGG	0.485665	3:-77857193	None:intergenic
ACCAAGACTGTGCAGTAAAG+TGG	0.528389	3:+77854938	MsG0380016008.01.T01:CDS
ACCACTTTACTGCACAGTCT+TGG	0.510134	3:-77854939	None:intergenic
ACTTTGACTGGATCGATGAC+CGG	0.564141	3:-77856312	None:intergenic
ACTTTGGTAGAATGTGGCCT+TGG	0.449976	3:-77853828	None:intergenic
AGAATGCAGACATATACTCT+AGG	0.607758	3:+77857693	MsG0380016008.01.T01:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCATAACAAGAACATTGT+AGG	-	Chr3:77855190-77855209	None:intergenic	30.0%
AATAGAATATATGCGCAAAC+AGG	-	Chr3:77857214-77857233	None:intergenic	30.0%
AATCATGCTACATAAGCAAA+AGG	-	Chr3:77853151-77853170	None:intergenic	30.0%
ACTTAAATCATAGCCAAACT+TGG	-	Chr3:77853389-77853408	None:intergenic	30.0%
AGTAGAAGAGTTTAATGAAC+AGG	-	Chr3:77857021-77857040	None:intergenic	30.0%
AGTGGATAATGATCTTACTA+TGG	-	Chr3:77857237-77857256	None:intergenic	30.0%
ATAATAAGCCTTCAACTTCA+AGG	+	Chr3:77853973-77853992	MsG0380016008.01.T01:CDS	30.0%
ATAATATACTCTACAGGATC+TGG	+	Chr3:77856175-77856194	MsG0380016008.01.T01:intron	30.0%
ATATCAGATGGGAAACAAAT+AGG	+	Chr3:77857403-77857422	MsG0380016008.01.T01:CDS	30.0%
ATCATGCTACATAAGCAAAA+GGG	-	Chr3:77853150-77853169	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	77853017	77857765	77853017	ID=MsG0380016008.01;Name=MsG0380016008.01
Chr3	mRNA	77853017	77857765	77853017	ID=MsG0380016008.01.T01;Parent=MsG0380016008.01;Name=MsG0380016008.01.T01;_AED=0.50;_eAED=0.52;_QI=0\|0.57\|0.62\|1\|1\|1\|8\|235\|473
Chr3	exon	77853017	77853091	77853017	ID=MsG0380016008.01.T01:exon:18060;Parent=MsG0380016008.01.T01
Chr3	exon	77853705	77854127	77853705	ID=MsG0380016008.01.T01:exon:18061;Parent=MsG0380016008.01.T01
Chr3	exon	77854233	77854407	77854233	ID=MsG0380016008.01.T01:exon:18062;Parent=MsG0380016008.01.T01
Chr3	exon	77854809	77855106	77854809	ID=MsG0380016008.01.T01:exon:18063;Parent=MsG0380016008.01.T01
Chr3	exon	77856296	77856359	77856296	ID=MsG0380016008.01.T01:exon:18064;Parent=MsG0380016008.01.T01
Chr3	exon	77856448	77856538	77856448	ID=MsG0380016008.01.T01:exon:18065;Parent=MsG0380016008.01.T01
Chr3	exon	77857159	77857238	77857159	ID=MsG0380016008.01.T01:exon:18066;Parent=MsG0380016008.01.T01
Chr3	exon	77857315	77857765	77857315	ID=MsG0380016008.01.T01:exon:18067;Parent=MsG0380016008.01.T01
Chr3	CDS	77853017	77853091	77853017	ID=MsG0380016008.01.T01:cds;Parent=MsG0380016008.01.T01
Chr3	CDS	77853705	77854127	77853705	ID=MsG0380016008.01.T01:cds;Parent=MsG0380016008.01.T01
Chr3	CDS	77854233	77854407	77854233	ID=MsG0380016008.01.T01:cds;Parent=MsG0380016008.01.T01
Chr3	CDS	77854809	77855106	77854809	ID=MsG0380016008.01.T01:cds;Parent=MsG0380016008.01.T01
Chr3	CDS	77856296	77856359	77856296	ID=MsG0380016008.01.T01:cds;Parent=MsG0380016008.01.T01
Chr3	CDS	77856448	77856538	77856448	ID=MsG0380016008.01.T01:cds;Parent=MsG0380016008.01.T01
Chr3	CDS	77857159	77857238	77857159	ID=MsG0380016008.01.T01:cds;Parent=MsG0380016008.01.T01
Chr3	CDS	77857315	77857530	77857315	ID=MsG0380016008.01.T01:cds;Parent=MsG0380016008.01.T01
Chr3	three_prime_UTR	77857531	77857765	77857531	ID=MsG0380016008.01.T01:three_prime_utr;Parent=MsG0380016008.01.T01

Gene Sequence

>MsG0380016008.01.T01

ATGGAGAAGGAAGGTGTTGAACTTCAAACTGATGCAGTTCCAATGATGTCAGATTCTTCTCTTCTTCATCATCAGTCCAGAAGGCCTAGTCTTTCATCTCTACAAATACCAACAAGGACACTAGAAAGTGCATTATCATCTTCTACTAAGACAGATGGTCCTACATTATCGAGTCCAGGTTCCACTAGAGGACTGCCACCAAGGCCACATTCTACCAAAGTCAAGTCCTCTATGAAAAATTTACTTTCTGATAGGAGCTTTAGGACAAAAACTTGTTCAGAAGATTCTGAAAAGAGAGTTTTGATTGTTTCTGATACTTTATCATCAGATAATGGTCCTTTGGATAATAAGCCTTCAACTTCAAGGTCTCATTCACTTAATAAGATTCTGTTCCCTTCATCGAGTAAAGCGGCGCATTCGTTACCGGTTACTCCAATTGCTAATTCAGGTGCAGAGAATGTACATGGAAGACATGTAGAGGGTGGTTCTGATTCAAATAAATCGAAAGTGAATAAGCATATGACTCGATCATTTTCAGTTCCGGTTAATGTCAAAGCCGCTAATTTAAGACCTGCAACAGATTCTAGGCGTCTGGTTCGTGTAATTTCAGCAAGACCACAGCCAGCAACTACTGATGGTGTTTCAACCCGCAGTGATTCAATGCAAGAGATTGTCATTGAAGATGCTTCCGAGGATATTCCAGAAGAAGAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGCGGAAGGGGGAGATACTCTTAGGATGGACTGCAGTTGCAAAGGTGAGCTTGCACTTGCACACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAATAAGACATGTGATGTCTGCAAGCAGGATGTCCGGAATCTTCCAGTAACACTCTTGAAAATTTCTAGTCCTCCGACTGTTGTTCGGCATACGTTGAATGCATCACAACAGAGAGCAGTAGCTAATTACAGTGTTTTCAAAACCGGACCGGTCATCGATCCAGTCAAAGTACTGAGTCACTGGTCAAACCAATGGGTTTCAGATTTGGGCCCACGTGCTCTCGCCATTTCATTGCCTTTCTCCTGCATTTTAGGTCTCCTTTCATCTATCATTGCTTCAACCATGGTGAGCAGGAGTTACATATGGGCTTATGCTTGCTTCCAGTTCGCATTTGTCATCCTGTTTGCGCATATATTCTATTCCATACTTAATGTGAGTGCGGTTTTCTCGGTTCTTCTTTCAACATTCACTGGATTTGGGATTGCAATCAGCATGAATTCTCTCCTAATGGAATATATCAGATGGGAAACAAATAGGCAGATTCGATCTTCTAATCAACATATTATTTCGAGTCAGCAGCAGCAAGAAACTCAGAGACAACCACATCAACTGCAAAGGATGCAGCAAGAGCAGCACCAATGA

Protein sequence

>MsG0380016008.01.T01

MEKEGVELQTDAVPMMSDSSLLHHQSRRPSLSSLQIPTRTLESALSSSTKTDGPTLSSPGSTRGLPPRPHSTKVKSSMKNLLSDRSFRTKTCSEDSEKRVLIVSDTLSSDNGPLDNKPSTSRSHSLNKILFPSSSKAAHSLPVTPIANSGAENVHGRHVEGGSDSNKSKVNKHMTRSFSVPVNVKAANLRPATDSRRLVRVISARPQPATTDGVSTRSDSMQEIVIEDASEDIPEEEAVCRICLVELAEGGDTLRMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVRNLPVTLLKISSPPTVVRHTLNASQQRAVANYSVFKTGPVIDPVKVLSHWSNQWVSDLGPRALAISLPFSCILGLLSSIIASTMVSRSYIWAYACFQFAFVILFAHIFYSILNVSAVFSVLLSTFTGFGIAISMNSLLMEYIRWETNRQIRSSNQHIISSQQQQETQRQPHQLQRMQQEQHQ*