AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048652.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048652.01.T01 MTR_8g088860 83.008 359 15 2 1 313 1 359 0.0 574
MsG0080048652.01.T01 MTR_8g088880 74.022 358 48 1 1 313 1 358 0.0 507
MsG0080048652.01.T01 MTR_8g088890 62.752 298 66 1 31 283 3 300 2.80e-124 358
MsG0080048652.01.T01 MTR_4g062570 38.764 356 171 3 1 311 1 354 1.08e-90 274
MsG0080048652.01.T01 MTR_4g072780 38.483 356 172 3 1 311 1 354 1.32e-89 271
MsG0080048652.01.T01 MTR_4g032360 38.483 356 172 3 1 311 1 354 1.68e-89 271
MsG0080048652.01.T01 MTR_4g062550 38.202 356 173 3 1 311 1 354 4.55e-89 270
MsG0080048652.01.T01 MTR_5g022720 42.857 147 61 1 157 303 140 263 8.58e-33 122
MsG0080048652.01.T01 MTR_4g076710 76.744 43 10 0 73 115 1 43 8.10e-18 76.3
MsG0080048652.01.T02 MTR_8g088860 83.008 359 15 2 1 313 1 359 0.0 574
MsG0080048652.01.T02 MTR_8g088880 74.022 358 48 1 1 313 1 358 0.0 507
MsG0080048652.01.T02 MTR_8g088890 62.752 298 66 1 31 283 3 300 2.80e-124 358
MsG0080048652.01.T02 MTR_4g062570 38.764 356 171 3 1 311 1 354 1.08e-90 274
MsG0080048652.01.T02 MTR_4g072780 38.483 356 172 3 1 311 1 354 1.32e-89 271
MsG0080048652.01.T02 MTR_4g032360 38.483 356 172 3 1 311 1 354 1.68e-89 271
MsG0080048652.01.T02 MTR_4g062550 38.202 356 173 3 1 311 1 354 4.55e-89 270
MsG0080048652.01.T02 MTR_5g022720 42.857 147 61 1 157 303 140 263 8.58e-33 122
MsG0080048652.01.T02 MTR_4g076710 76.744 43 10 0 73 115 1 43 8.10e-18 76.3
MsG0080048652.01.T03 MTR_8g088860 83.008 359 15 2 1 313 1 359 0.0 574
MsG0080048652.01.T03 MTR_8g088880 74.022 358 48 1 1 313 1 358 0.0 507
MsG0080048652.01.T03 MTR_8g088890 62.752 298 66 1 31 283 3 300 2.80e-124 358
MsG0080048652.01.T03 MTR_4g062570 38.764 356 171 3 1 311 1 354 1.08e-90 274
MsG0080048652.01.T03 MTR_4g072780 38.483 356 172 3 1 311 1 354 1.32e-89 271
MsG0080048652.01.T03 MTR_4g032360 38.483 356 172 3 1 311 1 354 1.68e-89 271
MsG0080048652.01.T03 MTR_4g062550 38.202 356 173 3 1 311 1 354 4.55e-89 270
MsG0080048652.01.T03 MTR_5g022720 42.857 147 61 1 157 303 140 263 8.58e-33 122
MsG0080048652.01.T03 MTR_4g076710 76.744 43 10 0 73 115 1 43 8.10e-18 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048652.01.T01 AT2G28680 36.415 357 180 3 1 312 1 355 1.90e-80 248
MsG0080048652.01.T01 AT1G07750 36.338 355 177 4 1 310 1 351 4.92e-80 247
MsG0080048652.01.T01 AT4G28520 27.572 243 153 5 83 306 196 434 5.23e-16 78.6
MsG0080048652.01.T01 AT5G44120 32.653 147 96 2 161 306 123 267 4.15e-13 68.9
MsG0080048652.01.T01 AT5G44120 32.653 147 96 2 161 306 206 350 9.55e-13 68.6
MsG0080048652.01.T01 AT5G44120 32.653 147 96 2 161 306 310 454 1.07e-12 68.9
MsG0080048652.01.T01 AT4G28520 30.612 147 101 1 160 306 360 505 1.18e-12 68.6
MsG0080048652.01.T01 AT1G03890 28.947 152 107 1 161 312 298 448 5.17e-12 66.6
MsG0080048652.01.T02 AT2G28680 36.415 357 180 3 1 312 1 355 1.90e-80 248
MsG0080048652.01.T02 AT1G07750 36.338 355 177 4 1 310 1 351 4.92e-80 247
MsG0080048652.01.T02 AT4G28520 27.572 243 153 5 83 306 196 434 5.23e-16 78.6
MsG0080048652.01.T02 AT5G44120 32.653 147 96 2 161 306 123 267 4.15e-13 68.9
MsG0080048652.01.T02 AT5G44120 32.653 147 96 2 161 306 206 350 9.55e-13 68.6
MsG0080048652.01.T02 AT5G44120 32.653 147 96 2 161 306 310 454 1.07e-12 68.9
MsG0080048652.01.T02 AT4G28520 30.612 147 101 1 160 306 360 505 1.18e-12 68.6
MsG0080048652.01.T02 AT1G03890 28.947 152 107 1 161 312 298 448 5.17e-12 66.6
MsG0080048652.01.T03 AT2G28680 36.415 357 180 3 1 312 1 355 1.90e-80 248
MsG0080048652.01.T03 AT1G07750 36.338 355 177 4 1 310 1 351 4.92e-80 247
MsG0080048652.01.T03 AT4G28520 27.572 243 153 5 83 306 196 434 5.23e-16 78.6
MsG0080048652.01.T03 AT5G44120 32.653 147 96 2 161 306 123 267 4.15e-13 68.9
MsG0080048652.01.T03 AT5G44120 32.653 147 96 2 161 306 206 350 9.55e-13 68.6
MsG0080048652.01.T03 AT5G44120 32.653 147 96 2 161 306 310 454 1.07e-12 68.9
MsG0080048652.01.T03 AT4G28520 30.612 147 101 1 160 306 360 505 1.18e-12 68.6
MsG0080048652.01.T03 AT1G03890 28.947 152 107 1 161 312 298 448 5.17e-12 66.6

Find 35 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACTCATAAGAAATTTAT+TGG 0.149911 contig392end:-8469 None:intergenic
CGATAATTAAAATTTATTAA+TGG 0.209904 contig392end:-8616 None:intergenic
TGTATGGAATTCATGTAATA+AGG 0.302209 contig392end:+8509 MsG0080048652.01.T01:three_prime_UTR
TATAAACAAGTCAAACTAAA+TGG 0.330642 contig392end:-8057 None:intergenic
ATACAACTCTACCGACCATT+TGG 0.355393 contig392end:-8573 None:intergenic
CCACTCATAAGAAATTTATT+GGG 0.391366 contig392end:-8468 None:intergenic
CCAAAGTAGGTCAATTAAAC+CGG 0.395853 contig392end:-8097 None:intergenic
CCCAATAAATTTCTTATGAG+TGG 0.423152 contig392end:+8468 MsG0080048652.01.T01:intron
CCGGTTTAATTGACCTACTT+TGG 0.427732 contig392end:+8097 MsG0080048652.01.T01:intron
TAGCCGGAGAGACATCAGTA+TGG 0.435918 contig392end:+7928 MsG0080048652.01.T01:CDS
ATTAATAAACCCTTCCCAAA+TGG 0.437112 contig392end:+8558 MsG0080048652.01.T01:three_prime_UTR
TACAACTCTACCGACCATTT+GGG 0.465051 contig392end:-8572 None:intergenic
TAGTAGTACTCCCTCCGTCC+CGG 0.505044 contig392end:+8078 MsG0080048652.01.T01:intron
GTCAATTAAACCGGGACGGA+GGG 0.522206 contig392end:-8088 None:intergenic
GAGAATAAGCCTCTCATGGT+TGG 0.528668 contig392end:-8703 None:intergenic
AGCCGGAGAGACATCAGTAT+GGG 0.531399 contig392end:+7929 MsG0080048652.01.T01:CDS
AACAAGTCAAACTAAATGGT+AGG 0.531603 contig392end:-8053 None:intergenic
AAAGACACTTGTTGCACAGT+AGG 0.532747 contig392end:-7963 None:intergenic
CTCTACCGACCATTTGGGAA+GGG 0.556012 contig392end:-8567 None:intergenic
CCTTTGTTTGAAGAGTTAGC+CGG 0.556322 contig392end:+7912 MsG0080048652.01.T01:CDS
CATAGAGAATAAGCCTCTCA+TGG 0.562142 contig392end:-8707 None:intergenic
TCCCCATACTGATGTCTCTC+CGG 0.565683 contig392end:-7931 None:intergenic
ACAAGTCAAACTAAATGGTA+GGG 0.575189 contig392end:-8052 None:intergenic
CAAAGTAGGTCAATTAAACC+GGG 0.622247 contig392end:-8096 None:intergenic
CATGGACATCCAACCATGAG+AGG 0.623434 contig392end:+8694 MsG0080048652.01.T02:three_prime_UTR
GGTAGGGAGAATGAGACTTG+TGG 0.625569 contig392end:-8036 None:intergenic
ACTCTACCGACCATTTGGGA+AGG 0.630387 contig392end:-8568 None:intergenic
GGTCAATTAAACCGGGACGG+AGG 0.631337 contig392end:-8089 None:intergenic
ATGTGAATTGTGAAACGACA+TGG 0.633456 contig392end:+8676 MsG0080048652.01.T02:three_prime_UTR
CCGGCTAACTCTTCAAACAA+AGG 0.634501 contig392end:-7912 None:intergenic
ATAAACCCTTCCCAAATGGT+CGG 0.634525 contig392end:+8562 MsG0080048652.01.T01:three_prime_UTR
GTAGGTCAATTAAACCGGGA+CGG 0.643102 contig392end:-8092 None:intergenic
TGTATGTCATGATGTTACAC+AGG 0.654240 contig392end:+8591 MsG0080048652.01.T01:three_prime_UTR
TTGTTGCACAGTAGGTGACA+AGG 0.665977 contig392end:-7955 None:intergenic
GCCGGAGAGACATCAGTATG+GGG 0.687095 contig392end:+7930 MsG0080048652.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CGATAATTAAAATTTATTAA+TGG - contig392end:8619-8638 None:intergenic 10.0%
!!! AATTAATTTGTAAATTGAAA+TGG + contig392end:6437-6456 MsG0080048652.01.T01:five_prime_UTR 10.0%
!!! TTTTTTTTATTGAATATGTA+TGG + contig392end:8493-8512 MsG0080048652.01.T01:intron 10.0%
!! AAAGTAGAATATATTGTATT+GGG + contig392end:8159-8178 MsG0080048652.01.T01:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + contig392end:8200-8219 MsG0080048652.01.T01:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + contig392end:8199-8218 MsG0080048652.01.T01:intron 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG + contig392end:8135-8154 MsG0080048652.01.T01:intron 15.0%
!!! ATAAGCAAAATTCATTTTTT+AGG - contig392end:8425-8444 None:intergenic 15.0%
!!! ATACAATTTTAATAAAGATG+AGG + contig392end:7178-7197 MsG0080048652.01.T01:CDS 15.0%
!!! ATTTGAAATTATTTTCGATT+TGG + contig392end:7825-7844 MsG0080048652.01.T01:intron 15.0%
!!! ATTTTGCTTATATTTTGAAA+CGG + contig392end:8434-8453 MsG0080048652.01.T01:intron 15.0%
!!! ATTTTGCTTATATTTTGAAA+CGG - contig392end:8453-8434 None:intergenic 15.0%
!!! TAAAGATTTTCCTTTTATTA+AGG + contig392end:7369-7388 MsG0080048652.01.T01:CDS 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG + contig392end:8134-8153 MsG0080048652.01.T01:intron 15.0%
!! AGAAGAAGTTTAATCAAATA+TGG + contig392end:6479-6498 MsG0080048652.01.T01:intron 20.0%
!! AGTTTAATCAAATATGGATT+TGG + contig392end:6485-6504 MsG0080048652.01.T01:intron 20.0%
!! CATTCATTTAATGATGTATA+TGG + contig392end:8361-8380 MsG0080048652.01.T01:intron 20.0%
!! GAAAGTAGAATATATTGTAT+TGG + contig392end:8158-8177 MsG0080048652.01.T01:intron 20.0%
!! GATCTTAACATTATATTTCT+TGG + contig392end:7053-7072 MsG0080048652.01.T01:CDS 20.0%
!! TATAAACAAGTCAAACTAAA+TGG - contig392end:8060-8079 None:intergenic 20.0%
!! TGAATGAAAATTGAATTCTT+CGG - contig392end:7760-7779 None:intergenic 20.0%
!! TTAGCAAAAACAAAAAAATG+TGG - contig392end:7580-7599 None:intergenic 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG + contig392end:8136-8155 MsG0080048652.01.T01:intron 20.0%
!!! ATAAGCAAAATTCACTTTTT+AGG + contig392end:8336-8355 MsG0080048652.01.T01:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+AGG + contig392end:8269-8288 MsG0080048652.01.T01:intron 20.0%
!!! TAAATTGAAATGGTTTTTTC+AGG + contig392end:6447-6466 MsG0080048652.01.T01:five_prime_UTR 20.0%
!!! TTTTGATTCACAAATCAATT+TGG + contig392end:7791-7810 MsG0080048652.01.T01:intron 20.0%
! AAAAAATAAGTGAATTCTCC+TGG - contig392end:7101-7120 None:intergenic 25.0%
! AAGTGGAAAAATAGAAATTG+TGG + contig392end:7495-7514 MsG0080048652.01.T01:CDS 25.0%
! AGTGGAAAAATAGAAATTGT+GGG + contig392end:7496-7515 MsG0080048652.01.T01:CDS 25.0%
! ATCACTTATTTGGTCAAATT+TGG + contig392end:6893-6912 MsG0080048652.01.T01:intron 25.0%
! CATAAACAAAGTCTTTAGTT+AGG - contig392end:7285-7304 None:intergenic 25.0%
! CATTCATTTAATGATGAATG+TGG - contig392end:8400-8419 None:intergenic 25.0%
! CCACTCATAAGAAATTTATT+GGG - contig392end:8471-8490 None:intergenic 25.0%
! GTGATAATCAAGTTAGAAAA+AGG + contig392end:7232-7251 MsG0080048652.01.T01:intron 25.0%
! TCCACTCATAAGAAATTTAT+TGG - contig392end:8472-8491 None:intergenic 25.0%
! TGCTAAAACACCATATATTA+AGG + contig392end:7312-7331 MsG0080048652.01.T01:intron 25.0%
! TGTATGGAATTCATGTAATA+AGG + contig392end:8509-8528 MsG0080048652.01.T01:three_prime_UTR 25.0%
! TTATCTAAATGATGATCTCT+TGG + contig392end:6737-6756 MsG0080048652.01.T01:intron 25.0%
!! TTCCTTTTATTAAGGATGTT+GGG + contig392end:7377-7396 MsG0080048652.01.T01:CDS 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG + contig392end:8246-8265 MsG0080048652.01.T01:intron 25.0%
!! TTTCCTTTTATTAAGGATGT+TGG + contig392end:7376-7395 MsG0080048652.01.T01:CDS 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG + contig392end:8247-8266 MsG0080048652.01.T01:intron 25.0%
!!! TTCACTTATTTTTTCCTAAG+TGG + contig392end:7107-7126 MsG0080048652.01.T01:CDS 25.0%
AACAAGTCAAACTAAATGGT+AGG - contig392end:8056-8075 None:intergenic 30.0%
AACCCAACATCCTTAATAAA+AGG - contig392end:7382-7401 None:intergenic 30.0%
ACAAGTCAAACTAAATGGTA+GGG - contig392end:8055-8074 None:intergenic 30.0%
ACTTGAACCTAATGCTATTA+AGG + contig392end:7420-7439 MsG0080048652.01.T01:CDS 30.0%
AGAAAATAGGTCAGTTATTC+CGG + contig392end:8282-8301 MsG0080048652.01.T01:intron 30.0%
AGGAAAATCTTTATCCGTTA+AGG - contig392end:7362-7381 None:intergenic 30.0%
ATAGAAATTGTGGGATTGAA+TGG + contig392end:7505-7524 MsG0080048652.01.T01:CDS 30.0%
ATATATTAAGGCCCAAAATG+TGG + contig392end:7324-7343 MsG0080048652.01.T01:intron 30.0%
ATTAATAAACCCTTCCCAAA+TGG + contig392end:8558-8577 MsG0080048652.01.T01:three_prime_UTR 30.0%
CCCAATAAATTTCTTATGAG+TGG + contig392end:8468-8487 MsG0080048652.01.T01:intron 30.0%
GATGAATGTGGTTCATAATA+TGG - contig392end:8388-8407 None:intergenic 30.0%
GTATCACAACATCACTTATT+TGG + contig392end:6883-6902 MsG0080048652.01.T01:intron 30.0%
TATATTAAGGCCCAAAATGT+GGG + contig392end:7325-7344 MsG0080048652.01.T01:intron 30.0%
! ACATTTTGGGCCTTAATATA+TGG - contig392end:7325-7344 None:intergenic 30.0%
! GTTTAAAACTCCAACTTACT+TGG - contig392end:7650-7669 None:intergenic 30.0%
!! AAGTTCTCAAGTTCAAGTTT+TGG + contig392end:6572-6591 MsG0080048652.01.T01:CDS 30.0%
!!! GTTGTTTTGAAGCTTAAGAA+AGG + contig392end:6972-6991 MsG0080048652.01.T01:CDS 30.0%
!!! TGCTTATATTTTGAAACGGA+GGG + contig392end:8438-8457 MsG0080048652.01.T01:intron 30.0%
!!! TGCTTATATTTTGAAACGGA+GGG - contig392end:8457-8438 None:intergenic 30.0%
!!! TTGCTTATATTTTGAAACGG+AGG + contig392end:8437-8456 MsG0080048652.01.T01:intron 30.0%
!!! TTGCTTATATTTTGAAACGG+AGG - contig392end:8456-8437 None:intergenic 30.0%
!!! TTTGTTTTTGCTAAAGTTGC+TGG + contig392end:7586-7605 MsG0080048652.01.T01:CDS 30.0%
AAGCTAACACAAAGCCAAAA+GGG + contig392end:7206-7225 MsG0080048652.01.T01:intron 35.0%
ATGTAAATCAACTGAATCCC+AGG - contig392end:7466-7485 None:intergenic 35.0%
ATGTGAATTGTGAAACGACA+TGG + contig392end:8676-8695 MsG0080048652.01.T02:three_prime_UTR 35.0%
ATGTTGGGTTAAGTGTGATT+AGG + contig392end:7392-7411 MsG0080048652.01.T01:CDS 35.0%
ATTGAATGGAAAACGTGTCT+TGG + contig392end:7519-7538 MsG0080048652.01.T01:CDS 35.0%
ATTTACATTGCTAGAGGAAG+TGG + contig392end:7478-7497 MsG0080048652.01.T01:CDS 35.0%
CAAAGTAGGTCAATTAAACC+GGG - contig392end:8099-8118 None:intergenic 35.0%
CCAAAGTAGGTCAATTAAAC+CGG - contig392end:8100-8119 None:intergenic 35.0%
GAAAATAGGTCAGTTATTCC+GGG + contig392end:8283-8302 MsG0080048652.01.T01:intron 35.0%
TATGCAGATTCGAACAAAGT+GGG + contig392end:6657-6676 MsG0080048652.01.T01:CDS 35.0%
TCTGTGTGAAAAACCAAAGT+AGG - contig392end:8113-8132 None:intergenic 35.0%
TCTTTAGTTAGGTCCAATTG+TGG - contig392end:7274-7293 None:intergenic 35.0%
TGTAAATCAACTGAATCCCA+GGG - contig392end:7465-7484 None:intergenic 35.0%
TGTATGTCATGATGTTACAC+AGG + contig392end:8591-8610 MsG0080048652.01.T01:three_prime_UTR 35.0%
TGTTGGGTTAAGTGTGATTA+GGG + contig392end:7393-7412 MsG0080048652.01.T01:CDS 35.0%
TTATGCAGATTCGAACAAAG+TGG + contig392end:6656-6675 MsG0080048652.01.T01:CDS 35.0%
TTGTTCGAATCTGCATAATG+AGG - contig392end:6654-6673 None:intergenic 35.0%
! AACAACTTCTTTTCCAGTGT+TGG - contig392end:6958-6977 None:intergenic 35.0%
! ACAACTTCTTTTCCAGTGTT+GGG - contig392end:6957-6976 None:intergenic 35.0%
! CAGTTGATTTACATTGCTAG+AGG + contig392end:7472-7491 MsG0080048652.01.T01:CDS 35.0%
! CGATTTGGAGTACGTTATTA+AGG + contig392end:7840-7859 MsG0080048652.01.T01:intron 35.0%
! TTGATTATCACAACCCCTTT+TGG - contig392end:7223-7242 None:intergenic 35.0%
! TTTTTCCTAAGTGGTGTTCA+AGG + contig392end:7116-7135 MsG0080048652.01.T01:CDS 35.0%
!! AAAGTGGGTTATGTCATAGA+AGG + contig392end:6672-6691 MsG0080048652.01.T01:CDS 35.0%
!!! ATGGTTTTTTCAGGAGCAAA+AGG + contig392end:6456-6475 MsG0080048652.01.T01:five_prime_UTR 35.0%
AAAGTCCTTGAACACCACTT+AGG - contig392end:7124-7143 None:intergenic 40.0%
ACTTCAATAGCTCATGTTCC+AGG + contig392end:7080-7099 MsG0080048652.01.T01:CDS 40.0%
AGCTAACACAAAGCCAAAAG+GGG + contig392end:7207-7226 MsG0080048652.01.T01:intron 40.0%
ATAAACCCTTCCCAAATGGT+CGG + contig392end:8562-8581 MsG0080048652.01.T01:three_prime_UTR 40.0%
ATACAACTCTACCGACCATT+TGG - contig392end:8576-8595 None:intergenic 40.0%
CAAGCTAACACAAAGCCAAA+AGG + contig392end:7205-7224 MsG0080048652.01.T01:intron 40.0%
CCGGTTTAATTGACCTACTT+TGG + contig392end:8097-8116 MsG0080048652.01.T01:intron 40.0%
CTTCAAACCTAATTACCCCT+GGG + contig392end:7446-7465 MsG0080048652.01.T01:CDS 40.0%
GATGTCATACCTGTACCTAT+TGG + contig392end:6996-7015 MsG0080048652.01.T01:CDS 40.0%
GTAAATCAACTGAATCCCAG+GGG - contig392end:7464-7483 None:intergenic 40.0%
GTGACAACTACCAAGTAAGT+TGG + contig392end:7637-7656 MsG0080048652.01.T01:intron 40.0%
GTTTCATGGTGGTTCAATGA+TGG + contig392end:7023-7042 MsG0080048652.01.T01:CDS 40.0%
TACAACTCTACCGACCATTT+GGG - contig392end:8575-8594 None:intergenic 40.0%
TGTCTTGGATGCTCAAGTTA+AGG + contig392end:7534-7553 MsG0080048652.01.T01:CDS 40.0%
! AAAGACACTTGTTGCACAGT+AGG - contig392end:7966-7985 None:intergenic 40.0%
! CAACTTCTTTTCCAGTGTTG+GGG - contig392end:6956-6975 None:intergenic 40.0%
! CCTTTGTTTGAAGAGTTAGC+CGG + contig392end:7912-7931 MsG0080048652.01.T01:CDS 40.0%
! CGTGACTAATCCCACATTTT+GGG - contig392end:7338-7357 None:intergenic 40.0%
! GCAACAAGTGTCTTTTAACG+TGG + contig392end:7971-7990 MsG0080048652.01.T01:CDS 40.0%
! TCAACTTGTTCTTCAGCCAA+GGG + contig392end:6617-6636 MsG0080048652.01.T01:CDS 40.0%
! TCGTGACTAATCCCACATTT+TGG - contig392end:7339-7358 None:intergenic 40.0%
!! ATGGTGGTGGTTACTACATT+TGG + contig392end:6547-6566 MsG0080048652.01.T01:CDS 40.0%
!! GAAGGTGCCTTAATAGCATT+AGG - contig392end:7430-7449 None:intergenic 40.0%
!! TACCTATTGGAGGTGTTTCA+TGG + contig392end:7009-7028 MsG0080048652.01.T01:CDS 40.0%
!!! GTTTTGGCTAAGACCAATGT+TGG + contig392end:6588-6607 MsG0080048652.01.T01:CDS 40.0%
AAGTTGACCAGCACCAACAT+TGG - contig392end:6604-6623 None:intergenic 45.0%
ACAGCACAACCATTGCTTGA+GGG + contig392end:6522-6541 MsG0080048652.01.T01:CDS 45.0%
ACCTATGCCTAAGCCACAAT+TGG + contig392end:7258-7277 MsG0080048652.01.T01:intron 45.0%
ACTGAATCCCAGGGGTAATT+AGG - contig392end:7456-7475 None:intergenic 45.0%
AGCAATGGTTGTGCTGTCTT+CGG - contig392end:6519-6538 None:intergenic 45.0%
AGTTGCTGGTGAAGAAGGAA+TGG + contig392end:7600-7619 MsG0080048652.01.T01:CDS 45.0%
ATAGGTCAGTTATTCCGGGA+CGG + contig392end:8287-8306 MsG0080048652.01.T01:intron 45.0%
CACCATGAAACACCTCCAAT+AGG - contig392end:7014-7033 None:intergenic 45.0%
CCAGGGGTAATTAGGTTTGA+AGG - contig392end:7448-7467 None:intergenic 45.0%
CCGGCTAACTCTTCAAACAA+AGG - contig392end:7915-7934 None:intergenic 45.0%
CCTTCAAACCTAATTACCCC+TGG + contig392end:7445-7464 MsG0080048652.01.T01:CDS 45.0%
GAAACACCTCCAATAGGTAC+AGG - contig392end:7008-7027 None:intergenic 45.0%
GCTAAAGTTGCTGGTGAAGA+AGG + contig392end:7595-7614 MsG0080048652.01.T01:CDS 45.0%
GGTCAAATTTGGCAAACGCA+GGG + contig392end:6904-6923 MsG0080048652.01.T01:intron 45.0%
GTAGGTCAATTAAACCGGGA+CGG - contig392end:8095-8114 None:intergenic 45.0%
GTCATACCTGTACCTATTGG+AGG + contig392end:6999-7018 MsG0080048652.01.T01:CDS 45.0%
GTTAGGTCCAATTGTGGCTT+AGG - contig392end:7268-7287 None:intergenic 45.0%
TCCAATTGTGGCTTAGGCAT+AGG - contig392end:7262-7281 None:intergenic 45.0%
TGGTCAAATTTGGCAAACGC+AGG + contig392end:6903-6922 MsG0080048652.01.T01:intron 45.0%
TTGGATGCTCAAGTTAAGGC+TGG + contig392end:7538-7557 MsG0080048652.01.T01:CDS 45.0%
TTGTTGCACAGTAGGTGACA+AGG - contig392end:7958-7977 None:intergenic 45.0%
! CAACTTGTTCTTCAGCCAAG+GGG + contig392end:6618-6637 MsG0080048652.01.T01:CDS 45.0%
! GTCAACTTGTTCTTCAGCCA+AGG + contig392end:6616-6635 MsG0080048652.01.T01:CDS 45.0%
!! CTATTGGAGGTGTTTCATGG+TGG + contig392end:7012-7031 MsG0080048652.01.T01:CDS 45.0%
!! GGGATTAGTCACGACCTTAA+CGG + contig392end:7345-7364 MsG0080048652.01.T01:CDS 45.0%
!!! TATTATAAACAAAAATTTTA+TGG - contig392end:6862-6881 None:intergenic 5.0%
ACTCTACCGACCATTTGGGA+AGG - contig392end:8571-8590 None:intergenic 50.0%
AGCCGGAGAGACATCAGTAT+GGG + contig392end:7929-7948 MsG0080048652.01.T01:CDS 50.0%
CAACCATTGCTTGAGGGAGA+TGG + contig392end:6528-6547 MsG0080048652.01.T01:CDS 50.0%
CATGGACATCCAACCATGAG+AGG + contig392end:8694-8713 MsG0080048652.01.T02:three_prime_UTR 50.0%
CTCTACCGACCATTTGGGAA+GGG - contig392end:8570-8589 None:intergenic 50.0%
GACAGCACAACCATTGCTTG+AGG + contig392end:6521-6540 MsG0080048652.01.T01:CDS 50.0%
GCTAAGACCAATGTTGGTGC+TGG + contig392end:6594-6613 MsG0080048652.01.T01:CDS 50.0%
GGTAGGGAGAATGAGACTTG+TGG - contig392end:8039-8058 None:intergenic 50.0%
GTCAATTAAACCGGGACGGA+GGG - contig392end:8091-8110 None:intergenic 50.0%
TAGCCGGAGAGACATCAGTA+TGG + contig392end:7928-7947 MsG0080048652.01.T01:CDS 50.0%
TCCCCATACTGATGTCTCTC+CGG - contig392end:7934-7953 None:intergenic 50.0%
TGAGGAAGAGCAAATCCCCT+TGG - contig392end:6636-6655 None:intergenic 50.0%
! GACTGATGGCGTAGTTGGAA+TGG + contig392end:6926-6945 MsG0080048652.01.T01:CDS 50.0%
CCACCATCTCCCTCAAGCAA+TGG - contig392end:6534-6553 None:intergenic 55.0%
CCATTGCTTGAGGGAGATGG+TGG + contig392end:6531-6550 MsG0080048652.01.T01:CDS 55.0%
GCCGGAGAGACATCAGTATG+GGG + contig392end:7930-7949 MsG0080048652.01.T01:CDS 55.0%
GGAATGGTACTCCCCAACAC+TGG + contig392end:6942-6961 MsG0080048652.01.T01:CDS 55.0%
GGTCAATTAAACCGGGACGG+AGG - contig392end:8092-8111 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG + contig392end:8291-8310 MsG0080048652.01.T01:intron 55.0%
TAGTAGTACTCCCTCCGTCC+CGG + contig392end:8078-8097 MsG0080048652.01.T01:intron 55.0%
TTGGCAAACGCAGGGACTGA+TGG + contig392end:6912-6931 MsG0080048652.01.T01:intron 55.0%
! TTGCTTGAGGGAGATGGTGG+TGG + contig392end:6534-6553 MsG0080048652.01.T01:CDS 55.0%
GGTCAGTTATTCCGGGACGG+AGG + contig392end:8290-8309 MsG0080048652.01.T01:intron 60.0%
! GCAGGGACTGATGGCGTAGT+TGG + contig392end:6921-6940 MsG0080048652.01.T01:intron 60.0%
AGGGTGTACTCCCTCCGTCC+CGG - contig392end:8304-8323 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
contig392end gene 6406 8724 6406 ID=MsG0080048652.01;Name=MsG0080048652.01
contig392end mRNA 6406 8684 6406 ID=MsG0080048652.01.T01;Parent=MsG0080048652.01;Name=MsG0080048652.01.T01;_AED=0.48;_eAED=0.48;_QI=92|0.8|0.66|1|0.6|0.5|6|212|313
contig392end exon 8463 8482 8463 ID=MsG0080048652.01.T01:exon:633;Parent=MsG0080048652.01.T01
contig392end exon 8508 8684 8508 ID=MsG0080048652.01.T01:exon:634;Parent=MsG0080048652.01.T01
contig392end five_prime_UTR 6406 6497 6406 ID=MsG0080048652.01.T01:five_prime_utr;Parent=MsG0080048652.01.T01
contig392end CDS 6498 6693 6498 ID=MsG0080048652.01.T01:cds;Parent=MsG0080048652.01.T01
contig392end CDS 6925 7199 6925 ID=MsG0080048652.01.T01:cds;Parent=MsG0080048652.01.T01
contig392end CDS 7334 7650 7334 ID=MsG0080048652.01.T01:cds;Parent=MsG0080048652.01.T01
contig392end CDS 7911 8064 7911 ID=MsG0080048652.01.T01:cds;Parent=MsG0080048652.01.T01
contig392end three_prime_UTR 8065 8079 8065 ID=MsG0080048652.01.T01:three_prime_utr;Parent=MsG0080048652.01.T01
contig392end three_prime_UTR 8463 8482 8463 ID=MsG0080048652.01.T01:three_prime_utr;Parent=MsG0080048652.01.T01
contig392end three_prime_UTR 8508 8684 8508 ID=MsG0080048652.01.T01:three_prime_utr;Parent=MsG0080048652.01.T01
contig392end mRNA 6406 8724 6406 ID=MsG0080048652.01.T02;Parent=MsG0080048652.01;Name=MsG0080048652.01.T02;_AED=0.48;_eAED=0.48;_QI=92|0.75|0.6|1|0.75|0.6|5|281|313
contig392end exon 8459 8724 8459 ID=MsG0080048652.01.T02:exon:635;Parent=MsG0080048652.01.T02
contig392end five_prime_UTR 6406 6497 6406 ID=MsG0080048652.01.T02:five_prime_utr;Parent=MsG0080048652.01.T02
contig392end CDS 6498 6693 6498 ID=MsG0080048652.01.T02:cds;Parent=MsG0080048652.01.T02
contig392end CDS 6925 7199 6925 ID=MsG0080048652.01.T02:cds;Parent=MsG0080048652.01.T02
contig392end CDS 7334 7650 7334 ID=MsG0080048652.01.T02:cds;Parent=MsG0080048652.01.T02
contig392end CDS 7911 8064 7911 ID=MsG0080048652.01.T02:cds;Parent=MsG0080048652.01.T02
contig392end three_prime_UTR 8065 8079 8065 ID=MsG0080048652.01.T02:three_prime_utr;Parent=MsG0080048652.01.T02
contig392end three_prime_UTR 8459 8724 8459 ID=MsG0080048652.01.T02:three_prime_utr;Parent=MsG0080048652.01.T02
contig392end mRNA 6406 8136 6406 ID=MsG0080048652.01.T03;Parent=MsG0080048652.01;Name=MsG0080048652.01.T03;_AED=0.48;_eAED=0.48;_QI=92|0.66|0.5|1|1|1|4|72|313
contig392end exon 7911 8136 7911 ID=MsG0080048652.01.T03:exon:636;Parent=MsG0080048652.01.T03
contig392end five_prime_UTR 6406 6497 6406 ID=MsG0080048652.01.T03:five_prime_utr;Parent=MsG0080048652.01.T03
contig392end CDS 6498 6693 6498 ID=MsG0080048652.01.T03:cds;Parent=MsG0080048652.01.T03
contig392end CDS 6925 7199 6925 ID=MsG0080048652.01.T03:cds;Parent=MsG0080048652.01.T03
contig392end CDS 7334 7650 7334 ID=MsG0080048652.01.T03:cds;Parent=MsG0080048652.01.T03
contig392end CDS 7911 8064 7911 ID=MsG0080048652.01.T03:cds;Parent=MsG0080048652.01.T03
contig392end three_prime_UTR 8065 8136 8065 ID=MsG0080048652.01.T03:three_prime_utr;Parent=MsG0080048652.01.T03
Gene Sequence

>MsG0080048652.01.T01

ATGGATTTGGATCTAACACCGAAGACAGCACAACCATTGCTTGAGGGAGATGGTGGTGGTTACTACATTTGGTTAAGTTCTCAAGTTCAAGTTTTGGCTAAGACCAATGTTGGTGCTGGTCAACTTGTTCTTCAGCCAAGGGGATTTGCTCTTCCTCATTATGCAGATTCGAACAAAGTGGGTTATGTCATAGAAGGGACTGATGGCGTAGTTGGAATGGTACTCCCCAACACTGGAAAAGAAGTTGTTTTGAAGCTTAAGAAAGGAGATGTCATACCTGTACCTATTGGAGGTGTTTCATGGTGGTTCAATGATGGTGAATCAGATCTTAACATTATATTTCTTGGAGAAACTTCAATAGCTCATGTTCCAGGAGAATTCACTTATTTTTTCCTAAGTGGTGTTCAAGGACTTTTATCAAGTTTCTCTAGTGAATTAATAAGCAAAGTATACAATTTTAATAAAGATGAGGCCCAAAATGTGGGATTAGTCACGACCTTAACGGATAAAGATTTTCCTTTTATTAAGGATGTTGGGTTAAGTGTGATTAGGGTTAAACTTGAACCTAATGCTATTAAGGCACCTTCAAACCTAATTACCCCTGGGATTCAGTTGATTTACATTGCTAGAGGAAGTGGAAAAATAGAAATTGTGGGATTGAATGGAAAACGTGTCTTGGATGCTCAAGTTAAGGCTGGTCATTTGATTGTTGTGCCACATTTTTTTGTTTTTGCTAAAGTTGCTGGTGAAGAAGGAATGGAGAGTTACACTATTGTGACAACTACCAAACCTTTGTTTGAAGAGTTAGCCGGAGAGACATCAGTATGGGGAGCCTTGTCACCTACTGTGCAACAAGTGTCTTTTAACGTGGATTCTGAGTTTCAAAAACTTTTCATATCTAAGACTACAGAAACCACAAGTCTCATTCTCCCTACCATTTAG

>MsG0080048652.01.T02

ATGGATTTGGATCTAACACCGAAGACAGCACAACCATTGCTTGAGGGAGATGGTGGTGGTTACTACATTTGGTTAAGTTCTCAAGTTCAAGTTTTGGCTAAGACCAATGTTGGTGCTGGTCAACTTGTTCTTCAGCCAAGGGGATTTGCTCTTCCTCATTATGCAGATTCGAACAAAGTGGGTTATGTCATAGAAGGGACTGATGGCGTAGTTGGAATGGTACTCCCCAACACTGGAAAAGAAGTTGTTTTGAAGCTTAAGAAAGGAGATGTCATACCTGTACCTATTGGAGGTGTTTCATGGTGGTTCAATGATGGTGAATCAGATCTTAACATTATATTTCTTGGAGAAACTTCAATAGCTCATGTTCCAGGAGAATTCACTTATTTTTTCCTAAGTGGTGTTCAAGGACTTTTATCAAGTTTCTCTAGTGAATTAATAAGCAAAGTATACAATTTTAATAAAGATGAGGCCCAAAATGTGGGATTAGTCACGACCTTAACGGATAAAGATTTTCCTTTTATTAAGGATGTTGGGTTAAGTGTGATTAGGGTTAAACTTGAACCTAATGCTATTAAGGCACCTTCAAACCTAATTACCCCTGGGATTCAGTTGATTTACATTGCTAGAGGAAGTGGAAAAATAGAAATTGTGGGATTGAATGGAAAACGTGTCTTGGATGCTCAAGTTAAGGCTGGTCATTTGATTGTTGTGCCACATTTTTTTGTTTTTGCTAAAGTTGCTGGTGAAGAAGGAATGGAGAGTTACACTATTGTGACAACTACCAAACCTTTGTTTGAAGAGTTAGCCGGAGAGACATCAGTATGGGGAGCCTTGTCACCTACTGTGCAACAAGTGTCTTTTAACGTGGATTCTGAGTTTCAAAAACTTTTCATATCTAAGACTACAGAAACCACAAGTCTCATTCTCCCTACCATTTAG

>MsG0080048652.01.T03

ATGGATTTGGATCTAACACCGAAGACAGCACAACCATTGCTTGAGGGAGATGGTGGTGGTTACTACATTTGGTTAAGTTCTCAAGTTCAAGTTTTGGCTAAGACCAATGTTGGTGCTGGTCAACTTGTTCTTCAGCCAAGGGGATTTGCTCTTCCTCATTATGCAGATTCGAACAAAGTGGGTTATGTCATAGAAGGGACTGATGGCGTAGTTGGAATGGTACTCCCCAACACTGGAAAAGAAGTTGTTTTGAAGCTTAAGAAAGGAGATGTCATACCTGTACCTATTGGAGGTGTTTCATGGTGGTTCAATGATGGTGAATCAGATCTTAACATTATATTTCTTGGAGAAACTTCAATAGCTCATGTTCCAGGAGAATTCACTTATTTTTTCCTAAGTGGTGTTCAAGGACTTTTATCAAGTTTCTCTAGTGAATTAATAAGCAAAGTATACAATTTTAATAAAGATGAGGCCCAAAATGTGGGATTAGTCACGACCTTAACGGATAAAGATTTTCCTTTTATTAAGGATGTTGGGTTAAGTGTGATTAGGGTTAAACTTGAACCTAATGCTATTAAGGCACCTTCAAACCTAATTACCCCTGGGATTCAGTTGATTTACATTGCTAGAGGAAGTGGAAAAATAGAAATTGTGGGATTGAATGGAAAACGTGTCTTGGATGCTCAAGTTAAGGCTGGTCATTTGATTGTTGTGCCACATTTTTTTGTTTTTGCTAAAGTTGCTGGTGAAGAAGGAATGGAGAGTTACACTATTGTGACAACTACCAAACCTTTGTTTGAAGAGTTAGCCGGAGAGACATCAGTATGGGGAGCCTTGTCACCTACTGTGCAACAAGTGTCTTTTAACGTGGATTCTGAGTTTCAAAAACTTTTCATATCTAAGACTACAGAAACCACAAGTCTCATTCTCCCTACCATTTAG

Protein sequence

>MsG0080048652.01.T01

MDLDLTPKTAQPLLEGDGGGYYIWLSSQVQVLAKTNVGAGQLVLQPRGFALPHYADSNKVGYVIEGTDGVVGMVLPNTGKEVVLKLKKGDVIPVPIGGVSWWFNDGESDLNIIFLGETSIAHVPGEFTYFFLSGVQGLLSSFSSELISKVYNFNKDEAQNVGLVTTLTDKDFPFIKDVGLSVIRVKLEPNAIKAPSNLITPGIQLIYIARGSGKIEIVGLNGKRVLDAQVKAGHLIVVPHFFVFAKVAGEEGMESYTIVTTTKPLFEELAGETSVWGALSPTVQQVSFNVDSEFQKLFISKTTETTSLILPTI*

>MsG0080048652.01.T02

MDLDLTPKTAQPLLEGDGGGYYIWLSSQVQVLAKTNVGAGQLVLQPRGFALPHYADSNKVGYVIEGTDGVVGMVLPNTGKEVVLKLKKGDVIPVPIGGVSWWFNDGESDLNIIFLGETSIAHVPGEFTYFFLSGVQGLLSSFSSELISKVYNFNKDEAQNVGLVTTLTDKDFPFIKDVGLSVIRVKLEPNAIKAPSNLITPGIQLIYIARGSGKIEIVGLNGKRVLDAQVKAGHLIVVPHFFVFAKVAGEEGMESYTIVTTTKPLFEELAGETSVWGALSPTVQQVSFNVDSEFQKLFISKTTETTSLILPTI*

>MsG0080048652.01.T03

MDLDLTPKTAQPLLEGDGGGYYIWLSSQVQVLAKTNVGAGQLVLQPRGFALPHYADSNKVGYVIEGTDGVVGMVLPNTGKEVVLKLKKGDVIPVPIGGVSWWFNDGESDLNIIFLGETSIAHVPGEFTYFFLSGVQGLLSSFSSELISKVYNFNKDEAQNVGLVTTLTDKDFPFIKDVGLSVIRVKLEPNAIKAPSNLITPGIQLIYIARGSGKIEIVGLNGKRVLDAQVKAGHLIVVPHFFVFAKVAGEEGMESYTIVTTTKPLFEELAGETSVWGALSPTVQQVSFNVDSEFQKLFISKTTETTSLILPTI*