AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048948.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048948.01.T01 MTR_3g083980 97.854 466 10 0 1 466 1 466 0.0 945
MsG0080048948.01.T01 MTR_3g083980 97.538 325 8 0 1 325 1 325 0.0 654
MsG0080048948.01.T01 MTR_5g014820 25.515 388 256 9 77 453 56 421 7.62e-25 107
MsG0080048948.01.T01 MTR_7g111540 24.206 252 162 9 74 307 48 288 3.36e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048948.01.T01 AT1G08490 77.253 466 103 1 1 466 1 463 0.0 731
MsG0080048948.01.T01 AT5G65720 24.444 450 283 11 20 453 12 420 1.28e-21 97.4
MsG0080048948.01.T01 AT5G65720 24.444 450 283 11 20 453 12 420 1.28e-21 97.4
MsG0080048948.01.T01 AT5G65720 23.920 301 188 8 169 453 17 292 3.79e-13 70.9

Find 44 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCTTAGTTCTCCCTCTT+TGG 0.194746 contig557end:-14816 MsG0080048948.01.T01:exon
ACTCTTAGTTCTCCCTCTTT+GGG 0.324312 contig557end:-14815 MsG0080048948.01.T01:exon
TTACTTCCTGGTGAAGTATA+GGG 0.324627 contig557end:+14771 MsG0080048948.01.T01:intergenic
AGTGATTGAACAGCAATAAC+TGG 0.340667 contig557end:+14931 MsG0080048948.01.T01:intergenic
ATACTTCACCAGGAAGTAAA+TGG 0.354665 contig557end:-14767 MsG0080048948.01.T01:exon
TTTACTTCCTGGTGAAGTAT+AGG 0.375419 contig557end:+14770 MsG0080048948.01.T01:intergenic
CCTGGTGAAGTATAGGGAAA+TGG 0.386768 contig557end:+14777 MsG0080048948.01.T01:intergenic
TAACTGGGGCTTGGAAGTTT+CGG 0.386871 contig557end:+14947 MsG0080048948.01.T01:intergenic
TCTGACACGTGATGTGGTTC+TGG 0.390059 contig557end:+14907 MsG0080048948.01.T01:intergenic
CTGGTGAAGTATAGGGAAAT+GGG 0.406014 contig557end:+14778 MsG0080048948.01.T01:intergenic
ATAGGAGAATTCCAAAATCT+TGG 0.408694 contig557end:+15002 MsG0080048948.01.T01:intergenic
TTACAATTCAAACGTGCATC+GGG 0.418015 contig557end:-14660 MsG0080048948.01.T01:exon
TTGCTAACCACCCACCCAAT+AGG 0.424471 contig557end:+14984 MsG0080048948.01.T01:intergenic
TTGACGGTTGATGCACGAAC+AGG 0.429519 contig557end:+14857 MsG0080048948.01.T01:intergenic
AATGCCTTCACAACAGCTGC+AGG 0.442651 contig557end:+14701 MsG0080048948.01.T01:intergenic
TTCAGCTACTGCTTGATTGA+CGG 0.459909 contig557end:+14841 MsG0080048948.01.T01:intergenic
AAGTATAGGGAAATGGGGTC+TGG 0.471495 contig557end:+14784 MsG0080048948.01.T01:intergenic
TTGGAATTCTCCTATTGGGT+GGG 0.478545 contig557end:-14994 MsG0080048948.01.T01:exon
GAATTCTCCTATTGGGTGGG+TGG 0.497309 contig557end:-14991 MsG0080048948.01.T01:exon
GAACAGCAATAACTGGGGCT+TGG 0.497888 contig557end:+14938 MsG0080048948.01.T01:intergenic
ATCATGCAACAAACACCATC+GGG 0.502330 contig557end:+15102 MsG0080048948.01.T01:intergenic
CCATTTCCCTATACTTCACC+AGG 0.523096 contig557end:-14777 MsG0080048948.01.T01:exon
ACCACATCACGTGTCAGACT+TGG 0.534095 contig557end:-14902 MsG0080048948.01.T01:exon
GTGATTGAACAGCAATAACT+GGG 0.535039 contig557end:+14932 MsG0080048948.01.T01:intergenic
GAACAGGGAGATAAGTTAAA+CGG 0.538325 contig557end:+14873 MsG0080048948.01.T01:intergenic
TTTGGAATTCTCCTATTGGG+TGG 0.543931 contig557end:-14995 MsG0080048948.01.T01:exon
GTTACAATTCAAACGTGCAT+CGG 0.544500 contig557end:-14661 MsG0080048948.01.T01:exon
GAAGAGAAACATTAAAGAGT+CGG 0.549659 contig557end:+15054 MsG0080048948.01.T01:intergenic
GGAAATGGGGTCTGGTAGTG+TGG 0.550619 contig557end:+14792 MsG0080048948.01.T01:intergenic
GCATTGCAAGACTATTATGA+AGG 0.553126 contig557end:-14683 MsG0080048948.01.T01:exon
GAAGCCTGCAGCTGTTGTGA+AGG 0.567977 contig557end:-14705 MsG0080048948.01.T01:exon
AATCATGCAACAAACACCAT+CGG 0.571161 contig557end:+15101 MsG0080048948.01.T01:intergenic
CTGGTAGTGTGGCCCAAAGA+GGG 0.578324 contig557end:+14803 MsG0080048948.01.T01:intergenic
ATTGGGTGGGTGGTTAGCAA+TGG 0.581927 contig557end:-14981 MsG0080048948.01.T01:exon
TCTGGTAGTGTGGCCCAAAG+AGG 0.600966 contig557end:+14802 MsG0080048948.01.T01:intergenic
AAAGAGGGAGAACTAAGAGT+TGG 0.613517 contig557end:+14818 MsG0080048948.01.T01:intergenic
TGACGGTTGATGCACGAACA+GGG 0.628972 contig557end:+14858 MsG0080048948.01.T01:intergenic
CAGTGAATTGAATTTCCCGA+TGG 0.634111 contig557end:-15117 MsG0080048948.01.T01:exon
GCCAAGTCTGACACGTGATG+TGG 0.638545 contig557end:+14901 MsG0080048948.01.T01:intergenic
ATCGGGGCATACATTACTTG+AGG 0.654297 contig557end:-14643 MsG0080048948.01.T01:intron
TGGTGAAGTATAGGGAAATG+GGG 0.664059 contig557end:+14779 MsG0080048948.01.T01:intergenic
TACAATTCAAACGTGCATCG+GGG 0.710508 contig557end:-14659 MsG0080048948.01.T01:exon
CAGGGAGATAAGTTAAACGG+CGG 0.749242 contig557end:+14876 MsG0080048947.01.T01:intergenic
TGATTGAACAGCAATAACTG+GGG 0.771247 contig557end:+14933 MsG0080048947.01.T01:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAACAATTTTTTATGAAAA+AGG - contig557end:14470-14489 MsG0080048948.01.T01:CDS 10.0%
!!! TTATTCATAAACTTTTATAT+AGG - contig557end:14555-14574 MsG0080048948.01.T01:intron 10.0%
!! AAAACAAAATCTTATTAACA+TGG + contig557end:12207-12226 MsG0080048948.01.T01:intergenic 15.0%
!! ATCATGTTTAAAAATTTAGA+TGG + contig557end:10848-10867 MsG0080048948.01.T01:intergenic 15.0%
!! ATCTTAAAAATGATATACAT+TGG - contig557end:12373-12392 MsG0080048948.01.T01:intron 15.0%
!! GGTTATATTAAATTTAGAAA+AGG + contig557end:12676-12695 MsG0080048948.01.T01:intergenic 15.0%
!! TATAATAACTTACCTAAAAA+TGG + contig557end:12094-12113 MsG0080048948.01.T01:intergenic 15.0%
!! TCATGTTTAAAAATTTAGAT+GGG + contig557end:10847-10866 MsG0080048948.01.T01:intergenic 15.0%
!!! ATTATTGTGTTTGTTAAATT+TGG - contig557end:10505-10524 MsG0080048948.01.T01:intron 15.0%
!!! TGTATATCATTTTTAAGATA+AGG + contig557end:12372-12391 MsG0080048948.01.T01:intergenic 15.0%
!! AAAATCATTAATTTAGCTAG+TGG + contig557end:13867-13886 MsG0080048948.01.T01:intergenic 20.0%
!! AATGATTTCAGATGTATATT+TGG - contig557end:12281-12300 MsG0080048948.01.T01:CDS 20.0%
!! AATTATAACGATAACATTGA+AGG + contig557end:13840-13859 MsG0080048948.01.T01:intergenic 20.0%
!! ATCAAATGTGATATTGAAAT+AGG - contig557end:10922-10941 MsG0080048948.01.T01:intron 20.0%
!! ATTATAACGATAACATTGAA+GGG + contig557end:13839-13858 MsG0080048948.01.T01:intergenic 20.0%
!! ATTTCCAATATTCAACTATA+AGG - contig557end:11510-11529 MsG0080048948.01.T01:intron 20.0%
!! CATGTTTAAAAATTTAGATG+GGG + contig557end:10846-10865 MsG0080048948.01.T01:intergenic 20.0%
!! GTATCTTATTATTATATCTG+AGG - contig557end:12781-12800 MsG0080048948.01.T01:intron 20.0%
!! TTTAGGTAAGTTATTATACA+CGG - contig557end:12096-12115 MsG0080048948.01.T01:intron 20.0%
!! TTTATGTGCACAATTATTTA+TGG - contig557end:10557-10576 MsG0080048948.01.T01:intron 20.0%
!! TTTCCAATATTCAACTATAA+GGG - contig557end:11511-11530 MsG0080048948.01.T01:intron 20.0%
!!! ACCAAGTTTAAATGTTTTTA+GGG + contig557end:11619-11638 MsG0080048948.01.T01:intergenic 20.0%
!!! ATTTCTCTAGAATAACTTAA+AGG + contig557end:14525-14544 MsG0080048948.01.T01:intergenic 20.0%
!!! TGTTAAATTTGGAATTTCAT+TGG - contig557end:10516-10535 MsG0080048948.01.T01:intron 20.0%
!!! TTGTGCATATTTTTAAGATT+CGG - contig557end:10874-10893 MsG0080048948.01.T01:CDS 20.0%
!!! TTTTACATGAGCATATTTAT+TGG + contig557end:11033-11052 MsG0080048948.01.T01:intergenic 20.0%
! AAAAACCATTGAAACAATTG+GGG + contig557end:11675-11694 MsG0080048948.01.T01:intergenic 25.0%
! AAATACAAGAATAAACCACA+GGG + contig557end:13346-13365 MsG0080048948.01.T01:intergenic 25.0%
! AAATCAACTAAATCATAACG+AGG + contig557end:13141-13160 MsG0080048948.01.T01:intergenic 25.0%
! AAGATTCACTTCTAATCATT+TGG - contig557end:13397-13416 MsG0080048948.01.T01:intron 25.0%
! AATAACTTACCTAAAAATGG+AGG + contig557end:12091-12110 MsG0080048948.01.T01:intergenic 25.0%
! AATAAGTTAAAAACAACCCA+TGG - contig557end:14578-14597 MsG0080048948.01.T01:intron 25.0%
! AATATACATTAATGAGGTTG+AGG + contig557end:13789-13808 MsG0080048948.01.T01:intergenic 25.0%
! AATCTAATAGCTTATTCTTG+GGG - contig557end:10695-10714 MsG0080048948.01.T01:intron 25.0%
! ACATGAACAACTAGTTAAAA+TGG - contig557end:12144-12163 MsG0080048948.01.T01:intron 25.0%
! ACCCTAAAAACATTTAAACT+TGG - contig557end:11615-11634 MsG0080048948.01.T01:intron 25.0%
! AGAAAAAATCCTGTTTGTTT+AGG - contig557end:12179-12198 MsG0080048948.01.T01:intron 25.0%
! AGATTCACTTCTAATCATTT+GGG - contig557end:13398-13417 MsG0080048948.01.T01:intron 25.0%
! ATTGACAACGATCATTTAAA+TGG + contig557end:12588-12607 MsG0080048948.01.T01:intergenic 25.0%
! CAATCTAATAGCTTATTCTT+GGG - contig557end:10694-10713 MsG0080048948.01.T01:intron 25.0%
! GAAAAACCATTGAAACAATT+GGG + contig557end:11676-11695 MsG0080048948.01.T01:intergenic 25.0%
! GATAATGACAATCCAAATAA+AGG + contig557end:11009-11028 MsG0080048948.01.T01:intergenic 25.0%
! GATACAATACAAGTAATTGA+TGG + contig557end:12766-12785 MsG0080048948.01.T01:intergenic 25.0%
! TAAATACAAGAATAAACCAC+AGG + contig557end:13347-13366 MsG0080048948.01.T01:intergenic 25.0%
! TAATTGATTACAGACTAAGA+AGG + contig557end:14694-14713 MsG0080048948.01.T01:intergenic 25.0%
! TAATTGTGCACATAAACATT+TGG + contig557end:10553-10572 MsG0080048948.01.T01:intergenic 25.0%
! TCAATCTAATAGCTTATTCT+TGG - contig557end:10693-10712 MsG0080048948.01.T01:intron 25.0%
! TGAAAAACCATTGAAACAAT+TGG + contig557end:11677-11696 MsG0080048948.01.T01:intergenic 25.0%
! TGAAGTTCTATTCCTTTATT+TGG - contig557end:10994-11013 MsG0080048948.01.T01:intron 25.0%
! TGGATTCTTATATGGTAAAA+TGG - contig557end:12048-12067 MsG0080048948.01.T01:intron 25.0%
! TTACATACACTCATATAAAG+AGG - contig557end:11487-11506 MsG0080048948.01.T01:intron 25.0%
! TTATTAGGTGAAAACAATGT+AGG - contig557end:14015-14034 MsG0080048948.01.T01:CDS 25.0%
! TTTATAGTCAATAAGACTGA+AGG + contig557end:12933-12952 MsG0080048948.01.T01:intergenic 25.0%
!! AAAAATGATATACATTGGCT+TGG - contig557end:12378-12397 MsG0080048948.01.T01:intron 25.0%
!! AAATTTAAAACAAGGAGATG+AGG - contig557end:10724-10743 MsG0080048948.01.T01:intron 25.0%
!! AGCTTAACTACAAGTTATTT+TGG + contig557end:13571-13590 MsG0080048948.01.T01:intergenic 25.0%
!! ATTTTACCATACTAGATTTG+AGG - contig557end:12806-12825 MsG0080048948.01.T01:intron 25.0%
!! CACCAAGTTTAAATGTTTTT+AGG + contig557end:11620-11639 MsG0080048948.01.T01:intergenic 25.0%
!! GCTTTGAATATACATTAATG+AGG + contig557end:13795-13814 MsG0080048948.01.T01:intergenic 25.0%
!! TACTAAATTGCCCAAATTTT+CGG - contig557end:14712-14731 MsG0080048948.01.T01:exon 25.0%
!! TATGACATCCAAATTTTCAT+AGG - contig557end:14217-14236 MsG0080048948.01.T01:intron 25.0%
!! TTGGAATTTCATTGGTAATT+TGG - contig557end:10524-10543 MsG0080048948.01.T01:intron 25.0%
!! TTTTGTAGCTAATACATTTC+CGG - contig557end:12223-12242 MsG0080048948.01.T01:CDS 25.0%
!!! AAAATGATATACATTGGCTT+GGG - contig557end:12379-12398 MsG0080048948.01.T01:intron 25.0%
!!! CTTTATAGGTTTTGACTTAA+CGG - contig557end:11346-11365 MsG0080048948.01.T01:intron 25.0%
!!! TGGTAGATCGAATAATTTTT+TGG + contig557end:12568-12587 MsG0080048948.01.T01:intergenic 25.0%
!!! TTTTGGTTATAGAATCCTAT+GGG + contig557end:12551-12570 MsG0080048948.01.T01:intergenic 25.0%
!!! TTTTTGGTTATAGAATCCTA+TGG + contig557end:12552-12571 MsG0080048948.01.T01:intergenic 25.0%
!!! TTTTTTCTTAGCCAAGATTT+TGG - contig557end:10107-10126 MsG0080048948.01.T01:exon 25.0%
AAAACCATTGAAACAATTGG+GGG + contig557end:11674-11693 MsG0080048947.01.T01:intergenic 30.0%
AAAAGTTTCTGTATTCGTAC+TGG + contig557end:11430-11449 MsG0080048947.01.T01:intergenic 30.0%
AAATGACTGTAGGTTATGAA+TGG + contig557end:12697-12716 MsG0080048947.01.T01:intergenic 30.0%
AACAAGAAAATGCATATAGC+TGG + contig557end:14423-14442 MsG0080048947.01.T01:intergenic 30.0%
AAGAGGATAGTAAAGTAAAC+GGG + contig557end:13022-13041 MsG0080048948.01.T01:intergenic 30.0%
ACATCATCGAAATTCAAGAA+AGG + contig557end:14777-14796 MsG0080048948.01.T01:intergenic 30.0%
ACTAGTTGTTCATGTTTGAT+AGG + contig557end:12139-12158 MsG0080048948.01.T01:intergenic 30.0%
AGAAAACTAGAGTAATTCAC+AGG - contig557end:12952-12971 MsG0080048948.01.T01:intron 30.0%
AGAGTTTCCATTTCTTATCT+TGG - contig557end:12627-12646 MsG0080048948.01.T01:intron 30.0%
AGTCCCTTATAGTTGAATAT+TGG + contig557end:11517-11536 MsG0080048948.01.T01:intergenic 30.0%
AGTGTCTATGTCATGAAATA+AGG - contig557end:14647-14666 MsG0080048948.01.T01:exon 30.0%
ATAGGAGAATTCCAAAATCT+TGG + contig557end:10121-10140 MsG0080048948.01.T01:intergenic 30.0%
ATTAACTAATGACATGTCCA+TGG + contig557end:14598-14617 MsG0080048948.01.T01:intergenic 30.0%
CAATCAATACATTAAGTGCT+TGG + contig557end:13274-13293 MsG0080048948.01.T01:intergenic 30.0%
CAATTAGTAGCTCAAAAAGT+TGG - contig557end:11123-11142 MsG0080048948.01.T01:intron 30.0%
CATTAGATGGTTAAGCAAAT+TGG + contig557end:13242-13261 MsG0080048948.01.T01:intergenic 30.0%
CCAATTACTACCGAAAATTT+GGG + contig557end:14725-14744 MsG0080048948.01.T01:intergenic 30.0%
CTAACACTTATTCTCTTGTT+GGG + contig557end:14096-14115 MsG0080048948.01.T01:intergenic 30.0%
CTGATCAAGTTAAACATTGT+CGG + contig557end:13626-13645 MsG0080048948.01.T01:intergenic 30.0%
CTTCAATTCATTCAAGTAGT+CGG - contig557end:14960-14979 MsG0080048948.01.T01:exon 30.0%
GAAAAAAAAGTTCACAAACC+TGG + contig557end:12334-12353 MsG0080048948.01.T01:intergenic 30.0%
GAAGAAGTAAAACAACAATC+AGG + contig557end:13723-13742 MsG0080048948.01.T01:intergenic 30.0%
GAAGAGAAACATTAAAGAGT+CGG + contig557end:10069-10088 MsG0080048948.01.T01:intergenic 30.0%
GAAGAGGATAGTAAAGTAAA+CGG + contig557end:13023-13042 MsG0080048948.01.T01:intergenic 30.0%
GACATGTTATTCCACAATTA+AGG + contig557end:15113-15132 MsG0080048948.01.T01:intergenic 30.0%
GAGTTTCCATTTCTTATCTT+GGG - contig557end:12628-12647 MsG0080048948.01.T01:intron 30.0%
TAAAGGAATAGAACTTCAAC+CGG + contig557end:10992-11011 MsG0080048948.01.T01:intergenic 30.0%
TATTAGAGATATTGCACACT+GGG - contig557end:11814-11833 MsG0080048948.01.T01:intron 30.0%
TATTTATGGATGTAGTGCAA+AGG - contig557end:10571-10590 MsG0080048948.01.T01:intron 30.0%
TATTTCATCTTCTTACCTGT+TGG + contig557end:14394-14413 MsG0080048948.01.T01:intergenic 30.0%
TCCAATTACTACCGAAAATT+TGG + contig557end:14726-14745 MsG0080048948.01.T01:intergenic 30.0%
TCCAGATATAGACAAATTGA+AGG - contig557end:11185-11204 MsG0080048948.01.T01:intron 30.0%
TCCTTCAATTTGTCTATATC+TGG + contig557end:11189-11208 MsG0080048948.01.T01:intergenic 30.0%
TCTAACACTTATTCTCTTGT+TGG + contig557end:14097-14116 MsG0080048948.01.T01:intergenic 30.0%
TTAACTAATGACATGTCCAT+GGG + contig557end:14597-14616 MsG0080048948.01.T01:intergenic 30.0%
TTGTTGGGTTAAATCAATGT+AGG + contig557end:14081-14100 MsG0080048948.01.T01:intergenic 30.0%
TTTGGTTATAGAATCCTATG+GGG + contig557end:12550-12569 MsG0080048948.01.T01:intergenic 30.0%
! ATGATGTATCATTTTCAGCA+TGG - contig557end:14790-14809 MsG0080048948.01.T01:exon 30.0%
! CAAAATCAGTTTTCATACAG+AGG - contig557end:13945-13964 MsG0080048948.01.T01:CDS 30.0%
! CTATATCTGGAATTTCATCT+TGG + contig557end:11176-11195 MsG0080048948.01.T01:intergenic 30.0%
! GAATTTCATTGGTAATTTGG+AGG - contig557end:10527-10546 MsG0080048948.01.T01:intron 30.0%
! GGCTTGTCAAATTTAAAACA+AGG - contig557end:10716-10735 MsG0080048948.01.T01:intron 30.0%
!! GAAATAGGAGTTTTAATACC+AGG - contig557end:10937-10956 MsG0080048948.01.T01:intron 30.0%
!! GAGTAAAAGTACTATCATTG+TGG + contig557end:11719-11738 MsG0080048948.01.T01:intergenic 30.0%
!! GGTATCATCTTTTGAAAATC+TGG - contig557end:13212-13231 MsG0080048948.01.T01:CDS 30.0%
!! TTAGGATTGGTTCAATTGAT+AGG - contig557end:15023-15042 MsG0080048948.01.T01:exon 30.0%
!! TTGGCTTTATTGTCATTAGA+TGG + contig557end:13255-13274 MsG0080048948.01.T01:intergenic 30.0%
!!! AGATTTTGGAATTCTCCTAT+TGG - contig557end:10121-10140 MsG0080048948.01.T01:exon 30.0%
!!! ATGTTTGGATTAGCGTATTT+TGG - contig557end:10790-10809 MsG0080048948.01.T01:CDS 30.0%
!!! ATTTTGACTGTACATCAGTT+AGG - contig557end:15005-15024 MsG0080048948.01.T01:exon 30.0%
!!! GATTTTGGAATTCTCCTATT+GGG - contig557end:10122-10141 MsG0080048948.01.T01:exon 30.0%
AAAAAATTAGCACTGTGAGG+CGG + contig557end:12724-12743 MsG0080048947.01.T01:intergenic 35.0%
AAAAAGTTCACAAACCTGGA+CGG + contig557end:12330-12349 MsG0080048947.01.T01:intergenic 35.0%
AAAGGAATAGAACTTCAACC+GGG + contig557end:10991-11010 MsG0080048947.01.T01:intergenic 35.0%
AATCATGCAACAAACACCAT+CGG + contig557end:10022-10041 MsG0080048948.01.T01:intergenic 35.0%
AGAAATGTTGCAAGATCAGT+AGG + contig557end:14368-14387 MsG0080048948.01.T01:intergenic 35.0%
AGCAAAAAATTAGCACTGTG+AGG + contig557end:12727-12746 MsG0080048948.01.T01:intergenic 35.0%
AGTGATTGAACAGCAATAAC+TGG + contig557end:10192-10211 MsG0080048948.01.T01:intergenic 35.0%
ATACTTCACCAGGAAGTAAA+TGG - contig557end:10353-10372 MsG0080048948.01.T01:intron 35.0%
ATCAGTCCCAAGATAAGAAA+TGG + contig557end:12637-12656 MsG0080048948.01.T01:intergenic 35.0%
ATTACAGTAGGCCTTAATTG+TGG - contig557end:15099-15118 MsG0080048948.01.T01:exon 35.0%
ATTGGAATAGCTGTTGAACT+TGG - contig557end:14740-14759 MsG0080048948.01.T01:exon 35.0%
ATTGGTGAAGCAATTGGATT+AGG - contig557end:12843-12862 MsG0080048948.01.T01:CDS 35.0%
CAACAAGAAAATCAGCATCA+AGG + contig557end:11913-11932 MsG0080048948.01.T01:intergenic 35.0%
CAACAATCAGGATGACAAAA+TGG + contig557end:13711-13730 MsG0080048948.01.T01:intergenic 35.0%
CAGCAATTGATTACTTGTCT+GGG - contig557end:12868-12887 MsG0080048948.01.T01:intron 35.0%
CAGTGTGCAATATCTCTAAT+AGG + contig557end:11815-11834 MsG0080048948.01.T01:intergenic 35.0%
CATCATGTTTCAAATGTGCT+TGG - contig557end:11243-11262 MsG0080048948.01.T01:intron 35.0%
CCTTAGTGTTGTAGAAATAG+AGG + contig557end:14894-14913 MsG0080048948.01.T01:intergenic 35.0%
CTATCATTGTGGAAAGTAAG+AGG + contig557end:11708-11727 MsG0080048948.01.T01:intergenic 35.0%
CTATTAGAGATATTGCACAC+TGG - contig557end:11813-11832 MsG0080048948.01.T01:intron 35.0%
GAAATGTTGCAAGATCAGTA+GGG + contig557end:14367-14386 MsG0080048948.01.T01:intergenic 35.0%
GAACAGGGAGATAAGTTAAA+CGG + contig557end:10250-10269 MsG0080048948.01.T01:intergenic 35.0%
GCATTGCAAGACTATTATGA+AGG - contig557end:10437-10456 MsG0080048948.01.T01:intron 35.0%
GTGATTGAACAGCAATAACT+GGG + contig557end:10191-10210 MsG0080048948.01.T01:intergenic 35.0%
GTTACAATTCAAACGTGCAT+CGG - contig557end:10459-10478 MsG0080048948.01.T01:intron 35.0%
TACTGATCTTGCAACATTTC+TGG - contig557end:14367-14386 MsG0080048948.01.T01:intron 35.0%
TACTTTACTATCCTCTTCTG+TGG - contig557end:13025-13044 MsG0080048948.01.T01:intron 35.0%
TAGGTCCTACTACTTTATGT+GGG - contig557end:14034-14053 MsG0080048948.01.T01:CDS 35.0%
TATAAGAATCCAATGCCTGT+AGG + contig557end:12040-12059 MsG0080048948.01.T01:intergenic 35.0%
TATTGGGTCTCAATATGCAT+AGG + contig557end:11586-11605 MsG0080048948.01.T01:intergenic 35.0%
TCAAAAGATGATACCCATGA+AGG + contig557end:13207-13226 MsG0080048948.01.T01:intergenic 35.0%
TCCCAAATATTCGCATCTAT+GGG - contig557end:14279-14298 MsG0080048948.01.T01:intron 35.0%
TGATTGAACAGCAATAACTG+GGG + contig557end:10190-10209 MsG0080048948.01.T01:intergenic 35.0%
TTAAGGCCTACTGTAATTAG+TGG + contig557end:15096-15115 MsG0080048948.01.T01:intergenic 35.0%
TTACAATTCAAACGTGCATC+GGG - contig557end:10460-10479 MsG0080048948.01.T01:intron 35.0%
TTACTTCCTGGTGAAGTATA+GGG + contig557end:10352-10371 MsG0080048948.01.T01:intergenic 35.0%
TTTACTTCCTGGTGAAGTAT+AGG + contig557end:10353-10372 MsG0080048948.01.T01:intergenic 35.0%
! AAATTTTCATAGGTCGAGCT+GGG - contig557end:14227-14246 MsG0080048948.01.T01:intron 35.0%
! ATTGATTACTTGTCTGGGAT+TGG - contig557end:12873-12892 MsG0080048948.01.T01:intron 35.0%
! CATGTTTGCTAAGTACTAGT+CGG + contig557end:11558-11577 MsG0080048948.01.T01:intergenic 35.0%
! CCCAAATTTTCGGTAGTAAT+TGG - contig557end:14722-14741 MsG0080048948.01.T01:exon 35.0%
! TTGATTACTTGTCTGGGATT+GGG - contig557end:12874-12893 MsG0080048948.01.T01:intron 35.0%
! TTTTCATACAGAGGATTGCT+AGG - contig557end:13954-13973 MsG0080048948.01.T01:CDS 35.0%
! TTTTGAGCTACTAATTGCCA+TGG + contig557end:11120-11139 MsG0080048948.01.T01:intergenic 35.0%
!! ACAGGCATTGGATTCTTATA+TGG - contig557end:12040-12059 MsG0080048948.01.T01:intron 35.0%
!! ATAGGAGTTTTAATACCAGG+AGG - contig557end:10940-10959 MsG0080048948.01.T01:intron 35.0%
!! ATTGGTATTTTGAACCCCAT+AGG - contig557end:12533-12552 MsG0080048948.01.T01:intron 35.0%
!! ATTTCAACTTGCTGCATGTT+TGG - contig557end:10775-10794 MsG0080048948.01.T01:CDS 35.0%
!! CCTCTATTTCTACAACACTA+AGG - contig557end:14891-14910 MsG0080048948.01.T01:exon 35.0%
!! CTATTTCTACAACACTAAGG+AGG - contig557end:14894-14913 MsG0080048948.01.T01:exon 35.0%
!! TGAAGCTTTTTCTCCTTCAT+GGG - contig557end:13191-13210 MsG0080048948.01.T01:intron 35.0%
!! TTAAGATTCGGAGAGTGTTA+AGG - contig557end:10886-10905 MsG0080048948.01.T01:intron 35.0%
!!! AAATGTTTTTAGGGTCACGT+TGG + contig557end:11610-11629 MsG0080048948.01.T01:intergenic 35.0%
!!! AATGTTTTTAGGGTCACGTT+GGG + contig557end:11609-11628 MsG0080048948.01.T01:intergenic 35.0%
AAAGAGGGAGAACTAAGAGT+TGG + contig557end:10305-10324 MsG0080048947.01.T01:intergenic 40.0%
AAAGCTTCAGCATCTACAGA+AGG + contig557end:13180-13199 MsG0080048947.01.T01:intergenic 40.0%
AACATGGTGCCTAAACAAAC+AGG + contig557end:12191-12210 MsG0080048947.01.T01:intergenic 40.0%
AACCTGTCTTACAGATGTGT+GGG - contig557end:12014-12033 MsG0080048948.01.T01:intron 40.0%
ACCTATAAAGTTAACCCAGC+AGG + contig557end:11336-11355 MsG0080048948.01.T01:intergenic 40.0%
ACGAGTATGAATCAGCTAGA+CGG - contig557end:10600-10619 MsG0080048948.01.T01:intron 40.0%
ACTCACCTCATACTCATGTA+TGG + contig557end:12907-12926 MsG0080048948.01.T01:intergenic 40.0%
AGAAAGCTGAAGAGGATCAA+TGG - contig557end:12435-12454 MsG0080048948.01.T01:intron 40.0%
AGGCATCCACTAATTACAGT+AGG - contig557end:15087-15106 MsG0080048948.01.T01:exon 40.0%
ATCATGCAACAAACACCATC+GGG + contig557end:10021-10040 MsG0080048948.01.T01:intergenic 40.0%
ATGAGATCAGCAAGAGGAAT+TGG + contig557end:15063-15082 MsG0080048948.01.T01:intergenic 40.0%
CAGAAGCTACAGAAAAGCAA+AGG + contig557end:11787-11806 MsG0080048948.01.T01:intergenic 40.0%
CAGCTCGACCTATGAAAATT+TGG + contig557end:14228-14247 MsG0080048948.01.T01:intergenic 40.0%
CAGTGAATTGAATTTCCCGA+TGG - contig557end:10003-10022 MsG0080048948.01.T01:exon 40.0%
CCTGAAACAAGCAAAAGATG+AGG + contig557end:12252-12271 MsG0080048948.01.T01:intergenic 40.0%
CTATCTATGAGATCAGCAAG+AGG + contig557end:15069-15088 MsG0080048948.01.T01:intergenic 40.0%
CTCTTGCTGATCTCATAGAT+AGG - contig557end:15067-15086 MsG0080048948.01.T01:exon 40.0%
CTGGTGAAGTATAGGGAAAT+GGG + contig557end:10345-10364 MsG0080048948.01.T01:intergenic 40.0%
CTTACCTAAAAATGGAGGCA+TGG + contig557end:12086-12105 MsG0080048948.01.T01:intergenic 40.0%
GAATAGCTGTTGAACTTGGT+TGG - contig557end:14744-14763 MsG0080048948.01.T01:exon 40.0%
GACTGTACATCAGTTAGGAT+TGG - contig557end:15010-15029 MsG0080048948.01.T01:exon 40.0%
GCAGCAATTGATTACTTGTC+TGG - contig557end:12867-12886 MsG0080048948.01.T01:intron 40.0%
GCCCATAGATGCGAATATTT+GGG + contig557end:14283-14302 MsG0080048948.01.T01:intergenic 40.0%
GTAGGTCCTACTACTTTATG+TGG - contig557end:14033-14052 MsG0080048948.01.T01:CDS 40.0%
GTCCCAAATATTCGCATCTA+TGG - contig557end:14278-14297 MsG0080048948.01.T01:intron 40.0%
TAATACCAGGAGGAGACATT+GGG - contig557end:10950-10969 MsG0080048948.01.T01:intron 40.0%
TACAATTCAAACGTGCATCG+GGG - contig557end:10461-10480 MsG0080048948.01.T01:intron 40.0%
TCAGCTTTCTTTCCTACACA+GGG + contig557end:12425-12444 MsG0080048948.01.T01:intergenic 40.0%
TGATCGTTGTCAATATCAGC+CGG - contig557end:12594-12613 MsG0080048948.01.T01:intron 40.0%
TGGCTCTTGATGTTAGTCAT+TGG - contig557end:12515-12534 MsG0080048948.01.T01:intron 40.0%
TGGGTACATACCTGTATGAA+AGG - contig557end:14246-14265 MsG0080048948.01.T01:intron 40.0%
TGGTGAAGTATAGGGAAATG+GGG + contig557end:10344-10363 MsG0080048948.01.T01:intergenic 40.0%
TGTAGGAAAGAAAGCTGAAG+AGG - contig557end:12427-12446 MsG0080048948.01.T01:intron 40.0%
TTAATACCAGGAGGAGACAT+TGG - contig557end:10949-10968 MsG0080048948.01.T01:intron 40.0%
TTATCTTGGGACTGATACTC+TGG - contig557end:12641-12660 MsG0080048948.01.T01:intron 40.0%
TTCAGCATCTACAGAAGGTA+TGG + contig557end:13175-13194 MsG0080048948.01.T01:intergenic 40.0%
TTCAGCTACTGCTTGATTGA+CGG + contig557end:10282-10301 MsG0080048948.01.T01:intergenic 40.0%
TTCAGCTTTCTTTCCTACAC+AGG + contig557end:12426-12445 MsG0080048948.01.T01:intergenic 40.0%
TTCCAGCCTCAAATCTAGTA+TGG + contig557end:12815-12834 MsG0080048948.01.T01:intergenic 40.0%
TTCTAATCATTTGGGAGCTG+TGG - contig557end:13406-13425 MsG0080048948.01.T01:intron 40.0%
TTGAATCAACGTTGCATCGA+GGG - contig557end:11395-11414 MsG0080048948.01.T01:intron 40.0%
TTGGAATTCTCCTATTGGGT+GGG - contig557end:10126-10145 MsG0080048948.01.T01:exon 40.0%
! AACTCTTAGTTCTCCCTCTT+TGG - contig557end:10304-10323 MsG0080048948.01.T01:CDS 40.0%
! ACTCTTAGTTCTCCCTCTTT+GGG - contig557end:10305-10324 MsG0080048948.01.T01:CDS 40.0%
! AGAATAAACCACAGGGTGTT+TGG + contig557end:13339-13358 MsG0080048948.01.T01:intergenic 40.0%
! AGGTCCAGCACTTTGAAAAT+GGG + contig557end:14061-14080 MsG0080048948.01.T01:intergenic 40.0%
! CAAATTTTCATAGGTCGAGC+TGG - contig557end:14226-14245 MsG0080048948.01.T01:intron 40.0%
! CATCTTTTGCTTGTTTCAGG+CGG - contig557end:12252-12271 MsG0080048948.01.T01:CDS 40.0%
! CCTCATCTTTTGCTTGTTTC+AGG - contig557end:12249-12268 MsG0080048948.01.T01:CDS 40.0%
! CTCGTTTGACTTCTTTCGAA+GGG + contig557end:14310-14329 MsG0080048948.01.T01:intergenic 40.0%
! GTATCATTTTCAGCATGGAG+TGG - contig557end:14795-14814 MsG0080048948.01.T01:exon 40.0%
! TACAGAAGGTATGGCATTTG+AGG + contig557end:13166-13185 MsG0080048948.01.T01:intergenic 40.0%
! TACCATACTAGATTTGAGGC+TGG - contig557end:12810-12829 MsG0080048948.01.T01:CDS 40.0%
! TAGGTCCAGCACTTTGAAAA+TGG + contig557end:14062-14081 MsG0080048948.01.T01:intergenic 40.0%
! TCGTTTGACTTCTTTCGAAG+GGG + contig557end:14309-14328 MsG0080048948.01.T01:intergenic 40.0%
! TCTTGTTGCTTCTTCTCACA+AGG - contig557end:11925-11944 MsG0080048948.01.T01:intron 40.0%
! TTTGGAATTCTCCTATTGGG+TGG - contig557end:10125-10144 MsG0080048948.01.T01:exon 40.0%
!! AGTAACTTGTTACACTGGTC+TGG + contig557end:11993-12012 MsG0080048948.01.T01:intergenic 40.0%
!! ATGATATACATTGGCTTGGG+TGG - contig557end:12382-12401 MsG0080048948.01.T01:intron 40.0%
!! CTGAAGCTTTTTCTCCTTCA+TGG - contig557end:13190-13209 MsG0080048948.01.T01:intron 40.0%
!! GGTTCAGTAACTTGTTACAC+TGG + contig557end:11998-12017 MsG0080048948.01.T01:intergenic 40.0%
!! GTTTTGAGCCATTTACTTCC+TGG + contig557end:10364-10383 MsG0080048948.01.T01:intergenic 40.0%
!! TCTTCCATGCCTCCATTTTT+AGG - contig557end:12079-12098 MsG0080048948.01.T01:intron 40.0%
!!! GTTTTGACTTAACGGTCTTC+TGG - contig557end:11354-11373 MsG0080048948.01.T01:intron 40.0%
AACAATTGGGGGCTGAAATG+AGG + contig557end:11663-11682 MsG0080048947.01.T01:intergenic 45.0%
AACCCCTCCATCGGTATTTA+GGG - contig557end:14845-14864 MsG0080048948.01.T01:exon 45.0%
AAGTATAGGGAAATGGGGTC+TGG + contig557end:10339-10358 MsG0080048948.01.T01:intergenic 45.0%
AATACCAGGAGGAGACATTG+GGG - contig557end:10951-10970 MsG0080048948.01.T01:intron 45.0%
ACAGGTTTGATTCCCTGTGT+AGG - contig557end:12410-12429 MsG0080048948.01.T01:intron 45.0%
AGAAGTTGACCGTGTCATGA+AGG + contig557end:14942-14961 MsG0080048948.01.T01:intergenic 45.0%
AGGCGGAGAAAAATGACTGT+AGG + contig557end:12707-12726 MsG0080048948.01.T01:intergenic 45.0%
ATATTGCACACTGGGCACAT+GGG - contig557end:11822-11841 MsG0080048948.01.T01:intron 45.0%
ATCACAGCGCAATTGTTCCA+TGG - contig557end:11100-11119 MsG0080048948.01.T01:intron 45.0%
ATCGGGGCATACATTACTTG+AGG - contig557end:10477-10496 MsG0080048948.01.T01:intron 45.0%
ATCGTTGTCAATATCAGCCG+GGG - contig557end:12596-12615 MsG0080048948.01.T01:intron 45.0%
ATGAGATGTCACCACAGAAG+AGG + contig557end:13039-13058 MsG0080048948.01.T01:intergenic 45.0%
CAAGCAAAAGATGAGGTTGC+CGG + contig557end:12245-12264 MsG0080048948.01.T01:intergenic 45.0%
CAGGGAGATAAGTTAAACGG+CGG + contig557end:10247-10266 MsG0080048948.01.T01:intergenic 45.0%
CATTGACCCCTAAATACCGA+TGG + contig557end:14855-14874 MsG0080048948.01.T01:intergenic 45.0%
CCAATTGCTTCACCAATAGC+TGG + contig557end:12840-12859 MsG0080048948.01.T01:intergenic 45.0%
CCAGCTATTGGTGAAGCAAT+TGG - contig557end:12837-12856 MsG0080048948.01.T01:CDS 45.0%
CCATTTCCCTATACTTCACC+AGG - contig557end:10343-10362 MsG0080048948.01.T01:intron 45.0%
CCTGGTGAAGTATAGGGAAA+TGG + contig557end:10346-10365 MsG0080048948.01.T01:intergenic 45.0%
CTGACAGAAGCCTTTCATAC+AGG + contig557end:14259-14278 MsG0080048948.01.T01:intergenic 45.0%
CTTGAATCAACGTTGCATCG+AGG - contig557end:11394-11413 MsG0080048948.01.T01:intron 45.0%
GAACCTGTCTTACAGATGTG+TGG - contig557end:12013-12032 MsG0080048948.01.T01:intron 45.0%
GAAGTTGACCGTGTCATGAA+GGG + contig557end:14941-14960 MsG0080048948.01.T01:intergenic 45.0%
GATCGTTGTCAATATCAGCC+GGG - contig557end:12595-12614 MsG0080048948.01.T01:intron 45.0%
GCAAGCCATACATGAGTATG+AGG - contig557end:12899-12918 MsG0080048948.01.T01:intron 45.0%
GCCTGCTGGGTTAACTTTAT+AGG - contig557end:11332-11351 MsG0080048948.01.T01:intron 45.0%
GGCCCATAGATGCGAATATT+TGG + contig557end:14284-14303 MsG0080048948.01.T01:intergenic 45.0%
GTATGAATCAGCTAGACGGA+AGG - contig557end:10604-10623 MsG0080048948.01.T01:intron 45.0%
GTCAAAGATATCTGCCTGCT+GGG - contig557end:11319-11338 MsG0080048948.01.T01:intron 45.0%
TAAATACCGATGGAGGGGTT+GGG + contig557end:14845-14864 MsG0080048948.01.T01:intergenic 45.0%
TAACTGGGGCTTGGAAGTTT+CGG + contig557end:10176-10195 MsG0080048948.01.T01:intergenic 45.0%
TATCCATGCCCTTCATGACA+CGG - contig557end:14930-14949 MsG0080048948.01.T01:exon 45.0%
TCAATATCAGCCGGGGAAAA+AGG - contig557end:12603-12622 MsG0080048948.01.T01:intron 45.0%
TCAGCCCCCAATTGTTTCAA+TGG - contig557end:11667-11686 MsG0080048948.01.T01:intron 45.0%
TGAACATCAACCACCATGTG+TGG + contig557end:11887-11906 MsG0080048948.01.T01:intergenic 45.0%
TGACTAACATCAAGAGCCAG+AGG + contig557end:12514-12533 MsG0080048948.01.T01:intergenic 45.0%
TGCTTGGTATGTTTCTCGTC+AGG - contig557end:11259-11278 MsG0080048948.01.T01:intron 45.0%
TGGGTCCCACATAAAGTAGT+AGG + contig557end:14042-14061 MsG0080048948.01.T01:intergenic 45.0%
TGTCAAAGATATCTGCCTGC+TGG - contig557end:11318-11337 MsG0080048948.01.T01:intron 45.0%
TTAGGGTCACGTTGGGTATT+GGG + contig557end:11602-11621 MsG0080048948.01.T01:intergenic 45.0%
! AAAATGGAGGCATGGAAGAC+AGG + contig557end:12078-12097 MsG0080048948.01.T01:intergenic 45.0%
! AGCTGATTCATACTCGTCTG+TGG + contig557end:10597-10616 MsG0080048948.01.T01:intergenic 45.0%
! GCTCGTTTGACTTCTTTCGA+AGG + contig557end:14311-14330 MsG0080048948.01.T01:intergenic 45.0%
! GGAAACTCTTCCTTTTTCCC+CGG + contig557end:12616-12635 MsG0080048948.01.T01:intergenic 45.0%
! TGCAACATTTCTGGACCAAC+AGG - contig557end:14376-14395 MsG0080048948.01.T01:intron 45.0%
! TGTTACACTGGTCTGGAATC+TGG + contig557end:11986-12005 MsG0080048948.01.T01:intergenic 45.0%
! TTTAGGGTCACGTTGGGTAT+TGG + contig557end:11603-11622 MsG0080048948.01.T01:intergenic 45.0%
!! ATATACATTGGCTTGGGTGG+AGG - contig557end:12385-12404 MsG0080048948.01.T01:intron 45.0%
AAGTTCACAAACCTGGACGG+AGG + contig557end:12327-12346 MsG0080048948.01.T01:intergenic 50.0%
AATGCCTTCACAACAGCTGC+AGG + contig557end:10422-10441 MsG0080048948.01.T01:intergenic 50.0%
ACCACATCACGTGTCAGACT+TGG - contig557end:10218-10237 MsG0080048948.01.T01:CDS 50.0%
ACCCCTAAATACCGATGGAG+GGG + contig557end:14850-14869 MsG0080048948.01.T01:intergenic 50.0%
ACCCCTCCATCGGTATTTAG+GGG - contig557end:14846-14865 MsG0080048948.01.T01:exon 50.0%
ATACCAGGAGGAGACATTGG+GGG - contig557end:10952-10971 MsG0080048948.01.T01:intron 50.0%
ATTGGGTGGGTGGTTAGCAA+TGG - contig557end:10139-10158 MsG0080048948.01.T01:exon 50.0%
CAACCCCTCCATCGGTATTT+AGG - contig557end:14844-14863 MsG0080048948.01.T01:exon 50.0%
CATGCAGTTGAGTCACTTCC+AGG - contig557end:13300-13319 MsG0080048948.01.T01:CDS 50.0%
CATGGAGTGGCAATCAGATC+AGG - contig557end:14808-14827 MsG0080048948.01.T01:exon 50.0%
CGTTTCTCCTTCACTTCCTC+TGG - contig557end:12495-12514 MsG0080048948.01.T01:intron 50.0%
CTAAATACCGATGGAGGGGT+TGG + contig557end:14846-14865 MsG0080048948.01.T01:intergenic 50.0%
GAACAGCAATAACTGGGGCT+TGG + contig557end:10185-10204 MsG0080048948.01.T01:intergenic 50.0%
GAATTCTCCTATTGGGTGGG+TGG - contig557end:10129-10148 MsG0080048948.01.T01:exon 50.0%
GACCCCTAAATACCGATGGA+GGG + contig557end:14851-14870 MsG0080048948.01.T01:intergenic 50.0%
GATATTGCACACTGGGCACA+TGG - contig557end:11821-11840 MsG0080048948.01.T01:intron 50.0%
GGGGGTTCTCTTTAATCACC+CGG - contig557end:10970-10989 MsG0080048948.01.T01:intron 50.0%
TATTGCACACTGGGCACATG+GGG - contig557end:11823-11842 MsG0080048948.01.T01:intron 50.0%
TCAAGAGCCAGAGGAAGTGA+AGG + contig557end:12505-12524 MsG0080048948.01.T01:intergenic 50.0%
TCTGACACGTGATGTGGTTC+TGG + contig557end:10216-10235 MsG0080048948.01.T01:intergenic 50.0%
TCTTGGGACTGATACTCTGG+TGG - contig557end:12644-12663 MsG0080048948.01.T01:intron 50.0%
TGACCCCTAAATACCGATGG+AGG + contig557end:14852-14871 MsG0080048948.01.T01:intergenic 50.0%
TTACAGATGTGTGGGCCTAC+AGG - contig557end:12022-12041 MsG0080048948.01.T01:intron 50.0%
TTGACTTCTTTCGAAGGGGC+TGG + contig557end:14305-14324 MsG0080048948.01.T01:intergenic 50.0%
TTGCTAACCACCCACCCAAT+AGG + contig557end:10139-10158 MsG0080048948.01.T01:intergenic 50.0%
! CATTGAAGGGCACAGAGACT+AGG + contig557end:13826-13845 MsG0080048948.01.T01:intergenic 50.0%
! CTTTTGCTTGTTTCAGGCGG+TGG - contig557end:12255-12274 MsG0080048948.01.T01:CDS 50.0%
! GGGACCCATTTTCAAAGTGC+TGG - contig557end:14054-14073 MsG0080048948.01.T01:intron 50.0%
! TGACGGTTGATGCACGAACA+GGG + contig557end:10265-10284 MsG0080048948.01.T01:intergenic 50.0%
! TTGACGGTTGATGCACGAAC+AGG + contig557end:10266-10285 MsG0080048948.01.T01:intergenic 50.0%
!! TTTGGCTCTCGGATATGTCC+TGG + contig557end:13321-13340 MsG0080048948.01.T01:intergenic 50.0%
ATGTGTGGGCCTACAGGCAT+TGG - contig557end:12028-12047 MsG0080048948.01.T01:intron 55.0%
ATTGTGCCCAACCCCTCCAT+CGG - contig557end:14836-14855 MsG0080048948.01.T01:exon 55.0%
CACAAACCTGGACGGAGGTT+CGG + contig557end:12322-12341 MsG0080048948.01.T01:intergenic 55.0%
CATGTGTGGAACACTCTGGC+AGG + contig557end:11873-11892 MsG0080048948.01.T01:intergenic 55.0%
CCACCATGTGTGGAACACTC+TGG + contig557end:11877-11896 MsG0080048948.01.T01:intergenic 55.0%
GAAGCCTGCAGCTGTTGTGA+AGG - contig557end:10415-10434 MsG0080048948.01.T01:intron 55.0%
GAGGCTGGAACACCAGCTAT+TGG - contig557end:12825-12844 MsG0080048948.01.T01:CDS 55.0%
GCCAAGTCTGACACGTGATG+TGG + contig557end:10222-10241 MsG0080048948.01.T01:intergenic 55.0%
GGCCCACACATCTGTAAGAC+AGG + contig557end:12019-12038 MsG0080048948.01.T01:intergenic 55.0%
TGACCGTGTCATGAAGGGCA+TGG + contig557end:14936-14955 MsG0080048948.01.T01:intergenic 55.0%
! ATGGAGGCATGGAAGACAGG+AGG + contig557end:12075-12094 MsG0080048948.01.T01:intergenic 55.0%
! CCAGAGTGTTCCACACATGG+TGG - contig557end:11874-11893 MsG0080048948.01.T01:intron 55.0%
! CTGCCAGAGTGTTCCACACA+TGG - contig557end:11871-11890 MsG0080048948.01.T01:intron 55.0%
! CTGGTAGTGTGGCCCAAAGA+GGG + contig557end:10320-10339 MsG0080048948.01.T01:intergenic 55.0%
! GGAAATGGGGTCTGGTAGTG+TGG + contig557end:10331-10350 MsG0080048948.01.T01:intergenic 55.0%
! TCTGGTAGTGTGGCCCAAAG+AGG + contig557end:10321-10340 MsG0080048948.01.T01:intergenic 55.0%
!! ACCACAGGGTGTTTGGCTCT+CGG + contig557end:13332-13351 MsG0080048948.01.T01:intergenic 55.0%
CTTATGCCGAACCTCCGTCC+AGG - contig557end:12313-12332 MsG0080048948.01.T01:intron 60.0%
GAACCCCCAATGTCTCCTCC+TGG + contig557end:10958-10977 MsG0080048948.01.T01:intergenic 60.0%
GATGGAGGGGTTGGGCACAA+TGG + contig557end:14837-14856 MsG0080048948.01.T01:intergenic 60.0%
TCCGAGAGCCAAACACCCTG+TGG - contig557end:13328-13347 MsG0080048948.01.T01:intron 60.0%
!! TTGGCTTGGGTGGAGGTCAC+AGG - contig557end:12392-12411 MsG0080048948.01.T01:intron 60.0%
GCACACTGGGCACATGGGGT+TGG - contig557end:11827-11846 MsG0080048948.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
contig557end gene 10001 15141 10001 ID=MsG0080048948.01;
contig557end mRNA 10001 15141 10001 ID=MsG0080048948.01.T01;Parent=MsG0080048948.01
contig557end exon 10001 10334 10001 ID=MsG0080048948.01.T01.exon;Parent=MsG0080048948.01.T01
contig557end CDS 10164 10334 10164 ID=MsG0080048948.01.T01.cds;Parent=MsG0080048948.01.T01
contig557end CDS 10745 10903 10745 ID=MsG0080048948.01.T01.cds;Parent=MsG0080048948.01.T01
contig557end exon 10745 10903 10745 ID=MsG0080048948.01.T01.exon;Parent=MsG0080048948.01.T01
contig557end CDS 12222 12321 12222 ID=MsG0080048948.01.T01.cds;Parent=MsG0080048948.01.T01
contig557end exon 12222 12321 12222 ID=MsG0080048948.01.T01.exon;Parent=MsG0080048948.01.T01
contig557end CDS 12808 12871 12808 ID=MsG0080048948.01.T01.cds;Parent=MsG0080048948.01.T01
contig557end exon 12808 12871 12808 ID=MsG0080048948.01.T01.exon;Parent=MsG0080048948.01.T01
contig557end CDS 13042 13114 13042 ID=MsG0080048948.01.T01.cds;Parent=MsG0080048948.01.T01
contig557end exon 13042 13114 13042 ID=MsG0080048948.01.T01.exon;Parent=MsG0080048948.01.T01
contig557end CDS 13196 13341 13196 ID=MsG0080048948.01.T01.cds;Parent=MsG0080048948.01.T01
contig557end exon 13196 13341 13196 ID=MsG0080048948.01.T01.exon;Parent=MsG0080048948.01.T01
contig557end CDS 13878 14064 13878 ID=MsG0080048948.01.T01.cds;Parent=MsG0080048948.01.T01
contig557end exon 13878 14064 13878 ID=MsG0080048948.01.T01.exon;Parent=MsG0080048948.01.T01
contig557end CDS 14397 14556 14397 ID=MsG0080048948.01.T01.cds;Parent=MsG0080048948.01.T01
contig557end exon 14397 14556 14397 ID=MsG0080048948.01.T01.exon;Parent=MsG0080048948.01.T01
contig557end CDS 14644 14984 14644 ID=MsG0080048948.01.T01.cds;Parent=MsG0080048948.01.T01
contig557end exon 14644 15141 14644 ID=MsG0080048948.01.T01.exon;Parent=MsG0080048948.01.T01
Gene Sequence

>MsG0080048948.01.T01

ATGGAAGTTTTGCTGCCGAAACTTCCAAGCCCCAGTTATTGCTGTTCAATCACTACCAGAACCACATCACGTGTCAGACTTGGCTTCCGCCGTTTAACTTATCTCCCTGTTCGTGCATCAACCGTCAATCAAGCAGTAGCTGAACCAACTCTTAGTTCTCCCTCTTTGGGCCACACTACCAGACCCCATTTCCCTATACTTCACCAGGAAGTAAATGGCTCAAAACTTGTTTACATAGACAATGCAGCAACGTCTCAGAAGCCTGCAGCTGTTGTGAAGGCATTGCAAGACTATTATGAAGGTTACAATTCAAACGTGCATCGGGGCATACATTACTTGAGTGCAAAGGCCACAGACGAGTATGAATCAGCTAGACGGAAGGTTGCAGCTTTTATAAATGCTTCTGATTCACGAGAAATTGTATTCACAAGAAATGCTACTGAAGCTATCAATCTAATAGCTTATTCTTGGGGCTTGTCAAATTTAAAACAAGGAGATGAGATCGTACTTACAGTTGCTGAACATCACAGCGCAATTGTTCCATGGCAATTAGTAGCTCAAAAAGTTGGAGCTGTTTTGAAATTTGTGAATTTAAACCAAGATGAAATTCCAGATATAGACAAATTGAAGGAAATGCTTTCAAAGAAGACAAAAATAGTTGTTGTTCATCATGTTTCAAATGTGCTTGCTTCTGTTCTTCCTATTAGAGATATTGCACACTGGGCACATGGGGTTGGAGCAAAAGTTCTTGTAGATGCCTGCCAGAGTGTTCCACACATGGTGGTTGATGTTCAAAACCTTGATGCTGATTTTCTTGTTGCTTCTTCTCACAAGATGTGTGGGCCTACAGGCATTGGATTCTTATATGGTAAAATGGACCTCCTGTCTTCCATGCCTCCATTTTTAGGCGGTGGTGAAATGATTTCAGATGTATATTTGGATCATTCAACTTATGCCGAACCTCCGTCCAGATTTGAGGCTGGAACACCAGCTATTGGTGAAGCAATTGGATTAGGAGCAGCAATTGATTACTTGTCTGGGATTGGGATGCAAGCCATACATGAGTATGAGGTCGAGCTGGGTACATACCTGTATGAAAGGCTTCTGTCAGTCCCAAATATTCGCATCTATGGGCCAGCCCCTTCGAAAGAAGTCAAACGAGCTTCTCTTTGTTCTTTCAATGTTGAGAATTTGCACCCTACTGATCTTGCAACATTTCTGGACCAACAGCATGGAGTGGCAATCAGATCAGGTCACCATTGTGCCCAACCCCTCCATCGGTATTTAGGGGTCAATGCAAGCGCACGTGCTAGCCTCTATTTCTACAACACTAAGGAGGATGTCGACAACTTTATCCATGCCCTTCATGACACGGTCAACTTCTTCAATTCATTCAAGTAG

Protein sequence

>MsG0080048948.01.T01

MEVLLPKLPSPSYCCSITTRTTSRVRLGFRRLTYLPVRASTVNQAVAEPTLSSPSLGHTTRPHFPILHQEVNGSKLVYIDNAATSQKPAAVVKALQDYYEGYNSNVHRGIHYLSAKATDEYESARRKVAAFINASDSREIVFTRNATEAINLIAYSWGLSNLKQGDEIVLTVAEHHSAIVPWQLVAQKVGAVLKFVNLNQDEIPDIDKLKEMLSKKTKIVVVHHVSNVLASVLPIRDIAHWAHGVGAKVLVDACQSVPHMVVDVQNLDADFLVASSHKMCGPTGIGFLYGKMDLLSSMPPFLGGGEMISDVYLDHSTYAEPPSRFEAGTPAIGEAIGLGAAIDYLSGIGMQAIHEYEVELGTYLYERLLSVPNIRIYGPAPSKEVKRASLCSFNVENLHPTDLATFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEDVDNFIHALHDTVNFFNSFK*