AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039628.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039628.01.T01 MTR_7g076310 97.507 361 6 2 1 359 1 360 0.0 715
MsG0780039628.01.T01 MTR_7g076310 90.859 361 6 3 1 359 1 336 0.0 629
MsG0780039628.01.T01 MTR_7g076310 96.639 238 5 2 124 359 1 237 1.50e-163 457
MsG0780039628.01.T01 MTR_5g038900 24.430 307 201 9 27 310 17 315 9.24e-17 80.5
MsG0780039628.01.T01 MTR_2g096300 24.576 236 168 4 103 331 114 346 4.94e-14 72.8
MsG0780039628.01.T01 MTR_4g063040 26.160 237 163 6 103 331 115 347 5.17e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039628.01.T01 AT4G23010 78.431 357 64 1 3 359 2 345 0.0 557
MsG0780039628.01.T01 AT1G12600 78.492 358 65 2 2 359 4 349 0.0 554
MsG0780039628.01.T01 AT4G23010 74.866 374 64 2 3 359 2 362 0.0 547
MsG0780039628.01.T01 AT4G23010 69.307 404 64 2 3 359 2 392 0.0 535
MsG0780039628.01.T01 AT1G14360 24.316 329 212 10 27 332 17 331 3.24e-16 79.0
MsG0780039628.01.T01 AT2G02810 26.199 271 175 8 26 276 16 281 1.38e-15 77.4
MsG0780039628.01.T01 AT3G46180 24.430 307 190 10 66 347 57 346 1.17e-13 71.6
MsG0780039628.01.T01 AT5G59740 26.545 275 170 9 66 315 56 323 5.38e-13 69.7

Find 88 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCCATGTTGTTCTGTTAA+TGG 0.102094 7:-66923727 None:intergenic
TTCTTTGGATATCTTGTTAA+TGG 0.171694 7:+66920642 MsG0780039628.01.T01:CDS
CTGTTTCTGATTTACCTTAA+TGG 0.191716 7:+66921289 MsG0780039628.01.T01:CDS
GAAGCAATGGCTACATTTAT+AGG 0.201415 7:+66923045 MsG0780039628.01.T01:CDS
GTCTCTCTGAGAAGTATTTA+AGG 0.206804 7:-66923824 None:intergenic
TGTACTTACAATGGAATTTA+AGG 0.254815 7:-66920268 None:intergenic
TGTTCGTCTGGATTCTTCTT+TGG 0.266789 7:+66920627 MsG0780039628.01.T01:CDS
GCTTGCTTGTGAAACCATTA+AGG 0.274635 7:-66921303 None:intergenic
CAATTTCTCATTTGTTCGTC+TGG 0.276606 7:+66920615 MsG0780039628.01.T01:CDS
TGGCTTAACAAAGGGTTCTT+TGG 0.276678 7:+66921384 MsG0780039628.01.T01:CDS
TTCAGGAATATGTGTATAAC+AGG 0.287196 7:+66921104 MsG0780039628.01.T01:intron
GATAACCGGTGCTTTGGTTA+TGG 0.297053 7:+66922240 MsG0780039628.01.T01:CDS
CTGTAGTGGCAGCACCAAAA+AGG 0.297504 7:-66923095 None:intergenic
GTTTGCTTAGACTAATAAAA+AGG 0.311266 7:+66920357 MsG0780039628.01.T01:five_prime_UTR
ACACCAACAACACTGAAATT+AGG 0.324279 7:-66922211 None:intergenic
TCTTCTCAGACCAGGAATAA+AGG 0.336739 7:-66922104 None:intergenic
ATAATGGGTGCCTTTATTCC+TGG 0.337021 7:+66922094 MsG0780039628.01.T01:CDS
TTGATCACCTGTGTGGTATC+AGG 0.339457 7:-66922307 None:intergenic
TTAGCTTAAAATGCTTCTAA+TGG 0.341063 7:+66920439 MsG0780039628.01.T01:five_prime_UTR
GAACAGGGTCGTAGTTTGTT+TGG 0.348804 7:+66920561 MsG0780039628.01.T01:CDS
GAAGAGTTGGGAACATTTCA+TGG 0.354101 7:+66923874 MsG0780039628.01.T01:CDS
GAAGTATTTAAGGCTCTCTT+AGG 0.362841 7:-66923814 None:intergenic
AAAGATGAAGAAAGAAGAAC+AGG 0.380383 7:+66920545 MsG0780039628.01.T01:exon
GAAGCTTTCTGCTGTACTAA+TGG 0.381721 7:+66921354 MsG0780039628.01.T01:CDS
AATGAGAAATTGTTGCCATC+TGG 0.389074 7:-66920604 None:intergenic
GTGCGTCTGCTAGTGTAAAT+AGG 0.391821 7:-66922180 None:intergenic
TCACCTAATTTCAGTGTTGT+TGG 0.400864 7:+66922208 MsG0780039628.01.T01:CDS
TCTGCAATACTCTTGGTAGT+TGG 0.425608 7:+66922151 MsG0780039628.01.T01:CDS
GTTGGTGTTGTTATGATAAC+CGG 0.429713 7:+66922226 MsG0780039628.01.T01:CDS
TTTCTTGTTTCAGCTATGGT+TGG 0.441806 7:+66921236 MsG0780039628.01.T01:intron
CATTAAGGTAAATCAGAAAC+AGG 0.449175 7:-66921288 None:intergenic
ATGAGAAATTGTTGCCATCT+GGG 0.449700 7:-66920603 None:intergenic
TTGCAGCATCCCTACGTGTA+TGG 0.451909 7:+66923009 MsG0780039628.01.T01:intron
TACTACTGTTGATGAAGAGT+TGG 0.452829 7:+66923861 MsG0780039628.01.T01:CDS
GGTTCTGCCAGTGATGATAA+TGG 0.453653 7:+66922078 MsG0780039628.01.T01:intron
TGGTACTTCACATTTATTCA+AGG 0.453873 7:+66921256 MsG0780039628.01.T01:CDS
TGAAAGGAGGCCCTTGGTCT+AGG 0.454515 7:+66923918 MsG0780039628.01.T01:CDS
GATTTAAACATAATCTGTGC+AGG 0.457212 7:-66921421 None:intergenic
GCAGATATATACTCATGTAT+TGG 0.466873 7:-66922133 None:intergenic
AAGCTTTCTGCTGTACTAAT+GGG 0.468608 7:+66921355 MsG0780039628.01.T01:CDS
AAGGCTCTCTTAGGTATGGC+AGG 0.469356 7:-66923805 None:intergenic
TGTTATGATAACCGGTGCTT+TGG 0.471959 7:+66922234 MsG0780039628.01.T01:CDS
CTCTTCTGCTCTACAGTAGT+GGG 0.478965 7:+66922830 MsG0780039628.01.T01:CDS
GGAACATTTCATGGTTCTGT+AGG 0.482180 7:+66923883 MsG0780039628.01.T01:CDS
TGGTTTCACAAGCAAGCAAA+TGG 0.484985 7:+66921309 MsG0780039628.01.T01:CDS
ACAGATAACAACAGCAAGAA+AGG 0.486312 7:+66923666 MsG0780039628.01.T01:intron
GTTGGTTTCAAATTGGTGAA+TGG 0.498923 7:+66920516 MsG0780039628.01.T01:five_prime_UTR
CAGGAGAATTATTCAAAGCA+TGG 0.503301 7:+66922885 MsG0780039628.01.T01:CDS
ATTTAAGGCTCTCTTAGGTA+TGG 0.516737 7:-66923809 None:intergenic
AGCACAGGTGGGATTAAGAA+AGG 0.520945 7:-66922857 None:intergenic
ACTACTGTTGATGAAGAGTT+GGG 0.528240 7:+66923862 MsG0780039628.01.T01:CDS
GTATATATCTGCAATACTCT+TGG 0.531600 7:+66922144 MsG0780039628.01.T01:CDS
TGTATTAGTATTTGAAGCAA+TGG 0.532065 7:+66923032 MsG0780039628.01.T01:CDS
GGTACTTCACATTTATTCAA+GGG 0.532918 7:+66921257 MsG0780039628.01.T01:CDS
GTTCTGCCAGTGATGATAAT+GGG 0.533555 7:+66922079 MsG0780039628.01.T01:CDS
TTAGGGAGAGGACTGAAACT+TGG 0.534675 7:-66923068 None:intergenic
TAAATTTACCATGGCTGTAG+TGG 0.534678 7:-66923109 None:intergenic
TGGTGCTGCCACTACAGCCA+TGG 0.543212 7:+66923101 MsG0780039628.01.T01:CDS
GGATCACATGGCTTAACAAA+GGG 0.550447 7:+66921376 MsG0780039628.01.T01:CDS
AGCATGGACTTCATGTTCAC+AGG 0.552121 7:+66922901 MsG0780039628.01.T01:CDS
AAGGCACCCATTATCATCAC+TGG 0.553179 7:-66922085 None:intergenic
TAGGTGAAGAAGATGATGAA+AGG 0.558799 7:+66923902 MsG0780039628.01.T01:CDS
TTTACATACTTCAAAATGTG+TGG 0.560949 7:+66924103 MsG0780039628.01.T01:three_prime_UTR
GAATTTGTGTGTACTTACAA+TGG 0.568400 7:-66920277 None:intergenic
TGGACTAATACTCATAGCCA+TGG 0.572276 7:+66923750 MsG0780039628.01.T01:CDS
AGATGATGAAAGGAGGCCCT+TGG 0.573444 7:+66923912 MsG0780039628.01.T01:CDS
GCAAGCAAATGGTGAACCCA+TGG 0.573890 7:+66921320 MsG0780039628.01.T01:CDS
GCTCTTCTGCTCTACAGTAG+TGG 0.575505 7:+66922829 MsG0780039628.01.T01:CDS
AGAATCCATAACCAAAGCAC+CGG 0.588172 7:-66922245 None:intergenic
GGGATCACATGGCTTAACAA+AGG 0.604916 7:+66921375 MsG0780039628.01.T01:CDS
TATCATTCAACCTAGACCAA+GGG 0.609666 7:-66923928 None:intergenic
ACTAATACACCATACACGTA+GGG 0.615564 7:-66923018 None:intergenic
TTAACAGAACAACATGGGAG+TGG 0.616464 7:+66923730 MsG0780039628.01.T01:CDS
CATCTTCAATGTGATTCCCA+TGG 0.618460 7:-66923767 None:intergenic
TTATCATTCAACCTAGACCA+AGG 0.621202 7:-66923929 None:intergenic
GGACTAATACTCATAGCCAT+GGG 0.638915 7:+66923751 MsG0780039628.01.T01:CDS
AACCATTAACAGAACAACAT+GGG 0.639193 7:+66923725 MsG0780039628.01.T01:CDS
ATTTAAACATAATCTGTGCA+GGG 0.643855 7:-66921420 None:intergenic
CACTCTCTGATAGACCCAGA+TGG 0.644417 7:+66920589 MsG0780039628.01.T01:CDS
AAACCATTAACAGAACAACA+TGG 0.655932 7:+66923724 MsG0780039628.01.T01:CDS
GCTGTACTAATGGGATCACA+TGG 0.662812 7:+66921364 MsG0780039628.01.T01:CDS
GATTATGTTTAAATCCACAA+AGG 0.671381 7:+66921429 MsG0780039628.01.T01:CDS
GTGAAGAAGATGATGAAAGG+AGG 0.673119 7:+66923905 MsG0780039628.01.T01:CDS
TACTAATACACCATACACGT+AGG 0.688815 7:-66923019 None:intergenic
TATGAATCCTGATACCACAC+AGG 0.699516 7:+66922300 MsG0780039628.01.T01:CDS
AAGATGAAGAAAGAAGAACA+GGG 0.718452 7:+66920546 MsG0780039628.01.T01:exon
TCTTGTTAATGGTATCTGTG+AGG 0.723438 7:+66920653 MsG0780039628.01.T01:CDS
TGGAAAATTGATCACCTGTG+TGG 0.787285 7:-66922314 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTTGGATTTATTATAT+TGG - Chr7:66922050-66922069 None:intergenic 10.0%
!! AAATTAATCATATATTTGTT+GGG - Chr7:66922366-66922385 None:intergenic 10.0%
!! AGTTAAATCATTAATTTAAT+TGG + Chr7:66923542-66923561 MsG0780039628.01.T01:intron 10.0%
!! TAAATTAATCATATATTTGT+TGG - Chr7:66922367-66922386 None:intergenic 10.0%
!!! AAATGAATTTTATATCTAAA+AGG - Chr7:66924086-66924105 None:intergenic 10.0%
!!! ATATATGAAGTTTTTTTTTA+TGG + Chr7:66920934-66920953 MsG0780039628.01.T01:intron 10.0%
!! ATTCAAATTAATCACAAATT+CGG - Chr7:66922392-66922411 None:intergenic 15.0%
!! TTAATACTAATATATGCAAA+AGG - Chr7:66923267-66923286 None:intergenic 15.0%
!!! AAATCCAAATTTTATGTTAT+AGG + Chr7:66922057-66922076 MsG0780039628.01.T01:intron 15.0%
!!! AAGTATAAGAATTTTAAATG+CGG - Chr7:66922784-66922803 None:intergenic 15.0%
!!! ATATATTAGTTTAGACAAAA+AGG - Chr7:66922947-66922966 None:intergenic 15.0%
!!! TTTTCATATCATGTTATTAA+AGG + Chr7:66924011-66924030 MsG0780039628.01.T01:three_prime_UTR 15.0%
!!! TTTTTACTGAATTGAATTTT+GGG + Chr7:66920494-66920513 MsG0780039628.01.T01:five_prime_UTR 15.0%
!! ACTAAAGATTAAATCATTGA+CGG + Chr7:66923364-66923383 MsG0780039628.01.T01:intron 20.0%
!! AGAACCTATAACATAAAATT+TGG - Chr7:66922064-66922083 None:intergenic 20.0%
!! TACAAAATATTGTGAAATAG+TGG + Chr7:66921754-66921773 MsG0780039628.01.T01:intron 20.0%
!! TAGTTAAAGTAGAATCAAAT+AGG - Chr7:66923405-66923424 None:intergenic 20.0%
!!! ATACTAGTATTTTATATGCA+TGG - Chr7:66920335-66920354 None:intergenic 20.0%
!!! CTTTTTACTGAATTGAATTT+TGG + Chr7:66920493-66920512 MsG0780039628.01.T01:five_prime_UTR 20.0%
!!! TTTTTTGTTGTTAACATAGA+TGG + Chr7:66922802-66922821 MsG0780039628.01.T01:intron 20.0%
! AAAACAGTATCCTTCAAAAA+TGG - Chr7:66921508-66921527 None:intergenic 25.0%
! AAACAGTATCCTTCAAAAAT+GGG - Chr7:66921507-66921526 None:intergenic 25.0%
! ATTACAGTTTCATTTGATAC+TGG + Chr7:66921158-66921177 MsG0780039628.01.T01:intron 25.0%
! ATTCGGATTAATGTGATATT+TGG + Chr7:66921053-66921072 MsG0780039628.01.T01:intron 25.0%
! ATTTAAACATAATCTGTGCA+GGG - Chr7:66921423-66921442 None:intergenic 25.0%
! CTAAAGATTAAATCATTGAC+GGG + Chr7:66923365-66923384 MsG0780039628.01.T01:intron 25.0%
! GATTATGTTTAAATCCACAA+AGG + Chr7:66921429-66921448 MsG0780039628.01.T01:CDS 25.0%
! GCTCAAATAAGTTAATAAAC+AGG - Chr7:66922465-66922484 None:intergenic 25.0%
! GTATGTGACTTATTAATGTT+AGG - Chr7:66923188-66923207 None:intergenic 25.0%
! GTTTGCTTAGACTAATAAAA+AGG + Chr7:66920357-66920376 MsG0780039628.01.T01:five_prime_UTR 25.0%
! TAATCATTGCTGCAAAATAA+TGG - Chr7:66921903-66921922 None:intergenic 25.0%
! TAGCATATAAGAAAAACAGT+TGG + Chr7:66922616-66922635 MsG0780039628.01.T01:intron 25.0%
! TGTACTTACAATGGAATTTA+AGG - Chr7:66920271-66920290 None:intergenic 25.0%
! TTAGCTTAAAATGCTTCTAA+TGG + Chr7:66920439-66920458 MsG0780039628.01.T01:five_prime_UTR 25.0%
! TTCAAAAATGGGTAAAGTAA+AGG - Chr7:66921496-66921515 None:intergenic 25.0%
! TTCTTTGGATATCTTGTTAA+TGG + Chr7:66920642-66920661 MsG0780039628.01.T01:CDS 25.0%
! TTGTGATAGTAAATTTACCA+TGG - Chr7:66923121-66923140 None:intergenic 25.0%
! TTTACATACTTCAAAATGTG+TGG + Chr7:66924103-66924122 MsG0780039628.01.T01:three_prime_UTR 25.0%
!! AGATTTCATGTTTTTCTTCT+TGG + Chr7:66922717-66922736 MsG0780039628.01.T01:intron 25.0%
!! GAAAAACATGAAATCTGTTT+TGG - Chr7:66922713-66922732 None:intergenic 25.0%
!! GGTTTTTCTTGAATTCATTT+TGG + Chr7:66920701-66920720 MsG0780039628.01.T01:intron 25.0%
!! GTGGATTACAAAAAAAATAG+CGG - Chr7:66921814-66921833 None:intergenic 25.0%
!! TGATTAATTTGAATGACTGT+TGG + Chr7:66922398-66922417 MsG0780039628.01.T01:intron 25.0%
!! TGTATTAGTATTTGAAGCAA+TGG + Chr7:66923032-66923051 MsG0780039628.01.T01:CDS 25.0%
!! TTTGTGCTTACATCAATTTT+TGG + Chr7:66921577-66921596 MsG0780039628.01.T01:intron 25.0%
!! TTTTTATGGATTTAATCCTC+TGG + Chr7:66920948-66920967 MsG0780039628.01.T01:intron 25.0%
!!! AGTTTTTTCCAATGGTAATT+CGG + Chr7:66923313-66923332 MsG0780039628.01.T01:intron 25.0%
!!! ATTTTTGAAGGATACTGTTT+TGG + Chr7:66921507-66921526 MsG0780039628.01.T01:intron 25.0%
!!! GAATTGAAAGTTTTTTCCAA+TGG + Chr7:66923305-66923324 MsG0780039628.01.T01:intron 25.0%
!!! TCACTTTTATTTTCCATTGA+AGG - Chr7:66921191-66921210 None:intergenic 25.0%
!!! TTTACTTTACCCATTTTTGA+AGG + Chr7:66921495-66921514 MsG0780039628.01.T01:intron 25.0%
AAAATGGGTAAAGTAAAGGT+AGG - Chr7:66921492-66921511 None:intergenic 30.0%
AAACCATTAACAGAACAACA+TGG + Chr7:66923724-66923743 MsG0780039628.01.T01:CDS 30.0%
AAAGATGAAGAAAGAAGAAC+AGG + Chr7:66920545-66920564 MsG0780039628.01.T01:exon 30.0%
AACACTTTGTACTATATCAG+AGG + Chr7:66921841-66921860 MsG0780039628.01.T01:intron 30.0%
AACCATTAACAGAACAACAT+GGG + Chr7:66923725-66923744 MsG0780039628.01.T01:CDS 30.0%
AAGATGAAGAAAGAAGAACA+GGG + Chr7:66920546-66920565 MsG0780039628.01.T01:exon 30.0%
ATATTGTGAAATAGTGGCTA+TGG + Chr7:66921760-66921779 MsG0780039628.01.T01:intron 30.0%
ATCAATTGAGTTTAACCACT+TGG + Chr7:66923439-66923458 MsG0780039628.01.T01:intron 30.0%
ATGATGTCAATCTCTAATCA+CGG + Chr7:66921603-66921622 MsG0780039628.01.T01:intron 30.0%
ATTAATCCGAATTCAAACAC+TGG - Chr7:66921045-66921064 None:intergenic 30.0%
CAAACTGACATATTGAAATG+AGG - Chr7:66923150-66923169 None:intergenic 30.0%
CATTAAGGTAAATCAGAAAC+AGG - Chr7:66921291-66921310 None:intergenic 30.0%
CTAAAACATGTCAGCTAATT+TGG - Chr7:66921956-66921975 None:intergenic 30.0%
CTCATTTCAATATGTCAGTT+TGG + Chr7:66923148-66923167 MsG0780039628.01.T01:intron 30.0%
GAAACTTTCAATTAACCAAG+TGG - Chr7:66923457-66923476 None:intergenic 30.0%
GAATTTGTGTGTACTTACAA+TGG - Chr7:66920280-66920299 None:intergenic 30.0%
GATTTAAACATAATCTGTGC+AGG - Chr7:66921424-66921443 None:intergenic 30.0%
GCAGATATATACTCATGTAT+TGG - Chr7:66922136-66922155 None:intergenic 30.0%
GGTACTTCACATTTATTCAA+GGG + Chr7:66921257-66921276 MsG0780039628.01.T01:CDS 30.0%
GTATATATCTGCAATACTCT+TGG + Chr7:66922144-66922163 MsG0780039628.01.T01:CDS 30.0%
TATGCAAAAGGTTAAGAGTT+TGG - Chr7:66923255-66923274 None:intergenic 30.0%
TCTGATATAGTACAAAGTGT+TGG - Chr7:66921842-66921861 None:intergenic 30.0%
TGGTACTTCACATTTATTCA+AGG + Chr7:66921256-66921275 MsG0780039628.01.T01:CDS 30.0%
TTCAGGAATATGTGTATAAC+AGG + Chr7:66921104-66921123 MsG0780039628.01.T01:intron 30.0%
TTCATGTTCACAGGTAAATT+TGG + Chr7:66922910-66922929 MsG0780039628.01.T01:intron 30.0%
TTTGAGAGAGCTTATAGAAA+CGG + Chr7:66922516-66922535 MsG0780039628.01.T01:intron 30.0%
! AAGAAGAAGAATTGTTTTCG+TGG - Chr7:66920395-66920414 None:intergenic 30.0%
! TGTATAACAGGCTTCATTTT+AGG + Chr7:66921116-66921135 MsG0780039628.01.T01:CDS 30.0%
! TTCTCATTTGTGTGATTTTC+AGG + Chr7:66921087-66921106 MsG0780039628.01.T01:intron 30.0%
! TTGGTTATGGATTCTTTTCT+TGG + Chr7:66922253-66922272 MsG0780039628.01.T01:CDS 30.0%
! TTTCTTTCTTGTTTCAGCTA+TGG + Chr7:66921232-66921251 MsG0780039628.01.T01:intron 30.0%
!! CTGTTTCTGATTTACCTTAA+TGG + Chr7:66921289-66921308 MsG0780039628.01.T01:CDS 30.0%
!! GTTGCTAATTCAACTTTTTC+TGG + Chr7:66922747-66922766 MsG0780039628.01.T01:intron 30.0%
!! TACTGAATTGAATTTTGGGT+TGG + Chr7:66920498-66920517 MsG0780039628.01.T01:five_prime_UTR 30.0%
!!! ATTTTGGGTTGGTTTCAAAT+TGG + Chr7:66920509-66920528 MsG0780039628.01.T01:five_prime_UTR 30.0%
!!! CTTTTTTTCAGTTACCTTTG+TGG - Chr7:66921446-66921465 None:intergenic 30.0%
AAGCTTTCTGCTGTACTAAT+GGG + Chr7:66921355-66921374 MsG0780039628.01.T01:CDS 35.0%
AATGAGAAATTGTTGCCATC+TGG - Chr7:66920607-66920626 None:intergenic 35.0%
ACACCAACAACACTGAAATT+AGG - Chr7:66922214-66922233 None:intergenic 35.0%
ACAGATAACAACAGCAAGAA+AGG + Chr7:66923666-66923685 MsG0780039628.01.T01:intron 35.0%
ACTAATACACCATACACGTA+GGG - Chr7:66923021-66923040 None:intergenic 35.0%
ACTATATCAGAGGACAATAG+TGG + Chr7:66921851-66921870 MsG0780039628.01.T01:intron 35.0%
ATGAGAAATTGTTGCCATCT+GGG - Chr7:66920606-66920625 None:intergenic 35.0%
CAATTTCTCATTTGTTCGTC+TGG + Chr7:66920615-66920634 MsG0780039628.01.T01:CDS 35.0%
CAGGAGAATTATTCAAAGCA+TGG + Chr7:66922885-66922904 MsG0780039628.01.T01:CDS 35.0%
GAAGCAATGGCTACATTTAT+AGG + Chr7:66923045-66923064 MsG0780039628.01.T01:CDS 35.0%
GGTTGTAGCATAGCAAAATT+TGG - Chr7:66921882-66921901 None:intergenic 35.0%
TAAATTTACCATGGCTGTAG+TGG - Chr7:66923112-66923131 None:intergenic 35.0%
TAATGTTAGGTGCAGTACAA+TGG - Chr7:66923175-66923194 None:intergenic 35.0%
TACTAATACACCATACACGT+AGG - Chr7:66923022-66923041 None:intergenic 35.0%
TAGGTGAAGAAGATGATGAA+AGG + Chr7:66923902-66923921 MsG0780039628.01.T01:CDS 35.0%
TATCATTCAACCTAGACCAA+GGG - Chr7:66923931-66923950 None:intergenic 35.0%
TCACCTAATTTCAGTGTTGT+TGG + Chr7:66922208-66922227 MsG0780039628.01.T01:CDS 35.0%
TCTCTAATCACGGAAAATAG+TGG + Chr7:66921613-66921632 MsG0780039628.01.T01:intron 35.0%
TCTTGTTAATGGTATCTGTG+AGG + Chr7:66920653-66920672 MsG0780039628.01.T01:CDS 35.0%
TTATCATTCAACCTAGACCA+AGG - Chr7:66923932-66923951 None:intergenic 35.0%
TTCGGTTAGGAGATAAAAGT+CGG + Chr7:66921002-66921021 MsG0780039628.01.T01:intron 35.0%
TTCTAGCCAGTGTTTGAATT+CGG + Chr7:66921036-66921055 MsG0780039628.01.T01:intron 35.0%
TTGTGTCTTTGTGTGTAGAA+GGG + Chr7:66920817-66920836 MsG0780039628.01.T01:intron 35.0%
TTTGTGTCTTTGTGTGTAGA+AGG + Chr7:66920816-66920835 MsG0780039628.01.T01:intron 35.0%
! AATTCTCCTGTAAAAAGCAC+AGG - Chr7:66922875-66922894 None:intergenic 35.0%
! ACTACTGTTGATGAAGAGTT+GGG + Chr7:66923862-66923881 MsG0780039628.01.T01:CDS 35.0%
! AGCTTCACATAAGTTTTCCA+TGG - Chr7:66921340-66921359 None:intergenic 35.0%
! ATGTTTGAAACACATGGAGA+TGG + Chr7:66921537-66921556 MsG0780039628.01.T01:intron 35.0%
! ATTTAAGGCTCTCTTAGGTA+TGG - Chr7:66923812-66923831 None:intergenic 35.0%
! GAAGTATTTAAGGCTCTCTT+AGG - Chr7:66923817-66923836 None:intergenic 35.0%
! GACACAGTGTTGTTAAATAG+CGG + Chr7:66921679-66921698 MsG0780039628.01.T01:intron 35.0%
! GCTTCACATAAGTTTTCCAT+GGG - Chr7:66921339-66921358 None:intergenic 35.0%
! GTTGGTTTCAAATTGGTGAA+TGG + Chr7:66920516-66920535 MsG0780039628.01.T01:five_prime_UTR 35.0%
! TACATGCTCTCTTCTCTTTT+TGG + Chr7:66920680-66920699 MsG0780039628.01.T01:intron 35.0%
! TACTACTGTTGATGAAGAGT+TGG + Chr7:66923861-66923880 MsG0780039628.01.T01:CDS 35.0%
! TCGGTTATGTTTGAAACACA+TGG + Chr7:66921531-66921550 MsG0780039628.01.T01:intron 35.0%
! TTTCTTGTTTCAGCTATGGT+TGG + Chr7:66921236-66921255 MsG0780039628.01.T01:intron 35.0%
!! ATGTTTTAGACACTGTGTCA+TGG + Chr7:66921967-66921986 MsG0780039628.01.T01:intron 35.0%
!! GTCTCTCTGAGAAGTATTTA+AGG - Chr7:66923827-66923846 None:intergenic 35.0%
!! GTTGGTGTTGTTATGATAAC+CGG + Chr7:66922226-66922245 MsG0780039628.01.T01:CDS 35.0%
!! TGAAGGATACTGTTTTGGAT+CGG + Chr7:66921512-66921531 MsG0780039628.01.T01:intron 35.0%
!!! GATTTAATCCTCTGGTTTTC+GGG + Chr7:66920956-66920975 MsG0780039628.01.T01:intron 35.0%
!!! GGATTTAATCCTCTGGTTTT+CGG + Chr7:66920955-66920974 MsG0780039628.01.T01:intron 35.0%
!!! TACTGGTTTTTAGCCTTCAA+TGG + Chr7:66921175-66921194 MsG0780039628.01.T01:intron 35.0%
AGAATCCATAACCAAAGCAC+CGG - Chr7:66922248-66922267 None:intergenic 40.0%
AGCACCAAAAAGGGCAATTA+GGG - Chr7:66923088-66923107 None:intergenic 40.0%
AGTCAGACTTCACTTACCTT+TGG - Chr7:66923347-66923366 None:intergenic 40.0%
CAGAGATGATTAGGAAGTGA+TGG - Chr7:66922337-66922356 None:intergenic 40.0%
CATCTTCAATGTGATTCCCA+TGG - Chr7:66923770-66923789 None:intergenic 40.0%
CTCAAACTCCGAATTACCAT+TGG - Chr7:66923324-66923343 None:intergenic 40.0%
CTCCCATGTTGTTCTGTTAA+TGG - Chr7:66923730-66923749 None:intergenic 40.0%
GAAGAGTTGGGAACATTTCA+TGG + Chr7:66923874-66923893 MsG0780039628.01.T01:CDS 40.0%
GAAGCTTTCTGCTGTACTAA+TGG + Chr7:66921354-66921373 MsG0780039628.01.T01:CDS 40.0%
GCTTGCTTGTGAAACCATTA+AGG - Chr7:66921306-66921325 None:intergenic 40.0%
GGACTAATACTCATAGCCAT+GGG + Chr7:66923751-66923770 MsG0780039628.01.T01:CDS 40.0%
GGATCACATGGCTTAACAAA+GGG + Chr7:66921376-66921395 MsG0780039628.01.T01:CDS 40.0%
GTGAAGAAGATGATGAAAGG+AGG + Chr7:66923905-66923924 MsG0780039628.01.T01:CDS 40.0%
GTTCTGCCAGTGATGATAAT+GGG + Chr7:66922079-66922098 MsG0780039628.01.T01:CDS 40.0%
TAATTCGGAGTTTGAGCCAA+AGG + Chr7:66923328-66923347 MsG0780039628.01.T01:intron 40.0%
TAGAAACGGCTTATGACATG+TGG + Chr7:66922530-66922549 MsG0780039628.01.T01:intron 40.0%
TATGAATCCTGATACCACAC+AGG + Chr7:66922300-66922319 MsG0780039628.01.T01:CDS 40.0%
TCGGTTAGGAGATAAAAGTC+GGG + Chr7:66921003-66921022 MsG0780039628.01.T01:intron 40.0%
TCTTCTCAGACCAGGAATAA+AGG - Chr7:66922107-66922126 None:intergenic 40.0%
TGGAAAATTGATCACCTGTG+TGG - Chr7:66922317-66922336 None:intergenic 40.0%
TGGACTAATACTCATAGCCA+TGG + Chr7:66923750-66923769 MsG0780039628.01.T01:CDS 40.0%
TGGCTTAACAAAGGGTTCTT+TGG + Chr7:66921384-66921403 MsG0780039628.01.T01:CDS 40.0%
TGGTTTCACAAGCAAGCAAA+TGG + Chr7:66921309-66921328 MsG0780039628.01.T01:CDS 40.0%
TGTGTCTTTGTGTGTAGAAG+GGG + Chr7:66920818-66920837 MsG0780039628.01.T01:intron 40.0%
TGTTATGATAACCGGTGCTT+TGG + Chr7:66922234-66922253 MsG0780039628.01.T01:CDS 40.0%
TGTTCGTCTGGATTCTTCTT+TGG + Chr7:66920627-66920646 MsG0780039628.01.T01:CDS 40.0%
TTAACAGAACAACATGGGAG+TGG + Chr7:66923730-66923749 MsG0780039628.01.T01:CDS 40.0%
! ACACTGGCTAGAACAATCAT+TGG - Chr7:66921029-66921048 None:intergenic 40.0%
! GGAACATTTCATGGTTCTGT+AGG + Chr7:66923883-66923902 MsG0780039628.01.T01:CDS 40.0%
! GGATATTTTCTTCTCAGACC+AGG - Chr7:66922115-66922134 None:intergenic 40.0%
! TCTGCAATACTCTTGGTAGT+TGG + Chr7:66922151-66922170 MsG0780039628.01.T01:CDS 40.0%
! TGATAATCTGGAGTTCGGTT+AGG + Chr7:66920989-66921008 MsG0780039628.01.T01:intron 40.0%
!! ATAATGGGTGCCTTTATTCC+TGG + Chr7:66922094-66922113 MsG0780039628.01.T01:CDS 40.0%
!! GGAAAATGGCTCTGATAATC+TGG + Chr7:66920977-66920996 MsG0780039628.01.T01:intron 40.0%
!! GTACAAAGTGTTGGCAATTG+TGG - Chr7:66921833-66921852 None:intergenic 40.0%
!!! CTGTTGGTCTCTAGTTTTGA+CGG + Chr7:66922414-66922433 MsG0780039628.01.T01:intron 40.0%
!!! TGTTGGTCTCTAGTTTTGAC+GGG + Chr7:66922415-66922434 MsG0780039628.01.T01:intron 40.0%
AGCACAGGTGGGATTAAGAA+AGG - Chr7:66922860-66922879 None:intergenic 45.0%
AGCATGGACTTCATGTTCAC+AGG + Chr7:66922901-66922920 MsG0780039628.01.T01:CDS 45.0%
CAAAAAGGGCAATTAGGGAG+AGG - Chr7:66923083-66923102 None:intergenic 45.0%
CAGCACCAAAAAGGGCAATT+AGG - Chr7:66923089-66923108 None:intergenic 45.0%
CTCTTCAAACTGCGTCATTC+AGG + Chr7:66921996-66922015 MsG0780039628.01.T01:intron 45.0%
CTCTTCTGCTCTACAGTAGT+GGG + Chr7:66922830-66922849 MsG0780039628.01.T01:CDS 45.0%
GATAACCGGTGCTTTGGTTA+TGG + Chr7:66922240-66922259 MsG0780039628.01.T01:CDS 45.0%
GCTGTACTAATGGGATCACA+TGG + Chr7:66921364-66921383 MsG0780039628.01.T01:CDS 45.0%
GGGATCACATGGCTTAACAA+AGG + Chr7:66921375-66921394 MsG0780039628.01.T01:CDS 45.0%
GGTTCTGCCAGTGATGATAA+TGG + Chr7:66922078-66922097 MsG0780039628.01.T01:intron 45.0%
GTGCGTCTGCTAGTGTAAAT+AGG - Chr7:66922183-66922202 None:intergenic 45.0%
TGTAGTGGCAGCACCAAAAA+GGG - Chr7:66923097-66923116 None:intergenic 45.0%
TTAGGGAGAGGACTGAAACT+TGG - Chr7:66923071-66923090 None:intergenic 45.0%
TTGATCACCTGTGTGGTATC+AGG - Chr7:66922310-66922329 None:intergenic 45.0%
! AAGGCACCCATTATCATCAC+TGG - Chr7:66922088-66922107 None:intergenic 45.0%
! AATCATTGACGGGTCGAACT+CGG + Chr7:66923375-66923394 MsG0780039628.01.T01:intron 45.0%
! CTCCTGTAAAAAGCACAGGT+GGG - Chr7:66922871-66922890 None:intergenic 45.0%
! CTCTCCCTAATTGCCCTTTT+TGG + Chr7:66923081-66923100 MsG0780039628.01.T01:CDS 45.0%
! GGCTCTGATAATCTGGAGTT+CGG + Chr7:66920984-66921003 MsG0780039628.01.T01:intron 45.0%
! GGGAAAGCACAGAGATGATT+AGG - Chr7:66922346-66922365 None:intergenic 45.0%
! TCTCCTGTAAAAAGCACAGG+TGG - Chr7:66922872-66922891 None:intergenic 45.0%
!! ATCCCACCTGTGCTTTTTAC+AGG + Chr7:66922866-66922885 MsG0780039628.01.T01:CDS 45.0%
!! GAACAGGGTCGTAGTTTGTT+TGG + Chr7:66920561-66920580 MsG0780039628.01.T01:CDS 45.0%
!! GGTATGGCAGGTTTGTTTTC+AGG - Chr7:66923796-66923815 None:intergenic 45.0%
!!! TCCTCTGGTTTTCGGGAAAA+TGG + Chr7:66920963-66920982 MsG0780039628.01.T01:intron 45.0%
AAGGCTCTCTTAGGTATGGC+AGG - Chr7:66923808-66923827 None:intergenic 50.0%
AGATGATGAAAGGAGGCCCT+TGG + Chr7:66923912-66923931 MsG0780039628.01.T01:CDS 50.0%
ATACACGTAGGGATGCTGCA+AGG - Chr7:66923010-66923029 None:intergenic 50.0%
CACTCTCTGATAGACCCAGA+TGG + Chr7:66920589-66920608 MsG0780039628.01.T01:CDS 50.0%
CTGTAGTGGCAGCACCAAAA+AGG - Chr7:66923098-66923117 None:intergenic 50.0%
GCAAGCAAATGGTGAACCCA+TGG + Chr7:66921320-66921339 MsG0780039628.01.T01:CDS 50.0%
GCAGCTAATGCGTTGTAGTG+CGG - Chr7:66921654-66921673 None:intergenic 50.0%
GCTATGGCACTGTTGCATAG+CGG + Chr7:66921776-66921795 MsG0780039628.01.T01:intron 50.0%
GCTCTTCTGCTCTACAGTAG+TGG + Chr7:66922829-66922848 MsG0780039628.01.T01:CDS 50.0%
TTGCAGCATCCCTACGTGTA+TGG + Chr7:66923009-66923028 MsG0780039628.01.T01:intron 50.0%
!! GCCATTTTCCCGAAAACCAG+AGG - Chr7:66920967-66920986 None:intergenic 50.0%
GCTAATGCGTTGTAGTGCGG+TGG - Chr7:66921651-66921670 None:intergenic 55.0%
TGAAAGGAGGCCCTTGGTCT+AGG + Chr7:66923918-66923937 MsG0780039628.01.T01:CDS 55.0%
!! TGGTGCTGCCACTACAGCCA+TGG + Chr7:66923101-66923120 MsG0780039628.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 66920250 66924141 66920250 ID=MsG0780039628.01;Name=MsG0780039628.01
Chr7 mRNA 66920250 66924141 66920250 ID=MsG0780039628.01.T01;Parent=MsG0780039628.01;Name=MsG0780039628.01.T01;_AED=0.41;_eAED=0.41;_QI=299|1|1|1|1|1|7|202|359
Chr7 exon 66920250 66920674 66920250 ID=MsG0780039628.01.T01:exon:13209;Parent=MsG0780039628.01.T01
Chr7 exon 66921109 66921137 66921109 ID=MsG0780039628.01.T01:exon:13210;Parent=MsG0780039628.01.T01
Chr7 exon 66921249 66921450 66921249 ID=MsG0780039628.01.T01:exon:13211;Parent=MsG0780039628.01.T01
Chr7 exon 66922079 66922321 66922079 ID=MsG0780039628.01.T01:exon:13212;Parent=MsG0780039628.01.T01
Chr7 exon 66922821 66922922 66922821 ID=MsG0780039628.01.T01:exon:13213;Parent=MsG0780039628.01.T01
Chr7 exon 66923015 66923122 66923015 ID=MsG0780039628.01.T01:exon:13214;Parent=MsG0780039628.01.T01
Chr7 exon 66923670 66924141 66923670 ID=MsG0780039628.01.T01:exon:13215;Parent=MsG0780039628.01.T01
Chr7 five_prime_UTR 66920250 66920548 66920250 ID=MsG0780039628.01.T01:five_prime_utr;Parent=MsG0780039628.01.T01
Chr7 CDS 66920549 66920674 66920549 ID=MsG0780039628.01.T01:cds;Parent=MsG0780039628.01.T01
Chr7 CDS 66921109 66921137 66921109 ID=MsG0780039628.01.T01:cds;Parent=MsG0780039628.01.T01
Chr7 CDS 66921249 66921450 66921249 ID=MsG0780039628.01.T01:cds;Parent=MsG0780039628.01.T01
Chr7 CDS 66922079 66922321 66922079 ID=MsG0780039628.01.T01:cds;Parent=MsG0780039628.01.T01
Chr7 CDS 66922821 66922922 66922821 ID=MsG0780039628.01.T01:cds;Parent=MsG0780039628.01.T01
Chr7 CDS 66923015 66923122 66923015 ID=MsG0780039628.01.T01:cds;Parent=MsG0780039628.01.T01
Chr7 CDS 66923670 66923939 66923670 ID=MsG0780039628.01.T01:cds;Parent=MsG0780039628.01.T01
Chr7 three_prime_UTR 66923940 66924141 66923940 ID=MsG0780039628.01.T01:three_prime_utr;Parent=MsG0780039628.01.T01
Gene Sequence

>MsG0780039628.01.T01

ATGAAGAAAGAAGAACAGGGTCGTAGTTTGTTTGGAATTTCACTCTCTGATAGACCCAGATGGCAACAATTTCTCATTTGTTCGTCTGGATTCTTCTTTGGATATCTTGTTAATGGTATCTGTGAGGAATATGTGTATAACAGGCTTCATTTTAGCTATGGTTGGTACTTCACATTTATTCAAGGGTTTGTTTACCTGTTTCTGATTTACCTTAATGGTTTCACAAGCAAGCAAATGGTGAACCCATGGAAAACTTATGTGAAGCTTTCTGCTGTACTAATGGGATCACATGGCTTAACAAAGGGTTCTTTGGCTTTTCTTAATTACCCTGCACAGATTATGTTTAAATCCACAAAGGTTCTGCCAGTGATGATAATGGGTGCCTTTATTCCTGGTCTGAGAAGAAAATATCCAATACATGAGTATATATCTGCAATACTCTTGGTAGTTGGATTGATCCTATTTACACTAGCAGACGCACATACATCACCTAATTTCAGTGTTGTTGGTGTTGTTATGATAACCGGTGCTTTGGTTATGGATTCTTTTCTTGGCAATCTTCAAGAAGCAATCTTTACTATGAATCCTGATACCACACAGATGGAGATGCTCTTCTGCTCTACAGTAGTGGGATTACCTTTCTTAATCCCACCTGTGCTTTTTACAGGAGAATTATTCAAAGCATGGACTTCATGTTCACAGCATCCCTACGTGTATGGTGTATTAGTATTTGAAGCAATGGCTACATTTATAGGCCAAGTTTCAGTCCTCTCCCTAATTGCCCTTTTTGGTGCTGCCACTACAGCCATGATAACAACAGCAAGAAAGGCAGTGACATTGCTGCTATCATACTTGATATTTACAAAACCATTAACAGAACAACATGGGAGTGGACTAATACTCATAGCCATGGGAATCACATTGAAGATGTTGCCTGAAAACAAACCTGCCATACCTAAGAGAGCCTTAAATACTTCTCAGAGAGACAGTAGTGCAAAATCTACTACTGTTGATGAAGAGTTGGGAACATTTCATGGTTCTGTAGGTGAAGAAGATGATGAAAGGAGGCCCTTGGTCTAG
Protein sequence

>MsG0780039628.01.T01

MKKEEQGRSLFGISLSDRPRWQQFLICSSGFFFGYLVNGICEEYVYNRLHFSYGWYFTFIQGFVYLFLIYLNGFTSKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPIHEYISAILLVVGLILFTLADAHTSPNFSVVGVVMITGALVMDSFLGNLQEAIFTMNPDTTQMEMLFCSTVVGLPFLIPPVLFTGELFKAWTSCSQHPYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGSGLILIAMGITLKMLPENKPAIPKRALNTSQRDSSAKSTTVDEELGTFHGSVGEEDDERRPLV*