AlfalfaGEDB | MsG0580025903.01

M. sativa cultivar ZhongmuNo.1 / MsG0580025903.01

KEGG: K00161
GO: GO:0008152 GO:0016624
PFAM: PF00676

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025903.01.T01	XP_003613433.1	95.669	254	10	1	1	254	143	395	4.77E-177	503

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025903.01.T01	P52902	90.945	254	22	1	1	254	145	397	6.86E-172	482

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025903.01.T01	G7K5M8	95.669	254	10	1	1	254	143	395	2.28e-177	503

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048784.01	MsG0580025903.01	0.815764	7.820919e-52	5.440879e-49
MsG0180000101.01	MsG0580025903.01	0.818021	2.435818e-52	1.802421e-49
MsG0180000176.01	MsG0580025903.01	0.872201	3.816018e-67	1.582767e-63
MsG0180000235.01	MsG0580025903.01	0.816639	4.984313e-52	3.551222e-49
MsG0180000555.01	MsG0580025903.01	0.810439	1.152002e-50	6.943983e-48
MsG0180000806.01	MsG0580025903.01	0.810792	9.665765e-51	5.881747e-48
MsG0180000982.01	MsG0580025903.01	0.803534	3.330592e-49	1.677891e-46
MsG0180001173.01	MsG0580025903.01	0.814879	1.230566e-51	8.355324e-49
MsG0180001315.01	MsG0580025903.01	0.814608	1.413028e-51	9.524799e-49
MsG0180002283.01	MsG0580025903.01	0.804861	1.762822e-49	9.189495e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025903.01.T01	MTR_5g036600	95.669	254	10	1	1	254	143	395	0.0	503
MsG0580025903.01.T01	MTR_8g062670	86.220	254	34	1	1	254	143	395	6.69e-163	457
MsG0580025903.01.T01	MTR_8g024310	38.113	265	139	7	1	248	160	416	4.16e-55	183
MsG0580025903.01.T01	MTR_3g088845	29.583	240	161	4	1	235	115	351	1.83e-28	111
MsG0580025903.01.T01	MTR_3g088845	29.583	240	161	4	1	235	203	439	6.45e-28	111
MsG0580025903.01.T01	MTR_3g096390	30.126	239	143	8	9	233	190	418	1.84e-25	104
MsG0580025903.01.T01	MTR_7g118200	42.254	71	38	2	94	161	18	88	2.66e-11	59.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025903.01.T01	AT1G59900	84.252	254	39	1	1	254	137	389	1.44e-162	456
MsG0580025903.01.T01	AT1G24180	83.071	254	42	1	1	254	141	393	1.20e-159	448
MsG0580025903.01.T01	AT1G59900	84.298	242	37	1	1	242	137	377	2.46e-154	434
MsG0580025903.01.T01	AT1G01090	39.615	260	141	7	1	248	162	417	2.50e-54	181
MsG0580025903.01.T01	AT5G09300	29.185	233	151	4	9	233	144	370	1.06e-28	112
MsG0580025903.01.T01	AT5G09300	29.185	233	151	4	9	233	215	441	3.84e-28	112
MsG0580025903.01.T01	AT1G21400	28.755	233	152	4	9	233	123	349	1.19e-26	106
MsG0580025903.01.T01	AT1G21400	28.755	233	152	4	9	233	123	349	1.19e-26	106
MsG0580025903.01.T01	AT1G21400	28.755	233	152	4	9	233	140	366	1.88e-26	106
MsG0580025903.01.T01	AT1G21400	28.755	233	152	4	9	233	215	441	3.68e-26	106

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Find 74 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCAAACCGCAACCAAG+TGG	0.586508	5:+26408314	None:intergenic
AACTTATGGGGAGAGTTGAT+GGG	0.617648	5:-26408424	None:intergenic
AAGAGAGGTGATTATGTTCC+TGG	0.308473	5:-26407980	MsG0580025903.01.T01:CDS
AAGGAGCATGCTTTGAAGAA+TGG	0.476403	5:-26406572	MsG0580025903.01.T01:CDS
AATGTATATGTTAAAGGATA+TGG	0.343143	5:-26404235	MsG0580025903.01.T01:CDS
AATTTACCCTTGAATAGCAA+TGG	0.535767	5:-26403798	MsG0580025903.01.T01:three_prime_UTR
ACAAGCTGTTAAATTTGCAA+AGG	0.567006	5:-26406591	MsG0580025903.01.T01:CDS
ACATTGGTAAATAGATCAGA+TGG	0.589475	5:+26404253	None:intergenic
ACCACTAAATTTCCTATTTA+TGG	0.090762	5:+26403908	None:intergenic
ACCTATTAACCAAGATTAAG+GGG	0.588728	5:+26403651	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATTACTAGAGTGAAGG+AGG	+	Chr5:26406636-26406655	None:intergenic	30.0%
AAAATTACTAGAGTGAAGGA+GGG	+	Chr5:26406635-26406654	None:intergenic	30.0%
AATTTACCCTTGAATAGCAA+TGG	-	Chr5:26408139-26408158	MsG0580025903.01.T01:intron	30.0%
ACAAAATGTGGAAATAGCTA+TGG	+	Chr5:26407200-26407219	None:intergenic	30.0%
ACAAGCTGTTAAATTTGCAA+AGG	-	Chr5:26405346-26405365	MsG0580025903.01.T01:intron	30.0%
ACATTGGTAAATAGATCAGA+TGG	+	Chr5:26407687-26407706	None:intergenic	30.0%
ACATTTGAACTTGTAAATGG+AGG	-	Chr5:26404624-26404643	MsG0580025903.01.T01:intron	30.0%
ACCTATTAACCAAGATTAAG+GGG	+	Chr5:26408289-26408308	None:intergenic	30.0%
ATGAAGTGATGTGGTTATAA+AGG	-	Chr5:26406928-26406947	MsG0580025903.01.T01:intron	30.0%
ATGTATATAGTAGGGCATAA+AGG	+	Chr5:26405247-26405266	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	26403518	26408441	26403518	ID=MsG0580025903.01;Name=MsG0580025903.01
Chr5	mRNA	26403518	26408441	26403518	ID=MsG0580025903.01.T01;Parent=MsG0580025903.01;Name=MsG0580025903.01.T01;_AED=0.41;_eAED=0.41;_QI=0\|0.85\|0.87\|1\|1\|1\|8\|407\|254
Chr5	exon	26403518	26403969	26403518	ID=MsG0580025903.01.T01:exon:4354;Parent=MsG0580025903.01.T01
Chr5	exon	26404228	26404293	26404228	ID=MsG0580025903.01.T01:exon:4353;Parent=MsG0580025903.01.T01
Chr5	exon	26404427	26404480	26404427	ID=MsG0580025903.01.T01:exon:4352;Parent=MsG0580025903.01.T01
Chr5	exon	26406116	26406187	26406116	ID=MsG0580025903.01.T01:exon:4351;Parent=MsG0580025903.01.T01
Chr5	exon	26406282	26406377	26406282	ID=MsG0580025903.01.T01:exon:4350;Parent=MsG0580025903.01.T01
Chr5	exon	26406565	26406642	26406565	ID=MsG0580025903.01.T01:exon:4349;Parent=MsG0580025903.01.T01
Chr5	exon	26407973	26408052	26407973	ID=MsG0580025903.01.T01:exon:4348;Parent=MsG0580025903.01.T01
Chr5	exon	26408168	26408441	26408168	ID=MsG0580025903.01.T01:exon:4347;Parent=MsG0580025903.01.T01
Chr5	CDS	26408168	26408441	26408168	ID=MsG0580025903.01.T01:cds;Parent=MsG0580025903.01.T01
Chr5	CDS	26407973	26408052	26407973	ID=MsG0580025903.01.T01:cds;Parent=MsG0580025903.01.T01
Chr5	CDS	26406565	26406642	26406565	ID=MsG0580025903.01.T01:cds;Parent=MsG0580025903.01.T01
Chr5	CDS	26406282	26406377	26406282	ID=MsG0580025903.01.T01:cds;Parent=MsG0580025903.01.T01
Chr5	CDS	26406116	26406187	26406116	ID=MsG0580025903.01.T01:cds;Parent=MsG0580025903.01.T01
Chr5	CDS	26404427	26404480	26404427	ID=MsG0580025903.01.T01:cds;Parent=MsG0580025903.01.T01
Chr5	CDS	26404228	26404293	26404228	ID=MsG0580025903.01.T01:cds;Parent=MsG0580025903.01.T01
Chr5	CDS	26403925	26403969	26403925	ID=MsG0580025903.01.T01:cds;Parent=MsG0580025903.01.T01
Chr5	three_prime_UTR	26403518	26403924	26403518	ID=MsG0580025903.01.T01:three_prime_utr;Parent=MsG0580025903.01.T01

Gene Sequence

>MsG0580025903.01.T01

ATGGGGAGAGTTGATGGGTGCTCTAAAGGGAAAGGTGGGTCCATGCATTTTTATAAGAAGGATTCTGGGTTTTTTGGTGGTCATGGGATTGTGGGAGCTCAGGTTCCACTTGGTTGCGGTTTGGCTTTTGGGCAAAAGTATATGAAGAATGAGAGTGTTACTTTTGCACTGTATGGTGATGGTGCTGCGAACCAAGGGCAGCTTTTTGAAGCGCTTAATATTGCCGCTCTTTGGGATCTTCCTGCTATTTTGGTTTGTGAGAAAATCATTGTGAATGGAATGGGAACTGCTGAATGGAAAGCTGCTAAGAGTCCTGCTTATTATAAGAGAGGTGATTATGTTCCTGGGTTGAAGGTAGATGGCATGGATGTTCTTGCTGTGAAACAAGCTGTTAAATTTGCAAAGGAGCATGCTTTGAAGAATGGACCCATTATTCTTGAAATGGACACTTACAGATACCATGGTCACTCTATGTCTGATCCTGGCAGCACATACCGAACACGTGATGAAATTTCTGGTGTGAGACAGGAGCGTGATCCAATTGAGAGAGTAAAAAAGCTGTTATTGTCTCATGACATTGCTACCGAAAAGGAGCTAAAGGACACTGAAAAAGAAGTCAGAAAAGAAGTTGATGAAGCCATTGCTAAAGCAAAGGAGAGTCCAATGCCACAGCCATCTGATCTATTTACCAATGTATATGTTAAAGGATATGGCGTTGAGGCATTTGGTGCTGACAGGAAAGAAGTGAGAGCTGCTTTGCCATAA

Protein sequence

>MsG0580025903.01.T01

MGRVDGCSKGKGGSMHFYKKDSGFFGGHGIVGAQVPLGCGLAFGQKYMKNESVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEKIIVNGMGTAEWKAAKSPAYYKRGDYVPGLKVDGMDVLAVKQAVKFAKEHALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVKKLLLSHDIATEKELKDTEKEVRKEVDEAIAKAKESPMPQPSDLFTNVYVKGYGVEAFGADRKEVRAALP*