AlfalfaGEDB | MsG0180000176.01

M. sativa cultivar ZhongmuNo.1 / MsG0180000176.01

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000176.01.T01	XP_013466061.1	98.077	52	1	0	1	52	210	261	2.36E-25	103

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000176.01.T01	Q9FZF1	67.308	52	17	0	1	52	197	248	3.30E-18	77

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000176.01.T01	A0A072VPP1	98.077	52	1	0	1	52	210	261	1.13e-25	103

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000176.01	MsG0180000235.01	0.826984	2.009571e-54	1.914515e-51
MsG0180000176.01	MsG0180000806.01	0.800060	1.720206e-48	7.933404e-46
MsG0180000176.01	MsG0180001886.01	0.806313	8.742131e-50	4.729801e-47
MsG0180000176.01	MsG0180002283.01	0.822813	1.937890e-53	1.639406e-50
MsG0180000176.01	MsG0180002955.01	0.804354	2.249006e-49	1.157103e-46
MsG0180000176.01	MsG0180003031.01	0.820733	5.869933e-53	4.682481e-50
MsG0180000176.01	MsG0180003357.01	0.801771	7.692856e-49	3.704798e-46
MsG0180000176.01	MsG0180003379.01	0.819433	1.164420e-52	8.959379e-50
MsG0180000176.01	MsG0180003671.01	0.809166	2.164087e-50	1.261435e-47
MsG0180000176.01	MsG0180004050.01	0.800910	1.154598e-48	5.441142e-46
MsG0180000176.01	MsG0180004331.01	0.804280	2.329846e-49	1.196402e-46
MsG0180000176.01	MsG0180004449.01	0.807996	3.847369e-50	2.174370e-47
MsG0180000176.01	MsG0180004645.01	0.811518	6.726856e-51	4.172869e-48
MsG0180000176.01	MsG0180004843.01	0.803426	3.506777e-49	1.761684e-46
MsG0180000176.01	MsG0180005049.01	0.814956	1.182854e-51	8.048401e-49
MsG0180000176.01	MsG0180005398.01	0.814040	1.886307e-51	1.252138e-48
MsG0180000176.01	MsG0180005445.01	0.816132	6.475019e-52	4.549786e-49
MsG0180000176.01	MsG0180005765.01	0.815378	9.533153e-52	6.561747e-49
MsG0180000176.01	MsG0180005786.01	0.813503	2.476314e-51	1.620066e-48
MsG0180000176.01	MsG0180006155.01	0.830396	3.006561e-55	3.163773e-52
MsG0180000176.01	MsG0280006906.01	0.842174	3.037377e-58	4.567023e-55
MsG0180000176.01	MsG0280007109.01	0.821566	3.772489e-53	3.080177e-50
MsG0180000176.01	MsG0280007153.01	0.800963	1.126180e-48	5.314416e-46
MsG0180000176.01	MsG0280007585.01	0.820827	5.582276e-53	4.465066e-50
MsG0180000176.01	MsG0280007636.01	0.807620	4.624240e-50	2.587807e-47
MsG0180000176.01	MsG0280007710.01	0.801142	1.035235e-48	4.907287e-46
MsG0180000176.01	MsG0280007984.01	0.826198	3.093425e-54	2.881463e-51
MsG0180000176.01	MsG0280008363.01	0.805544	1.268565e-49	6.729379e-47
MsG0180000176.01	MsG0280008502.01	0.840492	8.417582e-58	1.201074e-54
MsG0180000176.01	MsG0280008556.01	0.815289	9.975233e-52	6.849577e-49
MsG0180000176.01	MsG0280009350.01	0.805435	1.337075e-49	7.073212e-47
MsG0180000176.01	MsG0280009441.01	0.810970	8.845797e-51	5.408880e-48
MsG0180000176.01	MsG0280010205.01	0.806004	1.015093e-49	5.449325e-47
MsG0180000176.01	MsG0280010233.01	0.828160	1.048825e-54	1.034142e-51
MsG0180000176.01	MsG0280010531.01	0.802041	6.772307e-49	3.283951e-46
MsG0180000176.01	MsG0280010560.01	0.812969	3.244410e-51	2.091835e-48
MsG0180000176.01	MsG0280010976.01	0.810531	1.100485e-50	6.649792e-48
MsG0180000176.01	MsG0280011052.01	0.819791	9.647551e-53	7.498040e-50
MsG0180000176.01	MsG0280011235.01	0.804496	2.101177e-49	1.084940e-46
MsG0180000176.01	MsG0380011669.01	0.824832	6.517126e-54	5.838976e-51
MsG0180000176.01	MsG0380011729.01	0.819903	9.094320e-53	7.089891e-50
MsG0180000176.01	MsG0380012057.01	0.811304	7.484789e-51	4.616575e-48
MsG0180000176.01	MsG0380014541.01	0.808946	2.412519e-50	1.397901e-47
MsG0180000176.01	MsG0380014885.01	0.822509	2.280425e-53	1.912654e-50
MsG0180000176.01	MsG0380014908.01	0.808760	2.643337e-50	1.524119e-47
MsG0180000176.01	MsG0380015607.01	0.817368	3.419584e-52	2.485549e-49
MsG0180000176.01	MsG0380015830.01	0.803140	4.019086e-49	2.004235e-46
MsG0180000176.01	MsG0380016055.01	0.838041	3.639813e-57	4.816794e-54
MsG0180000176.01	MsG0380016133.01	0.808731	2.681515e-50	1.544913e-47
MsG0180000176.01	MsG0380016923.01	0.806346	8.602257e-50	4.658016e-47
MsG0180000176.01	MsG0380017003.01	0.808079	3.694230e-50	2.092369e-47
MsG0180000176.01	MsG0380017210.01	0.819646	1.041284e-52	8.059570e-50
MsG0180000176.01	MsG0380017229.01	0.817021	4.092176e-52	2.946460e-49
MsG0180000176.01	MsG0380017279.01	0.804729	1.878532e-49	9.759368e-47
MsG0180000176.01	MsG0380017719.01	0.806559	7.755802e-50	4.222782e-47
MsG0180000176.01	MsG0380017864.01	0.815226	1.030575e-51	7.063656e-49
MsG0180000176.01	MsG0480018479.01	0.836150	1.107741e-56	1.384000e-53
MsG0180000176.01	MsG0480019289.01	0.811942	5.438870e-51	3.411919e-48
MsG0180000176.01	MsG0480019404.01	0.813054	3.107557e-51	2.008229e-48
MsG0180000176.01	MsG0480021432.01	0.831550	1.566695e-55	1.705909e-52
MsG0180000176.01	MsG0480021489.01	0.802527	5.377687e-49	2.640150e-46
MsG0180000176.01	MsG0480021695.01	0.812171	4.847537e-51	3.060105e-48
MsG0180000176.01	MsG0480021917.01	0.818896	1.543082e-52	1.169841e-49
MsG0180000176.01	MsG0480022207.01	0.820360	7.148895e-53	5.644210e-50
MsG0180000176.01	MsG0480022292.01	0.824821	6.558606e-54	5.874135e-51
MsG0180000176.01	MsG0480022318.01	0.810585	1.071578e-50	6.484686e-48
MsG0180000176.01	MsG0480022467.01	0.800332	1.514878e-48	7.034838e-46
MsG0180000176.01	MsG0480022711.01	0.804410	2.189752e-49	1.128187e-46
MsG0180000176.01	MsG0480022916.01	0.810810	9.580816e-51	5.832775e-48
MsG0180000176.01	MsG0480023025.01	0.825191	5.363233e-54	4.854460e-51
MsG0180000176.01	MsG0480023055.01	0.824427	8.121832e-54	7.191198e-51
MsG0180000176.01	MsG0480023356.01	0.808658	2.779056e-50	1.598097e-47
MsG0180000176.01	MsG0480023415.01	0.819561	1.088694e-52	8.406703e-50
MsG0180000176.01	MsG0480023943.01	0.832476	9.252033e-56	1.035278e-52
MsG0180000176.01	MsG0580024160.01	0.808455	3.071019e-50	1.756803e-47
MsG0180000176.01	MsG0580024251.01	0.801156	1.028425e-48	4.876733e-46
MsG0180000176.01	MsG0580024274.01	0.807151	5.814792e-50	3.214624e-47
MsG0180000176.01	MsG0580024374.01	0.830164	3.426623e-55	3.581788e-52
MsG0180000176.01	MsG0580024409.01	0.814137	1.795199e-51	1.194809e-48
MsG0180000176.01	MsG0580024536.01	0.821056	4.945166e-53	3.981110e-50
MsG0180000176.01	MsG0580024727.01	0.814839	1.255716e-51	8.517215e-49
MsG0180000176.01	MsG0580024996.01	0.807558	4.767527e-50	2.663620e-47
MsG0180000176.01	MsG0580025328.01	0.807296	5.417687e-50	3.006506e-47
MsG0180000176.01	MsG0580025439.01	0.802726	4.892638e-49	2.414430e-46
MsG0180000176.01	MsG0580025903.01	0.872201	3.816018e-67	1.582767e-63
MsG0180000176.01	MsG0580025986.01	0.801921	7.167169e-49	3.464845e-46
MsG0180000176.01	MsG0580025989.01	0.814594	1.423033e-51	9.588687e-49
MsG0180000176.01	MsG0580026225.01	0.824222	9.071856e-54	7.986017e-51
MsG0180000176.01	MsG0580026439.01	0.803073	4.149214e-49	2.065500e-46
MsG0180000176.01	MsG0580027891.01	0.815950	7.108846e-52	4.970323e-49
MsG0180000176.01	MsG0580028918.01	0.824776	6.719330e-54	6.010563e-51
MsG0180000176.01	MsG0580029283.01	0.809574	1.768791e-50	1.042328e-47
MsG0180000176.01	MsG0580029629.01	0.800849	1.188282e-48	5.591096e-46
MsG0180000176.01	MsG0580029658.01	0.800218	1.598025e-48	7.399380e-46
MsG0180000176.01	MsG0580029762.01	0.804381	2.220046e-49	1.142998e-46
MsG0180000176.01	MsG0580030003.01	0.832716	8.067498e-56	9.092503e-53
MsG0180000176.01	MsG0680030351.01	0.834233	3.373178e-56	3.978369e-53
MsG0180000176.01	MsG0680030413.01	0.821077	4.890342e-53	3.939161e-50
MsG0180000176.01	MsG0680030841.01	0.815862	7.438163e-52	5.187980e-49
MsG0180000176.01	MsG0680031051.01	0.808015	3.812106e-50	2.155477e-47
MsG0180000176.01	MsG0680032075.01	0.810736	9.936702e-51	6.037699e-48
MsG0180000176.01	MsG0680034037.01	0.810361	1.197580e-50	7.204202e-48
MsG0180000176.01	MsG0680034757.01	0.816170	6.349203e-52	4.466135e-49
MsG0180000176.01	MsG0780036845.01	0.812328	4.480477e-51	2.840469e-48
MsG0180000176.01	MsG0780037141.01	0.814748	1.315510e-51	8.900872e-49
MsG0180000176.01	MsG0780037287.01	0.807855	4.121917e-50	2.320819e-47
MsG0180000176.01	MsG0780037755.01	0.811875	5.625521e-51	3.522619e-48
MsG0180000176.01	MsG0780038836.01	0.803175	3.951362e-49	1.972316e-46
MsG0180000176.01	MsG0780039340.01	0.802822	4.673755e-49	2.312135e-46
MsG0180000176.01	MsG0780039628.01	0.801190	1.012201e-48	4.803792e-46
MsG0180000176.01	MsG0780040176.01	0.809562	1.779971e-50	1.048541e-47
MsG0180000176.01	MsG0780041006.01	0.801694	7.980606e-49	3.835792e-46
MsG0180000176.01	MsG0780041065.01	0.812331	4.474719e-51	2.837049e-48
MsG0180000176.01	MsG0780041127.01	0.803640	3.165333e-49	1.598933e-46
MsG0180000176.01	MsG0780041187.01	0.805538	1.271692e-49	6.745085e-47
MsG0180000176.01	MsG0780041210.01	0.807660	4.534383e-50	2.540141e-47
MsG0180000176.01	MsG0780041368.01	0.820279	7.459870e-53	5.876663e-50
MsG0180000176.01	MsG0780041469.01	0.803553	3.299883e-49	1.663256e-46
MsG0180000176.01	MsG0780041498.01	0.806330	8.667720e-50	4.691752e-47
MsG0180000176.01	MsG0880042151.01	0.820480	6.706945e-53	5.312959e-50
MsG0180000176.01	MsG0880042206.01	0.803080	4.134300e-49	2.058482e-46
MsG0180000176.01	MsG0880042324.01	0.841298	5.172441e-58	7.566327e-55
MsG0180000176.01	MsG0880042792.01	0.824020	1.011971e-53	8.857242e-51
MsG0180000176.01	MsG0880043116.01	0.806461	8.135327e-50	4.418342e-47
MsG0180000176.01	MsG0880043162.01	0.805141	1.540517e-49	8.088351e-47
MsG0180000176.01	MsG0880043163.01	0.801334	9.458067e-49	4.504964e-46
MsG0180000176.01	MsG0880043532.01	0.835973	1.228269e-56	1.526291e-53
MsG0180000176.01	MsG0880043804.01	0.831285	1.820543e-55	1.966539e-52
MsG0180000176.01	MsG0880045106.01	0.825459	4.634824e-54	4.226777e-51
MsG0180000176.01	MsG0880045381.01	0.801999	6.906335e-49	3.345401e-46
MsG0180000176.01	MsG0880045498.01	0.823040	1.715529e-53	1.460750e-50
MsG0180000176.01	MsG0880045656.01	0.800246	1.577220e-48	7.308152e-46
MsG0180000176.01	MsG0880046113.01	0.808912	2.452984e-50	1.420044e-47
MsG0180000176.01	MsG0880046450.01	0.811204	7.870150e-51	4.841638e-48
MsG0180000176.01	MsG0880046535.01	0.809562	1.779971e-50	1.048541e-47
MsG0180000176.01	MsG0880046561.01	0.834088	3.668073e-56	4.307445e-53

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000176.01.T01	MTR_1g021995	98.077	52	1	0	1	52	210	261	2.85e-29	103

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000176.01.T01	AT1G47750	67.308	52	17	0	1	52	197	248	3.36e-19	77.0

Find 9 sgRNAs with CRISPR-Local

Find 14 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGGCTTTGGATGATATTT+TGG	0.183924	1:-2402107	MsG0180000176.01.T01:CDS
AGATTTGGCTGATGGATTAA+TGG	0.238206	1:-2402125	MsG0180000176.01.T01:CDS
TCCAGCAGATGACAACAAAA+TGG	0.295903	1:+2402060	None:intergenic
GCTTTCAATTGTTCAAGATT+TGG	0.305698	1:-2402140	MsG0180000176.01.T01:CDS
TGATCAGTACTCATAAGAAT+TGG	0.312137	1:-2402024	MsG0180000176.01.T01:CDS
GGCTGATGGATTAATGGCTT+TGG	0.368741	1:-2402119	MsG0180000176.01.T01:CDS
GATCAGTACTCATAAGAATT+GGG	0.413893	1:-2402023	MsG0180000176.01.T01:CDS
ATTGTTCAAGATTTGGCTGA+TGG	0.452124	1:-2402133	MsG0180000176.01.T01:CDS
CCAGCAGATGACAACAAAAT+GGG	0.495057	1:+2402061	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	GATCAGTACTCATAAGAATT+GGG	-	Chr1:2402137-2402156	MsG0180000176.01.T01:CDS	30.0%
	GCTTTCAATTGTTCAAGATT+TGG	-	Chr1:2402020-2402039	MsG0180000176.01.T01:CDS	30.0%
	TGATCAGTACTCATAAGAAT+TGG	-	Chr1:2402136-2402155	MsG0180000176.01.T01:CDS	30.0%
!!	CTTTGGATGATATTTTGGAT+GGG	-	Chr1:2402058-2402077	MsG0180000176.01.T01:CDS	30.0%
!!!	AATGGCTTTGGATGATATTT+TGG	-	Chr1:2402053-2402072	MsG0180000176.01.T01:CDS	30.0%
	ATTGTTCAAGATTTGGCTGA+TGG	-	Chr1:2402027-2402046	MsG0180000176.01.T01:CDS	35.0%
!!	AGATTTGGCTGATGGATTAA+TGG	-	Chr1:2402035-2402054	MsG0180000176.01.T01:CDS	35.0%
!!	GATGATATTTTGGATGGGAA+GGG	-	Chr1:2402063-2402082	MsG0180000176.01.T01:CDS	35.0%
!!	GCTTTGGATGATATTTTGGA+TGG	-	Chr1:2402057-2402076	MsG0180000176.01.T01:CDS	35.0%
	CCAGCAGATGACAACAAAAT+GGG	+	Chr1:2402102-2402121	None:intergenic	40.0%
	TCCAGCAGATGACAACAAAA+TGG	+	Chr1:2402103-2402122	None:intergenic	40.0%
!!	GGATGATATTTTGGATGGGA+AGG	-	Chr1:2402062-2402081	MsG0180000176.01.T01:CDS	40.0%
!!	CCCATTTTGTTGTCATCTGC+TGG	-	Chr1:2402099-2402118	MsG0180000176.01.T01:CDS	45.0%
!!	GGCTGATGGATTAATGGCTT+TGG	-	Chr1:2402041-2402060	MsG0180000176.01.T01:CDS	45.0%

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	2402012	2402170	2402012	ID=MsG0180000176.01;Name=MsG0180000176.01
Chr1	mRNA	2402012	2402170	2402012	ID=MsG0180000176.01.T01;Parent=MsG0180000176.01;Name=MsG0180000176.01.T01;_AED=0.43;_eAED=0.43;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|52
Chr1	exon	2402012	2402170	2402012	ID=MsG0180000176.01.T01:exon:6653;Parent=MsG0180000176.01.T01
Chr1	CDS	2402012	2402170	2402012	ID=MsG0180000176.01.T01:cds;Parent=MsG0180000176.01.T01

Gene Sequence	>MsG0180000176.01.T01 ATGAAGAAGCTTTCAATTGTTCAAGATTTGGCTGATGGATTAATGGCTTTGGATGATATTTTGGATGGGAAGGGATTGTTTTCGAAGCCCATTTTGTTGTCATCTGCTGGACTTTTGTCTGCATTGATCAGTACTCATAAGAATTGGGTTTCTTGCTGA
Protein sequence	>MsG0180000176.01.T01 MKKLSIVQDLADGLMALDDILDGKGLFSKPILLSSAGLLSALISTHKNWVSC*