AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040041.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040041.01.T01 MTR_7g083570 96.154 104 1 2 28 131 47 147 9.22e-64 199
MsG0780040041.01.T01 MTR_7g083570 86.765 68 9 0 131 198 221 288 2.33e-36 128
MsG0780040041.01.T01 MTR_1g114680 57.143 56 24 0 131 186 107 162 1.69e-13 66.2
MsG0780040041.01.T01 MTR_2g076350 51.923 52 25 0 131 182 172 223 1.14e-12 65.1
MsG0780040041.01.T01 MTR_3g100750 48.148 54 28 0 131 184 202 255 1.66e-12 64.7
MsG0780040041.01.T01 MTR_8g069110 48.148 54 28 0 131 184 214 267 7.81e-12 63.2
MsG0780040041.01.T01 MTR_1g114640 49.180 61 31 0 124 184 158 218 1.94e-11 61.2
MsG0780040041.01.T01 MTR_1g114690 46.032 63 34 0 124 186 155 217 3.36e-11 60.5
MsG0780040041.01.T01 MTR_8g100065 42.254 71 38 1 118 185 113 183 7.04e-11 59.3
MsG0780040041.01.T01 MTR_6g077990 45.455 55 30 0 131 185 143 197 9.95e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040041.01.T01 AT5G13200 50.459 109 42 4 24 131 36 133 1.61e-26 101
MsG0780040041.01.T01 AT5G13200 50.926 108 41 4 24 130 36 132 4.14e-26 101
MsG0780040041.01.T01 AT5G13200 59.649 57 23 0 131 187 207 263 5.46e-18 80.1
MsG0780040041.01.T01 AT4G40100 46.269 67 35 1 119 184 150 216 8.71e-13 65.1
MsG0780040041.01.T01 AT1G28200 46.296 54 29 0 131 184 201 254 8.93e-13 65.5
MsG0780040041.01.T01 AT1G28200 46.296 54 29 0 131 184 201 254 8.93e-13 65.5
MsG0780040041.01.T01 AT2G22475 48.148 54 28 0 131 184 238 291 8.01e-12 63.2

Find 65 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATATGTTTGATTCTTCT+TGG 0.176506 7:-72350690 MsG0780040041.01.T01:CDS
CTGTATCATTTCTTCCTCTA+AGG 0.221197 7:-72348433 MsG0780040041.01.T01:three_prime_UTR
CATCAGGTGATGATTGGTTT+TGG 0.254420 7:+72350981 None:intergenic
ACGATTGTGCCAGATGTTAT+TGG 0.273073 7:+72350645 None:intergenic
CTGTGATTTGCAGTTAAAAC+AGG 0.342749 7:-72349836 MsG0780040041.01.T01:intron
GGTGGTGCTGGTGATGCAAA+TGG 0.353423 7:+72350953 None:intergenic
TTCATTGTCTTCAGCTGCAA+TGG 0.365963 7:-72349810 MsG0780040041.01.T01:CDS
TTGTTGTCTGGATGACTACT+TGG 0.395182 7:+72350850 None:intergenic
ACAGAAATGGTTGGATTTGA+AGG 0.396232 7:+72351112 None:intergenic
AGGAGACAATACACTGTTGT+TGG 0.401789 7:+72351164 None:intergenic
TCATTGTCTTCAGCTGCAAT+GGG 0.409086 7:-72349809 MsG0780040041.01.T01:CDS
GCCCGTCAACTGTCACAATC+TGG 0.413594 7:+72348739 None:intergenic
ATCATGCAACAACTGAGAAC+TGG 0.426756 7:-72350901 MsG0780040041.01.T01:CDS
ATGGTGCCTTTAGCGAAGAT+TGG 0.428167 7:-72348810 MsG0780040041.01.T01:CDS
GATGATGATGGTGGTGGTGC+TGG 0.444267 7:+72350941 None:intergenic
ACTGTTCCAATCTTCGCTAA+AGG 0.459341 7:+72348804 None:intergenic
AAATTGCAATAACACCTTAG+AGG 0.462985 7:+72348419 None:intergenic
TGTTCATGTTTGTATGTAAG+AGG 0.483355 7:+72351020 None:intergenic
TTACAAACTGCTTCTGCTGA+TGG 0.483740 7:-72350817 MsG0780040041.01.T01:CDS
GAGAACTGGAACACATATGA+TGG 0.487964 7:-72350887 MsG0780040041.01.T01:CDS
GTCGTTGGTACGGCTACGCC+GGG 0.491352 7:+72348636 None:intergenic
GCACGTATGGATGATCTTGC+TGG 0.491754 7:+72350761 None:intergenic
GTGGTGCTGGTGATGCAAAT+GGG 0.493613 7:+72350954 None:intergenic
ATCCAGATTGTGACAGTTGA+CGG 0.497932 7:-72348741 MsG0780040041.01.T01:CDS
TAAGCCTAGCAGTAGTCCTA+TGG 0.515052 7:-72350722 MsG0780040041.01.T01:CDS
AAGCTACCGCCAATAACATC+TGG 0.518887 7:-72350654 MsG0780040041.01.T01:CDS
CAAGGTTGAATGAATTATGT+AGG 0.520425 7:+72351087 None:intergenic
GGATGACTACTTGGTACAGC+TGG 0.522699 7:+72350859 None:intergenic
CTACTGCTAGGCTTATCAAC+AGG 0.523543 7:+72350730 None:intergenic
AATTATGTAGGAAACAGAAA+TGG 0.528984 7:+72351099 None:intergenic
TGATTCTCCCTCATGATCAC+AGG 0.530214 7:+72348777 None:intergenic
TCCAGATTGTGACAGTTGAC+GGG 0.531799 7:-72348740 MsG0780040041.01.T01:CDS
ACAGGACTGTGTTGCACGTA+TGG 0.537458 7:+72350748 None:intergenic
CACAAACACATTCCAAGAGA+AGG 0.537896 7:+72348585 None:intergenic
ACAAACACATTCCAAGAGAA+GGG 0.539665 7:+72348586 None:intergenic
CAGAAATGGTTGGATTTGAA+GGG 0.544212 7:+72351113 None:intergenic
GACTAACTAGTTCTTCAAGC+TGG 0.556433 7:-72348616 MsG0780040041.01.T01:exon
CAGTTAATCCTGTGATCATG+AGG 0.557822 7:-72348785 MsG0780040041.01.T01:CDS
ATTGCAGCTGAAGACAATGA+AGG 0.560885 7:+72349812 None:intergenic
ACAAGGACAACCTCAGCCTC+AGG 0.564940 7:-72350794 MsG0780040041.01.T01:CDS
TTGAAGAACTAGTTAGTCGT+TGG 0.566224 7:+72348621 None:intergenic
ATGTAGGAAACAGAAATGGT+TGG 0.569671 7:+72351103 None:intergenic
AGTCGTTGGTACGGCTACGC+CGG 0.571636 7:+72348635 None:intergenic
GAACTAGTTAGTCGTTGGTA+CGG 0.588752 7:+72348626 None:intergenic
ACTGCTTCTGCTGATGGACA+AGG 0.594269 7:-72350811 MsG0780040041.01.T01:CDS
ATTGTGCCAGATGTTATTGG+CGG 0.596019 7:+72350648 None:intergenic
ATATGAAGAATTGATTCCAT+AGG 0.605924 7:+72350706 None:intergenic
TAGTAATGAACCTGAGGCTG+AGG 0.610263 7:+72350784 None:intergenic
GATTCCATAGGACTACTGCT+AGG 0.615191 7:+72350718 None:intergenic
TAAAGCAGTAAAGAACCTAT+CGG 0.619248 7:-72348682 MsG0780040041.01.T01:CDS
AGAACTGGAACACATATGAT+GGG 0.622421 7:-72350886 MsG0780040041.01.T01:CDS
GCAGTAAAGAACCTATCGGA+AGG 0.626352 7:-72348678 MsG0780040041.01.T01:CDS
GTTAAGCAAAGAAGCATAGT+CGG 0.633624 7:-72351213 MsG0780040041.01.T01:five_prime_UTR
AATGTGAGATGCCTTCCGAT+AGG 0.639873 7:+72348667 None:intergenic
GCAAAGAAGCATAGTCGGTG+TGG 0.644231 7:-72351208 MsG0780040041.01.T01:five_prime_UTR
TGCTGGTAGTAATGAACCTG+AGG 0.645046 7:+72350778 None:intergenic
ACAGATGATGATGATGGTGG+TGG 0.651576 7:+72350935 None:intergenic
CAAACACATTCCAAGAGAAG+GGG 0.652137 7:+72348587 None:intergenic
GGTGGAACAGATGATGATGA+TGG 0.664891 7:+72350929 None:intergenic
ACATATATCAATATTAACTG+TGG 0.669725 7:+72348457 None:intergenic
AGTTAATCCTGTGATCATGA+GGG 0.672652 7:-72348784 MsG0780040041.01.T01:CDS
ATGAGAGAGAGATTCAGACA+AGG 0.673168 7:+72351069 None:intergenic
TGTGATTTGCAGTTAAAACA+GGG 0.680349 7:-72349835 MsG0780040041.01.T01:intron
CATTGTCTTCAGCTGCAATG+GGG 0.684360 7:-72349808 MsG0780040041.01.T01:CDS
GGAACAGATGATGATGATGG+TGG 0.687919 7:+72350932 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAATATGAAAATAGTTT+TGG + Chr7:72349501-72349520 None:intergenic 10.0%
!!! CATGTATTTATTTTATATTA+TGG + Chr7:72350684-72350703 None:intergenic 10.0%
!!! TAATTTAATTGAATTTTATG+AGG - Chr7:72349204-72349223 MsG0780040041.01.T01:intron 10.0%
!! CTGTTCATAAATATAATAAA+CGG + Chr7:72350081-72350100 None:intergenic 15.0%
!!! AATTTTTATTAAAATTGTGG+TGG + Chr7:72349666-72349685 None:intergenic 15.0%
!!! TTGATTATGTAAATTTTGTA+GGG - Chr7:72351122-72351141 MsG0780040041.01.T01:five_prime_UTR 15.0%
!!! TTTCATATTTTATACTAAGT+TGG - Chr7:72349508-72349527 MsG0780040041.01.T01:intron 15.0%
!!! TTTTAATTTCTTGTTTGAAA+GGG - Chr7:72351067-72351086 MsG0780040041.01.T01:five_prime_UTR 15.0%
!! AAAATTTCTATTACACCTTT+CGG - Chr7:72350711-72350730 MsG0780040041.01.T01:CDS 20.0%
!! ACATATATCAATATTAACTG+TGG + Chr7:72351171-72351190 None:intergenic 20.0%
!! ATTGAAATGAATGTTTGATA+TGG - Chr7:72350755-72350774 MsG0780040041.01.T01:CDS 20.0%
!! CATAAACACTTATTAGTATA+AGG + Chr7:72349283-72349302 None:intergenic 20.0%
!! CATTTCAATTTCATAGTTTA+AGG + Chr7:72350744-72350763 None:intergenic 20.0%
!! TAGATGAATATGATAAGTAA+GGG + Chr7:72349985-72350004 None:intergenic 20.0%
!! TATCAATCTATCTAATATAG+AGG + Chr7:72349028-72349047 None:intergenic 20.0%
!!! ATATATCTATGAGAGTTTTT+TGG - Chr7:72349580-72349599 MsG0780040041.01.T01:intron 20.0%
!!! GTTATTGCAATTTTACTTTT+CGG - Chr7:72351216-72351235 MsG0780040041.01.T01:five_prime_UTR 20.0%
!!! GTTGATTATGTAAATTTTGT+AGG - Chr7:72351121-72351140 MsG0780040041.01.T01:five_prime_UTR 20.0%
!!! GTTTTAATTTCTTGTTTGAA+AGG - Chr7:72351066-72351085 MsG0780040041.01.T01:five_prime_UTR 20.0%
!!! TATATCTATGAGAGTTTTTT+GGG - Chr7:72349581-72349600 MsG0780040041.01.T01:intron 20.0%
! AATTATGTAGGAAACAGAAA+TGG + Chr7:72348529-72348548 None:intergenic 25.0%
! ACTCTCATAGATATATAGTA+AGG + Chr7:72349576-72349595 None:intergenic 25.0%
! ATTTATGCTAACAATATTGC+TGG + Chr7:72350416-72350435 None:intergenic 25.0%
! CTAGATGAATATGATAAGTA+AGG + Chr7:72349986-72350005 None:intergenic 25.0%
! TAATCCACTCAAGTAATTTA+CGG + Chr7:72350526-72350545 None:intergenic 25.0%
! TTATATTGTGTAATAGGTGA+TGG - Chr7:72350796-72350815 MsG0780040041.01.T01:CDS 25.0%
! TTCATATGTTTGATTCTTCT+TGG - Chr7:72348935-72348954 MsG0780040041.01.T01:intron 25.0%
!! AATTAAGTTTGTTTCCAGAT+AGG - Chr7:72349315-72349334 MsG0780040041.01.T01:intron 25.0%
!! ATATGAAGAATTGATTCCAT+AGG + Chr7:72348922-72348941 None:intergenic 25.0%
!! TAAAGTTCTGATAATATCCA+CGG + Chr7:72349633-72349652 None:intergenic 25.0%
!! TCATTTTCTAACTTCAAAAC+TGG - Chr7:72350366-72350385 MsG0780040041.01.T01:intron 25.0%
!!! CTATTGAACAAATTTTGACA+AGG + Chr7:72350105-72350124 None:intergenic 25.0%
!!! GACTTGTTATATTGTGTAAT+AGG - Chr7:72350790-72350809 MsG0780040041.01.T01:CDS 25.0%
!!! TAAATTACTTGAGTGGATTA+GGG - Chr7:72350526-72350545 MsG0780040041.01.T01:intron 25.0%
!!! TAACATGTTACGTGTTTTTA+AGG + Chr7:72348484-72348503 None:intergenic 25.0%
!!! TACAATAGTCAATTTGTTGT+TGG - Chr7:72350298-72350317 MsG0780040041.01.T01:intron 25.0%
AAAATGAACACATGAGAGAA+CGG + Chr7:72350353-72350372 None:intergenic 30.0%
AAATTGCAAGCAATGAAACA+CGG - Chr7:72350438-72350457 MsG0780040041.01.T01:intron 30.0%
AAATTGCAATAACACCTTAG+AGG + Chr7:72351209-72351228 None:intergenic 30.0%
ACGTCATATATGTAGTACTA+CGG - Chr7:72350562-72350581 MsG0780040041.01.T01:intron 30.0%
AGATATATAGTAAGGAGCTT+AGG + Chr7:72349568-72349587 None:intergenic 30.0%
CAAGGTTGAATGAATTATGT+AGG + Chr7:72348541-72348560 None:intergenic 30.0%
TAAAGCAGTAAAGAACCTAT+CGG - Chr7:72350943-72350962 MsG0780040041.01.T01:CDS 30.0%
TAGTCTAGCATCTCATAATT+TGG - Chr7:72349345-72349364 MsG0780040041.01.T01:intron 30.0%
TCACATATTGACACAAAAGA+GGG + Chr7:72350643-72350662 None:intergenic 30.0%
TGTTCATGTTTGTATGTAAG+AGG + Chr7:72348608-72348627 None:intergenic 30.0%
TTATGAGATGCTAGACTATT+AGG + Chr7:72349343-72349362 None:intergenic 30.0%
! GTAAATTACTTGAGTGGATT+AGG - Chr7:72350525-72350544 MsG0780040041.01.T01:intron 30.0%
! TGTGATTTGCAGTTAAAACA+GGG - Chr7:72349790-72349809 MsG0780040041.01.T01:intron 30.0%
! TTGTTCAATAGAGCATTAGA+GGG - Chr7:72350114-72350133 MsG0780040041.01.T01:intron 30.0%
! TTTGTTCAATAGAGCATTAG+AGG - Chr7:72350113-72350132 MsG0780040041.01.T01:intron 30.0%
!! AATTTGTTGTTGGAGACAAT+TGG - Chr7:72350308-72350327 MsG0780040041.01.T01:intron 30.0%
!! TATATCGAGCATTGATAAGT+AGG - Chr7:72350161-72350180 MsG0780040041.01.T01:intron 30.0%
AAATGAACACATGAGAGAAC+GGG + Chr7:72350352-72350371 None:intergenic 35.0%
AAGCTGGTATTGTTGTAATC+TGG + Chr7:72350589-72350608 None:intergenic 35.0%
ACAAACACATTCCAAGAGAA+GGG + Chr7:72351042-72351061 None:intergenic 35.0%
ACAGAAATGGTTGGATTTGA+AGG + Chr7:72348516-72348535 None:intergenic 35.0%
ACTGTAAAAGCGATATCAGA+GGG - Chr7:72349852-72349871 MsG0780040041.01.T01:intron 35.0%
AGAACTGGAACACATATGAT+GGG - Chr7:72348739-72348758 MsG0780040041.01.T01:CDS 35.0%
AGTTAATCCTGTGATCATGA+GGG - Chr7:72350841-72350860 MsG0780040041.01.T01:CDS 35.0%
AGTTCCGTAAATTACTTGAG+TGG - Chr7:72350519-72350538 MsG0780040041.01.T01:intron 35.0%
ATGTAGGAAACAGAAATGGT+TGG + Chr7:72348525-72348544 None:intergenic 35.0%
CAGAAATGGTTGGATTTGAA+GGG + Chr7:72348515-72348534 None:intergenic 35.0%
CTCACATATTGACACAAAAG+AGG + Chr7:72350644-72350663 None:intergenic 35.0%
CTGTATCATTTCTTCCTCTA+AGG - Chr7:72351192-72351211 MsG0780040041.01.T01:five_prime_UTR 35.0%
CTTACTTTCATAAGCTCTCT+AGG - Chr7:72349164-72349183 MsG0780040041.01.T01:intron 35.0%
GTTACCTTTCAACAACAACA+GGG - Chr7:72349946-72349965 MsG0780040041.01.T01:intron 35.0%
TAGACTATTAGGTTCCTATC+TGG + Chr7:72349332-72349351 None:intergenic 35.0%
TGTTACCTTTCAACAACAAC+AGG - Chr7:72349945-72349964 MsG0780040041.01.T01:intron 35.0%
TTGAAGAACTAGTTAGTCGT+TGG + Chr7:72351007-72351026 None:intergenic 35.0%
TTGCCTAACATACACATGAA+GGG - Chr7:72349727-72349746 MsG0780040041.01.T01:intron 35.0%
TTTGCCTAACATACACATGA+AGG - Chr7:72349726-72349745 MsG0780040041.01.T01:intron 35.0%
! AATCCTTCTAGAAGTAAGGA+GGG + Chr7:72349070-72349089 None:intergenic 35.0%
! AGTCAATCCTTCTAGAAGTA+AGG + Chr7:72349074-72349093 None:intergenic 35.0%
! CTGTGATTTGCAGTTAAAAC+AGG - Chr7:72349789-72349808 MsG0780040041.01.T01:intron 35.0%
! GTTAAGCAAAGAAGCATAGT+CGG - Chr7:72348412-72348431 MsG0780040041.01.T01:three_prime_UTR 35.0%
! TCAGTTGTTGCATGATTTTG+TGG + Chr7:72348720-72348739 None:intergenic 35.0%
!!! AAAGCTGCTTTTTTGTTGTC+TGG + Chr7:72348790-72348809 None:intergenic 35.0%
!!! GTCTTTTTCAGCTTCTCATT+TGG + Chr7:72349918-72349937 None:intergenic 35.0%
ACGATTGTGCCAGATGTTAT+TGG + Chr7:72348983-72349002 None:intergenic 40.0%
ACGGGATTAATCACCGAATT+CGG + Chr7:72350334-72350353 None:intergenic 40.0%
ACTGTTCCAATCTTCGCTAA+AGG + Chr7:72350824-72350843 None:intergenic 40.0%
AGGAGACAATACACTGTTGT+TGG + Chr7:72348464-72348483 None:intergenic 40.0%
ATAAGTAGGTAGACACCTGA+GGG - Chr7:72350175-72350194 MsG0780040041.01.T01:intron 40.0%
ATCATGCAACAACTGAGAAC+TGG - Chr7:72348724-72348743 MsG0780040041.01.T01:CDS 40.0%
ATCCAGATTGTGACAGTTGA+CGG - Chr7:72350884-72350903 MsG0780040041.01.T01:CDS 40.0%
ATGAGAGAGAGATTCAGACA+AGG + Chr7:72348559-72348578 None:intergenic 40.0%
ATTGACACAAAAGAGGGACA+AGG + Chr7:72350637-72350656 None:intergenic 40.0%
ATTGCAGCTGAAGACAATGA+AGG + Chr7:72349816-72349835 None:intergenic 40.0%
ATTGTGCCAGATGTTATTGG+CGG + Chr7:72348980-72348999 None:intergenic 40.0%
CAAACACATTCCAAGAGAAG+GGG + Chr7:72351041-72351060 None:intergenic 40.0%
CACAAACACATTCCAAGAGA+AGG + Chr7:72351043-72351062 None:intergenic 40.0%
CAGTTAATCCTGTGATCATG+AGG - Chr7:72350840-72350859 MsG0780040041.01.T01:CDS 40.0%
GAACTAGTTAGTCGTTGGTA+CGG + Chr7:72351002-72351021 None:intergenic 40.0%
GACTGTAAAAGCGATATCAG+AGG - Chr7:72349851-72349870 MsG0780040041.01.T01:intron 40.0%
GAGAACTGGAACACATATGA+TGG - Chr7:72348738-72348757 MsG0780040041.01.T01:CDS 40.0%
GGTCGTTTGTTTACGCAATT+CGG - Chr7:72350459-72350478 MsG0780040041.01.T01:intron 40.0%
TAACCCTCCTTACTTCTAGA+AGG - Chr7:72349064-72349083 MsG0780040041.01.T01:intron 40.0%
TCATTGTCTTCAGCTGCAAT+GGG - Chr7:72349816-72349835 MsG0780040041.01.T01:CDS 40.0%
TGTTCCATTATACTACCCTC+AGG + Chr7:72350193-72350212 None:intergenic 40.0%
TTACAAACTGCTTCTGCTGA+TGG - Chr7:72348808-72348827 MsG0780040041.01.T01:CDS 40.0%
TTCATTGTCTTCAGCTGCAA+TGG - Chr7:72349815-72349834 MsG0780040041.01.T01:CDS 40.0%
TTGACACAAAAGAGGGACAA+GGG + Chr7:72350636-72350655 None:intergenic 40.0%
TTGTTGTCTGGATGACTACT+TGG + Chr7:72348778-72348797 None:intergenic 40.0%
! AGTTCTGATAATATCCACGG+TGG + Chr7:72349630-72349649 None:intergenic 40.0%
! CAATCCTTCTAGAAGTAAGG+AGG + Chr7:72349071-72349090 None:intergenic 40.0%
! GACTAACTAGTTCTTCAAGC+TGG - Chr7:72351009-72351028 MsG0780040041.01.T01:five_prime_UTR 40.0%
! GGGTAGTATAATGGAACAAG+TGG - Chr7:72350195-72350214 MsG0780040041.01.T01:intron 40.0%
! GGTTTTCATCAGGTGATGAT+TGG + Chr7:72348653-72348672 None:intergenic 40.0%
! GTTGTTGCATGATTTTGTGG+TGG + Chr7:72348717-72348736 None:intergenic 40.0%
! GTTTAAGGCTCTTTACCGAA+AGG + Chr7:72350729-72350748 None:intergenic 40.0%
!! GATGCAAATGGGTTTTCATC+AGG + Chr7:72348663-72348682 None:intergenic 40.0%
!!! CATCAGGTGATGATTGGTTT+TGG + Chr7:72348647-72348666 None:intergenic 40.0%
!!! GGGCATGATTTTTGGTTCAT+GGG - Chr7:72350905-72350924 MsG0780040041.01.T01:CDS 40.0%
AAGCTACCGCCAATAACATC+TGG - Chr7:72348971-72348990 MsG0780040041.01.T01:intron 45.0%
AATGTGAGATGCCTTCCGAT+AGG + Chr7:72350961-72350980 None:intergenic 45.0%
AGGGTGCAGTGAAACTCAAA+GGG + Chr7:72350025-72350044 None:intergenic 45.0%
ATGGTGCCTTTAGCGAAGAT+TGG - Chr7:72350815-72350834 MsG0780040041.01.T01:CDS 45.0%
CATTGTCTTCAGCTGCAATG+GGG - Chr7:72349817-72349836 MsG0780040041.01.T01:CDS 45.0%
CCTAACATACACATGAAGGG+CGG - Chr7:72349730-72349749 MsG0780040041.01.T01:intron 45.0%
CTACTGCTAGGCTTATCAAC+AGG + Chr7:72348898-72348917 None:intergenic 45.0%
GACACCTGAGGGTAGTATAA+TGG - Chr7:72350186-72350205 MsG0780040041.01.T01:intron 45.0%
GATAAGTAGGTAGACACCTG+AGG - Chr7:72350174-72350193 MsG0780040041.01.T01:intron 45.0%
GATTCCATAGGACTACTGCT+AGG + Chr7:72348910-72348929 None:intergenic 45.0%
GCAGTAAAGAACCTATCGGA+AGG - Chr7:72350947-72350966 MsG0780040041.01.T01:CDS 45.0%
GTAAAAGCGATATCAGAGGG+TGG - Chr7:72349855-72349874 MsG0780040041.01.T01:intron 45.0%
GTCGCAAAGGTAGACACAAT+TGG + Chr7:72350485-72350504 None:intergenic 45.0%
GTGGATCGAAACATGCTCTA+AGG + Chr7:72349611-72349630 None:intergenic 45.0%
TAAGCCTAGCAGTAGTCCTA+TGG - Chr7:72348903-72348922 MsG0780040041.01.T01:intron 45.0%
TAAGTAAGGGTTCCTGCAAC+AGG + Chr7:72349972-72349991 None:intergenic 45.0%
TAGCTGCTCTATAGTCGCAA+AGG + Chr7:72350498-72350517 None:intergenic 45.0%
TAGTAATGAACCTGAGGCTG+AGG + Chr7:72348844-72348863 None:intergenic 45.0%
TCCAGATTGTGACAGTTGAC+GGG - Chr7:72350885-72350904 MsG0780040041.01.T01:CDS 45.0%
TGACACAAAAGAGGGACAAG+GGG + Chr7:72350635-72350654 None:intergenic 45.0%
TGATTCTCCCTCATGATCAC+AGG + Chr7:72350851-72350870 None:intergenic 45.0%
TGCTGGTAGTAATGAACCTG+AGG + Chr7:72348850-72348869 None:intergenic 45.0%
TGGAGACAATTGGCCGAATT+CGG - Chr7:72350318-72350337 MsG0780040041.01.T01:intron 45.0%
TGTAGTAGCTCCAAGTCACT+TGG + Chr7:72350051-72350070 None:intergenic 45.0%
! AGTGACTTGGAGCTACTACA+AGG - Chr7:72350051-72350070 MsG0780040041.01.T01:intron 45.0%
! ATCTCACATTTTGTTGCGCC+CGG - Chr7:72350971-72350990 MsG0780040041.01.T01:exon 45.0%
! CTGGAATTTTCCCCTTCTCT+TGG - Chr7:72351028-72351047 MsG0780040041.01.T01:five_prime_UTR 45.0%
! GGTGGAACAGATGATGATGA+TGG + Chr7:72348699-72348718 None:intergenic 45.0%
!! ACAGATGATGATGATGGTGG+TGG + Chr7:72348693-72348712 None:intergenic 45.0%
!! CAGTTGACGGGCATGATTTT+TGG - Chr7:72350897-72350916 MsG0780040041.01.T01:CDS 45.0%
!! GGAACAGATGATGATGATGG+TGG + Chr7:72348696-72348715 None:intergenic 45.0%
!!! CGGGCATGATTTTTGGTTCA+TGG - Chr7:72350904-72350923 MsG0780040041.01.T01:CDS 45.0%
!!! TATAATTTTTATTAAAATTG+TGG + Chr7:72349669-72349688 None:intergenic 5.0%
ACAGGACTGTGTTGCACGTA+TGG + Chr7:72348880-72348899 None:intergenic 50.0%
AGTAGCTCCAAGTCACTTGG+CGG + Chr7:72350048-72350067 None:intergenic 50.0%
CCGCCCTTCATGTGTATGTT+AGG + Chr7:72349733-72349752 None:intergenic 50.0%
GCACGTATGGATGATCTTGC+TGG + Chr7:72348867-72348886 None:intergenic 50.0%
GGATGACTACTTGGTACAGC+TGG + Chr7:72348769-72348788 None:intergenic 50.0%
! ACTGCTTCTGCTGATGGACA+AGG - Chr7:72348814-72348833 MsG0780040041.01.T01:CDS 50.0%
! CAGGCCCTGTTGTTGTTGAA+AGG + Chr7:72349953-72349972 None:intergenic 50.0%
! GAGGGTGCAGTGAAACTCAA+AGG + Chr7:72350026-72350045 None:intergenic 50.0%
! GCAAAGAAGCATAGTCGGTG+TGG - Chr7:72348417-72348436 MsG0780040041.01.T01:three_prime_UTR 50.0%
!! GTGGTGCTGGTGATGCAAAT+GGG + Chr7:72348674-72348693 None:intergenic 50.0%
ACAACAACAGGGCCTGTTGC+AGG - Chr7:72349957-72349976 MsG0780040041.01.T01:intron 55.0%
ACAAGGACAACCTCAGCCTC+AGG - Chr7:72348831-72348850 MsG0780040041.01.T01:intron 55.0%
CACAAAAGAGGGACAAGGGG+TGG + Chr7:72350632-72350651 None:intergenic 55.0%
CTAGCATAGCGTAGCGAAGC+TGG + Chr7:72350605-72350624 None:intergenic 55.0%
GAGCATGTTTCGATCCACCG+TGG - Chr7:72349613-72349632 MsG0780040041.01.T01:intron 55.0%
GCCCGTCAACTGTCACAATC+TGG + Chr7:72350889-72350908 None:intergenic 55.0%
!! GATGATGATGGTGGTGGTGC+TGG + Chr7:72348687-72348706 None:intergenic 55.0%
!! GGTGGTGCTGGTGATGCAAA+TGG + Chr7:72348675-72348694 None:intergenic 55.0%
AGCTCCAAGTCACTTGGCGG+AGG + Chr7:72350045-72350064 None:intergenic 60.0%
AGTCGTTGGTACGGCTACGC+CGG + Chr7:72350993-72351012 None:intergenic 60.0%
GCTCCAAGTCACTTGGCGGA+GGG + Chr7:72350044-72350063 None:intergenic 60.0%
GCACCCTCCGCCAAGTGACT+TGG - Chr7:72350038-72350057 MsG0780040041.01.T01:intron 65.0%
GTCGTTGGTACGGCTACGCC+GGG + Chr7:72350992-72351011 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 72348411 72351236 72348411 ID=MsG0780040041.01;Name=MsG0780040041.01
Chr7 mRNA 72348411 72351236 72348411 ID=MsG0780040041.01.T01;Parent=MsG0780040041.01;Name=MsG0780040041.01.T01;_AED=0.36;_eAED=0.36;_QI=253|0.5|0.66|1|0|0.66|3|218|198
Chr7 exon 72348411 72348835 72348411 ID=MsG0780040041.01.T01:exon:12810;Parent=MsG0780040041.01.T01
Chr7 exon 72349793 72349845 72349793 ID=MsG0780040041.01.T01:exon:12809;Parent=MsG0780040041.01.T01
Chr7 exon 72350647 72351236 72350647 ID=MsG0780040041.01.T01:exon:12808;Parent=MsG0780040041.01.T01
Chr7 five_prime_UTR 72350984 72351236 72350984 ID=MsG0780040041.01.T01:five_prime_utr;Parent=MsG0780040041.01.T01
Chr7 CDS 72350647 72350983 72350647 ID=MsG0780040041.01.T01:cds;Parent=MsG0780040041.01.T01
Chr7 CDS 72349793 72349845 72349793 ID=MsG0780040041.01.T01:cds;Parent=MsG0780040041.01.T01
Chr7 CDS 72348629 72348835 72348629 ID=MsG0780040041.01.T01:cds;Parent=MsG0780040041.01.T01
Chr7 three_prime_UTR 72348411 72348628 72348411 ID=MsG0780040041.01.T01:three_prime_utr;Parent=MsG0780040041.01.T01
Gene Sequence

>MsG0780040041.01.T01

ATGAAAACCCATTTGCATCACCAGCACCACCACCATCATCATCATCTGTTCCACCACAAAATCATGCAACAACTGAGAACTGGAACACATATGATGGGAGCACCAGCTGTACCAAGTAGTCATCCAGACAACAAAAAAGCAGCTTTACAAACTGCTTCTGCTGATGGACAAGGACAACCTCAGCCTCAGGTTCATTACTACCAGCAAGATCATCCATACGTGCAACACAGTCCTGTTGATAAGCCTAGCAGTAGTCCTATGGAATCAATTCTTCATATGTTTGATTCTTCTTGGAGTAAAAAAGCTGAAGCTACCGCCAATAACATCTGGCACAATCTTAAAACAGGGCCTTCATTGTCTTCAGCTGCAATGGGGAAGATGAATCTGACTGTGATGGTGCCTTTAGCGAAGATTGGAACAGTTAATCCTGTGATCATGAGGGAGAATCAATCAGAGAAGTATATCCAGATTGTGACAGTTGACGGGCATGATTTTTGGTTCATGGGTTGTTTTAATTATGATAAAGCAGTAAAGAACCTATCGGAAGGCATCTCACATTTTGTTGCGCCCGGCGTAGCCGTACCAACGACTAACTAG
Protein sequence

>MsG0780040041.01.T01

MKTHLHHQHHHHHHHLFHHKIMQQLRTGTHMMGAPAVPSSHPDNKKAALQTASADGQGQPQPQVHYYQQDHPYVQHSPVDKPSSSPMESILHMFDSSWSKKAEATANNIWHNLKTGPSLSSAAMGKMNLTVMVPLAKIGTVNPVIMRENQSEKYIQIVTVDGHDFWFMGCFNYDKAVKNLSEGISHFVAPGVAVPTTN*