AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045458.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045458.01.T01 MTR_8g071900 96.473 482 17 0 2 483 1 482 0.0 978
MsG0880045458.01.T01 MTR_5g026360 75.153 491 108 5 2 483 1 486 0.0 750
MsG0880045458.01.T01 MTR_8g068840 46.531 490 228 13 15 482 7 484 1.41e-136 403
MsG0880045458.01.T02 MTR_8g071900 96.867 383 12 0 1 383 100 482 0.0 783
MsG0880045458.01.T02 MTR_5g026360 78.718 390 76 2 1 383 97 486 0.0 638
MsG0880045458.01.T02 MTR_8g068840 48.995 398 177 9 1 382 97 484 2.19e-124 368
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045458.01.T01 AT4G19460 64.242 495 162 6 2 483 24 516 0.0 647
MsG0880045458.01.T01 AT1G73160 49.433 441 205 8 50 483 52 481 7.26e-153 444
MsG0880045458.01.T01 AT5G59070 47.379 477 199 12 43 480 38 501 1.86e-137 405
MsG0880045458.01.T02 AT4G19460 66.582 392 122 4 1 383 125 516 0.0 555
MsG0880045458.01.T02 AT1G73160 50.129 389 181 6 1 383 100 481 1.26e-137 401
MsG0880045458.01.T02 AT5G59070 48.900 409 170 9 1 380 103 501 2.34e-125 371

Find 113 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTGGATTTGTTGTTTA+AGG 0.138348 8:-59359339 None:intergenic
CGGATTCACCTTCATGAAAA+TGG 0.183373 8:-59359754 None:intergenic
AGGGAATTTAGAACCAAAAT+TGG 0.197619 8:+59360193 MsG0880045458.01.T01:CDS
TGAAGAGAACAATGAATAAA+AGG 0.207439 8:-59359397 None:intergenic
GCACTCTTCTTGTAGGAATT+TGG 0.215738 8:-59360114 None:intergenic
TGAAGGGGAGTTTGGTTTCT+TGG 0.222371 8:-59359354 None:intergenic
GGAAACCAAGTTCTTGTTCT+AGG 0.232719 8:+59360382 MsG0880045458.01.T01:CDS
TATTTGATTGTTGCTGGTTC+TGG 0.237345 8:+59360331 MsG0880045458.01.T01:CDS
ATTCCTTGGAATCCCAATTT+TGG 0.248514 8:-59360206 None:intergenic
CCTTCATGAAAATGGATAAA+AGG 0.253935 8:-59359746 None:intergenic
TTTGGAGAAGATGCTGATTT+AGG 0.262785 8:+59360169 MsG0880045458.01.T01:CDS
AAGATCACCTGACCAAGTTT+TGG 0.306569 8:-59359492 None:intergenic
GCAACAATCAAATAAACATT+AGG 0.309864 8:-59360322 None:intergenic
TTCTCTAGAAAATGGCCTAT+TGG 0.310215 8:+59359593 MsG0880045458.01.T01:CDS
TCAAGGTTTCCAAGCATTAA+AGG 0.315496 8:+59360535 MsG0880045458.01.T01:CDS
AATGTTTATTTGATTGTTGC+TGG 0.320566 8:+59360325 MsG0880045458.01.T01:CDS
GATGAGTGGGAAGCCTCTTT+TGG 0.327010 8:+59360510 MsG0880045458.01.T01:CDS
TAAAGCATTGGAACAATATC+AGG 0.329940 8:+59359793 MsG0880045458.01.T01:CDS
TTTCAAATCTTGTAGTATCT+TGG 0.333393 8:+59359891 MsG0880045458.01.T01:CDS
TTGTTGAAACCAGGTGAAAT+AGG 0.336844 8:-59359980 None:intergenic
GGGAACAGGTACAAGGATTT+AGG 0.337108 8:+59360361 MsG0880045458.01.T01:CDS
AGGGCTTGATCTTACTTTGA+TGG 0.338305 8:+59360480 MsG0880045458.01.T01:CDS
GGGGTTGATGACGATGAGTT+TGG 0.342718 8:+59360151 MsG0880045458.01.T01:CDS
AGAGTGCATGTGATTGTTAA+TGG 0.352628 8:+59360130 MsG0880045458.01.T01:CDS
CTGCTTCAAGTGCCTCCAAT+AGG 0.361091 8:-59360612 None:intergenic
GATTCCAAGGAATGCAAGTT+TGG 0.363166 8:+59360216 MsG0880045458.01.T01:CDS
AAGCATTAAAGGTACTCTTT+TGG 0.369662 8:+59360546 MsG0880045458.01.T01:CDS
CTTCCCAACAATCCAAAACT+TGG 0.375866 8:+59359480 MsG0880045458.01.T01:CDS
AGTTTGGTACTTGGTGTAGC+AGG 0.397509 8:+59360232 MsG0880045458.01.T01:CDS
TCCTAATGTAGAGTCCCTAT+TGG 0.412693 8:+59360597 MsG0880045458.01.T01:CDS
GAGTGCATGTGATTGTTAAT+GGG 0.413968 8:+59360131 MsG0880045458.01.T01:CDS
GCATGGCGTTCCATGCCACC+TGG 0.416172 8:-59359623 None:intergenic
TGCTTCATGAAGCATATTCA+AGG 0.416760 8:+59360284 MsG0880045458.01.T01:CDS
CCAGGTGAAATAGGTTCATC+AGG 0.418764 8:-59359971 None:intergenic
GGGAATTTAGAACCAAAATT+GGG 0.420147 8:+59360194 MsG0880045458.01.T01:CDS
TTTATTGTATCTCCACTTGT+CGG 0.431325 8:-59359774 None:intergenic
TGTTGCTGGTTCTGGACCAT+GGG 0.432554 8:+59360339 MsG0880045458.01.T01:CDS
AAAAGAGTACCTTTAATGCT+TGG 0.433398 8:-59360544 None:intergenic
CTTATCTCATTCAAAACCTT+AGG 0.435386 8:-59360022 None:intergenic
TCTGAATGAATAACATCAAA+TGG 0.436235 8:-59359833 None:intergenic
CAACAATCAAATAAACATTA+GGG 0.437528 8:-59360321 None:intergenic
CTTACAAGGTGTTATTCCTA+AGG 0.438410 8:+59360006 MsG0880045458.01.T01:CDS
CCACCTGGGGTGGTACCAAT+AGG 0.438791 8:-59359608 None:intergenic
TTGTTGCTGGTTCTGGACCA+TGG 0.439958 8:+59360338 MsG0880045458.01.T01:CDS
ATCACATGCACTCTTCTTGT+AGG 0.440984 8:-59360121 None:intergenic
GGAAACCTTGATGCCAAAAG+AGG 0.456922 8:-59360523 None:intergenic
TGCTTCAAGTGCCTCCAATA+GGG 0.458044 8:-59360611 None:intergenic
AGTACCAAACTTGCATTCCT+TGG 0.458753 8:-59360220 None:intergenic
TCCAATAGGGACTCTACATT+AGG 0.459828 8:-59360598 None:intergenic
GAGAAGATGCTGATTTAGGA+AGG 0.466577 8:+59360173 MsG0880045458.01.T01:CDS
CAACAATCCAAAACTTGGTC+AGG 0.467982 8:+59359485 MsG0880045458.01.T01:CDS
AGGAATGCAAGTTTGGTACT+TGG 0.472357 8:+59360223 MsG0880045458.01.T01:CDS
GAAGAGAACAATGAATAAAA+GGG 0.477676 8:-59359396 None:intergenic
GAACCAAAATTGGGATTCCA+AGG 0.493141 8:+59360203 MsG0880045458.01.T01:CDS
TTACTTTAGCTGAATTTGCA+TGG 0.499438 8:+59359513 MsG0880045458.01.T01:CDS
TTGATCCTAGAACAAGAACT+TGG 0.499984 8:-59360387 None:intergenic
TGGCCTATTGGTACCACCCC+AGG 0.504477 8:+59359605 MsG0880045458.01.T01:CDS
CACTTCCTCATTATGTAGCT+AGG 0.506156 8:+59359864 MsG0880045458.01.T01:CDS
CCTGATGAACCTATTTCACC+TGG 0.516853 8:+59359971 MsG0880045458.01.T01:CDS
TAAAATGCTTTCAACATGGA+AGG 0.518265 8:-59360415 None:intergenic
AGCCCTTGAGGCCTAAGTGT+TGG 0.519619 8:-59360463 None:intergenic
TGCAAATAGAAGTTGTGGTG+GGG 0.527161 8:-59359448 None:intergenic
TTTGGATTGTTGGGAAGCAA+AGG 0.528822 8:-59359474 None:intergenic
TGGTACCACCCCAGGTGGCA+TGG 0.533887 8:+59359613 MsG0880045458.01.T01:CDS
GCGTTCCATGCCACCTGGGG+TGG 0.535238 8:-59359618 None:intergenic
CCTCTCCTTGCTAGCCTCTG+TGG 0.535739 8:-59360649 None:intergenic
GCAAATAGAAGTTGTGGTGG+GGG 0.538698 8:-59359447 None:intergenic
CATGGCGTTCCATGCCACCT+GGG 0.538759 8:-59359622 None:intergenic
GGTTTCAACAATAGCTTACA+AGG 0.542677 8:+59359992 MsG0880045458.01.T01:CDS
CTTGAAGCAGTGGTAAAAGA+TGG 0.544526 8:+59360625 MsG0880045458.01.T01:CDS
ATGGACCACAGAGGCTAGCA+AGG 0.545711 8:+59360644 MsG0880045458.01.T01:CDS
TAATGTAGAGTCCCTATTGG+AGG 0.552827 8:+59360600 MsG0880045458.01.T01:CDS
AATCCAACACTTAGGCCTCA+AGG 0.556259 8:+59360460 MsG0880045458.01.T01:CDS
CAAGGGTAGATACAAAATGT+AGG 0.561364 8:-59360760 None:intergenic
GTGCAAATAGAAGTTGTGGT+GGG 0.562861 8:-59359449 None:intergenic
AGATTCCTAGCTACATAATG+AGG 0.569582 8:-59359869 None:intergenic
ATCCAACACTTAGGCCTCAA+GGG 0.569701 8:+59360461 MsG0880045458.01.T01:CDS
GTGGAGATACAATAAAGCAT+TGG 0.571391 8:+59359781 MsG0880045458.01.T01:CDS
GTTTGGTACTTGGTGTAGCA+GGG 0.576286 8:+59360233 MsG0880045458.01.T01:CDS
CACACTGCTTTAGCTCAAAG+AGG 0.588865 8:+59359656 MsG0880045458.01.T01:CDS
ATAGTTGTGGTGATATGCTA+AGG 0.588981 8:+59360083 MsG0880045458.01.T01:CDS
GAATATGCTTCATGAAGCAA+AGG 0.590704 8:-59360280 None:intergenic
TTGAGCTAAAGCAGTGTGGA+GGG 0.593536 8:-59359651 None:intergenic
GGGAGATTAGTTAAAGACAA+AGG 0.593695 8:+59360253 MsG0880045458.01.T01:CDS
CAGTGTGGAGGGTGTAAGCA+TGG 0.595982 8:-59359640 None:intergenic
GCTTGATCTTACTTTGATGG+AGG 0.601103 8:+59360483 MsG0880045458.01.T01:CDS
ATGGCGTTCCATGCCACCTG+GGG 0.602494 8:-59359621 None:intergenic
AGAAGATGCTGATTTAGGAA+GGG 0.602901 8:+59360174 MsG0880045458.01.T01:CDS
GTTGCTGGTTCTGGACCATG+GGG 0.605877 8:+59360340 MsG0880045458.01.T01:CDS
ATGAAGGTGAATCCGACAAG+TGG 0.608022 8:+59359762 MsG0880045458.01.T01:CDS
AATCTTGTAGTATCTTGGCA+TGG 0.608621 8:+59359896 MsG0880045458.01.T01:CDS
TGTAAGCTATTGTTGAAACC+AGG 0.610612 8:-59359989 None:intergenic
ATTGGAGGCACTTGAAGCAG+TGG 0.613871 8:+59360615 MsG0880045458.01.T01:CDS
TTTGAGCTAAAGCAGTGTGG+AGG 0.615128 8:-59359652 None:intergenic
AGTGCATGTGATTGTTAATG+GGG 0.617598 8:+59360132 MsG0880045458.01.T01:CDS
GGATTGTTGGGAAGCAAAGG+TGG 0.619179 8:-59359471 None:intergenic
TGATGGAGGCTATGATGAGT+GGG 0.626959 8:+59360497 MsG0880045458.01.T01:CDS
CTCTTTGAGCTAAAGCAGTG+TGG 0.626998 8:-59359655 None:intergenic
ACATTGAGGCAGCATACTCA+CGG 0.632335 8:-59360681 None:intergenic
GAGGCTAGCAAGGAGAGGAA+AGG 0.634727 8:+59360654 MsG0880045458.01.T01:CDS
AGATGGCATTAGCATATGAG+AGG 0.637476 8:+59360716 MsG0880045458.01.T01:CDS
GGTGCAAATAGAAGTTGTGG+TGG 0.639655 8:-59359450 None:intergenic
CCACAGAGGCTAGCAAGGAG+AGG 0.642590 8:+59360649 MsG0880045458.01.T01:CDS
TTGATGGAGGCTATGATGAG+TGG 0.649365 8:+59360496 MsG0880045458.01.T01:CDS
ACTTCAATCAAAACTCAACA+AGG 0.658763 8:+59359719 MsG0880045458.01.T01:CDS
ATTATAAAATGCTTTCAACA+TGG 0.659339 8:-59360419 None:intergenic
GTTGCTATTAGTGATAGTTG+TGG 0.667338 8:+59360070 MsG0880045458.01.T01:CDS
CCTATTGGTACCACCCCAGG+TGG 0.674831 8:+59359608 MsG0880045458.01.T01:CDS
AAAGTAAGATCAAGCCCTTG+AGG 0.685959 8:-59360475 None:intergenic
TAGTTGTGGTGATATGCTAA+GGG 0.686145 8:+59360084 MsG0880045458.01.T01:CDS
TTGCTGGTTCTGGACCATGG+GGG 0.693569 8:+59360341 MsG0880045458.01.T01:CDS
GGTGGTGCAAATAGAAGTTG+TGG 0.710566 8:-59359453 None:intergenic
TGGTAAAAGATGGACCACAG+AGG 0.763177 8:+59360635 MsG0880045458.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAGAAATAAAAATTTGAA+GGG - Chr8:59359373-59359392 None:intergenic 15.0%
!! ATTATAAAATGCTTTCAACA+TGG - Chr8:59360422-59360441 None:intergenic 20.0%
!! CAACAATCAAATAAACATTA+GGG - Chr8:59360324-59360343 None:intergenic 20.0%
!! GAAGAAATAAAAATTTGAAG+GGG - Chr8:59359372-59359391 None:intergenic 20.0%
!! GTGAAGAAATAAAAATTTGA+AGG - Chr8:59359374-59359393 None:intergenic 20.0%
! AATGTTTACAGCAAAAAAGA+TGG + Chr8:59360699-59360718 MsG0880045458.01.T01:CDS 25.0%
! AATGTTTATTTGATTGTTGC+TGG + Chr8:59360325-59360344 MsG0880045458.01.T01:CDS 25.0%
! GAAGAGAACAATGAATAAAA+GGG - Chr8:59359399-59359418 None:intergenic 25.0%
! GCAACAATCAAATAAACATT+AGG - Chr8:59360325-59360344 None:intergenic 25.0%
! TCTGAATGAATAACATCAAA+TGG - Chr8:59359836-59359855 None:intergenic 25.0%
! TGAAGAGAACAATGAATAAA+AGG - Chr8:59359400-59359419 None:intergenic 25.0%
! TTTCAAATCTTGTAGTATCT+TGG + Chr8:59359891-59359910 MsG0880045458.01.T01:CDS 25.0%
!! TTTGCAATCAAGTATTTTTC+AGG + Chr8:59359934-59359953 MsG0880045458.01.T01:CDS 25.0%
!!! ATTGAAGTTTTTTCATCTTG+TGG - Chr8:59359707-59359726 None:intergenic 25.0%
!!! TTTCTTGGATTTGTTGTTTA+AGG - Chr8:59359342-59359361 None:intergenic 25.0%
ACTTCAATCAAAACTCAACA+AGG + Chr8:59359719-59359738 MsG0880045458.01.T01:CDS 30.0%
CCTTCATGAAAATGGATAAA+AGG - Chr8:59359749-59359768 None:intergenic 30.0%
CTTATCTCATTCAAAACCTT+AGG - Chr8:59360025-59360044 None:intergenic 30.0%
TAAAAATTTGAAGGGGAGTT+TGG - Chr8:59359365-59359384 None:intergenic 30.0%
TAAAATGCTTTCAACATGGA+AGG - Chr8:59360418-59360437 None:intergenic 30.0%
TTACTTTAGCTGAATTTGCA+TGG + Chr8:59359513-59359532 MsG0880045458.01.T01:CDS 30.0%
TTTATTGTATCTCCACTTGT+CGG - Chr8:59359777-59359796 None:intergenic 30.0%
! AGGGAATTTAGAACCAAAAT+TGG + Chr8:59360193-59360212 MsG0880045458.01.T01:CDS 30.0%
! CCTTTTATCCATTTTCATGA+AGG + Chr8:59359746-59359765 MsG0880045458.01.T01:CDS 30.0%
! GGGAATTTAGAACCAAAATT+GGG + Chr8:59360194-59360213 MsG0880045458.01.T01:CDS 30.0%
! TTTTTGTCAATCCAACACTT+AGG + Chr8:59360452-59360471 MsG0880045458.01.T01:CDS 30.0%
!! AAAAGAGTACCTTTAATGCT+TGG - Chr8:59360547-59360566 None:intergenic 30.0%
!! TAAAGCATTGGAACAATATC+AGG + Chr8:59359793-59359812 MsG0880045458.01.T01:CDS 30.0%
!!! AAGCATTAAAGGTACTCTTT+TGG + Chr8:59360546-59360565 MsG0880045458.01.T01:CDS 30.0%
!!! CTTTTTTGCTGTAAACATTG+AGG - Chr8:59360698-59360717 None:intergenic 30.0%
!!! TTGCTGTTTTCTCTAGAAAA+TGG + Chr8:59359585-59359604 MsG0880045458.01.T01:CDS 30.0%
AATCTTGTAGTATCTTGGCA+TGG + Chr8:59359896-59359915 MsG0880045458.01.T01:CDS 35.0%
AGAGTGCATGTGATTGTTAA+TGG + Chr8:59360130-59360149 MsG0880045458.01.T01:CDS 35.0%
AGATTCCTAGCTACATAATG+AGG - Chr8:59359872-59359891 None:intergenic 35.0%
AGTGCATGTGATTGTTAATG+GGG + Chr8:59360132-59360151 MsG0880045458.01.T01:CDS 35.0%
ATAGTTGTGGTGATATGCTA+AGG + Chr8:59360083-59360102 MsG0880045458.01.T01:CDS 35.0%
CAAGGGTAGATACAAAATGT+AGG - Chr8:59360763-59360782 None:intergenic 35.0%
GAATATGCTTCATGAAGCAA+AGG - Chr8:59360283-59360302 None:intergenic 35.0%
GAGTGCATGTGATTGTTAAT+GGG + Chr8:59360131-59360150 MsG0880045458.01.T01:CDS 35.0%
GGTTTCAACAATAGCTTACA+AGG + Chr8:59359992-59360011 MsG0880045458.01.T01:CDS 35.0%
GTGGAGATACAATAAAGCAT+TGG + Chr8:59359781-59359800 MsG0880045458.01.T01:CDS 35.0%
TAGTTGTGGTGATATGCTAA+GGG + Chr8:59360084-59360103 MsG0880045458.01.T01:CDS 35.0%
TCAAGGTTTCCAAGCATTAA+AGG + Chr8:59360535-59360554 MsG0880045458.01.T01:CDS 35.0%
TGCTTCATGAAGCATATTCA+AGG + Chr8:59360284-59360303 MsG0880045458.01.T01:CDS 35.0%
TGTAAGCTATTGTTGAAACC+AGG - Chr8:59359992-59360011 None:intergenic 35.0%
TTGATCCTAGAACAAGAACT+TGG - Chr8:59360390-59360409 None:intergenic 35.0%
TTGTTGAAACCAGGTGAAAT+AGG - Chr8:59359983-59360002 None:intergenic 35.0%
! ATTCCTTGGAATCCCAATTT+TGG - Chr8:59360209-59360228 None:intergenic 35.0%
! GAGAAAACAGCAATTTTGAG+AGG - Chr8:59359578-59359597 None:intergenic 35.0%
! GGGAGATTAGTTAAAGACAA+AGG + Chr8:59360253-59360272 MsG0880045458.01.T01:CDS 35.0%
! GTTGCTATTAGTGATAGTTG+TGG + Chr8:59360070-59360089 MsG0880045458.01.T01:CDS 35.0%
! TTCTCTAGAAAATGGCCTAT+TGG + Chr8:59359593-59359612 MsG0880045458.01.T01:CDS 35.0%
!! AGAAGATGCTGATTTAGGAA+GGG + Chr8:59360174-59360193 MsG0880045458.01.T01:CDS 35.0%
!! CTTACAAGGTGTTATTCCTA+AGG + Chr8:59360006-59360025 MsG0880045458.01.T01:CDS 35.0%
!! TATTTGATTGTTGCTGGTTC+TGG + Chr8:59360331-59360350 MsG0880045458.01.T01:CDS 35.0%
!! TTTGGAGAAGATGCTGATTT+AGG + Chr8:59360169-59360188 MsG0880045458.01.T01:CDS 35.0%
!!! CTTTTGGTTGATGATGAGTA+TGG + Chr8:59360562-59360581 MsG0880045458.01.T01:CDS 35.0%
!!! TGACCAAGTTTTGGATTGTT+GGG - Chr8:59359486-59359505 None:intergenic 35.0%
AAAGTAAGATCAAGCCCTTG+AGG - Chr8:59360478-59360497 None:intergenic 40.0%
AGATGGCATTAGCATATGAG+AGG + Chr8:59360716-59360735 MsG0880045458.01.T01:CDS 40.0%
AGGAATGCAAGTTTGGTACT+TGG + Chr8:59360223-59360242 MsG0880045458.01.T01:CDS 40.0%
AGGGCTTGATCTTACTTTGA+TGG + Chr8:59360480-59360499 MsG0880045458.01.T01:CDS 40.0%
AGTACCAAACTTGCATTCCT+TGG - Chr8:59360223-59360242 None:intergenic 40.0%
ATCACATGCACTCTTCTTGT+AGG - Chr8:59360124-59360143 None:intergenic 40.0%
CAACAATCCAAAACTTGGTC+AGG + Chr8:59359485-59359504 MsG0880045458.01.T01:CDS 40.0%
CACTTCCTCATTATGTAGCT+AGG + Chr8:59359864-59359883 MsG0880045458.01.T01:CDS 40.0%
CGGATTCACCTTCATGAAAA+TGG - Chr8:59359757-59359776 None:intergenic 40.0%
CTTCCCAACAATCCAAAACT+TGG + Chr8:59359480-59359499 MsG0880045458.01.T01:CDS 40.0%
CTTGAAGCAGTGGTAAAAGA+TGG + Chr8:59360625-59360644 MsG0880045458.01.T01:CDS 40.0%
GAACCAAAATTGGGATTCCA+AGG + Chr8:59360203-59360222 MsG0880045458.01.T01:CDS 40.0%
GATTCCAAGGAATGCAAGTT+TGG + Chr8:59360216-59360235 MsG0880045458.01.T01:CDS 40.0%
GCACTCTTCTTGTAGGAATT+TGG - Chr8:59360117-59360136 None:intergenic 40.0%
GCTTGATCTTACTTTGATGG+AGG + Chr8:59360483-59360502 MsG0880045458.01.T01:CDS 40.0%
GGAAACCAAGTTCTTGTTCT+AGG + Chr8:59360382-59360401 MsG0880045458.01.T01:CDS 40.0%
GTGCAAATAGAAGTTGTGGT+GGG - Chr8:59359452-59359471 None:intergenic 40.0%
TAATGTAGAGTCCCTATTGG+AGG + Chr8:59360600-59360619 MsG0880045458.01.T01:CDS 40.0%
TCCAATAGGGACTCTACATT+AGG - Chr8:59360601-59360620 None:intergenic 40.0%
TCCTAATGTAGAGTCCCTAT+TGG + Chr8:59360597-59360616 MsG0880045458.01.T01:CDS 40.0%
TGCAAATAGAAGTTGTGGTG+GGG - Chr8:59359451-59359470 None:intergenic 40.0%
TTTGGATTGTTGGGAAGCAA+AGG - Chr8:59359477-59359496 None:intergenic 40.0%
! AAGATCACCTGACCAAGTTT+TGG - Chr8:59359495-59359514 None:intergenic 40.0%
!! GAGAAGATGCTGATTTAGGA+AGG + Chr8:59360173-59360192 MsG0880045458.01.T01:CDS 40.0%
!! GCAATTTTGAGAGGTGAAAG+TGG - Chr8:59359569-59359588 None:intergenic 40.0%
!!! CTGACCAAGTTTTGGATTGT+TGG - Chr8:59359487-59359506 None:intergenic 40.0%
AATCCAACACTTAGGCCTCA+AGG + Chr8:59360460-59360479 MsG0880045458.01.T01:CDS 45.0%
ACATTGAGGCAGCATACTCA+CGG - Chr8:59360684-59360703 None:intergenic 45.0%
ATCCAACACTTAGGCCTCAA+GGG + Chr8:59360461-59360480 MsG0880045458.01.T01:CDS 45.0%
ATGAAGGTGAATCCGACAAG+TGG + Chr8:59359762-59359781 MsG0880045458.01.T01:CDS 45.0%
CCAGGTGAAATAGGTTCATC+AGG - Chr8:59359974-59359993 None:intergenic 45.0%
CCTGATGAACCTATTTCACC+TGG + Chr8:59359971-59359990 MsG0880045458.01.T01:CDS 45.0%
CTCTTTGAGCTAAAGCAGTG+TGG - Chr8:59359658-59359677 None:intergenic 45.0%
GCAAATAGAAGTTGTGGTGG+GGG - Chr8:59359450-59359469 None:intergenic 45.0%
GGAAACCTTGATGCCAAAAG+AGG - Chr8:59360526-59360545 None:intergenic 45.0%
GGGAACAGGTACAAGGATTT+AGG + Chr8:59360361-59360380 MsG0880045458.01.T01:CDS 45.0%
GGTGCAAATAGAAGTTGTGG+TGG - Chr8:59359453-59359472 None:intergenic 45.0%
GGTGGTGCAAATAGAAGTTG+TGG - Chr8:59359456-59359475 None:intergenic 45.0%
GTGTGGAGAAGAAAAAGAGC+TGG - Chr8:59359428-59359447 None:intergenic 45.0%
TGATGGAGGCTATGATGAGT+GGG + Chr8:59360497-59360516 MsG0880045458.01.T01:CDS 45.0%
TGCTTCAAGTGCCTCCAATA+GGG - Chr8:59360614-59360633 None:intergenic 45.0%
TGGTAAAAGATGGACCACAG+AGG + Chr8:59360635-59360654 MsG0880045458.01.T01:CDS 45.0%
TTGAGCTAAAGCAGTGTGGA+GGG - Chr8:59359654-59359673 None:intergenic 45.0%
TTGATGGAGGCTATGATGAG+TGG + Chr8:59360496-59360515 MsG0880045458.01.T01:CDS 45.0%
TTTGAGCTAAAGCAGTGTGG+AGG - Chr8:59359655-59359674 None:intergenic 45.0%
! CACACTGCTTTAGCTCAAAG+AGG + Chr8:59359656-59359675 MsG0880045458.01.T01:CDS 45.0%
! TGAAGGGGAGTTTGGTTTCT+TGG - Chr8:59359357-59359376 None:intergenic 45.0%
!! AGTTTGGTACTTGGTGTAGC+AGG + Chr8:59360232-59360251 MsG0880045458.01.T01:CDS 45.0%
!! GTTTGGTACTTGGTGTAGCA+GGG + Chr8:59360233-59360252 MsG0880045458.01.T01:CDS 45.0%
CTGCTTCAAGTGCCTCCAAT+AGG - Chr8:59360615-59360634 None:intergenic 50.0%
GGATTGTTGGGAAGCAAAGG+TGG - Chr8:59359474-59359493 None:intergenic 50.0%
! GATGAGTGGGAAGCCTCTTT+TGG + Chr8:59360510-59360529 MsG0880045458.01.T01:CDS 50.0%
! GGAAGCCTCTTTTGGCATCA+AGG + Chr8:59360518-59360537 MsG0880045458.01.T01:CDS 50.0%
!! ATTGGAGGCACTTGAAGCAG+TGG + Chr8:59360615-59360634 MsG0880045458.01.T01:CDS 50.0%
!! GGGGTTGATGACGATGAGTT+TGG + Chr8:59360151-59360170 MsG0880045458.01.T01:CDS 50.0%
!! TGTTGCTGGTTCTGGACCAT+GGG + Chr8:59360339-59360358 MsG0880045458.01.T01:CDS 50.0%
!! TTGTTGCTGGTTCTGGACCA+TGG + Chr8:59360338-59360357 MsG0880045458.01.T01:CDS 50.0%
ACCATGGGGGAACAGGTACA+AGG + Chr8:59360354-59360373 MsG0880045458.01.T01:CDS 55.0%
AGCCCTTGAGGCCTAAGTGT+TGG - Chr8:59360466-59360485 None:intergenic 55.0%
ATGGACCACAGAGGCTAGCA+AGG + Chr8:59360644-59360663 MsG0880045458.01.T01:CDS 55.0%
GAGGCTAGCAAGGAGAGGAA+AGG + Chr8:59360654-59360673 MsG0880045458.01.T01:CDS 55.0%
TCCTTGTACCTGTTCCCCCA+TGG - Chr8:59360358-59360377 None:intergenic 55.0%
! CAGTGTGGAGGGTGTAAGCA+TGG - Chr8:59359643-59359662 None:intergenic 55.0%
! TAGAAGTTGTGGTGGGGGTG+TGG - Chr8:59359445-59359464 None:intergenic 55.0%
!! GTTGCTGGTTCTGGACCATG+GGG + Chr8:59360340-59360359 MsG0880045458.01.T01:CDS 55.0%
!! TTGCTGGTTCTGGACCATGG+GGG + Chr8:59360341-59360360 MsG0880045458.01.T01:CDS 55.0%
ATGGCGTTCCATGCCACCTG+GGG - Chr8:59359624-59359643 None:intergenic 60.0%
CATGGCGTTCCATGCCACCT+GGG - Chr8:59359625-59359644 None:intergenic 60.0%
CCACAGAGGCTAGCAAGGAG+AGG + Chr8:59360649-59360668 MsG0880045458.01.T01:CDS 60.0%
CCACCTGGGGTGGTACCAAT+AGG - Chr8:59359611-59359630 None:intergenic 60.0%
CCTATTGGTACCACCCCAGG+TGG + Chr8:59359608-59359627 MsG0880045458.01.T01:CDS 60.0%
TGGCCTATTGGTACCACCCC+AGG + Chr8:59359605-59359624 MsG0880045458.01.T01:CDS 60.0%
! CCTCTCCTTGCTAGCCTCTG+TGG - Chr8:59360652-59360671 None:intergenic 60.0%
! GTTCTGGACCATGGGGGAAC+AGG + Chr8:59360347-59360366 MsG0880045458.01.T01:CDS 60.0%
GCATGGCGTTCCATGCCACC+TGG - Chr8:59359626-59359645 None:intergenic 65.0%
TGGTACCACCCCAGGTGGCA+TGG + Chr8:59359613-59359632 MsG0880045458.01.T01:CDS 65.0%
GCGTTCCATGCCACCTGGGG+TGG - Chr8:59359621-59359640 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 59359332 59360783 59359332 ID=MsG0880045458.01;Name=MsG0880045458.01
Chr8 mRNA 59359332 59360783 59359332 ID=MsG0880045458.01.T01;Parent=MsG0880045458.01;Name=MsG0880045458.01.T01;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|483
Chr8 exon 59359332 59360783 59359332 ID=MsG0880045458.01.T01:exon:22841;Parent=MsG0880045458.01.T01
Chr8 CDS 59359332 59360783 59359332 ID=MsG0880045458.01.T01:cds;Parent=MsG0880045458.01.T01
Chr8 mRNA 59359632 59360783 59359632 ID=MsG0880045458.01.T02;Parent=MsG0880045458.01;Name=MsG0880045458.01.T02;_AED=0.11;_eAED=0.11;_QI=0|-1|0|1|-1|0|1|0|383
Chr8 exon 59359632 59360783 59359632 ID=MsG0880045458.01.T02:exon:22842;Parent=MsG0880045458.01.T02
Chr8 CDS 59359632 59360783 59359632 ID=MsG0880045458.01.T02:cds;Parent=MsG0880045458.01.T02
Gene Sequence

>MsG0880045458.01.T01

ATGATGGCCTTAAACAACAAATCCAAGAAACCAAACTCCCCTTCAAATTTTTATTTCTTCACAACCCTTTTATTCATTGTTCTCTTCACAATACCAGCTCTTTTTCTTCTCCACACCCCCACCACAACTTCTATTTGCACCACCTTTGCTTCCCAACAATCCAAAACTTGGTCAGGTGATCTTACTTTAGCTGAATTTGCATGGAACAAGCTCTCATTTTCTCAACGCAAAAAACCACTTTCACCTCTCAAAATTGCTGTTTTCTCTAGAAAATGGCCTATTGGTACCACCCCAGGTGGCATGGAACGCCATGCTTACACCCTCCACACTGCTTTAGCTCAAAGAGGACATAAAGTTCATATTTTTACATCACCACAAGATGAAAAAACTTCAATCAAAACTCAACAAGGTTATCCTTTTATCCATTTTCATGAAGGTGAATCCGACAAGTGGAGATACAATAAAGCATTGGAACAATATCAGGAAGAGAACAAGAAAGAACCATTTGATGTTATTCATTCAGAAAGTGTTGCACTTCCTCATTATGTAGCTAGGAATCTTTCAAATCTTGTAGTATCTTGGCATGGAATAGCACTTGAGAGTTTGCAATCAAGTATTTTTCAGGATTTAGCTAGAAGACCTGATGAACCTATTTCACCTGGTTTCAACAATAGCTTACAAGGTGTTATTCCTAAGGTTTTGAATGAGATAAGATTCTTTAAGAGTTATGCTCATCATGTTGCTATTAGTGATAGTTGTGGTGATATGCTAAGGGATTTCTACCAAATTCCTACAAGAAGAGTGCATGTGATTGTTAATGGGGTTGATGACGATGAGTTTGGAGAAGATGCTGATTTAGGAAGGGAATTTAGAACCAAAATTGGGATTCCAAGGAATGCAAGTTTGGTACTTGGTGTAGCAGGGAGATTAGTTAAAGACAAAGGTCATCCTTTGCTTCATGAAGCATATTCAAGGCTAATAACAAAACACCCTAATGTTTATTTGATTGTTGCTGGTTCTGGACCATGGGGGAACAGGTACAAGGATTTAGGAAACCAAGTTCTTGTTCTAGGATCAATGAGTCCTTCCATGTTGAAAGCATTTTATAATGCTATTGACATTTTTGTCAATCCAACACTTAGGCCTCAAGGGCTTGATCTTACTTTGATGGAGGCTATGATGAGTGGGAAGCCTCTTTTGGCATCAAGGTTTCCAAGCATTAAAGGTACTCTTTTGGTTGATGATGAGTATGGTTACATGTTCTCTCCTAATGTAGAGTCCCTATTGGAGGCACTTGAAGCAGTGGTAAAAGATGGACCACAGAGGCTAGCAAGGAGAGGAAAGGCTTGCCGTGAGTATGCTGCCTCAATGTTTACAGCAAAAAAGATGGCATTAGCATATGAGAGGTTATTTCTATGTATAAAAGATCCTACATTTTGTATCTACCCTTGA

>MsG0880045458.01.T02

ATGGAACGCCATGCTTACACCCTCCACACTGCTTTAGCTCAAAGAGGACATAAAGTTCATATTTTTACATCACCACAAGATGAAAAAACTTCAATCAAAACTCAACAAGGTTATCCTTTTATCCATTTTCATGAAGGTGAATCCGACAAGTGGAGATACAATAAAGCATTGGAACAATATCAGGAAGAGAACAAGAAAGAACCATTTGATGTTATTCATTCAGAAAGTGTTGCACTTCCTCATTATGTAGCTAGGAATCTTTCAAATCTTGTAGTATCTTGGCATGGAATAGCACTTGAGAGTTTGCAATCAAGTATTTTTCAGGATTTAGCTAGAAGACCTGATGAACCTATTTCACCTGGTTTCAACAATAGCTTACAAGGTGTTATTCCTAAGGTTTTGAATGAGATAAGATTCTTTAAGAGTTATGCTCATCATGTTGCTATTAGTGATAGTTGTGGTGATATGCTAAGGGATTTCTACCAAATTCCTACAAGAAGAGTGCATGTGATTGTTAATGGGGTTGATGACGATGAGTTTGGAGAAGATGCTGATTTAGGAAGGGAATTTAGAACCAAAATTGGGATTCCAAGGAATGCAAGTTTGGTACTTGGTGTAGCAGGGAGATTAGTTAAAGACAAAGGTCATCCTTTGCTTCATGAAGCATATTCAAGGCTAATAACAAAACACCCTAATGTTTATTTGATTGTTGCTGGTTCTGGACCATGGGGGAACAGGTACAAGGATTTAGGAAACCAAGTTCTTGTTCTAGGATCAATGAGTCCTTCCATGTTGAAAGCATTTTATAATGCTATTGACATTTTTGTCAATCCAACACTTAGGCCTCAAGGGCTTGATCTTACTTTGATGGAGGCTATGATGAGTGGGAAGCCTCTTTTGGCATCAAGGTTTCCAAGCATTAAAGGTACTCTTTTGGTTGATGATGAGTATGGTTACATGTTCTCTCCTAATGTAGAGTCCCTATTGGAGGCACTTGAAGCAGTGGTAAAAGATGGACCACAGAGGCTAGCAAGGAGAGGAAAGGCTTGCCGTGAGTATGCTGCCTCAATGTTTACAGCAAAAAAGATGGCATTAGCATATGAGAGGTTATTTCTATGTATAAAAGATCCTACATTTTGTATCTACCCTTGA

Protein sequence

>MsG0880045458.01.T01

MMALNNKSKKPNSPSNFYFFTTLLFIVLFTIPALFLLHTPTTTSICTTFASQQSKTWSGDLTLAEFAWNKLSFSQRKKPLSPLKIAVFSRKWPIGTTPGGMERHAYTLHTALAQRGHKVHIFTSPQDEKTSIKTQQGYPFIHFHEGESDKWRYNKALEQYQEENKKEPFDVIHSESVALPHYVARNLSNLVVSWHGIALESLQSSIFQDLARRPDEPISPGFNNSLQGVIPKVLNEIRFFKSYAHHVAISDSCGDMLRDFYQIPTRRVHVIVNGVDDDEFGEDADLGREFRTKIGIPRNASLVLGVAGRLVKDKGHPLLHEAYSRLITKHPNVYLIVAGSGPWGNRYKDLGNQVLVLGSMSPSMLKAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPLLASRFPSIKGTLLVDDEYGYMFSPNVESLLEALEAVVKDGPQRLARRGKACREYAASMFTAKKMALAYERLFLCIKDPTFCIYP*

>MsG0880045458.01.T02

MERHAYTLHTALAQRGHKVHIFTSPQDEKTSIKTQQGYPFIHFHEGESDKWRYNKALEQYQEENKKEPFDVIHSESVALPHYVARNLSNLVVSWHGIALESLQSSIFQDLARRPDEPISPGFNNSLQGVIPKVLNEIRFFKSYAHHVAISDSCGDMLRDFYQIPTRRVHVIVNGVDDDEFGEDADLGREFRTKIGIPRNASLVLGVAGRLVKDKGHPLLHEAYSRLITKHPNVYLIVAGSGPWGNRYKDLGNQVLVLGSMSPSMLKAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPLLASRFPSIKGTLLVDDEYGYMFSPNVESLLEALEAVVKDGPQRLARRGKACREYAASMFTAKKMALAYERLFLCIKDPTFCIYP*