AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025480.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025480.01.T01 MTR_5g029550 96.542 347 4 2 1 344 1 342 0.0 673
MsG0580025480.01.T01 MTR_5g029550 95.848 289 4 2 1 286 1 284 0.0 556
MsG0580025480.01.T01 MTR_5g029550 96.371 248 4 1 1 248 1 243 3.14e-173 481
MsG0580025480.01.T01 MTR_1g009450 73.016 126 11 2 221 343 10 115 1.58e-53 172
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025480.01.T01 AT2G35500 60.991 323 112 5 25 344 41 352 5.06e-129 375

Find 76 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGCTCTTCAGCCACTTTC+TGG 0.132886 5:-19446934 None:intergenic
GAACGAAGTGAGTTGAAATT+TGG 0.220360 5:-19446094 None:intergenic
TCGTAAGTTGTGGTGGAAAC+AGG 0.339571 5:-19446190 None:intergenic
TGAAGAGCTTGCTACTGGTC+TGG 0.344091 5:+19446946 MsG0580025480.01.T01:CDS
GAAGAGCTTGCTACTGGTCT+GGG 0.347927 5:+19446947 MsG0580025480.01.T01:CDS
CTGGAAGTTTCTTGTCTGAT+AGG 0.354609 5:-19449030 None:intergenic
TTCTATCTATATTGGTGAAA+TGG 0.362092 5:+19445982 None:intergenic
GGCAGTGAAGGAGCATTTGC+AGG 0.372222 5:-19446167 None:intergenic
CTGCTGGAAGATCTGATAAA+TGG 0.382309 5:+19448297 MsG0580025480.01.T01:CDS
ACATGAATCCACGGTTTGAT+TGG 0.384554 5:-19447180 None:intergenic
AAGTACAGTGCCTTCGCCTT+CGG 0.393292 5:-19448124 None:intergenic
TCATGGGAATCGCTCGCTGC+TGG 0.401946 5:+19446851 MsG0580025480.01.T01:CDS
CTATCAGACAAGAAACTTCC+AGG 0.403673 5:+19449031 MsG0580025480.01.T01:CDS
AAAATGATCCTGAGTTGAAA+TGG 0.404730 5:+19446813 MsG0580025480.01.T01:CDS
TTAAACCCTCGGAAACAATA+TGG 0.406570 5:+19446661 MsG0580025480.01.T01:CDS
TTTATGCAGGATTTACTGTC+TGG 0.408090 5:+19448327 MsG0580025480.01.T01:CDS
ATTGAGAAAATAACGATGAA+TGG 0.409404 5:-19446123 None:intergenic
AGGGCAGCAGTTGCAACATT+AGG 0.414670 5:+19448260 MsG0580025480.01.T01:intron
ATGGAGTTAAGATTAAATAT+AGG 0.430953 5:+19446513 MsG0580025480.01.T01:CDS
TCACCACTCCCGCTGCTCTC+AGG 0.440859 5:+19446014 MsG0580025480.01.T01:CDS
GGAGGTAAACATGGTGCTGC+TGG 0.447752 5:+19448281 MsG0580025480.01.T01:CDS
TTGAGAAAATAACGATGAAT+GGG 0.450204 5:-19446122 None:intergenic
GGCCTGACATCATGGAATCA+TGG 0.458410 5:+19446834 MsG0580025480.01.T01:CDS
GGAACATCAATCTATCTTGT+TGG 0.459106 5:+19446893 MsG0580025480.01.T01:CDS
AGATGTGGTTGTGAAATTAC+AGG 0.459192 5:+19448943 MsG0580025480.01.T01:CDS
GGAAGAAACCTGAGAGCAGC+GGG 0.467446 5:-19446022 None:intergenic
ATTAGTGTCTATCAACGTAA+TGG 0.470764 5:-19446622 None:intergenic
TTAGTGTCTATCAACGTAAT+GGG 0.472184 5:-19446621 None:intergenic
TCCCATGATTCCATGATGTC+AGG 0.474648 5:-19446836 None:intergenic
ACTATCAGAGTGTTGCAGTC+AGG 0.477120 5:+19446594 MsG0580025480.01.T01:CDS
GAGCATTTGCAGGGAGAAAG+AGG 0.479003 5:-19446157 None:intergenic
CACTTTCTGGTTGATTTCAG+TGG 0.492804 5:-19446921 None:intergenic
TTTCTGGTTGTGGGATTTGG+AGG 0.494317 5:-19446043 None:intergenic
AAATGGCGACATCTTTATGC+AGG 0.496184 5:+19448314 MsG0580025480.01.T01:CDS
TTATGCTAAAAGTGTGGCAC+AGG 0.496935 5:+19448979 MsG0580025480.01.T01:CDS
AAACCTGAGAGCAGCGGGAG+TGG 0.498023 5:-19446017 None:intergenic
TTCTGATAATGCTTCAGAGA+TGG 0.507023 5:+19446494 MsG0580025480.01.T01:CDS
AAGAAGCACAAAAGACATAT+CGG 0.507065 5:+19446548 MsG0580025480.01.T01:CDS
ATTCCAGGGCTGCTTGCTGA+AGG 0.508946 5:+19448087 MsG0580025480.01.T01:intron
GCCTGACATCATGGAATCAT+GGG 0.510245 5:+19446835 MsG0580025480.01.T01:CDS
AATAAATCAGCACAAGTACC+TGG 0.513832 5:-19449049 None:intergenic
GTGGCTGAAGAGCTTGCTAC+TGG 0.517891 5:+19446941 MsG0580025480.01.T01:CDS
TTGTCACAGACTGAAGCATC+AGG 0.519376 5:+19448350 MsG0580025480.01.T01:CDS
CGTAAGTTGTGGTGGAAACA+GGG 0.526645 5:-19446189 None:intergenic
CACTGAAATCAACCAGAAAG+TGG 0.526884 5:+19446922 MsG0580025480.01.T01:CDS
AGGAAGAAACCTGAGAGCAG+CGG 0.533503 5:-19446023 None:intergenic
CACGAACCATATTGTTTCCG+AGG 0.550743 5:-19446667 None:intergenic
GGTGGAAACAGGGGCAGTGA+AGG 0.554825 5:-19446179 None:intergenic
GTTGAAATGGCCTGACATCA+TGG 0.556044 5:+19446826 MsG0580025480.01.T01:CDS
AAGATTAAATATAGGAAACA+TGG 0.562321 5:+19446521 MsG0580025480.01.T01:CDS
GCAGCAGTTGCAACATTAGG+AGG 0.571731 5:+19448263 MsG0580025480.01.T01:CDS
ATGTCAGGCCATTTCAACTC+AGG 0.577136 5:-19446821 None:intergenic
AAGTACCTCGTAAGTTGTGG+TGG 0.588574 5:-19446197 None:intergenic
CTGTACTTGAAAGCATAAGT+AGG 0.593080 5:+19448139 MsG0580025480.01.T01:CDS
AGATGAAGATTCAGCAAGGG+AGG 0.603993 5:+19448874 MsG0580025480.01.T01:intron
AAGAGCTTGCTACTGGTCTG+GGG 0.608924 5:+19446948 MsG0580025480.01.T01:CDS
AGTAAGTACCTCGTAAGTTG+TGG 0.609430 5:-19446200 None:intergenic
GACTCAGTAGCCGAAGGCGA+AGG 0.609903 5:+19448114 MsG0580025480.01.T01:CDS
GCAGTGAAGGAGCATTTGCA+GGG 0.610757 5:-19446166 None:intergenic
GGTTGTGAAATTACAGGGAT+GGG 0.612080 5:+19448949 MsG0580025480.01.T01:CDS
TGTTTCCACCACAACTTACG+AGG 0.616074 5:+19446192 MsG0580025480.01.T01:CDS
AGCATTTGCAGGGAGAAAGA+GGG 0.616324 5:-19446156 None:intergenic
AACTTATTCCAATCAAACCG+TGG 0.626048 5:+19447172 MsG0580025480.01.T01:CDS
ACGAACCATATTGTTTCCGA+GGG 0.626501 5:-19446666 None:intergenic
TACAGATGAAGATTCAGCAA+GGG 0.627827 5:+19448871 MsG0580025480.01.T01:intron
ATGACACTTACATGAATCCA+CGG 0.632412 5:-19447189 None:intergenic
TGGTTGTGAAATTACAGGGA+TGG 0.647286 5:+19448948 MsG0580025480.01.T01:CDS
GGTTCTGACTCAGTAGCCGA+AGG 0.651113 5:+19448108 MsG0580025480.01.T01:CDS
TCCTGCTTATGCTAAAAGTG+TGG 0.654346 5:+19448973 MsG0580025480.01.T01:CDS
TGCATATACGAATGCAGATG+TGG 0.657277 5:+19448928 MsG0580025480.01.T01:CDS
TATAGATGATGATCATCTTG+TGG 0.662960 5:+19446778 MsG0580025480.01.T01:CDS
ATACAGATGAAGATTCAGCA+AGG 0.667293 5:+19448870 MsG0580025480.01.T01:intron
GTAAGTTGTGGTGGAAACAG+GGG 0.682098 5:-19446188 None:intergenic
GCAACATTAGGAGGTAAACA+TGG 0.688881 5:+19448272 MsG0580025480.01.T01:CDS
GATGTGGTTGTGAAATTACA+GGG 0.701042 5:+19448944 MsG0580025480.01.T01:CDS
TATGCTAAAAGTGTGGCACA+GGG 0.729528 5:+19448980 MsG0580025480.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATAGAAAAAGAAAT+TGG - Chr5:19446394-19446413 None:intergenic 10.0%
!!! ATTTTAGTTGATATATTATT+TGG + Chr5:19448375-19448394 MsG0580025480.01.T01:intron 10.0%
!! GCAAATATATATCAAAATAT+TGG - Chr5:19447790-19447809 None:intergenic 15.0%
!!! AATTTCTTCATTTAATTTTC+TGG + Chr5:19448168-19448187 MsG0580025480.01.T01:intron 15.0%
!!! ATTTTAAACTACGTTAAAAA+TGG + Chr5:19446692-19446711 MsG0580025480.01.T01:intron 15.0%
!!! CTTTTTATAATTTGATCTTT+TGG + Chr5:19446416-19446435 MsG0580025480.01.T01:intron 15.0%
!! AAATGATTCAAGAAAAATGA+TGG - Chr5:19447661-19447680 None:intergenic 20.0%
!! AAGATTAAATATAGGAAACA+TGG + Chr5:19446521-19446540 MsG0580025480.01.T01:CDS 20.0%
!! ATGGAGTTAAGATTAAATAT+AGG + Chr5:19446513-19446532 MsG0580025480.01.T01:CDS 20.0%
!! TAATATTACAATAGAACTCT+AGG + Chr5:19447347-19447366 MsG0580025480.01.T01:intron 20.0%
!!! ATTGAGAAATCAAACATTTT+TGG + Chr5:19446257-19446276 MsG0580025480.01.T01:intron 20.0%
!!! TTGTTGGAAATTTTTCAAAA+CGG + Chr5:19448577-19448596 MsG0580025480.01.T01:intron 20.0%
!!! TTTTGAAAAATTTCCAACAA+AGG - Chr5:19448577-19448596 None:intergenic 20.0%
! AACAAATGTAATCATATTCC+AGG + Chr5:19448072-19448091 MsG0580025480.01.T01:intron 25.0%
! ACAAATGTAATCATATTCCA+GGG + Chr5:19448073-19448092 MsG0580025480.01.T01:intron 25.0%
! AGCAAAGATATGTTACAAAT+TGG + Chr5:19447580-19447599 MsG0580025480.01.T01:intron 25.0%
! ATATAGGATTTAAGTGACTA+AGG - Chr5:19448039-19448058 None:intergenic 25.0%
! ATTGAGAAAATAACGATGAA+TGG - Chr5:19446126-19446145 None:intergenic 25.0%
! ATTTGTACATTACAAACAGT+AGG - Chr5:19446239-19446258 None:intergenic 25.0%
! CAAAGATATGTTACAAATTG+GGG + Chr5:19447582-19447601 MsG0580025480.01.T01:intron 25.0%
! GATTATCCATATGCTAAAAT+AGG - Chr5:19447492-19447511 None:intergenic 25.0%
! GCAAAGATATGTTACAAATT+GGG + Chr5:19447581-19447600 MsG0580025480.01.T01:intron 25.0%
! GTTAATACACTGCAATATAT+AGG - Chr5:19448055-19448074 None:intergenic 25.0%
! TTGAGAAAATAACGATGAAT+GGG - Chr5:19446125-19446144 None:intergenic 25.0%
! TTTGATATATATTTGCGAGT+TGG + Chr5:19447794-19447813 MsG0580025480.01.T01:intron 25.0%
!! ATCAGTTTGACTCTAATTTT+AGG + Chr5:19447420-19447439 MsG0580025480.01.T01:intron 25.0%
!! ATTAATATCCCTGACATTTT+TGG - Chr5:19447837-19447856 None:intergenic 25.0%
!! TGAGTTTGATTTATAACTGA+TGG + Chr5:19446443-19446462 MsG0580025480.01.T01:intron 25.0%
!! TGATAGGATTAACTGTTTTA+GGG - Chr5:19449017-19449036 None:intergenic 25.0%
!!! TATTATTTGGCTGTTTTTAC+AGG + Chr5:19448388-19448407 MsG0580025480.01.T01:intron 25.0%
!!! TTGACTCTAATTTTAGGTAA+AGG + Chr5:19447426-19447445 MsG0580025480.01.T01:intron 25.0%
!!! TTTTTTCTTTCAGATGTCTT+GGG + Chr5:19447224-19447243 MsG0580025480.01.T01:intron 25.0%
AAGTGAGAAAACTAAACAAG+GGG + Chr5:19448621-19448640 MsG0580025480.01.T01:intron 30.0%
AGAAGTGAGAAAACTAAACA+AGG + Chr5:19448619-19448638 MsG0580025480.01.T01:intron 30.0%
ATGAAATTTCTTCGAGTCAA+GGG - Chr5:19448485-19448504 None:intergenic 30.0%
ATGATTGAATCAACCTTTGT+TGG + Chr5:19448561-19448580 MsG0580025480.01.T01:intron 30.0%
ATTAGTGTCTATCAACGTAA+TGG - Chr5:19446625-19446644 None:intergenic 30.0%
CTAGTAAGAGACATTACTAT+AGG - Chr5:19447389-19447408 None:intergenic 30.0%
GAAGTGAGAAAACTAAACAA+GGG + Chr5:19448620-19448639 MsG0580025480.01.T01:intron 30.0%
GACATCTGAAAGAAAAAACA+AGG - Chr5:19447222-19447241 None:intergenic 30.0%
GCATCTTGTATTAGTATAAG+AGG + Chr5:19447981-19448000 MsG0580025480.01.T01:intron 30.0%
TATAGATGATGATCATCTTG+TGG + Chr5:19446778-19446797 MsG0580025480.01.T01:CDS 30.0%
TATGCTAAAATAGGCAGAAT+TGG - Chr5:19447483-19447502 None:intergenic 30.0%
TCATTACAAAGATTGTGTGT+TGG + Chr5:19448504-19448523 MsG0580025480.01.T01:intron 30.0%
TGTATTAGTATAAGAGGACA+TGG + Chr5:19447987-19448006 MsG0580025480.01.T01:intron 30.0%
TTACTCGAAAGATATTAGCA+TGG + Chr5:19447954-19447973 MsG0580025480.01.T01:intron 30.0%
TTAGTGTCTATCAACGTAAT+GGG - Chr5:19446624-19446643 None:intergenic 30.0%
TTTAATGTTCATCTCTTCTC+AGG + Chr5:19447117-19447136 MsG0580025480.01.T01:intron 30.0%
! AAAATGATCCTGAGTTGAAA+TGG + Chr5:19446813-19446832 MsG0580025480.01.T01:CDS 30.0%
! AACAAAGGTTGATTCAATCA+TGG - Chr5:19448562-19448581 None:intergenic 30.0%
! AAGAAGCACAAAAGACATAT+CGG + Chr5:19446548-19446567 MsG0580025480.01.T01:CDS 30.0%
! ATGCTAATATCTTTCGAGTA+AGG - Chr5:19447955-19447974 None:intergenic 30.0%
! ATTTTCACTATTCACAATGC+TGG + Chr5:19446988-19447007 MsG0580025480.01.T01:intron 30.0%
! CTGATAGGATTAACTGTTTT+AGG - Chr5:19449018-19449037 None:intergenic 30.0%
! GAAGAAGTTGAATGTTTTTC+TGG - Chr5:19446062-19446081 None:intergenic 30.0%
! GGAATTTTGAACCGTATTTT+GGG + Chr5:19446713-19446732 MsG0580025480.01.T01:intron 30.0%
! TGCTAATATCTTTCGAGTAA+GGG - Chr5:19447954-19447973 None:intergenic 30.0%
! TGGAATTTTGAACCGTATTT+TGG + Chr5:19446712-19446731 MsG0580025480.01.T01:intron 30.0%
!! AATAGCTCTAAGATAAACCT+CGG - Chr5:19447890-19447909 None:intergenic 30.0%
!! GAAATTTTTCAAAACGGTGT+GGG + Chr5:19448583-19448602 MsG0580025480.01.T01:intron 30.0%
!! TGTTTTCAAGGTTCAAAACA+AGG - Chr5:19448445-19448464 None:intergenic 30.0%
!! TTTTTGGCAAAGTTCACTTA+AGG - Chr5:19447821-19447840 None:intergenic 30.0%
!!! ATTCTGCCTATTTTAGCATA+TGG + Chr5:19447483-19447502 MsG0580025480.01.T01:intron 30.0%
!!! GTTTTTTCTTTCAGATGTCT+TGG + Chr5:19447223-19447242 MsG0580025480.01.T01:intron 30.0%
!!! TTGAATGTTTTTCTGGTTGT+GGG - Chr5:19446055-19446074 None:intergenic 30.0%
AAAAGCCATGAATTGCATCA+AGG - Chr5:19447635-19447654 None:intergenic 35.0%
AAACAATGTCACGAGTGTTT+AGG - Chr5:19448676-19448695 None:intergenic 35.0%
AACTTATTCCAATCAAACCG+TGG + Chr5:19447172-19447191 MsG0580025480.01.T01:CDS 35.0%
AATAAATCAGCACAAGTACC+TGG - Chr5:19449052-19449071 None:intergenic 35.0%
AATGTTGCTAAGTGTGTGTT+TGG + Chr5:19446295-19446314 MsG0580025480.01.T01:intron 35.0%
ACAAAGATTGTGTGTTGGAT+GGG + Chr5:19448509-19448528 MsG0580025480.01.T01:intron 35.0%
AGATGTGGTTGTGAAATTAC+AGG + Chr5:19448943-19448962 MsG0580025480.01.T01:CDS 35.0%
AGTCGAAGTAACACACATAA+CGG - Chr5:19447560-19447579 None:intergenic 35.0%
ATACAGATGAAGATTCAGCA+AGG + Chr5:19448870-19448889 MsG0580025480.01.T01:intron 35.0%
ATGACACTTACATGAATCCA+CGG - Chr5:19447192-19447211 None:intergenic 35.0%
GAACTTTGCCAAAAATGTCA+GGG + Chr5:19447826-19447845 MsG0580025480.01.T01:intron 35.0%
GATGAAATTTCTTCGAGTCA+AGG - Chr5:19448486-19448505 None:intergenic 35.0%
GATGTGGTTGTGAAATTACA+GGG + Chr5:19448944-19448963 MsG0580025480.01.T01:CDS 35.0%
GGAACATCAATCTATCTTGT+TGG + Chr5:19446893-19446912 MsG0580025480.01.T01:CDS 35.0%
GGTTTAATCCTGTCAAAAAG+AGG - Chr5:19446648-19446667 None:intergenic 35.0%
TACAAAGATTGTGTGTTGGA+TGG + Chr5:19448508-19448527 MsG0580025480.01.T01:intron 35.0%
TACAGATGAAGATTCAGCAA+GGG + Chr5:19448871-19448890 MsG0580025480.01.T01:intron 35.0%
TATGGATAATCAGTGTCACA+TGG + Chr5:19447501-19447520 MsG0580025480.01.T01:intron 35.0%
TCAAAACAAGGTTGGACTAT+TGG - Chr5:19448433-19448452 None:intergenic 35.0%
TGAACTTTGCCAAAAATGTC+AGG + Chr5:19447825-19447844 MsG0580025480.01.T01:intron 35.0%
TTAAACCCTCGGAAACAATA+TGG + Chr5:19446661-19446680 MsG0580025480.01.T01:CDS 35.0%
TTCAAGGTTCAAAACAAGGT+TGG - Chr5:19448441-19448460 None:intergenic 35.0%
TTTATGCAGGATTTACTGTC+TGG + Chr5:19448327-19448346 MsG0580025480.01.T01:CDS 35.0%
! ACACTAATCCTCTTTTTGAC+AGG + Chr5:19446637-19446656 MsG0580025480.01.T01:CDS 35.0%
! AGCAACTCTTTTGTACTTAG+TGG - Chr5:19447149-19447168 None:intergenic 35.0%
! CTGTACTTGAAAGCATAAGT+AGG + Chr5:19448139-19448158 MsG0580025480.01.T01:CDS 35.0%
! GAACGAAGTGAGTTGAAATT+TGG - Chr5:19446097-19446116 None:intergenic 35.0%
! GCTAATATCTTTCGAGTAAG+GGG - Chr5:19447953-19447972 None:intergenic 35.0%
! TTCTGATAATGCTTCAGAGA+TGG + Chr5:19446494-19446513 MsG0580025480.01.T01:CDS 35.0%
! TTCTGGATACTTTTGTTGCT+AGG + Chr5:19448185-19448204 MsG0580025480.01.T01:intron 35.0%
! TTTTGACAGGATTAAACCCT+CGG + Chr5:19446650-19446669 MsG0580025480.01.T01:CDS 35.0%
!! AGGACGATGAAAATTGGTTT+TGG + Chr5:19446322-19446341 MsG0580025480.01.T01:intron 35.0%
!! ATAGCTCTAAGATAAACCTC+GGG - Chr5:19447889-19447908 None:intergenic 35.0%
!! GGAAATTTTTCAAAACGGTG+TGG + Chr5:19448582-19448601 MsG0580025480.01.T01:intron 35.0%
!! TGGTTGAATGGTTCTGATTT+GGG + Chr5:19446749-19446768 MsG0580025480.01.T01:intron 35.0%
!!! GTTGAATGTTTTTCTGGTTG+TGG - Chr5:19446056-19446075 None:intergenic 35.0%
!!! TCTGTTTGTGAGTTGGTTTT+TGG + Chr5:19447745-19447764 MsG0580025480.01.T01:intron 35.0%
!!! TGACTCATCTCTTGTTTTCA+AGG - Chr5:19448457-19448476 None:intergenic 35.0%
!!! TTTGTGAGTTGGTTTTTGGA+GGG + Chr5:19447749-19447768 MsG0580025480.01.T01:intron 35.0%
AAAGATTGTGTGTTGGATGG+GGG + Chr5:19448511-19448530 MsG0580025480.01.T01:intron 40.0%
AAATGGCGACATCTTTATGC+AGG + Chr5:19448314-19448333 MsG0580025480.01.T01:CDS 40.0%
AACTCACAAACAGACCCTTA+AGG - Chr5:19447739-19447758 None:intergenic 40.0%
AATGCTGGTAAGTGGTAACT+AGG + Chr5:19447003-19447022 MsG0580025480.01.T01:intron 40.0%
ACATGAATCCACGGTTTGAT+TGG - Chr5:19447183-19447202 None:intergenic 40.0%
ACGAACCATATTGTTTCCGA+GGG - Chr5:19446669-19446688 None:intergenic 40.0%
AGTAAGTACCTCGTAAGTTG+TGG - Chr5:19446203-19446222 None:intergenic 40.0%
ATGAATTGCATCAAGGACAG+AGG - Chr5:19447628-19447647 None:intergenic 40.0%
CAAAGATTGTGTGTTGGATG+GGG + Chr5:19448510-19448529 MsG0580025480.01.T01:intron 40.0%
CACTGAAATCAACCAGAAAG+TGG + Chr5:19446922-19446941 MsG0580025480.01.T01:CDS 40.0%
CAGAATCGCACATCAATCAT+AGG - Chr5:19447069-19447088 None:intergenic 40.0%
CTATCAGACAAGAAACTTCC+AGG + Chr5:19449031-19449050 MsG0580025480.01.T01:CDS 40.0%
CTATTCACAATGCTGGTAAG+TGG + Chr5:19446995-19447014 MsG0580025480.01.T01:intron 40.0%
CTGCTGGAAGATCTGATAAA+TGG + Chr5:19448297-19448316 MsG0580025480.01.T01:CDS 40.0%
CTGGAAGTTTCTTGTCTGAT+AGG - Chr5:19449033-19449052 None:intergenic 40.0%
GAGACGAAAAGCCCAAAATA+CGG - Chr5:19446727-19446746 None:intergenic 40.0%
GCAACATTAGGAGGTAAACA+TGG + Chr5:19448272-19448291 MsG0580025480.01.T01:CDS 40.0%
GGAGAAATAATTCTGCGAAG+TGG + Chr5:19447024-19447043 MsG0580025480.01.T01:intron 40.0%
GGTTGTGAAATTACAGGGAT+GGG + Chr5:19448949-19448968 MsG0580025480.01.T01:CDS 40.0%
TACAAACAGTAGGAGACAGT+TGG - Chr5:19446229-19446248 None:intergenic 40.0%
TCCTGCTTATGCTAAAAGTG+TGG + Chr5:19448973-19448992 MsG0580025480.01.T01:CDS 40.0%
TCTGTCCTTGATGCAATTCA+TGG + Chr5:19447627-19447646 MsG0580025480.01.T01:intron 40.0%
TGATGTGCGATTCTGATCAA+TGG + Chr5:19447074-19447093 MsG0580025480.01.T01:intron 40.0%
TGCATATACGAATGCAGATG+TGG + Chr5:19448928-19448947 MsG0580025480.01.T01:CDS 40.0%
TGGTTGTGAAATTACAGGGA+TGG + Chr5:19448948-19448967 MsG0580025480.01.T01:CDS 40.0%
TTAAGGGTCTGTTTGTGAGT+TGG + Chr5:19447738-19447757 MsG0580025480.01.T01:intron 40.0%
! GGATCATCACAGCTTTTGAA+AGG + Chr5:19446872-19446891 MsG0580025480.01.T01:CDS 40.0%
! TATGCTAAAAGTGTGGCACA+GGG + Chr5:19448980-19448999 MsG0580025480.01.T01:CDS 40.0%
! TGGTTGGCCATGATAAAAGT+GGG + Chr5:19447707-19447726 MsG0580025480.01.T01:intron 40.0%
! TTATCATGGCCAACCACTTT+TGG - Chr5:19447703-19447722 None:intergenic 40.0%
! TTATGCTAAAAGTGTGGCAC+AGG + Chr5:19448979-19448998 MsG0580025480.01.T01:CDS 40.0%
! TTTTCGTCTCTGTGGTTGAA+TGG + Chr5:19446737-19446756 MsG0580025480.01.T01:intron 40.0%
!! AAAAGTGGGTTGTGACCTTA+AGG + Chr5:19447721-19447740 MsG0580025480.01.T01:intron 40.0%
!! AAAGTGGGTTGTGACCTTAA+GGG + Chr5:19447722-19447741 MsG0580025480.01.T01:intron 40.0%
!! ATTTTTCAAAACGGTGTGGG+TGG + Chr5:19448586-19448605 MsG0580025480.01.T01:intron 40.0%
!! CACTTTCTGGTTGATTTCAG+TGG - Chr5:19446924-19446943 None:intergenic 40.0%
!! CTAAGTGTGTGTTTGGTTCT+AGG + Chr5:19446302-19446321 MsG0580025480.01.T01:intron 40.0%
!! GGTTCTAGGACGATGAAAAT+TGG + Chr5:19446316-19446335 MsG0580025480.01.T01:intron 40.0%
!! GTCACAACCCACTTTTATCA+TGG - Chr5:19447717-19447736 None:intergenic 40.0%
!! GTGGTTGAATGGTTCTGATT+TGG + Chr5:19446748-19446767 MsG0580025480.01.T01:intron 40.0%
!! TAGCTCTAAGATAAACCTCG+GGG - Chr5:19447888-19447907 None:intergenic 40.0%
!! TATCATGGCCAACCACTTTT+GGG - Chr5:19447702-19447721 None:intergenic 40.0%
!! TTTTTCAAAACGGTGTGGGT+GGG + Chr5:19448587-19448606 MsG0580025480.01.T01:intron 40.0%
!!! AGTTGGTTTTTGGAGGGTTT+TGG + Chr5:19447755-19447774 MsG0580025480.01.T01:intron 40.0%
!!! GTTTGTGAGTTGGTTTTTGG+AGG + Chr5:19447748-19447767 MsG0580025480.01.T01:intron 40.0%
!!! GTTTTTCTGGTTGTGGGATT+TGG - Chr5:19446049-19446068 None:intergenic 40.0%
AAGTACCTCGTAAGTTGTGG+TGG - Chr5:19446200-19446219 None:intergenic 45.0%
AATCATTTCAGACCCCATCC+CGG + Chr5:19447673-19447692 MsG0580025480.01.T01:intron 45.0%
AATCCTAGACTTGCAACCCT+CGG + Chr5:19447854-19447873 MsG0580025480.01.T01:intron 45.0%
AATTGCATCAAGGACAGAGG+AGG - Chr5:19447625-19447644 None:intergenic 45.0%
AGAGGAGGAAAAAACCAGAC+TGG - Chr5:19447610-19447629 None:intergenic 45.0%
AGATGAAGATTCAGCAAGGG+AGG + Chr5:19448874-19448893 MsG0580025480.01.T01:intron 45.0%
AGCATTTGCAGGGAGAAAGA+GGG - Chr5:19446159-19446178 None:intergenic 45.0%
AGTGCTCTGCTAGTCATGTA+AGG + Chr5:19448240-19448259 MsG0580025480.01.T01:intron 45.0%
ATGTCAGGCCATTTCAACTC+AGG - Chr5:19446824-19446843 None:intergenic 45.0%
CACACATAACGGCTACAGAA+AGG - Chr5:19447549-19447568 None:intergenic 45.0%
CACGAACCATATTGTTTCCG+AGG - Chr5:19446670-19446689 None:intergenic 45.0%
GCCTGACATCATGGAATCAT+GGG + Chr5:19446835-19446854 MsG0580025480.01.T01:CDS 45.0%
GTGCTCTGCTAGTCATGTAA+GGG + Chr5:19448241-19448260 MsG0580025480.01.T01:intron 45.0%
GTTGAAATGGCCTGACATCA+TGG + Chr5:19446826-19446845 MsG0580025480.01.T01:CDS 45.0%
TACAAATTGGGGAACCAGTC+TGG + Chr5:19447593-19447612 MsG0580025480.01.T01:intron 45.0%
TCCCATGATTCCATGATGTC+AGG - Chr5:19446839-19446858 None:intergenic 45.0%
TGTTTCCACCACAACTTACG+AGG + Chr5:19446192-19446211 MsG0580025480.01.T01:CDS 45.0%
! CGTAAGTTGTGGTGGAAACA+GGG - Chr5:19446192-19446211 None:intergenic 45.0%
! GCCACACTTTTAGCATAAGC+AGG - Chr5:19448977-19448996 None:intergenic 45.0%
! GTAAGTTGTGGTGGAAACAG+GGG - Chr5:19446191-19446210 None:intergenic 45.0%
! GTGGTTGGCCATGATAAAAG+TGG + Chr5:19447706-19447725 MsG0580025480.01.T01:intron 45.0%
! TCGTAAGTTGTGGTGGAAAC+AGG - Chr5:19446193-19446212 None:intergenic 45.0%
! TTGTCACAGACTGAAGCATC+AGG + Chr5:19448350-19448369 MsG0580025480.01.T01:CDS 45.0%
! TTTTGGGCTTTTCGTCTCTG+TGG + Chr5:19446729-19446748 MsG0580025480.01.T01:intron 45.0%
!! ACTATCAGAGTGTTGCAGTC+AGG + Chr5:19446594-19446613 MsG0580025480.01.T01:CDS 45.0%
!! TGAATGGTTCTGATTTGGGC+AGG + Chr5:19446753-19446772 MsG0580025480.01.T01:intron 45.0%
!! TGGTTTTTGGAGGGTTTTGG+AGG + Chr5:19447758-19447777 MsG0580025480.01.T01:intron 45.0%
!! TTTCTGGTTGTGGGATTTGG+AGG - Chr5:19446046-19446065 None:intergenic 45.0%
!!! GGTTTTTGGAGGGTTTTGGA+GGG + Chr5:19447759-19447778 MsG0580025480.01.T01:intron 45.0%
AAGTACAGTGCCTTCGCCTT+CGG - Chr5:19448127-19448146 None:intergenic 50.0%
AGGAAGAAACCTGAGAGCAG+CGG - Chr5:19446026-19446045 None:intergenic 50.0%
AGGGCAGCAGTTGCAACATT+AGG + Chr5:19448260-19448279 MsG0580025480.01.T01:intron 50.0%
GAGCATTTGCAGGGAGAAAG+AGG - Chr5:19446160-19446179 None:intergenic 50.0%
GCAGCAGTTGCAACATTAGG+AGG + Chr5:19448263-19448282 MsG0580025480.01.T01:CDS 50.0%
GGCCTGACATCATGGAATCA+TGG + Chr5:19446834-19446853 MsG0580025480.01.T01:CDS 50.0%
GGGCTATTCCTTCCACCATA+GGG + Chr5:19447244-19447263 MsG0580025480.01.T01:intron 50.0%
TAAGATAAACCTCGGGGCCA+AGG - Chr5:19447882-19447901 None:intergenic 50.0%
TGAAGAACCTTGCAGCCCTA+TGG - Chr5:19447262-19447281 None:intergenic 50.0%
TGGGCTATTCCTTCCACCAT+AGG + Chr5:19447243-19447262 MsG0580025480.01.T01:intron 50.0%
! CAAGCTCTTCAGCCACTTTC+TGG - Chr5:19446937-19446956 None:intergenic 50.0%
!! AAGAGCTTGCTACTGGTCTG+GGG + Chr5:19446948-19446967 MsG0580025480.01.T01:CDS 50.0%
!! GAAGAGCTTGCTACTGGTCT+GGG + Chr5:19446947-19446966 MsG0580025480.01.T01:CDS 50.0%
!! GCAGTGAAGGAGCATTTGCA+GGG - Chr5:19446169-19446188 None:intergenic 50.0%
!! TGAAGAGCTTGCTACTGGTC+TGG + Chr5:19446946-19446965 MsG0580025480.01.T01:CDS 50.0%
!!! ACTTTTGGGTTTCCGGGATG+GGG - Chr5:19447688-19447707 None:intergenic 50.0%
!!! CACTTTTGGGTTTCCGGGAT+GGG - Chr5:19447689-19447708 None:intergenic 50.0%
!!! CCAACCACTTTTGGGTTTCC+GGG - Chr5:19447694-19447713 None:intergenic 50.0%
!!! GCCAACCACTTTTGGGTTTC+CGG - Chr5:19447695-19447714 None:intergenic 50.0%
ACTTGCAACCCTCGGAACCT+TGG + Chr5:19447862-19447881 MsG0580025480.01.T01:intron 55.0%
AGAACCTTGCAGCCCTATGG+TGG - Chr5:19447259-19447278 None:intergenic 55.0%
CCATCCCGGAAACCCAAAAG+TGG + Chr5:19447687-19447706 MsG0580025480.01.T01:intron 55.0%
CCCGGAAACCCAAAAGTGGT+TGG + Chr5:19447691-19447710 MsG0580025480.01.T01:intron 55.0%
GATTCAGGAGGCGAAGAGTG+TGG + Chr5:19448533-19448552 MsG0580025480.01.T01:intron 55.0%
GGAAGAAACCTGAGAGCAGC+GGG - Chr5:19446025-19446044 None:intergenic 55.0%
GTGTGTTGGATGGGGGATTC+AGG + Chr5:19448518-19448537 MsG0580025480.01.T01:intron 55.0%
GTTCCGAGGGTTGCAAGTCT+AGG - Chr5:19447860-19447879 None:intergenic 55.0%
TCAAAACGGTGTGGGTGGGT+GGG + Chr5:19448591-19448610 MsG0580025480.01.T01:intron 55.0%
TGTTGGATGGGGGATTCAGG+AGG + Chr5:19448521-19448540 MsG0580025480.01.T01:intron 55.0%
TTCAAAACGGTGTGGGTGGG+TGG + Chr5:19448590-19448609 MsG0580025480.01.T01:intron 55.0%
! ATTCCAGGGCTGCTTGCTGA+AGG + Chr5:19448087-19448106 MsG0580025480.01.T01:intron 55.0%
! GGTTCTGACTCAGTAGCCGA+AGG + Chr5:19448108-19448127 MsG0580025480.01.T01:CDS 55.0%
!! GGAGGTAAACATGGTGCTGC+TGG + Chr5:19448281-19448300 MsG0580025480.01.T01:CDS 55.0%
!! GGCAGTGAAGGAGCATTTGC+AGG - Chr5:19446170-19446189 None:intergenic 55.0%
!! GTGGCTGAAGAGCTTGCTAC+TGG + Chr5:19446941-19446960 MsG0580025480.01.T01:CDS 55.0%
!!! CCACTTTTGGGTTTCCGGGA+TGG - Chr5:19447690-19447709 None:intergenic 55.0%
AAAACGGTGTGGGTGGGTGG+GGG + Chr5:19448593-19448612 MsG0580025480.01.T01:intron 60.0%
AAACCTGAGAGCAGCGGGAG+TGG - Chr5:19446020-19446039 None:intergenic 60.0%
CAAAACGGTGTGGGTGGGTG+GGG + Chr5:19448592-19448611 MsG0580025480.01.T01:intron 60.0%
CCTTCCACCATAGGGCTGCA+AGG + Chr5:19447252-19447271 MsG0580025480.01.T01:intron 60.0%
GAACCTTCAGCAAGCAGCCC+TGG - Chr5:19448093-19448112 None:intergenic 60.0%
GACTCAGTAGCCGAAGGCGA+AGG + Chr5:19448114-19448133 MsG0580025480.01.T01:CDS 60.0%
GGTGGAAACAGGGGCAGTGA+AGG - Chr5:19446182-19446201 None:intergenic 60.0%
TCATGGGAATCGCTCGCTGC+TGG + Chr5:19446851-19446870 MsG0580025480.01.T01:CDS 60.0%
! CCTTGCAGCCCTATGGTGGA+AGG - Chr5:19447255-19447274 None:intergenic 60.0%
TCACCACTCCCGCTGCTCTC+AGG + Chr5:19446014-19446033 MsG0580025480.01.T01:CDS 65.0%
ACCTCGGGGCCAAGGTTCCG+AGG - Chr5:19447874-19447893 None:intergenic 70.0%
CCTCGGGGCCAAGGTTCCGA+GGG - Chr5:19447873-19447892 None:intergenic 70.0%
CCCTCGGAACCTTGGCCCCG+AGG + Chr5:19447870-19447889 MsG0580025480.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 19445992 19449075 19445992 ID=MsG0580025480.01;Name=MsG0580025480.01
Chr5 mRNA 19445992 19449075 19445992 ID=MsG0580025480.01.T01;Parent=MsG0580025480.01;Name=MsG0580025480.01.T01;_AED=0.41;_eAED=0.42;_QI=9|0.66|0.57|1|0.83|0.71|7|0|350
Chr5 exon 19445992 19446213 19445992 ID=MsG0580025480.01.T01:exon:8240;Parent=MsG0580025480.01.T01
Chr5 exon 19446477 19446682 19446477 ID=MsG0580025480.01.T01:exon:8241;Parent=MsG0580025480.01.T01
Chr5 exon 19446775 19446969 19446775 ID=MsG0580025480.01.T01:exon:8242;Parent=MsG0580025480.01.T01
Chr5 exon 19447139 19447200 19447139 ID=MsG0580025480.01.T01:exon:8243;Parent=MsG0580025480.01.T01
Chr5 exon 19448094 19448160 19448094 ID=MsG0580025480.01.T01:exon:8244;Parent=MsG0580025480.01.T01
Chr5 exon 19448262 19448371 19448262 ID=MsG0580025480.01.T01:exon:8245;Parent=MsG0580025480.01.T01
Chr5 exon 19448876 19449075 19448876 ID=MsG0580025480.01.T01:exon:8246;Parent=MsG0580025480.01.T01
Chr5 five_prime_UTR 19445992 19446000 19445992 ID=MsG0580025480.01.T01:five_prime_utr;Parent=MsG0580025480.01.T01
Chr5 CDS 19446001 19446213 19446001 ID=MsG0580025480.01.T01:cds;Parent=MsG0580025480.01.T01
Chr5 CDS 19446477 19446682 19446477 ID=MsG0580025480.01.T01:cds;Parent=MsG0580025480.01.T01
Chr5 CDS 19446775 19446969 19446775 ID=MsG0580025480.01.T01:cds;Parent=MsG0580025480.01.T01
Chr5 CDS 19447139 19447200 19447139 ID=MsG0580025480.01.T01:cds;Parent=MsG0580025480.01.T01
Chr5 CDS 19448094 19448160 19448094 ID=MsG0580025480.01.T01:cds;Parent=MsG0580025480.01.T01
Chr5 CDS 19448262 19448371 19448262 ID=MsG0580025480.01.T01:cds;Parent=MsG0580025480.01.T01
Chr5 CDS 19448876 19449075 19448876 ID=MsG0580025480.01.T01:cds;Parent=MsG0580025480.01.T01
Gene Sequence

>MsG0580025480.01.T01

ATGGCAGCTACTATCACCACTCCCGCTGCTCTCAGGTTTCTTCCTCCAAATCCCACAACCAGAAAAACATTCAACTTCTTCTCAATTCTAAAACCAAATTTCAACTCACTTCGTTCATTCTCCCATTCATCGTTATTTTCTCAATCTCACAAATACCCTCTTTCTCCCTGCAAATGCTCCTTCACTGCCCCTGTTTCCACCACAACTTACGAGTATAACAAAATGCAGTTTTCTGATAATGCTTCAGAGATGGAGTTAAGATTAAATATAGGAAACATGGATGTAAGAAGCACAAAAGACATATCGGTTGATGCAAACGATACATCTTTAACTATCAGAGTGTTGCAGTCAGGATCTCCCATTACGTTGATAGACACTAATCCTCTTTTTGACAGGATTAAACCCTCGGAAACAATATGGTATATAGATGATGATCATCTTGTGGTGAATTTCAAGAAAAATGATCCTGAGTTGAAATGGCCTGACATCATGGAATCATGGGAATCGCTCGCTGCTGGATCATCACAGCTTTTGAAAGGAACATCAATCTATCTTGTTGGTGATTCCACTGAAATCAACCAGAAAGTGGCTGAAGAGCTTGCTACTGGTCTGGGGTACACGCCACTAAGTACAAAAGAGTTGCTTGAAACTTATTCCAATCAAACCGTGGATTCATGGCTGCTTGCTGAAGGTTCTGACTCAGTAGCCGAAGGCGAAGGCACTGTACTTGAAAGCATAAGTAGGGCAGCAGTTGCAACATTAGGAGGTAAACATGGTGCTGCTGGAAGATCTGATAAATGGCGACATCTTTATGCAGGATTTACTGTCTGGTTGTCACAGACTGAAGCATCAGATGAAGATTCAGCAAGGGAGGAGACGCACAGAAACGTCAAAGATCGCATAACTGCATATACGAATGCAGATGTGGTTGTGAAATTACAGGGATGGGATCCTGCTTATGCTAAAAGTGTGGCACAGGGATGTTTGAGTGCCCTAAAACAGTTAATCCTATCAGACAAGAAACTTCCAGGTACTTGTGCTGATTTATTTTAA

Protein sequence

>MsG0580025480.01.T01

MAATITTPAALRFLPPNPTTRKTFNFFSILKPNFNSLRSFSHSSLFSQSHKYPLSPCKCSFTAPVSTTTYEYNKMQFSDNASEMELRLNIGNMDVRSTKDISVDANDTSLTIRVLQSGSPITLIDTNPLFDRIKPSETIWYIDDDHLVVNFKKNDPELKWPDIMESWESLAAGSSQLLKGTSIYLVGDSTEINQKVAEELATGLGYTPLSTKELLETYSNQTVDSWLLAEGSDSVAEGEGTVLESISRAAVATLGGKHGAAGRSDKWRHLYAGFTVWLSQTEASDEDSAREETHRNVKDRITAYTNADVVVKLQGWDPAYAKSVAQGCLSALKQLILSDKKLPGTCADLF*