AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015971.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015971.01.T01 MTR_3g080800 91.480 223 10 3 1 222 1 215 4.91e-137 383
MsG0380015971.01.T01 MTR_1g060610 44.286 140 75 2 73 209 5 144 3.42e-28 104
MsG0380015971.01.T02 MTR_3g080800 91.480 223 10 3 1 222 1 215 4.91e-137 383
MsG0380015971.01.T02 MTR_1g060610 44.286 140 75 2 73 209 5 144 3.42e-28 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015971.01.T01 AT1G32990 79.310 203 35 3 20 222 26 221 1.08e-104 301
MsG0380015971.01.T01 AT5G51610 52.941 170 40 2 51 219 48 178 4.14e-46 151
MsG0380015971.01.T01 AT4G35490 46.377 138 71 2 75 209 13 150 6.88e-31 111
MsG0380015971.01.T01 AT4G35490 46.377 138 71 2 75 209 13 150 6.88e-31 111
MsG0380015971.01.T02 AT1G32990 79.310 203 35 3 20 222 26 221 1.08e-104 301
MsG0380015971.01.T02 AT5G51610 52.941 170 40 2 51 219 48 178 4.14e-46 151
MsG0380015971.01.T02 AT4G35490 46.377 138 71 2 75 209 13 150 6.88e-31 111
MsG0380015971.01.T02 AT4G35490 46.377 138 71 2 75 209 13 150 6.88e-31 111

Find 30 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCCTTGCCACCACCGGGTT+TGG 0.203659 3:+77361965 None:intergenic
GCCTTGCCACCACCGGGTTT+GGG 0.296743 3:+77361966 None:intergenic
GGAAGCCATTGAAATCTTAA+AGG 0.326130 3:+77362172 None:intergenic
TTTCTTGGCCTTGCCACCAC+CGG 0.430649 3:+77361959 None:intergenic
TGTTTCCTTTAAGATTTCAA+TGG 0.435132 3:-77362177 MsG0380015971.01.T01:exon
TGAGTGGTGGGTAGGGAAAG+AGG 0.454086 3:+77362032 None:intergenic
TCAATGGCTTCCACTCTCAT+TGG 0.454304 3:-77362161 MsG0380015971.01.T01:CDS
TTCTTGGCCTTGCCACCACC+GGG 0.468969 3:+77361960 None:intergenic
TAAAATAGTGTGTAGGATAG+TGG 0.484375 3:-77362251 MsG0380015971.01.T01:five_prime_UTR
GAGTGGTGGGTAGGGAAAGA+GGG 0.497515 3:+77362033 None:intergenic
TGGAGAATGAGTGGTGGGTA+GGG 0.504513 3:+77362025 None:intergenic
ATGAATAACTGAGACTCCAC+TGG 0.507026 3:+77362073 None:intergenic
ACCGGGTTTGGGTGGAGCCA+TGG 0.512574 3:+77361977 None:intergenic
ACCCAAACCCGGTGGTGGCA+AGG 0.516417 3:-77361967 MsG0380015971.01.T01:CDS
AGTTGAAAACATTGAAGAAG+AGG 0.519538 3:+77362118 None:intergenic
TTGGAGAATGAGTGGTGGGT+AGG 0.522674 3:+77362024 None:intergenic
TTGCCACCACCGGGTTTGGG+TGG 0.523478 3:+77361969 None:intergenic
GCTCCACCCAAACCCGGTGG+TGG 0.530005 3:-77361972 MsG0380015971.01.T01:CDS
GCCATGGCTCCACCCAAACC+CGG 0.560448 3:-77361978 MsG0380015971.01.T01:CDS
GGTGGTGGCAAGGCCAAGAA+AGG 0.566703 3:-77361957 MsG0380015971.01.T01:intron
TGACGGAGCGCCAATGAGAG+TGG 0.568496 3:+77362151 None:intergenic
CGATAAGTAAAATAGTGTGT+AGG 0.591620 3:-77362258 MsG0380015971.01.T02:five_prime_UTR
ACGCTTCAAAATTACTGCCA+TGG 0.592720 3:-77361994 MsG0380015971.01.T01:CDS
TGAGTTGGAGAATGAGTGGT+GGG 0.593408 3:+77362020 None:intergenic
TTGAGTTGGAGAATGAGTGG+TGG 0.628018 3:+77362019 None:intergenic
GAAGAGGAAGAACAAAGTGA+CGG 0.645831 3:+77362134 None:intergenic
TGAATAACTGAGACTCCACT+GGG 0.661810 3:+77362074 None:intergenic
ATGGCTCCACCCAAACCCGG+TGG 0.681058 3:-77361975 MsG0380015971.01.T01:CDS
TCTTTGAGTTGGAGAATGAG+TGG 0.685546 3:+77362016 None:intergenic
AAATTATCGTTAAAACCCAG+TGG 0.702152 3:-77362089 MsG0380015971.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACATAACATAATATCAA+AGG + Chr3:77360526-77360545 None:intergenic 15.0%
!! TAACATAACATAATATCAAA+GGG + Chr3:77360525-77360544 None:intergenic 15.0%
!! TGAACTATATTAAAATTGTT+AGG - Chr3:77361100-77361119 MsG0380015971.01.T01:intron 15.0%
!! AAAGCAAAGAAAAAGAAAAA+GGG + Chr3:77359830-77359849 None:intergenic 20.0%
!! AACATAACATAATATCAAAG+GGG + Chr3:77360524-77360543 None:intergenic 20.0%
!! AGTTGTAATATATGAAACAT+AGG - Chr3:77360648-77360667 MsG0380015971.01.T01:intron 20.0%
!! ATGTAATAGACTTTATAGTT+GGG - Chr3:77361582-77361601 MsG0380015971.01.T01:intron 20.0%
!! ATTCTAACAAATTATATCAC+AGG + Chr3:77360556-77360575 None:intergenic 20.0%
!! CATACTGTATAAAAAAAATC+AGG + Chr3:77361565-77361584 None:intergenic 20.0%
!! TATGTAATAGACTTTATAGT+TGG - Chr3:77361581-77361600 MsG0380015971.01.T01:intron 20.0%
!!! TATTTTGTTGTGTTATTTTC+AGG - Chr3:77360430-77360449 MsG0380015971.01.T01:intron 20.0%
! AAAAAAAATCAGGTACAGAA+AGG + Chr3:77361555-77361574 None:intergenic 25.0%
! AAAGAAAAAGAAAAAGGGTA+TGG + Chr3:77359825-77359844 None:intergenic 25.0%
! AAATTGAATCACAGAGTAAA+CGG + Chr3:77361201-77361220 None:intergenic 25.0%
! AAGATAGTAGCAGAAAATAT+TGG - Chr3:77361612-77361631 MsG0380015971.01.T01:intron 25.0%
! AATGAAATATAGCAATGACT+AGG + Chr3:77360958-77360977 None:intergenic 25.0%
! AGATAGTAGCAGAAAATATT+GGG - Chr3:77361613-77361632 MsG0380015971.01.T01:intron 25.0%
! AGGATCATTGAAACTTAAAT+AGG - Chr3:77361023-77361042 MsG0380015971.01.T01:intron 25.0%
! ATGAAATATAGCAATGACTA+GGG + Chr3:77360957-77360976 None:intergenic 25.0%
! ATTAAAACACCTAGTAAACA+GGG + Chr3:77361479-77361498 None:intergenic 25.0%
! ATTGAAACTTAAATAGGGTA+AGG - Chr3:77361029-77361048 MsG0380015971.01.T01:intron 25.0%
! CAAAGCAAAGAAAAAGAAAA+AGG + Chr3:77359831-77359850 None:intergenic 25.0%
! CTAAATATCCAATATCAGTA+TGG + Chr3:77361129-77361148 None:intergenic 25.0%
! GGATCATTGAAACTTAAATA+GGG - Chr3:77361024-77361043 MsG0380015971.01.T01:intron 25.0%
!! CACAGTATTTTACATATCAT+TGG + Chr3:77361351-77361370 None:intergenic 25.0%
!! CTGTCATTAATTTAGAGTTA+AGG - Chr3:77361003-77361022 MsG0380015971.01.T01:intron 25.0%
!! TTACAACATGTTTGTGTTTT+TGG - Chr3:77360155-77360174 MsG0380015971.01.T01:CDS 25.0%
!!! ATGATCTATTTGTTTTAAGC+TGG - Chr3:77361228-77361247 MsG0380015971.01.T01:intron 25.0%
!!! TATTGGTTTGATAGATTATC+AGG - Chr3:77361727-77361746 MsG0380015971.01.T01:CDS 25.0%
!!! TGTTTCCTTTAAGATTTCAA+TGG - Chr3:77359849-77359868 MsG0380015971.01.T01:three_prime_UTR 25.0%
AAAACGAAGCAGATATGTTA+AGG - Chr3:77361703-77361722 MsG0380015971.01.T01:CDS 30.0%
AAATTATCGTTAAAACCCAG+TGG - Chr3:77359937-77359956 MsG0380015971.01.T01:three_prime_UTR 30.0%
AGCAGATATGTTAAGGTTAT+TGG - Chr3:77361710-77361729 MsG0380015971.01.T01:CDS 30.0%
AGTTGAAAACATTGAAGAAG+AGG + Chr3:77359911-77359930 None:intergenic 30.0%
ATACCTTCAGTATAAAGTGT+CGG - Chr3:77360812-77360831 MsG0380015971.01.T01:intron 30.0%
ATATAGTTCACTTAGTTGCA+AGG + Chr3:77361090-77361109 None:intergenic 30.0%
ATCAAAGACAGTGATTTCAA+CGG + Chr3:77360338-77360357 None:intergenic 30.0%
ATTAATATCAGCCACAAAGT+TGG - Chr3:77362211-77362230 MsG0380015971.01.T01:intron 30.0%
ATTAGTCATTAGCTGGAATT+TGG - Chr3:77360916-77360935 MsG0380015971.01.T01:intron 30.0%
ATTTACTAGAGATGCATTAG+TGG + Chr3:77360608-77360627 None:intergenic 30.0%
CATTAAAACACCTAGTAAAC+AGG + Chr3:77361480-77361499 None:intergenic 30.0%
CGATAAGTAAAATAGTGTGT+AGG - Chr3:77359768-77359787 MsG0380015971.01.T01:three_prime_UTR 30.0%
CTCTAAATTAATGACAGTTG+AGG + Chr3:77361000-77361019 None:intergenic 30.0%
GAAAGTTATTAGTCATTAGC+TGG - Chr3:77360909-77360928 MsG0380015971.01.T01:intron 30.0%
GCTAACTATAAGACACTATT+GGG - Chr3:77360852-77360871 MsG0380015971.01.T01:intron 30.0%
TAAAATAGTGTGTAGGATAG+TGG - Chr3:77359775-77359794 MsG0380015971.01.T01:three_prime_UTR 30.0%
TCCAAACTCTATTATACTGA+TGG - Chr3:77361798-77361817 MsG0380015971.01.T01:CDS 30.0%
TCCATCAGTATAATAGAGTT+TGG + Chr3:77361802-77361821 None:intergenic 30.0%
TGATTGTTGTATGTAATGAC+TGG - Chr3:77360739-77360758 MsG0380015971.01.T01:intron 30.0%
TTAAAACACCTAGTAAACAG+GGG + Chr3:77361478-77361497 None:intergenic 30.0%
TTTAAGCTGGATCTAATCAA+GGG - Chr3:77361241-77361260 MsG0380015971.01.T01:intron 30.0%
! CTAGTAAATTAGCCTGTTAT+TGG - Chr3:77360619-77360638 MsG0380015971.01.T01:intron 30.0%
! TTTTAAGCTGGATCTAATCA+AGG - Chr3:77361240-77361259 MsG0380015971.01.T01:intron 30.0%
!! CTGTTTACTAGGTGTTTTAA+TGG - Chr3:77361478-77361497 MsG0380015971.01.T01:intron 30.0%
!! TTCAAAGGGTGTTAACATTA+TGG - Chr3:77360258-77360277 MsG0380015971.01.T01:intron 30.0%
!!! AAGGTAAGTTTTGTTCAAGA+TGG + Chr3:77361536-77361555 None:intergenic 30.0%
!!! AGGGAATGAGATTTTTTTAG+TGG - Chr3:77361403-77361422 MsG0380015971.01.T01:intron 30.0%
!!! AGGTAAGTTTTGTTCAAGAT+GGG + Chr3:77361535-77361554 None:intergenic 30.0%
!!! GAAGTTGTTTTTACCTTTCT+TGG + Chr3:77360085-77360104 None:intergenic 30.0%
!!! TTACTAGGTGTTTTAATGGA+TGG - Chr3:77361482-77361501 MsG0380015971.01.T01:intron 30.0%
!!! TTTTTTAGTGGTTACATTCG+AGG - Chr3:77361415-77361434 MsG0380015971.01.T01:intron 30.0%
AAATTAATGACAGTTGAGGC+AGG + Chr3:77360996-77361015 None:intergenic 35.0%
ACAACTTGTAGACCAATAAC+AGG + Chr3:77360634-77360653 None:intergenic 35.0%
ACTATAAGACACTATTGGGT+CGG - Chr3:77360856-77360875 MsG0380015971.01.T01:intron 35.0%
AGAATTTCTCCTACACTACA+AGG - Chr3:77361383-77361402 MsG0380015971.01.T01:intron 35.0%
GAATTTCTCCTACACTACAA+GGG - Chr3:77361384-77361403 MsG0380015971.01.T01:intron 35.0%
GGAAGCCATTGAAATCTTAA+AGG + Chr3:77359857-77359876 None:intergenic 35.0%
GGCTAACTATAAGACACTAT+TGG - Chr3:77360851-77360870 MsG0380015971.01.T01:intron 35.0%
GTCTTGAAATATGATCAGTC+TGG - Chr3:77361655-77361674 MsG0380015971.01.T01:intron 35.0%
TACAACAATTGCTTCTGCTT+GGG + Chr3:77362026-77362045 None:intergenic 35.0%
TACCATAGTCTATATAGTGC+CGG + Chr3:77360699-77360718 None:intergenic 35.0%
TCAAAGACAGTGATTTCAAC+GGG + Chr3:77360337-77360356 None:intergenic 35.0%
TCAGCTATGAGAATTATAGC+AGG - Chr3:77361954-77361973 MsG0380015971.01.T01:intron 35.0%
TTAAGAAGTAGAACAGAAGC+AGG + Chr3:77360488-77360507 None:intergenic 35.0%
TTACAACAATTGCTTCTGCT+TGG + Chr3:77362027-77362046 None:intergenic 35.0%
TTAGGCATCCATACTGATAT+TGG - Chr3:77361118-77361137 MsG0380015971.01.T01:intron 35.0%
TTCAACGGGAATGATATAAC+CGG + Chr3:77360323-77360342 None:intergenic 35.0%
! AAAGAGGGTTTTTGTGTTCA+AGG + Chr3:77359981-77360000 None:intergenic 35.0%
! AAGAGGGTTTTTGTGTTCAA+GGG + Chr3:77359980-77359999 None:intergenic 35.0%
! AAGGACTTTTTACACTTGGA+GGG + Chr3:77362065-77362084 None:intergenic 35.0%
! ACATTCGAGGTATTCTTACA+AGG - Chr3:77361428-77361447 MsG0380015971.01.T01:intron 35.0%
! AGATCACACAGGACATTTTA+TGG - Chr3:77362093-77362112 MsG0380015971.01.T01:CDS 35.0%
! GAAAAAGAAAAAGGGTATGG+TGG + Chr3:77359822-77359841 None:intergenic 35.0%
! TCAAGATGGGGAGATTTTAA+TGG + Chr3:77361522-77361541 None:intergenic 35.0%
!! AATTCTCATAGCTGATTCGA+TGG + Chr3:77361949-77361968 None:intergenic 35.0%
!! ATGGACTGATTTGTTGTGTA+GGG - Chr3:77361817-77361836 MsG0380015971.01.T01:CDS 35.0%
!!! ATTTTGAAGCGTCTTTGAGT+TGG + Chr3:77360024-77360043 None:intergenic 35.0%
!!! GGTAAGTTTTGTTCAAGATG+GGG + Chr3:77361534-77361553 None:intergenic 35.0%
!!! TTTCCTACTTTTTGTGCCTT+GGG + Chr3:77361864-77361883 None:intergenic 35.0%
!!! TTTGTGTTTTTGGCAAACAG+TGG - Chr3:77360165-77360184 MsG0380015971.01.T01:CDS 35.0%
!!! TTTTCCTACTTTTTGTGCCT+TGG + Chr3:77361865-77361884 None:intergenic 35.0%
AAGGCTACATCCACTACTTA+TGG - Chr3:77361447-77361466 MsG0380015971.01.T01:intron 40.0%
ACGCTTCAAAATTACTGCCA+TGG - Chr3:77360032-77360051 MsG0380015971.01.T01:CDS 40.0%
AGATTCACTCGTAAACAGGA+TGG + Chr3:77361766-77361785 None:intergenic 40.0%
AGTGGTTGGAATCATAAAGC+TGG - Chr3:77360183-77360202 MsG0380015971.01.T01:CDS 40.0%
ATCTCATTCCCTTGTAGTGT+AGG + Chr3:77361395-77361414 None:intergenic 40.0%
ATGAATAACTGAGACTCCAC+TGG + Chr3:77359956-77359975 None:intergenic 40.0%
ATGGTCTCACAATTCAAGTC+CGG + Chr3:77361930-77361949 None:intergenic 40.0%
CACTAGATTCACTCGTAAAC+AGG + Chr3:77361770-77361789 None:intergenic 40.0%
CCAAGTGTAAAAAGTCCTTG+TGG - Chr3:77362066-77362085 MsG0380015971.01.T01:CDS 40.0%
GAAGAGGAAGAACAAAGTGA+CGG + Chr3:77359895-77359914 None:intergenic 40.0%
GTTCTACTTCTTAAAGCTGC+TGG - Chr3:77360494-77360513 MsG0380015971.01.T01:intron 40.0%
TCAACGGGAATGATATAACC+GGG + Chr3:77360322-77360341 None:intergenic 40.0%
TGAATAACTGAGACTCCACT+GGG + Chr3:77359955-77359974 None:intergenic 40.0%
TTCTGCTTGGGTTCAAGAAT+AGG + Chr3:77362014-77362033 None:intergenic 40.0%
! AAAAAGGGTATGGTGGAGTT+CGG + Chr3:77359815-77359834 None:intergenic 40.0%
! AATTGCTTCTGAGAAGTTGC+CGG - Chr3:77361908-77361927 MsG0380015971.01.T01:intron 40.0%
! CAAGGACTTTTTACACTTGG+AGG + Chr3:77362066-77362085 None:intergenic 40.0%
! CCACAAGGACTTTTTACACT+TGG + Chr3:77362069-77362088 None:intergenic 40.0%
! CTGAAGGTATGTCCAAGTAT+TGG + Chr3:77360802-77360821 None:intergenic 40.0%
!! GATGGACTGATTTGTTGTGT+AGG - Chr3:77361816-77361835 MsG0380015971.01.T01:CDS 40.0%
!! TCTTTGAGTTGGAGAATGAG+TGG + Chr3:77360013-77360032 None:intergenic 40.0%
!! TGGACTGATTTGTTGTGTAG+GGG - Chr3:77361818-77361837 MsG0380015971.01.T01:CDS 40.0%
!!! TGTTTTTGGCAAACAGTGGT+TGG - Chr3:77360169-77360188 MsG0380015971.01.T01:CDS 40.0%
!!! TTCCTACTTTTTGTGCCTTG+GGG + Chr3:77361863-77361882 None:intergenic 40.0%
AAAGGGTTCAAAAGACCCCA+AGG - Chr3:77361845-77361864 MsG0380015971.01.T01:intron 45.0%
AGAAGTAGAACAGAAGCAGG+TGG + Chr3:77360485-77360504 None:intergenic 45.0%
AGGGGTTCAACCATAAGTAG+TGG + Chr3:77361460-77361479 None:intergenic 45.0%
CACACCAAGTACCAACTTTG+TGG + Chr3:77362225-77362244 None:intergenic 45.0%
CACCGGCACTATATAGACTA+TGG - Chr3:77360694-77360713 MsG0380015971.01.T01:intron 45.0%
CTGTGTGATCTAGTACCACA+AGG + Chr3:77362084-77362103 None:intergenic 45.0%
CTTGTGGTACTAGATCACAC+AGG - Chr3:77362082-77362101 MsG0380015971.01.T01:CDS 45.0%
GAGAATTATAGCAGGCACAG+CGG - Chr3:77361962-77361981 MsG0380015971.01.T01:CDS 45.0%
GCTAGAACTGCTGATAAACC+CGG - Chr3:77360301-77360320 MsG0380015971.01.T01:intron 45.0%
TAATGACAGTTGAGGCAGGA+AGG + Chr3:77360992-77361011 None:intergenic 45.0%
TCAATGGCTTCCACTCTCAT+TGG - Chr3:77359865-77359884 MsG0380015971.01.T01:three_prime_UTR 45.0%
TGCTTGGGTTCAAGAATAGG+AGG + Chr3:77362011-77362030 None:intergenic 45.0%
TGGTTGAACCCCTGTTTACT+AGG - Chr3:77361467-77361486 MsG0380015971.01.T01:intron 45.0%
TGTTGTGTAGGGGTGGAAAA+GGG - Chr3:77361828-77361847 MsG0380015971.01.T01:CDS 45.0%
TTGTTGTGTAGGGGTGGAAA+AGG - Chr3:77361827-77361846 MsG0380015971.01.T01:CDS 45.0%
! ATAAAGCTGGCTCTTGAAGC+CGG - Chr3:77360196-77360215 MsG0380015971.01.T01:intron 45.0%
! GCACCGACACTTTATACTGA+AGG + Chr3:77360818-77360837 None:intergenic 45.0%
! TGAGTTGGAGAATGAGTGGT+GGG + Chr3:77360009-77360028 None:intergenic 45.0%
!! ACTGATTTGTTGTGTAGGGG+TGG - Chr3:77361821-77361840 MsG0380015971.01.T01:CDS 45.0%
!! CACAAAGTTGGTACTTGGTG+TGG - Chr3:77362223-77362242 MsG0380015971.01.T01:five_prime_UTR 45.0%
!! TCAGCCACAAAGTTGGTACT+TGG - Chr3:77362218-77362237 MsG0380015971.01.T01:five_prime_UTR 45.0%
!! TCCAAGTATTGGACACGTGT+CGG + Chr3:77360791-77360810 None:intergenic 45.0%
!! TTGAGTTGGAGAATGAGTGG+TGG + Chr3:77360010-77360029 None:intergenic 45.0%
!! GTATTTAAATTTAAATATAA+TGG + Chr3:77362180-77362199 None:intergenic 5.0%
ACACCCTTTGAACCAAGAGC+CGG + Chr3:77360250-77360269 None:intergenic 50.0%
ACCGACACGTGTCCAATACT+TGG - Chr3:77360787-77360806 MsG0380015971.01.T01:intron 50.0%
CACTATTGGGTCGGCATGTT+TGG - Chr3:77360865-77360884 MsG0380015971.01.T01:intron 50.0%
CATAGGCACCACACTAGATG+CGG - Chr3:77360665-77360684 MsG0380015971.01.T01:intron 50.0%
GACCCCAAGGCACAAAAAGT+AGG - Chr3:77361858-77361877 MsG0380015971.01.T01:intron 50.0%
! TAAAGCTGGCTCTTGAAGCC+GGG - Chr3:77360197-77360216 MsG0380015971.01.T01:intron 50.0%
!! GTCGGTGCTACGTACTTGTA+AGG - Chr3:77360830-77360849 MsG0380015971.01.T01:intron 50.0%
!! TGGAGAATGAGTGGTGGGTA+GGG + Chr3:77360004-77360023 None:intergenic 50.0%
!! TTGGAGAATGAGTGGTGGGT+AGG + Chr3:77360005-77360024 None:intergenic 50.0%
ACTAGATGCGGACACGACAC+CGG - Chr3:77360677-77360696 MsG0380015971.01.T01:intron 55.0%
AGCAGGCACAGCGGCAAATA+TGG - Chr3:77361971-77361990 MsG0380015971.01.T01:CDS 55.0%
GCAGGCACAGCGGCAAATAT+GGG - Chr3:77361972-77361991 MsG0380015971.01.T01:CDS 55.0%
TGACAGTTGAGGCAGGAAGG+AGG + Chr3:77360989-77361008 None:intergenic 55.0%
TGTCGTGTCCGCATCTAGTG+TGG + Chr3:77360676-77360695 None:intergenic 55.0%
! GGACCGGCTCTTGGTTCAAA+GGG - Chr3:77360244-77360263 MsG0380015971.01.T01:intron 55.0%
! TGGACCGGCTCTTGGTTCAA+AGG - Chr3:77360243-77360262 MsG0380015971.01.T01:intron 55.0%
!! GAGTGGTGGGTAGGGAAAGA+GGG + Chr3:77359996-77360015 None:intergenic 55.0%
!! TGAGTGGTGGGTAGGGAAAG+AGG + Chr3:77359997-77360016 None:intergenic 55.0%
!! TTTCTTGGCCTTGCCACCAC+CGG + Chr3:77360070-77360089 None:intergenic 55.0%
GAACCAAGAGCCGGTCCAAC+CGG + Chr3:77360241-77360260 None:intergenic 60.0%
! GGTGGTGGCAAGGCCAAGAA+AGG - Chr3:77360069-77360088 MsG0380015971.01.T01:CDS 60.0%
! TGACGGAGCGCCAATGAGAG+TGG + Chr3:77359878-77359897 None:intergenic 60.0%
!! TTCTTGGCCTTGCCACCACC+GGG + Chr3:77360069-77360088 None:intergenic 60.0%
ACCGGGTTTGGGTGGAGCCA+TGG + Chr3:77360052-77360071 None:intergenic 65.0%
ATGGCTCCACCCAAACCCGG+TGG - Chr3:77360051-77360070 MsG0380015971.01.T01:CDS 65.0%
GCCATGGCTCCACCCAAACC+CGG - Chr3:77360048-77360067 MsG0380015971.01.T01:CDS 65.0%
GCCTTGCCACCACCGGGTTT+GGG + Chr3:77360063-77360082 None:intergenic 65.0%
GGGTCGGCATGTTTGGCCAG+CGG - Chr3:77360872-77360891 MsG0380015971.01.T01:intron 65.0%
TCGCAGTGCGTAGTTGCCGC+TGG + Chr3:77360891-77360910 None:intergenic 65.0%
TGAAGCCGGGAAGGCGACAC+CGG - Chr3:77360210-77360229 MsG0380015971.01.T01:intron 65.0%
TTGCCACCACCGGGTTTGGG+TGG + Chr3:77360060-77360079 None:intergenic 65.0%
! ACCCAAACCCGGTGGTGGCA+AGG - Chr3:77360059-77360078 MsG0380015971.01.T01:CDS 65.0%
! GCTGGCTCTTGAAGCCGGGA+AGG - Chr3:77360201-77360220 MsG0380015971.01.T01:intron 65.0%
CCAAGAGCCGGTCCAACCGG+TGG + Chr3:77360238-77360257 None:intergenic 70.0%
GCTCCACCCAAACCCGGTGG+TGG - Chr3:77360054-77360073 MsG0380015971.01.T01:CDS 70.0%
GGCCTTGCCACCACCGGGTT+TGG + Chr3:77360064-77360083 None:intergenic 70.0%
! ACCGGCTCCACCGGTTGGAC+CGG - Chr3:77360228-77360247 MsG0380015971.01.T01:intron 70.0%
! CCACCGGTTGGACCGGCTCT+TGG - Chr3:77360235-77360254 MsG0380015971.01.T01:intron 70.0%
!! GAAGGCGACACCGGCTCCAC+CGG - Chr3:77360219-77360238 MsG0380015971.01.T01:intron 70.0%
!! TGGAGCCGGTGTCGCCTTCC+CGG + Chr3:77360218-77360237 None:intergenic 70.0%
GCCGGTCCAACCGGTGGAGC+CGG + Chr3:77360232-77360251 None:intergenic 75.0%
!! GCGACACCGGCTCCACCGGT+TGG - Chr3:77360223-77360242 MsG0380015971.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 77359745 77362303 77359745 ID=MsG0380015971.01;Name=MsG0380015971.01
Chr3 mRNA 77359745 77362271 77359745 ID=MsG0380015971.01.T01;Parent=MsG0380015971.01;Name=MsG0380015971.01.T01;_AED=0.44;_eAED=0.44;_QI=71|1|1|1|0.75|0.6|5|257|222
Chr3 exon 77361958 77362197 77361958 ID=MsG0380015971.01.T01:exon:14592;Parent=MsG0380015971.01.T01
Chr3 exon 77362218 77362271 77362218 ID=MsG0380015971.01.T01:exon:14591;Parent=MsG0380015971.01.T01
Chr3 five_prime_UTR 77362218 77362271 77362218 ID=MsG0380015971.01.T01:five_prime_utr;Parent=MsG0380015971.01.T01
Chr3 five_prime_UTR 77362181 77362197 77362181 ID=MsG0380015971.01.T01:five_prime_utr;Parent=MsG0380015971.01.T01
Chr3 CDS 77361958 77362180 77361958 ID=MsG0380015971.01.T01:cds;Parent=MsG0380015971.01.T01
Chr3 CDS 77361691 77361863 77361691 ID=MsG0380015971.01.T01:cds;Parent=MsG0380015971.01.T01
Chr3 CDS 77361533 77361596 77361533 ID=MsG0380015971.01.T01:cds;Parent=MsG0380015971.01.T01
Chr3 CDS 77360002 77360210 77360002 ID=MsG0380015971.01.T01:cds;Parent=MsG0380015971.01.T01
Chr3 three_prime_UTR 77359745 77360001 77359745 ID=MsG0380015971.01.T01:three_prime_utr;Parent=MsG0380015971.01.T01
Chr3 mRNA 77359745 77362303 77359745 ID=MsG0380015971.01.T02;Parent=MsG0380015971.01;Name=MsG0380015971.01.T02;_AED=0.43;_eAED=0.43;_QI=123|1|1|1|1|1|4|257|222
Chr3 exon 77361958 77362303 77361958 ID=MsG0380015971.01.T02:exon:14596;Parent=MsG0380015971.01.T02
Chr3 five_prime_UTR 77362181 77362303 77362181 ID=MsG0380015971.01.T02:five_prime_utr;Parent=MsG0380015971.01.T02
Chr3 CDS 77361958 77362180 77361958 ID=MsG0380015971.01.T02:cds;Parent=MsG0380015971.01.T02
Chr3 CDS 77361691 77361863 77361691 ID=MsG0380015971.01.T02:cds;Parent=MsG0380015971.01.T02
Chr3 CDS 77361533 77361596 77361533 ID=MsG0380015971.01.T02:cds;Parent=MsG0380015971.01.T02
Chr3 CDS 77360002 77360210 77360002 ID=MsG0380015971.01.T02:cds;Parent=MsG0380015971.01.T02
Chr3 three_prime_UTR 77359745 77360001 77359745 ID=MsG0380015971.01.T02:three_prime_utr;Parent=MsG0380015971.01.T02
Gene Sequence

>MsG0380015971.01.T01

ATGGCTTCCACTCTCATTGGCGCTCCGTCACTTTGTTCTTCCTCTTCTTCAATGTTTTCAACTCATGTCAAATTATCGTTAAAACCCAGTGGAGTCTCAGTTATTCATTCCCTTGAACACAAAAACCCTCTTTCCCTACCCACCACTCATTCTCCAACTCAAAGACGCTTCAAAATTACTGCCATGGCTCCACCCAAACCCGGTGGTGGCAAGGCCAAGAAAGTGGTTGGAATCATAAAGCTGGCTCTTGAAGCCGGGAAGGCGACACCGGCTCCACCGGTTGGACCGGCTCTTGGTTCAAAGGGTGTTAACATTATGGCTTTCTGTAAAGATTACAATGCTAGAACTGCTGATAAACCCGGTTATATCATTCCCGTTGAAATCACTGTCTTTGATGATAAAAGTTTTACTTTCATATTGAAGACTCCACCTGCTTCTGTTCTACTTCTTAAAGCTGCTGGGGTGGAAAAGGGTTCAAAAGACCCCAAGGCACAAAAAGTAGGAAAAGTCACAATTGATCAATTGCGTACAATTGCTTCTGAGAAGTTGCCGGACTTGAATTGTGAGACCATCGAATCAGCTATGAGAATTATAGCAGGCACAGCGGCAAATATGGGAATTGATGTTGATCCTCCTATTCTTGAACCCAAGCAGAAGCAATTGTTGTAA

>MsG0380015971.01.T02

ATGGCTTCCACTCTCATTGGCGCTCCGTCACTTTGTTCTTCCTCTTCTTCAATGTTTTCAACTCATGTCAAATTATCGTTAAAACCCAGTGGAGTCTCAGTTATTCATTCCCTTGAACACAAAAACCCTCTTTCCCTACCCACCACTCATTCTCCAACTCAAAGACGCTTCAAAATTACTGCCATGGCTCCACCCAAACCCGGTGGTGGCAAGGCCAAGAAAGTGGTTGGAATCATAAAGCTGGCTCTTGAAGCCGGGAAGGCGACACCGGCTCCACCGGTTGGACCGGCTCTTGGTTCAAAGGGTGTTAACATTATGGCTTTCTGTAAAGATTACAATGCTAGAACTGCTGATAAACCCGGTTATATCATTCCCGTTGAAATCACTGTCTTTGATGATAAAAGTTTTACTTTCATATTGAAGACTCCACCTGCTTCTGTTCTACTTCTTAAAGCTGCTGGGGTGGAAAAGGGTTCAAAAGACCCCAAGGCACAAAAAGTAGGAAAAGTCACAATTGATCAATTGCGTACAATTGCTTCTGAGAAGTTGCCGGACTTGAATTGTGAGACCATCGAATCAGCTATGAGAATTATAGCAGGCACAGCGGCAAATATGGGAATTGATGTTGATCCTCCTATTCTTGAACCCAAGCAGAAGCAATTGTTGTAA

Protein sequence

>MsG0380015971.01.T01

MASTLIGAPSLCSSSSSMFSTHVKLSLKPSGVSVIHSLEHKNPLSLPTTHSPTQRRFKITAMAPPKPGGGKAKKVVGIIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKPGYIIPVEITVFDDKSFTFILKTPPASVLLLKAAGVEKGSKDPKAQKVGKVTIDQLRTIASEKLPDLNCETIESAMRIIAGTAANMGIDVDPPILEPKQKQLL*

>MsG0380015971.01.T02

MASTLIGAPSLCSSSSSMFSTHVKLSLKPSGVSVIHSLEHKNPLSLPTTHSPTQRRFKITAMAPPKPGGGKAKKVVGIIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKPGYIIPVEITVFDDKSFTFILKTPPASVLLLKAAGVEKGSKDPKAQKVGKVTIDQLRTIASEKLPDLNCETIESAMRIIAGTAANMGIDVDPPILEPKQKQLL*