AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005016.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005016.01.T01 MTR_1g090913 89.968 309 9 2 1 290 1 306 0.0 548
MsG0180005016.01.T01 MTR_3g465120 40.541 222 112 2 86 288 81 301 1.69e-55 181
MsG0180005016.01.T01 MTR_4g015990 37.083 240 127 3 72 288 1 239 4.89e-52 171
MsG0180005016.01.T01 MTR_4g016040 44.886 176 96 1 108 283 60 234 3.88e-49 163
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005016.01.T01 AT5G04490 59.167 240 79 1 70 290 65 304 6.71e-98 290
MsG0180005016.01.T01 AT5G04490 60.674 178 51 1 70 228 65 242 2.18e-72 223
MsG0180005016.01.T01 AT5G58560 42.541 181 103 1 108 288 128 307 2.85e-51 171

Find 74 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCATAGCAATGCTTATATT+TGG 0.177370 1:+85700328 MsG0180005016.01.T01:CDS
AATGCTTATATTTGGATTCT+TGG 0.197393 1:+85700336 MsG0180005016.01.T01:CDS
TTTGGATTCTTGGTTTCAAT+TGG 0.256377 1:+85700346 MsG0180005016.01.T01:CDS
GGTGCCACTGTTGGTGTTCT+TGG 0.284632 1:+85699227 MsG0180005016.01.T01:CDS
GATATCATTGGTAGAAGATA+TGG 0.303985 1:+85700262 MsG0180005016.01.T01:CDS
GAGGTGGTGGTGGTTGTTGC+CGG 0.304454 1:-85699053 None:intergenic
TTCTGTTCCACTAGTAACTA+TGG 0.342085 1:+85700671 MsG0180005016.01.T01:CDS
TCCAATTGGGGTTGTTGCCT+TGG 0.359168 1:+85700018 MsG0180005016.01.T01:CDS
TGTTAAGTGCTATTGTGTTC+TGG 0.376561 1:+85699987 MsG0180005016.01.T01:CDS
TTACAAATCTTTCATCTAAA+CGG 0.377409 1:-85699157 None:intergenic
TTCTGGCGTGAATCTCCAAT+TGG 0.390436 1:+85700004 MsG0180005016.01.T01:CDS
GTGGGTTTGTTCCAAGGAAA+AGG 0.392595 1:-85699080 None:intergenic
TTGGATTCTTGGTTTCAATT+GGG 0.404183 1:+85700347 MsG0180005016.01.T01:CDS
ATTAGATCTTGAGCATTTGC+AGG 0.415465 1:-85699194 None:intergenic
CTCTCCAAAGTTATTAATGA+TGG 0.428032 1:-85700713 None:intergenic
TTTGGTGAATGGTCTCTCCT+TGG 0.432501 1:+85699782 MsG0180005016.01.T01:CDS
TCTGGCGTGAATCTCCAATT+GGG 0.433764 1:+85700005 MsG0180005016.01.T01:CDS
CTCCGTGCACCGCCGTTCAC+CGG 0.435055 1:+85699034 MsG0180005016.01.T01:CDS
AGGAAAAGGGTTGGAGGTGG+TGG 0.441202 1:-85699066 None:intergenic
TCATCGACCACCTCAGTAAT+GGG 0.442023 1:-85700642 None:intergenic
CTCTCCTTGGTTACTGATCA+AGG 0.451114 1:+85699795 MsG0180005016.01.T01:CDS
AAAAGGGTTGGAGGTGGTGG+TGG 0.452390 1:-85699063 None:intergenic
GCCAAGGCAACAACCCCAAT+TGG 0.456276 1:-85700019 None:intergenic
CGGCGGTGCACGGAGGAGAA+TGG 0.465256 1:-85699026 None:intergenic
CAGCAAAGTAACGAGCTTCA+AGG 0.476437 1:-85699728 None:intergenic
TTAATATCCCAACATAATAG+AGG 0.477271 1:-85699964 None:intergenic
GACAGTGTCGTTTGTTGCTG+TGG 0.478752 1:-85699099 None:intergenic
GAGGTCCCCTCTATTATGTT+GGG 0.482902 1:+85699957 MsG0180005016.01.T01:CDS
TGGTGGTTGTTGCCGGTGAA+CGG 0.484199 1:-85699046 None:intergenic
GACATGTGCAGTTTGATTTG+TGG 0.485754 1:+85700562 MsG0180005016.01.T01:CDS
CTGTACTACTATTCAGCTCT+AGG 0.488201 1:+85700540 MsG0180005016.01.T01:CDS
CTAGGTGTGGCTGATATCAT+TGG 0.492948 1:+85700250 MsG0180005016.01.T01:intron
TGCCGGTGAACGGCGGTGCA+CGG 0.494482 1:-85699036 None:intergenic
GTTGCTGTGGGTTTGTTCCA+AGG 0.496514 1:-85699086 None:intergenic
GTCATCGACCACCTCAGTAA+TGG 0.501122 1:-85700643 None:intergenic
GCCACTGTTGGTGTTCTTGG+CGG 0.506473 1:+85699230 MsG0180005016.01.T01:CDS
ACAGTGTCGTTTGTTGCTGT+GGG 0.509357 1:-85699098 None:intergenic
TGGGTTTGTTCCAAGGAAAA+GGG 0.511191 1:-85699079 None:intergenic
AAACATCATTGATCAAGTAA+TGG 0.518588 1:+85699295 MsG0180005016.01.T01:CDS
AGCAAAGTAACGAGCTTCAA+GGG 0.523609 1:-85699727 None:intergenic
AGAGGTCCCCTCTATTATGT+TGG 0.534169 1:+85699956 MsG0180005016.01.T01:CDS
TTTGTTCCAAGGAAAAGGGT+TGG 0.535640 1:-85699075 None:intergenic
GTTCCAAGGAAAAGGGTTGG+AGG 0.535671 1:-85699072 None:intergenic
AAAGACACAAAAGCAACTCT+TGG 0.543465 1:-85700594 None:intergenic
CCAAGGAAAAGGGTTGGAGG+TGG 0.543991 1:-85699069 None:intergenic
ATATCATTGGTAGAAGATAT+GGG 0.547601 1:+85700263 MsG0180005016.01.T01:CDS
ATCAAATCTGTGACTAGGAA+AGG 0.549956 1:+85699822 MsG0180005016.01.T01:CDS
CACAATGTTGGTGCCACTGT+TGG 0.565061 1:+85699218 MsG0180005016.01.T01:CDS
GCCTTGGCAATGATGTGTGG+AGG 0.567586 1:+85700034 MsG0180005016.01.T01:CDS
CCTTGGCAATGATGTGTGGA+GGG 0.571638 1:+85700035 MsG0180005016.01.T01:CDS
TAATATCCCAACATAATAGA+GGG 0.574859 1:-85699963 None:intergenic
GCAATGATGTGTGGAGGGGA+TGG 0.575045 1:+85700040 MsG0180005016.01.T01:CDS
TTAGATCTTGAGCATTTGCA+GGG 0.579429 1:-85699193 None:intergenic
CGACCACCTCAGTAATGGGT+AGG 0.581372 1:-85700638 None:intergenic
CCCTACAGAGAATTGCTAAG+AGG 0.586996 1:+85699938 MsG0180005016.01.T01:intron
GTCACTGCCATAGTTACTAG+TGG 0.589305 1:-85700678 None:intergenic
GGAGAATGGAAAGAGGTGAG+AGG 0.590292 1:-85699012 None:intergenic
GTTGCCTTGGCAATGATGTG+TGG 0.591787 1:+85700031 MsG0180005016.01.T01:CDS
CCCTCCACACATCATTGCCA+AGG 0.594888 1:-85700035 None:intergenic
CAAGATCTAATCCACAATGT+TGG 0.596614 1:+85699206 MsG0180005016.01.T01:CDS
CAACAGTGGCACCAACATTG+TGG 0.602793 1:-85699217 None:intergenic
GCACGGAGGAGAATGGAAAG+AGG 0.609876 1:-85699019 None:intergenic
GTCCCTACCCATTACTGAGG+TGG 0.610171 1:+85700635 MsG0180005016.01.T01:CDS
GACTCATCAAATCTGTGACT+AGG 0.615495 1:+85699817 MsG0180005016.01.T01:CDS
GACCACCTCAGTAATGGGTA+GGG 0.617402 1:-85700637 None:intergenic
GCCGCCAAGAACACCAACAG+TGG 0.621865 1:-85699231 None:intergenic
CTTGGCAATGATGTGTGGAG+GGG 0.628426 1:+85700036 MsG0180005016.01.T01:CDS
CGGACACTACGATGTACTGA+AGG 0.643227 1:-85699137 None:intergenic
CTGGCGTGAATCTCCAATTG+GGG 0.652571 1:+85700006 MsG0180005016.01.T01:CDS
GGAGTCCCTACCCATTACTG+AGG 0.664036 1:+85700632 MsG0180005016.01.T01:CDS
GAGTCCTTGATCAGTAACCA+AGG 0.675558 1:-85699799 None:intergenic
CGGTGAACGGCGGTGCACGG+AGG 0.687859 1:-85699033 None:intergenic
TGGTTGTTGCCGGTGAACGG+CGG 0.696223 1:-85699043 None:intergenic
AATATCCCAACATAATAGAG+GGG 0.697645 1:-85699962 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGTCTTTATTCATTTTTT+TGG + Chr1:85699864-85699883 MsG0180005016.01.T01:intron 15.0%
!! ATTTATCTAAATCACAGAAA+TGG - Chr1:85699601-85699620 None:intergenic 20.0%
!! TTACAAATCTTTCATCTAAA+CGG - Chr1:85699160-85699179 None:intergenic 20.0%
!! TTCCTTATAAGGAAAATTTA+AGG + Chr1:85699653-85699672 MsG0180005016.01.T01:intron 20.0%
!! TTTATCTAAATCACAGAAAT+GGG - Chr1:85699600-85699619 None:intergenic 20.0%
!!! GTCAATTCATAAATTTTTCT+TGG - Chr1:85699391-85699410 None:intergenic 20.0%
!!! TTCATTTTTTTGGCATTATT+TGG + Chr1:85699874-85699893 MsG0180005016.01.T01:intron 20.0%
! AAACATCATTGATCAAGTAA+TGG + Chr1:85699295-85699314 MsG0180005016.01.T01:CDS 25.0%
! AAAGCAATCCTGATAATATA+TGG - Chr1:85699548-85699567 None:intergenic 25.0%
! AACTCAGGTTTAAGAAATAA+AGG - Chr1:85700089-85700108 None:intergenic 25.0%
! AAGACATTTGATACTTACTT+TGG - Chr1:85699852-85699871 None:intergenic 25.0%
! AATGCTTATATTTGGATTCT+TGG + Chr1:85700336-85700355 MsG0180005016.01.T01:CDS 25.0%
! ATATCATTGGTAGAAGATAT+GGG + Chr1:85700263-85700282 MsG0180005016.01.T01:CDS 25.0%
! GAACCAAAACAAGTAAAAAA+TGG - Chr1:85699420-85699439 None:intergenic 25.0%
! TAATATCCCAACATAATAGA+GGG - Chr1:85699966-85699985 None:intergenic 25.0%
! TTAATATCCCAACATAATAG+AGG - Chr1:85699967-85699986 None:intergenic 25.0%
! TTAATCAACCATGAATTTGA+TGG + Chr1:85700224-85700243 MsG0180005016.01.T01:intron 25.0%
! TTACAACCAAAAAAAGAGTT+GGG + Chr1:85700300-85700319 MsG0180005016.01.T01:CDS 25.0%
! TTATCTAAATCACAGAAATG+GGG - Chr1:85699599-85699618 None:intergenic 25.0%
!! ATAAGGAAAATTTAAGGCAT+TGG + Chr1:85699659-85699678 MsG0180005016.01.T01:intron 25.0%
!! TCTTTGCTTTATTCCTTATA+AGG + Chr1:85699642-85699661 MsG0180005016.01.T01:intron 25.0%
!! TGCCTTAAATTTTCCTTATA+AGG - Chr1:85699658-85699677 None:intergenic 25.0%
!!! AAAAAGTACTGTTGAAAAAG+TGG - Chr1:85700401-85700420 None:intergenic 25.0%
!!! AATGTTTTGGTGTTAATGTT+AGG + Chr1:85699695-85699714 MsG0180005016.01.T01:intron 25.0%
!!! ATTGCTTTGTTTGAATGTTT+TGG + Chr1:85699682-85699701 MsG0180005016.01.T01:intron 25.0%
!!! GATCCATTTTTTACTTGTTT+TGG + Chr1:85699414-85699433 MsG0180005016.01.T01:intron 25.0%
AAACTGGTCCATATATTATC+AGG + Chr1:85699537-85699556 MsG0180005016.01.T01:intron 30.0%
AATATCCCAACATAATAGAG+GGG - Chr1:85699965-85699984 None:intergenic 30.0%
AGCATAGCAATGCTTATATT+TGG + Chr1:85700328-85700347 MsG0180005016.01.T01:CDS 30.0%
AGTGTGAAAATCTATCTACT+TGG - Chr1:85700489-85700508 None:intergenic 30.0%
CTTACAACCAAAAAAAGAGT+TGG + Chr1:85700299-85700318 MsG0180005016.01.T01:CDS 30.0%
GATATCATTGGTAGAAGATA+TGG + Chr1:85700262-85700281 MsG0180005016.01.T01:CDS 30.0%
TCATTGATCAAGTAATGGTT+TGG + Chr1:85699300-85699319 MsG0180005016.01.T01:intron 30.0%
TTGGATTCTTGGTTTCAATT+GGG + Chr1:85700347-85700366 MsG0180005016.01.T01:CDS 30.0%
TTTGGATTCTTGGTTTCAAT+TGG + Chr1:85700346-85700365 MsG0180005016.01.T01:CDS 30.0%
!! ATCTGTGTTTGCTTTGAAAT+TGG + Chr1:85699483-85699502 MsG0180005016.01.T01:intron 30.0%
!! TTTTTGGCATTATTTGGTCA+TGG + Chr1:85699880-85699899 MsG0180005016.01.T01:intron 30.0%
!!! ATTATCAGGATTGCTTTTTC+TGG + Chr1:85699551-85699570 MsG0180005016.01.T01:intron 30.0%
!!! CAACTCTTTTTTTGGTTGTA+AGG - Chr1:85700301-85700320 None:intergenic 30.0%
!!! TGTGAATTTTTTGAGGCTTT+TGG + Chr1:85699764-85699783 MsG0180005016.01.T01:CDS 30.0%
!!! TTCCTCTTGTGAATTTTTTG+AGG + Chr1:85699757-85699776 MsG0180005016.01.T01:CDS 30.0%
AAAGACACAAAAGCAACTCT+TGG - Chr1:85700597-85700616 None:intergenic 35.0%
AGCCTCAAAAAATTCACAAG+AGG - Chr1:85699762-85699781 None:intergenic 35.0%
ATCAAATCTGTGACTAGGAA+AGG + Chr1:85699822-85699841 MsG0180005016.01.T01:CDS 35.0%
ATTAGATCTTGAGCATTTGC+AGG - Chr1:85699197-85699216 None:intergenic 35.0%
CAAGATCTAATCCACAATGT+TGG + Chr1:85699206-85699225 MsG0180005016.01.T01:CDS 35.0%
CCTAGTAACCATCAAATTCA+TGG - Chr1:85700235-85700254 None:intergenic 35.0%
TAGGGTATGTAAACAGTACA+AGG - Chr1:85699923-85699942 None:intergenic 35.0%
TGCATGCAAATTGCAAAGTA+AGG - Chr1:85699352-85699371 None:intergenic 35.0%
TGCTGATATTTATTGCATGC+AGG + Chr1:85700514-85700533 MsG0180005016.01.T01:intron 35.0%
TTAGATCTTGAGCATTTGCA+GGG - Chr1:85699196-85699215 None:intergenic 35.0%
TTCTGTTCCACTAGTAACTA+TGG + Chr1:85700671-85700690 MsG0180005016.01.T01:CDS 35.0%
! AATTTGATGGTTACTAGGTG+TGG + Chr1:85700237-85700256 MsG0180005016.01.T01:intron 35.0%
! CCATGAATTTGATGGTTACT+AGG + Chr1:85700232-85700251 MsG0180005016.01.T01:intron 35.0%
! TGTTAAGTGCTATTGTGTTC+TGG + Chr1:85699987-85700006 MsG0180005016.01.T01:CDS 35.0%
!!! AGTTGCTTTTGTGTCTTTTG+TGG + Chr1:85700599-85700618 MsG0180005016.01.T01:CDS 35.0%
!!! GATTGCTTTTTCTGGTTTCA+TGG + Chr1:85699559-85699578 MsG0180005016.01.T01:intron 35.0%
!!! TTTTTGAGGCTTTTGGTGAA+TGG + Chr1:85699771-85699790 MsG0180005016.01.T01:CDS 35.0%
AACCAAAAAAAGAGTTGGGC+TGG + Chr1:85700304-85700323 MsG0180005016.01.T01:CDS 40.0%
ACCTCTTAGCAATTCTCTGT+AGG - Chr1:85699942-85699961 None:intergenic 40.0%
ACTTACTTCACGTCAAACTC+AGG - Chr1:85700104-85700123 None:intergenic 40.0%
AGCAAAGTAACGAGCTTCAA+GGG - Chr1:85699730-85699749 None:intergenic 40.0%
CCTCTTAGCAATTCTCTGTA+GGG - Chr1:85699941-85699960 None:intergenic 40.0%
CTGTACTACTATTCAGCTCT+AGG + Chr1:85700540-85700559 MsG0180005016.01.T01:CDS 40.0%
GACTCATCAAATCTGTGACT+AGG + Chr1:85699817-85699836 MsG0180005016.01.T01:CDS 40.0%
TGGCATTATTTGGTCATGGA+AGG + Chr1:85699884-85699903 MsG0180005016.01.T01:intron 40.0%
TTTGTTCCAAGGAAAAGGGT+TGG - Chr1:85699078-85699097 None:intergenic 40.0%
! GAAATGGGGTACCTGAAAAT+TGG - Chr1:85699585-85699604 None:intergenic 40.0%
! TGGGTTTGTTCCAAGGAAAA+GGG - Chr1:85699082-85699101 None:intergenic 40.0%
! TGGTTTCATGGCCAATTTTC+AGG + Chr1:85699571-85699590 MsG0180005016.01.T01:intron 40.0%
!! AAATTGGTGTCACATGGTGA+TGG + Chr1:85699499-85699518 MsG0180005016.01.T01:intron 40.0%
!! GACATGTGCAGTTTGATTTG+TGG + Chr1:85700562-85700581 MsG0180005016.01.T01:CDS 40.0%
!! GCTTTGAAATTGGTGTCACA+TGG + Chr1:85699493-85699512 MsG0180005016.01.T01:intron 40.0%
!!! TACCAGCCCAACTCTTTTTT+TGG - Chr1:85700309-85700328 None:intergenic 40.0%
AGAGGTCCCCTCTATTATGT+TGG + Chr1:85699956-85699975 MsG0180005016.01.T01:CDS 45.0%
CAGCAAAGTAACGAGCTTCA+AGG - Chr1:85699731-85699750 None:intergenic 45.0%
CCCTACAGAGAATTGCTAAG+AGG + Chr1:85699938-85699957 MsG0180005016.01.T01:intron 45.0%
CTAGGTGTGGCTGATATCAT+TGG + Chr1:85700250-85700269 MsG0180005016.01.T01:intron 45.0%
CTCTCCTTGGTTACTGATCA+AGG + Chr1:85699795-85699814 MsG0180005016.01.T01:CDS 45.0%
GAGGTCCCCTCTATTATGTT+GGG + Chr1:85699957-85699976 MsG0180005016.01.T01:CDS 45.0%
GAGTCCTTGATCAGTAACCA+AGG - Chr1:85699802-85699821 None:intergenic 45.0%
GTCACTGCCATAGTTACTAG+TGG - Chr1:85700681-85700700 None:intergenic 45.0%
TCATCGACCACCTCAGTAAT+GGG - Chr1:85700645-85700664 None:intergenic 45.0%
TCTGGCGTGAATCTCCAATT+GGG + Chr1:85700005-85700024 MsG0180005016.01.T01:CDS 45.0%
TTCTGGCGTGAATCTCCAAT+TGG + Chr1:85700004-85700023 MsG0180005016.01.T01:CDS 45.0%
TTTGGTGAATGGTCTCTCCT+TGG + Chr1:85699782-85699801 MsG0180005016.01.T01:CDS 45.0%
! GTGGGTTTGTTCCAAGGAAA+AGG - Chr1:85699083-85699102 None:intergenic 45.0%
! TGTGTCTTTTGTGGCAACAG+TGG + Chr1:85700608-85700627 MsG0180005016.01.T01:CDS 45.0%
!! ACAGTGTCGTTTGTTGCTGT+GGG - Chr1:85699101-85699120 None:intergenic 45.0%
!!! TTTGTTTATTTTTTTTTTAA+TGG + Chr1:85699456-85699475 MsG0180005016.01.T01:intron 5.0%
CAACAGTGGCACCAACATTG+TGG - Chr1:85699220-85699239 None:intergenic 50.0%
CCTTGGCAATGATGTGTGGA+GGG + Chr1:85700035-85700054 MsG0180005016.01.T01:CDS 50.0%
CGGACACTACGATGTACTGA+AGG - Chr1:85699140-85699159 None:intergenic 50.0%
CTGGCGTGAATCTCCAATTG+GGG + Chr1:85700006-85700025 MsG0180005016.01.T01:CDS 50.0%
CTTGGCAATGATGTGTGGAG+GGG + Chr1:85700036-85700055 MsG0180005016.01.T01:CDS 50.0%
GGAGAATGGAAAGAGGTGAG+AGG - Chr1:85699015-85699034 None:intergenic 50.0%
GTCATCGACCACCTCAGTAA+TGG - Chr1:85700646-85700665 None:intergenic 50.0%
GTTCCAAGGAAAAGGGTTGG+AGG - Chr1:85699075-85699094 None:intergenic 50.0%
GTTGCCTTGGCAATGATGTG+TGG + Chr1:85700031-85700050 MsG0180005016.01.T01:CDS 50.0%
TCCAATTGGGGTTGTTGCCT+TGG + Chr1:85700018-85700037 MsG0180005016.01.T01:CDS 50.0%
! GTCTTTTGTGGCAACAGTGG+TGG + Chr1:85700611-85700630 MsG0180005016.01.T01:CDS 50.0%
! GTTGCTGTGGGTTTGTTCCA+AGG - Chr1:85699089-85699108 None:intergenic 50.0%
!! CACAATGTTGGTGCCACTGT+TGG + Chr1:85699218-85699237 MsG0180005016.01.T01:CDS 50.0%
!! GACAGTGTCGTTTGTTGCTG+TGG - Chr1:85699102-85699121 None:intergenic 50.0%
!! GACCACCTCAGTAATGGGTA+GGG - Chr1:85700640-85700659 None:intergenic 50.0%
AGGAAAAGGGTTGGAGGTGG+TGG - Chr1:85699069-85699088 None:intergenic 55.0%
CCAAGGAAAAGGGTTGGAGG+TGG - Chr1:85699072-85699091 None:intergenic 55.0%
CCCTCCACACATCATTGCCA+AGG - Chr1:85700038-85700057 None:intergenic 55.0%
GCAATGATGTGTGGAGGGGA+TGG + Chr1:85700040-85700059 MsG0180005016.01.T01:CDS 55.0%
GCACGGAGGAGAATGGAAAG+AGG - Chr1:85699022-85699041 None:intergenic 55.0%
GCAGGGTCTGAGCAGAAAAC+TGG + Chr1:85699521-85699540 MsG0180005016.01.T01:intron 55.0%
GCCAAGGCAACAACCCCAAT+TGG - Chr1:85700022-85700041 None:intergenic 55.0%
GCCTTGGCAATGATGTGTGG+AGG + Chr1:85700034-85700053 MsG0180005016.01.T01:CDS 55.0%
GGAGTCCCTACCCATTACTG+AGG + Chr1:85700632-85700651 MsG0180005016.01.T01:CDS 55.0%
GTCCCTACCCATTACTGAGG+TGG + Chr1:85700635-85700654 MsG0180005016.01.T01:CDS 55.0%
TGGTGGTTGTTGCCGGTGAA+CGG - Chr1:85699049-85699068 None:intergenic 55.0%
! AAAAGGGTTGGAGGTGGTGG+TGG - Chr1:85699066-85699085 None:intergenic 55.0%
! CCACCTCCAACCCTTTTCCT+TGG + Chr1:85699069-85699088 MsG0180005016.01.T01:CDS 55.0%
! GCCACTGTTGGTGTTCTTGG+CGG + Chr1:85699230-85699249 MsG0180005016.01.T01:CDS 55.0%
!! CGACCACCTCAGTAATGGGT+AGG - Chr1:85700641-85700660 None:intergenic 55.0%
!! GGTGCCACTGTTGGTGTTCT+TGG + Chr1:85699227-85699246 MsG0180005016.01.T01:CDS 55.0%
!! GGTGTCACATGGTGATGGCA+GGG + Chr1:85699504-85699523 MsG0180005016.01.T01:intron 55.0%
!! TGGTGTCACATGGTGATGGC+AGG + Chr1:85699503-85699522 MsG0180005016.01.T01:intron 55.0%
GCCGCCAAGAACACCAACAG+TGG - Chr1:85699234-85699253 None:intergenic 60.0%
TGGTTGTTGCCGGTGAACGG+CGG - Chr1:85699046-85699065 None:intergenic 60.0%
!! GAGGTGGTGGTGGTTGTTGC+CGG - Chr1:85699056-85699075 None:intergenic 60.0%
CGGCGGTGCACGGAGGAGAA+TGG - Chr1:85699029-85699048 None:intergenic 70.0%
CTCCGTGCACCGCCGTTCAC+CGG + Chr1:85699034-85699053 MsG0180005016.01.T01:CDS 70.0%
TGCCGGTGAACGGCGGTGCA+CGG - Chr1:85699039-85699058 None:intergenic 70.0%
CGGTGAACGGCGGTGCACGG+AGG - Chr1:85699036-85699055 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 85698999 85700722 85698999 ID=MsG0180005016.01;Name=MsG0180005016.01
Chr1 mRNA 85698999 85700722 85698999 ID=MsG0180005016.01.T01;Parent=MsG0180005016.01;Name=MsG0180005016.01.T01;_AED=0.31;_eAED=0.32;_QI=0|0|0|1|1|1|5|0|290
Chr1 exon 85698999 85699316 85698999 ID=MsG0180005016.01.T01:exon:9689;Parent=MsG0180005016.01.T01
Chr1 exon 85699717 85699853 85699717 ID=MsG0180005016.01.T01:exon:9690;Parent=MsG0180005016.01.T01
Chr1 exon 85699946 85700061 85699946 ID=MsG0180005016.01.T01:exon:9691;Parent=MsG0180005016.01.T01
Chr1 exon 85700254 85700368 85700254 ID=MsG0180005016.01.T01:exon:9692;Parent=MsG0180005016.01.T01
Chr1 exon 85700536 85700722 85700536 ID=MsG0180005016.01.T01:exon:9693;Parent=MsG0180005016.01.T01
Chr1 CDS 85698999 85699316 85698999 ID=MsG0180005016.01.T01:cds;Parent=MsG0180005016.01.T01
Chr1 CDS 85699717 85699853 85699717 ID=MsG0180005016.01.T01:cds;Parent=MsG0180005016.01.T01
Chr1 CDS 85699946 85700061 85699946 ID=MsG0180005016.01.T01:cds;Parent=MsG0180005016.01.T01
Chr1 CDS 85700254 85700368 85700254 ID=MsG0180005016.01.T01:cds;Parent=MsG0180005016.01.T01
Chr1 CDS 85700536 85700722 85700536 ID=MsG0180005016.01.T01:cds;Parent=MsG0180005016.01.T01
Gene Sequence

>MsG0180005016.01.T01

ATGACTCTCTTATCCTCTCACCTCTTTCCATTCTCCTCCGTGCACCGCCGTTCACCGGCAACAACCACCACCACCTCCAACCCTTTTCCTTGGAACAAACCCACAGCAACAAACGACACTGTCAAGTTTTTGTATTCTCCTTCAGTACATCGTAGTGTCCGTTTAGATGAAAGATTTGTAACAAGATTTATTGTCCCTGCAAATGCTCAAGATCTAATCCACAATGTTGGTGCCACTGTTGGTGTTCTTGGCGGCGCTTATGCTCTTGTTTTTTCTTTTGATGATCTAACTAGAAGAAACATCATTGATCAAGTAATGGATAGCAACTCCCTTGAAGCTCGTTACTTTGCTGCTTTTGTTCCTCTTGTGAATTTTTTGAGGCTTTTGGTGAATGGTCTCTCCTTGGTTACTGATCAAGGACTCATCAAATCTGTGACTAGGAAAGGAGATCCAAAAGAATTGCTAAGAGGTCCCCTCTATTATGTTGGGATATTAATGTTAAGTGCTATTGTGTTCTGGCGTGAATCTCCAATTGGGGTTGTTGCCTTGGCAATGATGTGTGGAGGGGATGGTGTGGCTGATATCATTGGTAGAAGATATGGGTCAATGAAGATTCCTTACAACCAAAAAAAGAGTTGGGCTGGTAGCATAGCAATGCTTATATTTGGATTCTTGGTTTCAATTGGGATGCTGTACTACTATTCAGCTCTAGGACATGTGCAGTTTGATTTGTGGAACATTGTGCCAAGAGTTGCTTTTGTGTCTTTTGTGGCAACAGTGGTGGAGTCCCTACCCATTACTGAGGTGGTCGATGACAACATTTCTGTTCCACTAGTAACTATGGCAGTGACTTTTTTAACTTTCCATCATTAA

Protein sequence

>MsG0180005016.01.T01

MTLLSSHLFPFSSVHRRSPATTTTTSNPFPWNKPTATNDTVKFLYSPSVHRSVRLDERFVTRFIVPANAQDLIHNVGATVGVLGGAYALVFSFDDLTRRNIIDQVMDSNSLEARYFAAFVPLVNFLRLLVNGLSLVTDQGLIKSVTRKGDPKELLRGPLYYVGILMLSAIVFWRESPIGVVALAMMCGGDGVADIIGRRYGSMKIPYNQKKSWAGSIAMLIFGFLVSIGMLYYYSALGHVQFDLWNIVPRVAFVSFVATVVESLPITEVVDDNISVPLVTMAVTFLTFHH*