AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034909.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034909.01.T01 MTR_6g077820 99.690 323 1 0 1 323 1 323 0.0 653
MsG0680034909.01.T01 MTR_2g034090 32.710 214 132 3 116 318 104 316 3.14e-22 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034909.01.T01 AT5G23250 85.670 321 41 2 5 323 24 341 0.0 557
MsG0680034909.01.T01 AT5G08300 87.296 307 37 1 19 323 40 346 0.0 553
MsG0680034909.01.T01 AT5G23250 87.273 275 30 2 5 277 24 295 2.27e-174 485
MsG0680034909.01.T01 AT5G23250 85.590 229 28 2 5 231 24 249 1.03e-140 398
MsG0680034909.01.T01 AT3G06650 31.776 214 134 3 116 318 104 316 1.81e-21 95.5
MsG0680034909.01.T01 AT3G06650 31.776 214 134 3 116 318 104 316 1.81e-21 95.5
MsG0680034909.01.T01 AT5G49460 32.243 214 133 3 116 318 104 316 3.00e-21 94.7
MsG0680034909.01.T01 AT5G49460 32.243 214 133 3 116 318 104 316 3.00e-21 94.7

Find 114 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAACCCCGTGCCTCCTTTC+TGG 0.145644 6:+96523344 None:intergenic
ATTGGAATGTATCGAATTTC+CGG 0.233070 6:+96518897 None:intergenic
AAGCCTGGGGAATGTAAAAT+TGG 0.292157 6:-96521912 MsG0680034909.01.T01:CDS
CAGAAGTGAAAGTGTGATTT+GGG 0.301303 6:+96523290 None:intergenic
AAAGGCGGAACGGAACATTT+AGG 0.302614 6:-96523038 MsG0680034909.01.T01:CDS
CCTGTTGTTGCATTTATTGC+TGG 0.315893 6:-96519820 MsG0680034909.01.T01:CDS
TGGTCCTATCAAACGAGTTT+TGG 0.318800 6:+96521953 None:intergenic
GATCGAATACGGAACGAATA+TGG 0.323206 6:-96523081 MsG0680034909.01.T01:CDS
AAGGCGGAACGGAACATTTA+GGG 0.329459 6:-96523037 MsG0680034909.01.T01:CDS
GTGGAGTCCCCAGCTAAAAT+TGG 0.338774 6:-96519128 MsG0680034909.01.T01:CDS
AACGGAACATTTAGGGCTTC+CGG 0.344291 6:-96523030 MsG0680034909.01.T01:CDS
TCAGAAGTGAAAGTGTGATT+TGG 0.350427 6:+96523289 None:intergenic
GGATGCTGCTGCACTAATTA+AGG 0.351465 6:-96520808 MsG0680034909.01.T01:intron
ATTGGAATTGTTTCTCGTTC+TGG 0.374631 6:-96521855 MsG0680034909.01.T01:CDS
TGATTCCCGTCGATAGTAAT+GGG 0.379014 6:-96518992 MsG0680034909.01.T01:three_prime_UTR
AACAAAATTTGTTCCATTGA+AGG 0.387471 6:+96521069 None:intergenic
TTCTGTTGCGGAAGCGAAAA+CGG 0.387540 6:-96523000 MsG0680034909.01.T01:CDS
TGAGAAGTTGCGGCGGTTGT+TGG 0.395891 6:+96523199 None:intergenic
CAAACAACTGCTGTTGGCCT+TGG 0.397173 6:-96521124 MsG0680034909.01.T01:CDS
TGAGCTCCAGCTTGTGGCGC+TGG 0.399183 6:-96518874 MsG0680034909.01.T01:three_prime_UTR
TGTTCCGTTCCGCCTTTCTT+CGG 0.405095 6:+96523044 None:intergenic
TGATTGCCTTACAAAGTTCC+TGG 0.406650 6:-96521047 MsG0680034909.01.T01:CDS
TCCGTATTCGATCGCTTGTT+CGG 0.408534 6:+96523091 None:intergenic
AGGGATTCCTCAACATGATA+TGG 0.409706 6:-96522871 MsG0680034909.01.T01:intron
TGCCCTGGTATCATCAAGCC+TGG 0.420935 6:-96521927 MsG0680034909.01.T01:CDS
CAGTCCAAAACTCGTTTGAT+AGG 0.424087 6:-96521957 MsG0680034909.01.T01:CDS
ACCGAACAAGCGATCGAATA+CGG 0.427541 6:-96523092 MsG0680034909.01.T01:CDS
AAGACAAAATCAGCACCCTT+AGG 0.428915 6:-96519169 MsG0680034909.01.T01:CDS
CAAGGCCAACAGCAGTTGTT+TGG 0.431303 6:+96521125 None:intergenic
ACAAAATTTGTTCCATTGAA+GGG 0.432767 6:+96521070 None:intergenic
ATCAGCACCCTTAGGGAAGC+TGG 0.437867 6:-96519161 MsG0680034909.01.T01:CDS
GCCACAAGCTGGAGCTCAAT+TGG 0.438732 6:+96518879 None:intergenic
CAATCCACATGTGTGGGTAT+TGG 0.449661 6:-96521100 MsG0680034909.01.T01:CDS
AGCTATTGTGTCGGGTGGCA+AGG 0.452187 6:-96519201 MsG0680034909.01.T01:CDS
ATCATTCTCATAGGAGAGAT+AGG 0.456254 6:-96520846 MsG0680034909.01.T01:CDS
GCGTGTCCCATACGACGGCC+AGG 0.457054 6:+96519784 None:intergenic
TTGATGATACCAGGGCAGTT+TGG 0.457598 6:+96521933 None:intergenic
ATTCACAAACCTGGCCGCAT+TGG 0.464556 6:-96521873 MsG0680034909.01.T01:CDS
AGGCTTAGTGCAATAGTTTG+AGG 0.468890 6:-96519075 MsG0680034909.01.T01:exon
TTCTTGTGCAGCTATTGTGT+CGG 0.470695 6:-96519210 MsG0680034909.01.T01:intron
GTGATCTGTCAAGGAATAAC+CGG 0.473606 6:-96523134 MsG0680034909.01.T01:CDS
CCAGCAATAAATGCAACAAC+AGG 0.479962 6:+96519820 None:intergenic
AATTCAGGCATCATTCTCAT+AGG 0.483888 6:-96520855 MsG0680034909.01.T01:intron
CTTGTTGTTTGTATTACTGA+AGG 0.486594 6:-96522891 MsG0680034909.01.T01:CDS
GATCTGCCAGGAACTTTGTA+AGG 0.488553 6:+96521041 None:intergenic
GGAAGCGGTTGAAGCGGAGT+TGG 0.489889 6:-96522916 MsG0680034909.01.T01:CDS
TACAAACCAGCGCCACAAGC+TGG 0.490129 6:+96518868 None:intergenic
CTGTGACTCCAGCTTCCCTA+AGG 0.494628 6:+96519153 None:intergenic
TCCACATGTGTGGGTATTGG+AGG 0.494871 6:-96521097 MsG0680034909.01.T01:CDS
TGCTGCTGCTATTATGGAAG+CGG 0.495050 6:-96522931 MsG0680034909.01.T01:CDS
TCTTGTGCAGCTATTGTGTC+GGG 0.495233 6:-96519209 MsG0680034909.01.T01:intron
GAAGTTGCGGCGGTTGTTGG+AGG 0.505830 6:+96523202 None:intergenic
TCCCCAGGCTTGATGATACC+AGG 0.506345 6:+96521924 None:intergenic
TTGATTCCCGTCGATAGTAA+TGG 0.512614 6:-96518993 MsG0680034909.01.T01:three_prime_UTR
TGTAAAATTGGAATCATGCC+GGG 0.516403 6:-96521900 MsG0680034909.01.T01:CDS
TCCGCAACAGAATTGAAAAC+CGG 0.517721 6:+96523011 None:intergenic
AGACAAAATCAGCACCCTTA+GGG 0.519396 6:-96519168 MsG0680034909.01.T01:CDS
GAAACAATTCCAATGCGGCC+AGG 0.520843 6:+96521864 None:intergenic
GGCGGTGTTACTCCGAAGAA+AGG 0.520851 6:-96523056 MsG0680034909.01.T01:CDS
GCCCTGGTATCATCAAGCCT+GGG 0.521368 6:-96521926 MsG0680034909.01.T01:CDS
CCGGGTTACATTCACAAACC+TGG 0.522023 6:-96521882 MsG0680034909.01.T01:CDS
TCAGTCCAGAAAGGAGGCAC+GGG 0.523092 6:-96523349 MsG0680034909.01.T01:five_prime_UTR
ATAATAGCAGCAGCAGCAAA+AGG 0.524930 6:+96522939 None:intergenic
TCCAATTGAGCTCCAGCTTG+TGG 0.528907 6:-96518880 MsG0680034909.01.T01:three_prime_UTR
AAAATCCCATTACTATCGAC+GGG 0.531292 6:+96518987 None:intergenic
GCTATTGTGTCGGGTGGCAA+GGG 0.534414 6:-96519200 MsG0680034909.01.T01:CDS
GCAGCAGCAGCAAAAGGAGG+AGG 0.535843 6:+96522945 None:intergenic
ATTGGAGGAGATCCCTTCAA+TGG 0.538848 6:-96521082 MsG0680034909.01.T01:CDS
CTTCTGTCTGAGGATCTGCC+AGG 0.540179 6:+96521029 None:intergenic
ATGTAAAATTGGAATCATGC+CGG 0.544331 6:-96521901 MsG0680034909.01.T01:CDS
CTGCTTGAAAATATCAAACA+TGG 0.547001 6:+96519100 None:intergenic
TTGTTGTTTGTATTACTGAA+GGG 0.552535 6:-96522890 MsG0680034909.01.T01:CDS
GATAGGAGGAACTGCAGAAG+AGG 0.563317 6:-96520829 MsG0680034909.01.T01:CDS
CGTGTCCCATACGACGGCCA+GGG 0.564279 6:+96519785 None:intergenic
GTCAGTCCAGAAAGGAGGCA+CGG 0.568846 6:-96523350 MsG0680034909.01.T01:five_prime_UTR
TTATGAATATTCAGGAAAGC+GGG 0.572053 6:-96519852 MsG0680034909.01.T01:intron
AAAGAATAGTCAGTCCAGAA+AGG 0.575032 6:-96523358 None:intergenic
GTTTACCAAACAACTGCTGT+TGG 0.576485 6:-96521130 MsG0680034909.01.T01:CDS
AGCACACGCGTGATCTGTCA+AGG 0.576838 6:-96523143 MsG0680034909.01.T01:CDS
TTGATAGGACCAAACTGCCC+TGG 0.579975 6:-96521942 MsG0680034909.01.T01:CDS
TCCTCCAATACCCACACATG+TGG 0.588865 6:+96521096 None:intergenic
CCAGGTTTGTGAATGTAACC+CGG 0.592655 6:+96521882 None:intergenic
GGAAGCTGGAGTCACAGTTG+TGG 0.594495 6:-96519147 MsG0680034909.01.T01:CDS
GGCCGTCGTATGGGACACGC+TGG 0.604310 6:-96519781 MsG0680034909.01.T01:CDS
GAATACGGAACGAATATGGT+TGG 0.604847 6:-96523077 MsG0680034909.01.T01:CDS
ATTATGAATATTCAGGAAAG+CGG 0.608390 6:-96519853 MsG0680034909.01.T01:intron
GTCAAAGTACCTTCTGTCTG+AGG 0.618723 6:+96521019 None:intergenic
TACGGAACGAATATGGTTGG+CGG 0.618944 6:-96523074 MsG0680034909.01.T01:CDS
TGTGACTCCAGCTTCCCTAA+GGG 0.620490 6:+96519154 None:intergenic
CCACACATGTGGATTGTCCA+AGG 0.621489 6:+96521107 None:intergenic
TGGAACTTTGACATATGAAG+CGG 0.628520 6:-96521835 MsG0680034909.01.T01:intron
CTGGCAGATCCTCAGACAGA+AGG 0.628902 6:-96521028 MsG0680034909.01.T01:intron
AAGGGGTTGATGAGAAGTTG+CGG 0.630190 6:+96523189 None:intergenic
GAATAGTCAGTCCAGAAAGG+AGG 0.635752 6:-96523355 MsG0680034909.01.T01:five_prime_UTR
CGTCGTATGGGACACGCTGG+AGG 0.636732 6:-96519778 MsG0680034909.01.T01:intron
CCCTGGTATCATCAAGCCTG+GGG 0.640161 6:-96521925 MsG0680034909.01.T01:CDS
TATTATGGAAGCGGTTGAAG+CGG 0.641435 6:-96522922 MsG0680034909.01.T01:CDS
CCCCAGGCTTGATGATACCA+GGG 0.642924 6:+96521925 None:intergenic
TACTCCGAAGAAAGGCGGAA+CGG 0.647259 6:-96523048 MsG0680034909.01.T01:CDS
TGTGCAGCTATTGTGTCGGG+TGG 0.647703 6:-96519206 MsG0680034909.01.T01:intron
ATAGCTACCATATCATGTTG+AGG 0.647786 6:+96522864 None:intergenic
TGGAAAGTCATCGTGTGTGA+AGG 0.655035 6:+96523254 None:intergenic
CCTTGGACAATCCACATGTG+TGG 0.655327 6:-96521107 MsG0680034909.01.T01:CDS
GTGTCCCATACGACGGCCAG+GGG 0.661520 6:+96519786 None:intergenic
CTTGGACAATCCACATGTGT+GGG 0.669108 6:-96521106 MsG0680034909.01.T01:CDS
ATAGCAGCAGCAGCAAAAGG+AGG 0.675861 6:+96522942 None:intergenic
CTCCAGCGTGTCCCATACGA+CGG 0.678361 6:+96519779 None:intergenic
CAGTCCAGAAAGGAGGCACG+GGG 0.691470 6:-96523348 MsG0680034909.01.T01:five_prime_UTR
ATTCTCATAGGAGAGATAGG+AGG 0.694674 6:-96520843 MsG0680034909.01.T01:CDS
GGTGTTACTCCGAAGAAAGG+CGG 0.696917 6:-96523053 MsG0680034909.01.T01:CDS
GGGTTGATGAGAAGTTGCGG+CGG 0.720535 6:+96523192 None:intergenic
TGTCCCATACGACGGCCAGG+GGG 0.720720 6:+96519787 None:intergenic
AACGAGAAACAATTCCAATG+CGG 0.740070 6:+96521859 None:intergenic
TTTGTCGACGAACACCGCGG+GGG 0.744903 6:+96523166 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGATATAATGTAAAAAA+AGG + Chr6:96521917-96521936 None:intergenic 10.0%
!! TAAATATATTATGAATATTC+AGG - Chr6:96522264-96522283 MsG0680034909.01.T01:intron 10.0%
!! TAGCAAATAAAAAAAATTAT+CGG - Chr6:96521531-96521550 MsG0680034909.01.T01:intron 10.0%
!! AAAAAAAATTATCGGAATAA+TGG - Chr6:96521539-96521558 MsG0680034909.01.T01:intron 15.0%
!! AATAGTTATAAACAAATACA+TGG + Chr6:96520971-96520990 None:intergenic 15.0%
!! ATAATTATCTAGTAAATGAA+AGG - Chr6:96519511-96519530 MsG0680034909.01.T01:intron 15.0%
!! GCTATTAATATTTGAAAAAA+TGG - Chr6:96519817-96519836 MsG0680034909.01.T01:CDS 15.0%
!! TAATTATCTAGTAAATGAAA+GGG - Chr6:96519512-96519531 MsG0680034909.01.T01:intron 15.0%
!!! AAGCTGTAAATAATTTTATA+TGG + Chr6:96520827-96520846 None:intergenic 15.0%
!!! CTTGAATTAATTTTATTCTA+AGG + Chr6:96523198-96523217 None:intergenic 15.0%
!!! TGATTTTCTCAAATAATTAA+CGG + Chr6:96519707-96519726 None:intergenic 15.0%
!! AAAGAACTTCAAATTTCAAA+TGG + Chr6:96520913-96520932 None:intergenic 20.0%
!! AACAACAGTAAATTGATAAA+GGG + Chr6:96520768-96520787 None:intergenic 20.0%
!! AATAATTCCTGTATGATTAA+TGG - Chr6:96521214-96521233 MsG0680034909.01.T01:intron 20.0%
!! ACAATTATAGAAAATAGAAG+TGG - Chr6:96519594-96519613 MsG0680034909.01.T01:intron 20.0%
!! ATAATTCCTGTATGATTAAT+GGG - Chr6:96521215-96521234 MsG0680034909.01.T01:intron 20.0%
!! ATATATTTGACCATGTTTAT+GGG - Chr6:96522492-96522511 MsG0680034909.01.T01:intron 20.0%
!! ATTATTATTATTGTCGTCAT+AGG - Chr6:96519625-96519644 MsG0680034909.01.T01:intron 20.0%
!! GTATTTGTTTATAACTATTC+AGG - Chr6:96520972-96520991 MsG0680034909.01.T01:intron 20.0%
!! TAACAACAGTAAATTGATAA+AGG + Chr6:96520769-96520788 None:intergenic 20.0%
!! TATATATTTGACCATGTTTA+TGG - Chr6:96522491-96522510 MsG0680034909.01.T01:intron 20.0%
!! TGTTAAACTAAATTAAGATG+CGG + Chr6:96521796-96521815 None:intergenic 20.0%
!! TTTATATGGATGAATGAAAA+TGG + Chr6:96520813-96520832 None:intergenic 20.0%
!!! AAGTTAAGATTTTTTATGTC+AGG - Chr6:96520118-96520137 MsG0680034909.01.T01:intron 20.0%
!!! AGTGTAATTATTGTTGTTTT+AGG - Chr6:96519357-96519376 MsG0680034909.01.T01:intron 20.0%
!!! GAAAAGACTATTTTGTTAAA+TGG - Chr6:96520333-96520352 MsG0680034909.01.T01:intron 20.0%
!!! GATTTTCTGTTTTATATGAA+AGG - Chr6:96522173-96522192 MsG0680034909.01.T01:intron 20.0%
!!! TTAATTTTATCAAGTCACTT+CGG - Chr6:96523077-96523096 MsG0680034909.01.T01:CDS 20.0%
!!! TTATGGCTTTTGATAAATTT+GGG - Chr6:96519970-96519989 MsG0680034909.01.T01:intron 20.0%
!!! TTCTAAAGTTTTGAAAATGA+TGG - Chr6:96522381-96522400 MsG0680034909.01.T01:intron 20.0%
!!! TTTATGGCTTTTGATAAATT+TGG - Chr6:96519969-96519988 MsG0680034909.01.T01:intron 20.0%
! AAAAATTATCGGAATAATGG+AGG - Chr6:96521542-96521561 MsG0680034909.01.T01:intron 25.0%
! AACATGAACAATAAGTAAGT+AGG + Chr6:96521645-96521664 None:intergenic 25.0%
! AATTAATATCATGATCTAGG+GGG + Chr6:96522880-96522899 None:intergenic 25.0%
! AATTGATCTTGTTCTCATAT+TGG - Chr6:96521933-96521952 MsG0680034909.01.T01:CDS 25.0%
! ACTGTTTGTTTATGTAATTC+AGG - Chr6:96521254-96521273 MsG0680034909.01.T01:intron 25.0%
! ATCATCCTTGATTGTAAAAA+CGG + Chr6:96522585-96522604 None:intergenic 25.0%
! ATGCACAGTTAATAATTAAG+AGG + Chr6:96521344-96521363 None:intergenic 25.0%
! ATTATGAATATTCAGGAAAG+CGG - Chr6:96522271-96522290 MsG0680034909.01.T01:intron 25.0%
! CAATTAATATCATGATCTAG+GGG + Chr6:96522881-96522900 None:intergenic 25.0%
! GCAATTAATATCATGATCTA+GGG + Chr6:96522882-96522901 None:intergenic 25.0%
! TAAATAAGTTTCTGTCTTGT+GGG - Chr6:96521403-96521422 MsG0680034909.01.T01:intron 25.0%
! TATATAAGACAAGTGCTAAT+TGG + Chr6:96522550-96522569 None:intergenic 25.0%
! TCATACAGGAATTATTCATT+AGG + Chr6:96521210-96521229 None:intergenic 25.0%
! TGAATGTAAACCAAATATGT+CGG - Chr6:96519847-96519866 MsG0680034909.01.T01:intron 25.0%
! TGCACAGTTAATAATTAAGA+GGG + Chr6:96521343-96521362 None:intergenic 25.0%
! TTAAATAAGTTTCTGTCTTG+TGG - Chr6:96521402-96521421 MsG0680034909.01.T01:intron 25.0%
! TTTACAATCAAGGATGATAT+GGG - Chr6:96522587-96522606 MsG0680034909.01.T01:intron 25.0%
! TTTCATTACAATGATAGCAA+TGG + Chr6:96520487-96520506 None:intergenic 25.0%
!! AACAAAATTTGTTCCATTGA+AGG + Chr6:96521058-96521077 None:intergenic 25.0%
!! AAGAAGGCAAAGAATAATTT+TGG + Chr6:96521615-96521634 None:intergenic 25.0%
!! ACAAAATTTGTTCCATTGAA+GGG + Chr6:96521057-96521076 None:intergenic 25.0%
!! AGCTTATTTAGAATTAGACT+TGG + Chr6:96522801-96522820 None:intergenic 25.0%
!! AGTTAAATTTAAGGTCTCTT+GGG - Chr6:96522110-96522129 MsG0680034909.01.T01:intron 25.0%
!! GGTGTTTGTATACAAAATTT+TGG - Chr6:96520437-96520456 MsG0680034909.01.T01:intron 25.0%
!! TCTTTTCAACATCAAAAACA+GGG + Chr6:96520320-96520339 None:intergenic 25.0%
!! TGCTTTATTGTTATCACAAA+AGG + Chr6:96522836-96522855 None:intergenic 25.0%
!! TGTAGATGTAAATCTTCTTT+TGG - Chr6:96522078-96522097 MsG0680034909.01.T01:intron 25.0%
!! TTTTACAATCAAGGATGATA+TGG - Chr6:96522586-96522605 MsG0680034909.01.T01:intron 25.0%
!!! ATTGATCTTGAATTTTAGCA+TGG - Chr6:96522454-96522473 MsG0680034909.01.T01:intron 25.0%
!!! TTAATTCAAGATGCTTTTTC+CGG - Chr6:96523208-96523227 MsG0680034909.01.T01:CDS 25.0%
!!! TTGATCTTGAATTTTAGCAT+GGG - Chr6:96522455-96522474 MsG0680034909.01.T01:intron 25.0%
!!! TTGTTGTTTGTATTACTGAA+GGG - Chr6:96519234-96519253 MsG0680034909.01.T01:intron 25.0%
!!! TTTGATATTTTCAAGCAGAA+AGG - Chr6:96523029-96523048 MsG0680034909.01.T01:CDS 25.0%
AAAAATCCCATTACTATCGA+CGG + Chr6:96523141-96523160 None:intergenic 30.0%
AAAAGCCATAAACAAACCAA+AGG + Chr6:96519961-96519980 None:intergenic 30.0%
AAACTAAATTAAGATGCGGA+GGG + Chr6:96521792-96521811 None:intergenic 30.0%
AAATAAGTTTCTGTCTTGTG+GGG - Chr6:96521404-96521423 MsG0680034909.01.T01:intron 30.0%
ACAACTACATGTAAGATTAG+TGG + Chr6:96520640-96520659 None:intergenic 30.0%
AGAGTGAAAACAATTTATGG+GGG - Chr6:96522657-96522676 MsG0680034909.01.T01:intron 30.0%
AGATTTGATGAAATTGCCTA+TGG - Chr6:96519926-96519945 MsG0680034909.01.T01:intron 30.0%
AGGGCAAAAAATAAGAAAGT+TGG + Chr6:96520749-96520768 None:intergenic 30.0%
ATGGTGATATTTATTTGTGC+TGG - Chr6:96522149-96522168 MsG0680034909.01.T01:intron 30.0%
ATGTAAAATTGGAATCATGC+CGG - Chr6:96520223-96520242 MsG0680034909.01.T01:intron 30.0%
ATTACCGTTAATGAGCATTA+TGG + Chr6:96521963-96521982 None:intergenic 30.0%
ATTGGAATGTATCGAATTTC+CGG + Chr6:96523230-96523249 None:intergenic 30.0%
CAAGTGATAATTTCTATGAC+AGG + Chr6:96522407-96522426 None:intergenic 30.0%
CGCAATTAATATCATGATCT+AGG + Chr6:96522883-96522902 None:intergenic 30.0%
CTGCTTGAAAATATCAAACA+TGG + Chr6:96523027-96523046 None:intergenic 30.0%
GAGAGTGAAAACAATTTATG+GGG - Chr6:96522656-96522675 MsG0680034909.01.T01:intron 30.0%
GATTGATCTAGTGAAAGATA+GGG - Chr6:96519392-96519411 MsG0680034909.01.T01:intron 30.0%
GGAGAGTGAAAACAATTTAT+GGG - Chr6:96522655-96522674 MsG0680034909.01.T01:intron 30.0%
GGAGGGACTTAAATAAAAAT+TGG - Chr6:96521475-96521494 MsG0680034909.01.T01:intron 30.0%
GGTAATCAGAACAGAATAAA+AGG + Chr6:96521896-96521915 None:intergenic 30.0%
GTTATCACAAAAGGAATACA+TGG + Chr6:96522827-96522846 None:intergenic 30.0%
TAAACTAAATTAAGATGCGG+AGG + Chr6:96521793-96521812 None:intergenic 30.0%
TAGTCCCTATTGCAAATATA+GGG - Chr6:96521828-96521847 MsG0680034909.01.T01:intron 30.0%
TATATTTGCAATAGGGACTA+AGG + Chr6:96521828-96521847 None:intergenic 30.0%
TATTCAAACACCCATAAACA+TGG + Chr6:96522505-96522524 None:intergenic 30.0%
TCTAGTAAATGAAAGGGTTT+AGG - Chr6:96519518-96519537 MsG0680034909.01.T01:intron 30.0%
TCTCAAATAATTAACGGTGT+CGG + Chr6:96519701-96519720 None:intergenic 30.0%
TGATTGATCTAGTGAAAGAT+AGG - Chr6:96519391-96519410 MsG0680034909.01.T01:intron 30.0%
TGGAGAGTGAAAACAATTTA+TGG - Chr6:96522654-96522673 MsG0680034909.01.T01:intron 30.0%
TGGATGAGGAGTTAAATTTA+AGG - Chr6:96522101-96522120 MsG0680034909.01.T01:intron 30.0%
TGTCATATTATCATCTGTCA+TGG - Chr6:96520690-96520709 MsG0680034909.01.T01:intron 30.0%
TTACAATCAAGGATGATATG+GGG - Chr6:96522588-96522607 MsG0680034909.01.T01:intron 30.0%
TTAGTCCCTATTGCAAATAT+AGG - Chr6:96521827-96521846 MsG0680034909.01.T01:intron 30.0%
TTATGAATATTCAGGAAAGC+GGG - Chr6:96522272-96522291 MsG0680034909.01.T01:intron 30.0%
TTCTCCATAATGCTCATTAA+CGG - Chr6:96521956-96521975 MsG0680034909.01.T01:CDS 30.0%
! AACTCTAGCTAGTTCATTTT+TGG - Chr6:96520061-96520080 MsG0680034909.01.T01:intron 30.0%
! AGATGTAAATCTTCTTTTGG+TGG - Chr6:96522081-96522100 MsG0680034909.01.T01:intron 30.0%
! AGTTGTGTATCATGTTTCTA+TGG - Chr6:96521442-96521461 MsG0680034909.01.T01:intron 30.0%
! ATGTTTCTATGGTTATGACT+GGG - Chr6:96521453-96521472 MsG0680034909.01.T01:intron 30.0%
! ATTTTGTTAAATGGAAGCCA+TGG - Chr6:96520342-96520361 MsG0680034909.01.T01:intron 30.0%
! GAGTTAAATTTAAGGTCTCT+TGG - Chr6:96522109-96522128 MsG0680034909.01.T01:intron 30.0%
! GCTTTTTGTGATGTGAAAAA+CGG - Chr6:96519542-96519561 MsG0680034909.01.T01:intron 30.0%
! GTCTTTTCAACATCAAAAAC+AGG + Chr6:96520321-96520340 None:intergenic 30.0%
!! ATAAGCCTTTGGTTTGTTTA+TGG - Chr6:96519953-96519972 MsG0680034909.01.T01:intron 30.0%
!! ATAATTTTGGTCTGAATCAG+AGG + Chr6:96521602-96521621 None:intergenic 30.0%
!! CTTGTTGTTTGTATTACTGA+AGG - Chr6:96519233-96519252 MsG0680034909.01.T01:intron 30.0%
!! TGTGATTTGGGTTTGTTTTT+AGG + Chr6:96518825-96518844 None:intergenic 30.0%
!!! GTGATTTGGGTTTGTTTTTA+GGG + Chr6:96518824-96518843 None:intergenic 30.0%
!!! GTTTTGATTTGACTACAACA+TGG - Chr6:96523099-96523118 MsG0680034909.01.T01:CDS 30.0%
!!! TTCAATTTTTAGTGTCTGCA+AGG - Chr6:96523316-96523335 MsG0680034909.01.T01:five_prime_UTR 30.0%
AAAATCCCATTACTATCGAC+GGG + Chr6:96523140-96523159 None:intergenic 35.0%
AACCATCCCATTAATCATAC+AGG + Chr6:96521224-96521243 None:intergenic 35.0%
AACGAGAAACAATTCCAATG+CGG + Chr6:96520268-96520287 None:intergenic 35.0%
AATAGGGACTAAGGAATTGT+AGG + Chr6:96521819-96521838 None:intergenic 35.0%
AATTCAGGCATCATTCTCAT+AGG - Chr6:96521269-96521288 MsG0680034909.01.T01:intron 35.0%
ACAATGATAGCAATGGTGAA+TGG + Chr6:96520480-96520499 None:intergenic 35.0%
ATAGCTACCATATCATGTTG+AGG + Chr6:96519263-96519282 None:intergenic 35.0%
ATAGCTGCACAAGAAAATCA+AGG + Chr6:96522909-96522928 None:intergenic 35.0%
ATCATTCTCATAGGAGAGAT+AGG - Chr6:96521278-96521297 MsG0680034909.01.T01:intron 35.0%
ATCTAGTGAAAGATAGGGTT+AGG - Chr6:96519397-96519416 MsG0680034909.01.T01:intron 35.0%
CAAATACATGGCTTATCCAT+AGG + Chr6:96520959-96520978 None:intergenic 35.0%
CCTATTGCAAATATAGGGAA+GGG - Chr6:96521833-96521852 MsG0680034909.01.T01:intron 35.0%
CCTTCCCTATATTTGCAATA+GGG + Chr6:96521835-96521854 None:intergenic 35.0%
GAAAGAATAAACAATGCTCG+TGG - Chr6:96522195-96522214 MsG0680034909.01.T01:intron 35.0%
GTAAGTAGGTCAAATGAAGA+AGG + Chr6:96521631-96521650 None:intergenic 35.0%
TACAAACACCATTGCAGTTT+AGG + Chr6:96520427-96520446 None:intergenic 35.0%
TACAATCAAGGATGATATGG+GGG - Chr6:96522589-96522608 MsG0680034909.01.T01:intron 35.0%
TCTAGTGAAAGATAGGGTTA+GGG - Chr6:96519398-96519417 MsG0680034909.01.T01:intron 35.0%
TGATCTATGAAGCATGGATA+CGG - Chr6:96519659-96519678 MsG0680034909.01.T01:intron 35.0%
TGGAACTTTGACATATGAAG+CGG - Chr6:96520289-96520308 MsG0680034909.01.T01:intron 35.0%
TGTAAAATTGGAATCATGCC+GGG - Chr6:96520224-96520243 MsG0680034909.01.T01:intron 35.0%
TTATGTTTCAACTCTGCTGT+GGG + Chr6:96520723-96520742 None:intergenic 35.0%
TTCCTGTATGATTAATGGGA+TGG - Chr6:96521219-96521238 MsG0680034909.01.T01:intron 35.0%
! ATGTGTTGATCTATGAAGCA+TGG - Chr6:96519653-96519672 MsG0680034909.01.T01:intron 35.0%
! ATTCCAATTTTACATTCCCC+AGG + Chr6:96520218-96520237 None:intergenic 35.0%
! ATTGGAATTGTTTCTCGTTC+TGG - Chr6:96520269-96520288 MsG0680034909.01.T01:intron 35.0%
! CAGAAGTGAAAGTGTGATTT+GGG + Chr6:96518837-96518856 None:intergenic 35.0%
! CATGTTTCTATGGTTATGAC+TGG - Chr6:96521452-96521471 MsG0680034909.01.T01:intron 35.0%
! GTTGTCTTTTATTGAGTACC+AGG - Chr6:96520868-96520887 MsG0680034909.01.T01:intron 35.0%
! GTTTCCTTGTGTTTGAGTTT+GGG - Chr6:96520016-96520035 MsG0680034909.01.T01:intron 35.0%
! TCAGAAGTGAAAGTGTGATT+TGG + Chr6:96518838-96518857 None:intergenic 35.0%
! TGTTTCCTTGTGTTTGAGTT+TGG - Chr6:96520015-96520034 MsG0680034909.01.T01:intron 35.0%
! TGTTTCTATGGTTATGACTG+GGG - Chr6:96521454-96521473 MsG0680034909.01.T01:intron 35.0%
! TTTTGCTGCATACAGTACAA+CGG - Chr6:96520930-96520949 MsG0680034909.01.T01:intron 35.0%
!! AAATCTTCTTTTGGTGGATG+AGG - Chr6:96522087-96522106 MsG0680034909.01.T01:intron 35.0%
!!! ATGAGAAGAGTTTTGTTACG+CGG + Chr6:96518896-96518915 None:intergenic 35.0%
!!! ATGAGCCGTTTTTACAATCA+AGG - Chr6:96522577-96522596 MsG0680034909.01.T01:intron 35.0%
!!! ATTTTTAGTGTCTGCAAGGT+TGG - Chr6:96523320-96523339 MsG0680034909.01.T01:five_prime_UTR 35.0%
AAACACCATTGCAGTTTAGG+AGG + Chr6:96520424-96520443 None:intergenic 40.0%
AAATTAAGATGCGGAGGGTA+GGG + Chr6:96521787-96521806 None:intergenic 40.0%
AACACCATTGCAGTTTAGGA+GGG + Chr6:96520423-96520442 None:intergenic 40.0%
AACCAGTGCATCTATCAGAA+TGG + Chr6:96521859-96521878 None:intergenic 40.0%
AAGACAAAATCAGCACCCTT+AGG - Chr6:96522955-96522974 MsG0680034909.01.T01:CDS 40.0%
AAGCCTGGGGAATGTAAAAT+TGG - Chr6:96520212-96520231 MsG0680034909.01.T01:intron 40.0%
AATCCATTCTAAGTGTGCCT+AGG - Chr6:96521980-96521999 MsG0680034909.01.T01:CDS 40.0%
ACAAGTTCACGAGATTCACA+GGG + Chr6:96520673-96520692 None:intergenic 40.0%
AGAACTAAAGTTGAGACCCT+AGG + Chr6:96522000-96522019 None:intergenic 40.0%
AGACAAAATCAGCACCCTTA+GGG - Chr6:96522956-96522975 MsG0680034909.01.T01:CDS 40.0%
AGGCTTAGTGCAATAGTTTG+AGG - Chr6:96523049-96523068 MsG0680034909.01.T01:CDS 40.0%
AGGGATTCCTCAACATGATA+TGG - Chr6:96519253-96519272 MsG0680034909.01.T01:intron 40.0%
ATAATAGCAGCAGCAGCAAA+AGG + Chr6:96519188-96519207 None:intergenic 40.0%
ATAGCTGACACCGACATATT+TGG + Chr6:96519860-96519879 None:intergenic 40.0%
ATCCATTCTAAGTGTGCCTA+GGG - Chr6:96521981-96522000 MsG0680034909.01.T01:CDS 40.0%
ATCGACATGTGTCAGACATT+GGG - Chr6:96519878-96519897 MsG0680034909.01.T01:intron 40.0%
ATTAACTCCCAAGATAAGCC+TGG + Chr6:96520889-96520908 None:intergenic 40.0%
ATTCTCATAGGAGAGATAGG+AGG - Chr6:96521281-96521300 MsG0680034909.01.T01:intron 40.0%
ATTGAGTACCAGGCTTATCT+TGG - Chr6:96520878-96520897 MsG0680034909.01.T01:intron 40.0%
CAAGGAATAACCGGCAAAAA+CGG - Chr6:96518999-96519018 MsG0680034909.01.T01:three_prime_UTR 40.0%
CAATGGTGAATGGCGTAATA+TGG + Chr6:96520470-96520489 None:intergenic 40.0%
CACCATAGGCAATTTCTGAA+GGG - Chr6:96520394-96520413 MsG0680034909.01.T01:intron 40.0%
CAGTCCAAAACTCGTTTGAT+AGG - Chr6:96520167-96520186 MsG0680034909.01.T01:intron 40.0%
CATACCCAAACTCAAACACA+AGG + Chr6:96520023-96520042 None:intergenic 40.0%
CCAAAGGCTTATGTAACCAT+AGG + Chr6:96519945-96519964 None:intergenic 40.0%
CCAGCAATAAATGCAACAAC+AGG + Chr6:96522307-96522326 None:intergenic 40.0%
CCCTATTGCAAATATAGGGA+AGG - Chr6:96521832-96521851 MsG0680034909.01.T01:intron 40.0%
CCCTTCCCTATATTTGCAAT+AGG + Chr6:96521836-96521855 None:intergenic 40.0%
CCTATGGTTACATAAGCCTT+TGG - Chr6:96519942-96519961 MsG0680034909.01.T01:intron 40.0%
CCTGTTGTTGCATTTATTGC+TGG - Chr6:96522304-96522323 MsG0680034909.01.T01:intron 40.0%
GAATACGGAACGAATATGGT+TGG - Chr6:96519047-96519066 MsG0680034909.01.T01:three_prime_UTR 40.0%
GATCGAATACGGAACGAATA+TGG - Chr6:96519043-96519062 MsG0680034909.01.T01:three_prime_UTR 40.0%
GATGATGCCTAGGATAATAC+TGG - Chr6:96520587-96520606 MsG0680034909.01.T01:intron 40.0%
GATTAGTGGCTTAACACAGA+TGG + Chr6:96520626-96520645 None:intergenic 40.0%
GCTTAACAGAAGGAGAAATG+GGG + Chr6:96521708-96521727 None:intergenic 40.0%
GGCTTAACAGAAGGAGAAAT+GGG + Chr6:96521709-96521728 None:intergenic 40.0%
GTGATCTGTCAAGGAATAAC+CGG - Chr6:96518990-96519009 MsG0680034909.01.T01:three_prime_UTR 40.0%
GTTATGTTTCAACTCTGCTG+TGG + Chr6:96520724-96520743 None:intergenic 40.0%
GTTTACCAAACAACTGCTGT+TGG - Chr6:96520994-96521013 MsG0680034909.01.T01:intron 40.0%
TAAATTAAGATGCGGAGGGT+AGG + Chr6:96521788-96521807 None:intergenic 40.0%
TACAGTACAACGGTTACCTA+TGG - Chr6:96520940-96520959 MsG0680034909.01.T01:intron 40.0%
TATCGACATGTGTCAGACAT+TGG - Chr6:96519877-96519896 MsG0680034909.01.T01:intron 40.0%
TATGTTTCAACTCTGCTGTG+GGG + Chr6:96520722-96520741 None:intergenic 40.0%
TATTATGGAAGCGGTTGAAG+CGG - Chr6:96519202-96519221 MsG0680034909.01.T01:CDS 40.0%
TCATATCAAGTGTCACGTGT+CGG + Chr6:96519782-96519801 None:intergenic 40.0%
TCCGCAACAGAATTGAAAAC+CGG + Chr6:96519116-96519135 None:intergenic 40.0%
TGATTCCCGTCGATAGTAAT+GGG - Chr6:96523132-96523151 MsG0680034909.01.T01:CDS 40.0%
TGATTGCCTTACAAAGTTCC+TGG - Chr6:96521077-96521096 MsG0680034909.01.T01:CDS 40.0%
TTCACTCTCCAAAGAGCTTA+TGG + Chr6:96522645-96522664 None:intergenic 40.0%
TTCTTGTGCAGCTATTGTGT+CGG - Chr6:96522914-96522933 MsG0680034909.01.T01:CDS 40.0%
TTGAGTACCAGGCTTATCTT+GGG - Chr6:96520879-96520898 MsG0680034909.01.T01:intron 40.0%
TTGATTCCCGTCGATAGTAA+TGG - Chr6:96523131-96523150 MsG0680034909.01.T01:CDS 40.0%
! CTATGCACATGTCACTTCAA+AGG + Chr6:96519908-96519927 None:intergenic 40.0%
! GTTCTGGGTTTGATTGTAGT+GGG - Chr6:96522015-96522034 MsG0680034909.01.T01:intron 40.0%
! TAGGGTCTCAACTTTAGTTC+TGG - Chr6:96521999-96522018 MsG0680034909.01.T01:intron 40.0%
! TCCGGTTTTCAATTCTGTTG+CGG - Chr6:96519112-96519131 MsG0680034909.01.T01:CDS 40.0%
! TGAAGTGTCAGTATCATGTC+AGG + Chr6:96519460-96519479 None:intergenic 40.0%
! TGGTCCTATCAAACGAGTTT+TGG + Chr6:96520174-96520193 None:intergenic 40.0%
! TTTTGCTGCTGCTGCTATTA+TGG - Chr6:96519187-96519206 MsG0680034909.01.T01:CDS 40.0%
!! AGGGTCTCAACTTTAGTTCT+GGG - Chr6:96522000-96522019 MsG0680034909.01.T01:intron 40.0%
!! AGTTCTGGGTTTGATTGTAG+TGG - Chr6:96522014-96522033 MsG0680034909.01.T01:intron 40.0%
!! CGCTGTTTCTATAAGCTCTT+TGG - Chr6:96522724-96522743 MsG0680034909.01.T01:intron 40.0%
!! GGGTGTTATTATCTGGTGAA+TGG - Chr6:96522130-96522149 MsG0680034909.01.T01:intron 40.0%
!! GTCTCTTGGGTGTTATTATC+TGG - Chr6:96522123-96522142 MsG0680034909.01.T01:intron 40.0%
!!! GATTTTTTTCCAGCCACCAT+AGG - Chr6:96520380-96520399 MsG0680034909.01.T01:intron 40.0%
AAAGGCGGAACGGAACATTT+AGG - Chr6:96519086-96519105 MsG0680034909.01.T01:CDS 45.0%
AAATGGAAGCCATGGCAGAA+TGG - Chr6:96520350-96520369 MsG0680034909.01.T01:intron 45.0%
AAGGCGGAACGGAACATTTA+GGG - Chr6:96519087-96519106 MsG0680034909.01.T01:CDS 45.0%
AAGTTTCTGTCTTGTGGGGA+AGG - Chr6:96521408-96521427 MsG0680034909.01.T01:intron 45.0%
ACCGAACAAGCGATCGAATA+CGG - Chr6:96519032-96519051 MsG0680034909.01.T01:three_prime_UTR 45.0%
ACGGACACTTGACACAACAT+TGG - Chr6:96519561-96519580 MsG0680034909.01.T01:intron 45.0%
AGGGATGGAATTGAGGGAAT+GGG + Chr6:96521768-96521787 None:intergenic 45.0%
AGTTTCTGTCTTGTGGGGAA+GGG - Chr6:96521409-96521428 MsG0680034909.01.T01:intron 45.0%
ATGAGAGGAAGAGAAGAGAG+GGG + Chr6:96521730-96521749 None:intergenic 45.0%
ATGCACTGAAGACATCGACA+AGG + Chr6:96521178-96521197 None:intergenic 45.0%
ATGTTTCAACTCTGCTGTGG+GGG + Chr6:96520721-96520740 None:intergenic 45.0%
ATTGGAGGAGATCCCTTCAA+TGG - Chr6:96521042-96521061 MsG0680034909.01.T01:CDS 45.0%
CAACGTGCCAGTATTATCCT+AGG + Chr6:96520597-96520616 None:intergenic 45.0%
CAATCCACATGTGTGGGTAT+TGG - Chr6:96521024-96521043 MsG0680034909.01.T01:intron 45.0%
CATCATCACCAATGACGAGA+GGG + Chr6:96520574-96520593 None:intergenic 45.0%
CCACCATAGGCAATTTCTGA+AGG - Chr6:96520393-96520412 MsG0680034909.01.T01:intron 45.0%
CCAGGTTTGTGAATGTAACC+CGG + Chr6:96520245-96520264 None:intergenic 45.0%
CCTTCAGAAATTGCCTATGG+TGG + Chr6:96520396-96520415 None:intergenic 45.0%
CGTTAATAGCTAGAAGTGGC+TGG + Chr6:96521577-96521596 None:intergenic 45.0%
CTCCCTTCAGAAATTGCCTA+TGG + Chr6:96520399-96520418 None:intergenic 45.0%
CTTGGACAATCCACATGTGT+GGG - Chr6:96521018-96521037 MsG0680034909.01.T01:intron 45.0%
GACAAGTTCACGAGATTCAC+AGG + Chr6:96520674-96520693 None:intergenic 45.0%
GATCTGCCAGGAACTTTGTA+AGG + Chr6:96521086-96521105 None:intergenic 45.0%
GATGAGAGGAAGAGAAGAGA+GGG + Chr6:96521731-96521750 None:intergenic 45.0%
GGATGCTGCTGCACTAATTA+AGG - Chr6:96521316-96521335 MsG0680034909.01.T01:intron 45.0%
GGGCTTAACAGAAGGAGAAA+TGG + Chr6:96521710-96521729 None:intergenic 45.0%
TACGGAACGAATATGGTTGG+CGG - Chr6:96519050-96519069 MsG0680034909.01.T01:three_prime_UTR 45.0%
TAGGGATGGAATTGAGGGAA+TGG + Chr6:96521769-96521788 None:intergenic 45.0%
TCCGTATTCGATCGCTTGTT+CGG + Chr6:96519036-96519055 None:intergenic 45.0%
TCTATGGTTATGACTGGGGA+GGG - Chr6:96521458-96521477 MsG0680034909.01.T01:intron 45.0%
TCTTGTGCAGCTATTGTGTC+GGG - Chr6:96522915-96522934 MsG0680034909.01.T01:CDS 45.0%
TGCTGCTGCTATTATGGAAG+CGG - Chr6:96519193-96519212 MsG0680034909.01.T01:CDS 45.0%
TGGAAAGTCATCGTGTGTGA+AGG + Chr6:96518873-96518892 None:intergenic 45.0%
TGGTGAATGGCGTAATATGG+CGG + Chr6:96520467-96520486 None:intergenic 45.0%
TTCTATGGTTATGACTGGGG+AGG - Chr6:96521457-96521476 MsG0680034909.01.T01:intron 45.0%
TTCTGTTGCGGAAGCGAAAA+CGG - Chr6:96519124-96519143 MsG0680034909.01.T01:CDS 45.0%
! AACGGAACATTTAGGGCTTC+CGG - Chr6:96519094-96519113 MsG0680034909.01.T01:CDS 45.0%
! CATAGGCAATTTCTGAAGGG+AGG - Chr6:96520397-96520416 MsG0680034909.01.T01:intron 45.0%
! CGCTGTTTCCATAAGCTCTT+TGG - Chr6:96522634-96522653 MsG0680034909.01.T01:intron 45.0%
! GTCAAAGTACCTTCTGTCTG+AGG + Chr6:96521108-96521127 None:intergenic 45.0%
! TTGATGATACCAGGGCAGTT+TGG + Chr6:96520194-96520213 None:intergenic 45.0%
!! AAGGGGTTGATGAGAAGTTG+CGG + Chr6:96518938-96518957 None:intergenic 45.0%
!! ATGGCAGCTCCAATTTTAGC+TGG + Chr6:96523008-96523027 None:intergenic 45.0%
!! GTGAAACGTTCCGTTTTTGC+CGG + Chr6:96519012-96519031 None:intergenic 45.0%
!!! AGAAGAGTTTTGTTACGCGG+TGG + Chr6:96518893-96518912 None:intergenic 45.0%
!!! TGGCAGCTCCAATTTTAGCT+GGG + Chr6:96523007-96523026 None:intergenic 45.0%
ACAGATGTGGAGTCGATGAG+AGG + Chr6:96521745-96521764 None:intergenic 50.0%
ACCAATGACGAGAGGGACTA+GGG + Chr6:96520567-96520586 None:intergenic 50.0%
ATAGCAGCAGCAGCAAAAGG+AGG + Chr6:96519185-96519204 None:intergenic 50.0%
ATTCACAAACCTGGCCGCAT+TGG - Chr6:96520251-96520270 MsG0680034909.01.T01:intron 50.0%
CAAGGCCAACAGCAGTTGTT+TGG + Chr6:96521002-96521021 None:intergenic 50.0%
CAGAAATTGCCTATGGTGGC+TGG + Chr6:96520392-96520411 None:intergenic 50.0%
CAGAAGGAGAAATGGGGATC+CGG + Chr6:96521702-96521721 None:intergenic 50.0%
CCGGGTTACATTCACAAACC+TGG - Chr6:96520242-96520261 MsG0680034909.01.T01:intron 50.0%
CCTTGGACAATCCACATGTG+TGG - Chr6:96521017-96521036 MsG0680034909.01.T01:intron 50.0%
CGATGAGAGGAAGAGAAGAG+AGG + Chr6:96521732-96521751 None:intergenic 50.0%
GAAACAATTCCAATGCGGCC+AGG + Chr6:96520263-96520282 None:intergenic 50.0%
GAAGAGAGGGGCTTAACAGA+AGG + Chr6:96521718-96521737 None:intergenic 50.0%
GACCCTAGGCACACTTAGAA+TGG + Chr6:96521986-96522005 None:intergenic 50.0%
GAGGGTAGGGATGGAATTGA+GGG + Chr6:96521774-96521793 None:intergenic 50.0%
GATAGGAGGAACTGCAGAAG+AGG - Chr6:96521295-96521314 MsG0680034909.01.T01:intron 50.0%
GCATCATCACCAATGACGAG+AGG + Chr6:96520575-96520594 None:intergenic 50.0%
GGCCATTCTGATAGATGCAC+TGG - Chr6:96521854-96521873 MsG0680034909.01.T01:CDS 50.0%
GGCGCGTTAATAGCTAGAAG+TGG + Chr6:96521581-96521600 None:intergenic 50.0%
GTGGAGTCCCCAGCTAAAAT+TGG - Chr6:96522996-96523015 MsG0680034909.01.T01:CDS 50.0%
TACTCCGAAGAAAGGCGGAA+CGG - Chr6:96519076-96519095 MsG0680034909.01.T01:exon 50.0%
TCCAATTGAGCTCCAGCTTG+TGG - Chr6:96523244-96523263 MsG0680034909.01.T01:CDS 50.0%
TCCTCCAATACCCACACATG+TGG + Chr6:96521031-96521050 None:intergenic 50.0%
TGTGACTCCAGCTTCCCTAA+GGG + Chr6:96522973-96522992 None:intergenic 50.0%
TGTTCCGTTCCGCCTTTCTT+CGG + Chr6:96519083-96519102 None:intergenic 50.0%
TTCCTCCCATCTTCTCAGTC+CGG - Chr6:96521680-96521699 MsG0680034909.01.T01:intron 50.0%
TTGAGGGAATGGGACAGATG+TGG + Chr6:96521758-96521777 None:intergenic 50.0%
TTGATAGGACCAAACTGCCC+TGG - Chr6:96520182-96520201 MsG0680034909.01.T01:intron 50.0%
! CAAACAACTGCTGTTGGCCT+TGG - Chr6:96521000-96521019 MsG0680034909.01.T01:intron 50.0%
! CCACACATGTGGATTGTCCA+AGG + Chr6:96521020-96521039 None:intergenic 50.0%
! GAATGGCGTAATATGGCGGA+AGG + Chr6:96520463-96520482 None:intergenic 50.0%
! GTGGGTTGTCGACATGCAAA+AGG - Chr6:96522033-96522052 MsG0680034909.01.T01:intron 50.0%
!! CGTCATTGGTGATGATGCCT+AGG - Chr6:96520577-96520596 MsG0680034909.01.T01:intron 50.0%
!! GGTGTTACTCCGAAGAAAGG+CGG - Chr6:96519071-96519090 MsG0680034909.01.T01:exon 50.0%
!! TCCACATGTGTGGGTATTGG+AGG - Chr6:96521027-96521046 MsG0680034909.01.T01:intron 50.0%
!!! GGCAGCTCCAATTTTAGCTG+GGG + Chr6:96523006-96523025 None:intergenic 50.0%
AGCACACGCGTGATCTGTCA+AGG - Chr6:96518981-96519000 MsG0680034909.01.T01:three_prime_UTR 55.0%
AGCTATTGTGTCGGGTGGCA+AGG - Chr6:96522923-96522942 MsG0680034909.01.T01:CDS 55.0%
ATCAGCACCCTTAGGGAAGC+TGG - Chr6:96522963-96522982 MsG0680034909.01.T01:CDS 55.0%
ATCCGGACTGAGAAGATGGG+AGG + Chr6:96521685-96521704 None:intergenic 55.0%
CACCAATGACGAGAGGGACT+AGG + Chr6:96520568-96520587 None:intergenic 55.0%
CCCTGGTATCATCAAGCCTG+GGG - Chr6:96520199-96520218 MsG0680034909.01.T01:intron 55.0%
CTGGCAGATCCTCAGACAGA+AGG - Chr6:96521096-96521115 MsG0680034909.01.T01:CDS 55.0%
CTGTGACTCCAGCTTCCCTA+AGG + Chr6:96522974-96522993 None:intergenic 55.0%
CTTCTGTCTGAGGATCTGCC+AGG + Chr6:96521098-96521117 None:intergenic 55.0%
GAGGCCCTCCTAAACTGCAA+TGG - Chr6:96520416-96520435 MsG0680034909.01.T01:intron 55.0%
GCCACAAGCTGGAGCTCAAT+TGG + Chr6:96523248-96523267 None:intergenic 55.0%
GCCCTGGTATCATCAAGCCT+GGG - Chr6:96520198-96520217 MsG0680034909.01.T01:intron 55.0%
GCTATTGTGTCGGGTGGCAA+GGG - Chr6:96522924-96522943 MsG0680034909.01.T01:CDS 55.0%
GGAAGCTGGAGTCACAGTTG+TGG - Chr6:96522977-96522996 MsG0680034909.01.T01:CDS 55.0%
GGAGGGTAGGGATGGAATTG+AGG + Chr6:96521775-96521794 None:intergenic 55.0%
GGGATCCGGACTGAGAAGAT+GGG + Chr6:96521688-96521707 None:intergenic 55.0%
GTCAGTCCAGAAAGGAGGCA+CGG - Chr6:96518774-96518793 MsG0680034909.01.T01:three_prime_UTR 55.0%
TAAGATGCGGAGGGTAGGGA+TGG + Chr6:96521783-96521802 None:intergenic 55.0%
TACAAACCAGCGCCACAAGC+TGG + Chr6:96523259-96523278 None:intergenic 55.0%
TCCAACACGCCATTCTGCCA+TGG + Chr6:96520362-96520381 None:intergenic 55.0%
TCCCTAGTCCCTCTCGTCAT+TGG - Chr6:96520563-96520582 MsG0680034909.01.T01:intron 55.0%
TGAGAAGTTGCGGCGGTTGT+TGG + Chr6:96518928-96518947 None:intergenic 55.0%
TGCCCTGGTATCATCAAGCC+TGG - Chr6:96520197-96520216 MsG0680034909.01.T01:intron 55.0%
TGTGCAGCTATTGTGTCGGG+TGG - Chr6:96522918-96522937 MsG0680034909.01.T01:CDS 55.0%
! CCCCAGGCTTGATGATACCA+GGG + Chr6:96520202-96520221 None:intergenic 55.0%
! CTTTTGTCGACGAACACCGC+GGG + Chr6:96518963-96518982 None:intergenic 55.0%
! GCTTTTGTCGACGAACACCG+CGG + Chr6:96518964-96518983 None:intergenic 55.0%
! TCAGTCCAGAAAGGAGGCAC+GGG - Chr6:96518775-96518794 MsG0680034909.01.T01:three_prime_UTR 55.0%
! TCCCCAGGCTTGATGATACC+AGG + Chr6:96520203-96520222 None:intergenic 55.0%
! TTTTGTCGACGAACACCGCG+GGG + Chr6:96518962-96518981 None:intergenic 55.0%
!! GGCGGTGTTACTCCGAAGAA+AGG - Chr6:96519068-96519087 MsG0680034909.01.T01:exon 55.0%
!! GGGTTGATGAGAAGTTGCGG+CGG + Chr6:96518935-96518954 None:intergenic 55.0%
CTCCAGCGTGTCCCATACGA+CGG + Chr6:96522348-96522367 None:intergenic 60.0%
GAAACCCCGTGCCTCCTTTC+TGG + Chr6:96518783-96518802 None:intergenic 60.0%
GAAGTTGCGGCGGTTGTTGG+AGG + Chr6:96518925-96518944 None:intergenic 60.0%
GCAGCAGCAGCAAAAGGAGG+AGG + Chr6:96519182-96519201 None:intergenic 60.0%
GCCATGGCAGAATGGCGTGT+TGG - Chr6:96520358-96520377 MsG0680034909.01.T01:intron 60.0%
GCTGGATTAACTGCTCCCCC+TGG - Chr6:96522322-96522341 MsG0680034909.01.T01:intron 60.0%
GGAAGCGGTTGAAGCGGAGT+TGG - Chr6:96519208-96519227 MsG0680034909.01.T01:intron 60.0%
GGGGATCCGGACTGAGAAGA+TGG + Chr6:96521689-96521708 None:intergenic 60.0%
TTTGTCGACGAACACCGCGG+GGG + Chr6:96518961-96518980 None:intergenic 60.0%
! CAGTCCAGAAAGGAGGCACG+GGG - Chr6:96518776-96518795 MsG0680034909.01.T01:three_prime_UTR 60.0%
CGTCGTATGGGACACGCTGG+AGG - Chr6:96522346-96522365 MsG0680034909.01.T01:intron 65.0%
CGTGTCCCATACGACGGCCA+GGG + Chr6:96522342-96522361 None:intergenic 65.0%
CTCATCAACCCCTTCCCCCG+CGG - Chr6:96518944-96518963 MsG0680034909.01.T01:three_prime_UTR 65.0%
GTGTCCCATACGACGGCCAG+GGG + Chr6:96522341-96522360 None:intergenic 65.0%
TGAGCTCCAGCTTGTGGCGC+TGG - Chr6:96523250-96523269 MsG0680034909.01.T01:exon 65.0%
TGTCCCATACGACGGCCAGG+GGG + Chr6:96522340-96522359 None:intergenic 65.0%
CGACGAACACCGCGGGGGAA+GGG + Chr6:96518956-96518975 None:intergenic 70.0%
GACGAACACCGCGGGGGAAG+GGG + Chr6:96518955-96518974 None:intergenic 70.0%
GCGTGTCCCATACGACGGCC+AGG + Chr6:96522343-96522362 None:intergenic 70.0%
GCTCCCCCTGGCCGTCGTAT+GGG - Chr6:96522334-96522353 MsG0680034909.01.T01:intron 70.0%
GGCCGTCGTATGGGACACGC+TGG - Chr6:96522343-96522362 MsG0680034909.01.T01:intron 70.0%
TCGACGAACACCGCGGGGGA+AGG + Chr6:96518957-96518976 None:intergenic 70.0%
TGCTCCCCCTGGCCGTCGTA+TGG - Chr6:96522333-96522352 MsG0680034909.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 96518771 96523375 96518771 ID=MsG0680034909.01;Name=MsG0680034909.01
Chr6 mRNA 96518771 96523375 96518771 ID=MsG0680034909.01.T01;Parent=MsG0680034909.01;Name=MsG0680034909.01.T01;_AED=0.49;_eAED=0.49;_QI=111|1|1|1|1|1|6|311|323
Chr6 exon 96518771 96519221 96518771 ID=MsG0680034909.01.T01:exon:6925;Parent=MsG0680034909.01.T01
Chr6 exon 96519779 96519860 96519779 ID=MsG0680034909.01.T01:exon:6924;Parent=MsG0680034909.01.T01
Chr6 exon 96520809 96520870 96520809 ID=MsG0680034909.01.T01:exon:6923;Parent=MsG0680034909.01.T01
Chr6 exon 96521029 96521152 96521029 ID=MsG0680034909.01.T01:exon:6922;Parent=MsG0680034909.01.T01
Chr6 exon 96521836 96522006 96521836 ID=MsG0680034909.01.T01:exon:6921;Parent=MsG0680034909.01.T01
Chr6 exon 96522872 96523375 96522872 ID=MsG0680034909.01.T01:exon:6920;Parent=MsG0680034909.01.T01
Chr6 five_prime_UTR 96523265 96523375 96523265 ID=MsG0680034909.01.T01:five_prime_utr;Parent=MsG0680034909.01.T01
Chr6 CDS 96522872 96523264 96522872 ID=MsG0680034909.01.T01:cds;Parent=MsG0680034909.01.T01
Chr6 CDS 96521836 96522006 96521836 ID=MsG0680034909.01.T01:cds;Parent=MsG0680034909.01.T01
Chr6 CDS 96521029 96521152 96521029 ID=MsG0680034909.01.T01:cds;Parent=MsG0680034909.01.T01
Chr6 CDS 96520809 96520870 96520809 ID=MsG0680034909.01.T01:cds;Parent=MsG0680034909.01.T01
Chr6 CDS 96519779 96519860 96519779 ID=MsG0680034909.01.T01:cds;Parent=MsG0680034909.01.T01
Chr6 CDS 96519082 96519221 96519082 ID=MsG0680034909.01.T01:cds;Parent=MsG0680034909.01.T01
Chr6 three_prime_UTR 96518771 96519081 96518771 ID=MsG0680034909.01.T01:three_prime_utr;Parent=MsG0680034909.01.T01
Gene Sequence

>MsG0680034909.01.T01

ATGACTTTCCACCGCGTAACAAAACTCTTCTCATCAATCGCCTCCAACAACCGCCGCAACTTCTCATCAACCCCTTCCCCCGCGGTGTTCGTCGACAAAAGCACACGCGTGATCTGTCAAGGAATAACCGGCAAAAACGGAACGTTTCACACCGAACAAGCGATCGAATACGGAACGAATATGGTTGGCGGTGTTACTCCGAAGAAAGGCGGAACGGAACATTTAGGGCTTCCGGTTTTCAATTCTGTTGCGGAAGCGAAAACGGAGACGAAAGCGAATGCTTCTGTTATTTATGTTCCTCCTCCTTTTGCTGCTGCTGCTATTATGGAAGCGGTTGAAGCGGAGTTGGATCTTGTTGTTTGTATTACTGAAGGGATTCCTCAACATGATATGGTACGAGTTAAAGCAGCACTTAACAGACAGTCCAAAACTCGTTTGATAGGACCAAACTGCCCTGGTATCATCAAGCCTGGGGAATGTAAAATTGGAATCATGCCGGGTTACATTCACAAACCTGGCCGCATTGGAATTGTTTCTCGTTCTGGAACTTTGACATATGAAGCGGTTTACCAAACAACTGCTGTTGGCCTTGGACAATCCACATGTGTGGGTATTGGAGGAGATCCCTTCAATGGAACAAATTTTGTTGATTGCCTTACAAAGTTCCTGGCAGATCCTCAGACAGAAGGCATCATTCTCATAGGAGAGATAGGAGGAACTGCAGAAGAGGATGCTGCTGCACTAATTAAGGAAAGCGGGACTGAGAAGCCTGTTGTTGCATTTATTGCTGGATTAACTGCTCCCCCTGGCCGTCGTATGGGACACGCTGGAGCTATTGTGTCGGGTGGCAAGGGTACTGCTCAAGACAAAATCAGCACCCTTAGGGAAGCTGGAGTCACAGTTGTGGAGTCCCCAGCTAAAATTGGAGCTGCCATGTTTGATATTTTCAAGCAGAAAGGCTTAGTGCAATAG
Protein sequence

>MsG0680034909.01.T01

MTFHRVTKLFSSIASNNRRNFSSTPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVFNSVAEAKTETKANASVIYVPPPFAAAAIMEAVEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVYQTTAVGLGQSTCVGIGGDPFNGTNFVDCLTKFLADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKISTLREAGVTVVESPAKIGAAMFDIFKQKGLVQ*