Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021836.01.T01 | RHN61694.1 | 99.77 | 434 | 1 | 0 | 1 | 434 | 28 | 461 | 0 | 906 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021836.01.T01 | Q9LTR9 | 79.032 | 434 | 91 | 0 | 1 | 434 | 1 | 434 | 0 | 738 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021836.01.T01 | A0A396IBS8 | 99.770 | 434 | 1 | 0 | 1 | 434 | 28 | 461 | 0.0 | 906 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000544.01 | MsG0480021836.01 | 0.812690 | 3.734750e-51 | 2.390473e-48 |
| MsG0180001248.01 | MsG0480021836.01 | 0.852928 | 3.344907e-61 | 7.102817e-58 |
| MsG0180002716.01 | MsG0480021836.01 | 0.800950 | 1.132908e-48 | 5.344322e-46 |
| MsG0180003767.01 | MsG0480021836.01 | 0.827919 | 1.198929e-54 | 1.173771e-51 |
| MsG0180004183.01 | MsG0480021836.01 | 0.829533 | 4.882436e-55 | 5.010649e-52 |
| MsG0180006034.01 | MsG0480021836.01 | 0.804132 | 2.501839e-49 | 1.279827e-46 |
| MsG0180006267.01 | MsG0480021836.01 | 0.836626 | 8.382119e-57 | 1.062212e-53 |
| MsG0280010604.01 | MsG0480021836.01 | 0.885776 | 6.072764e-72 | 4.224151e-68 |
| MsG0280011059.01 | MsG0480021836.01 | 0.854000 | 1.646941e-61 | 3.625692e-58 |
| MsG0380013794.01 | MsG0480021836.01 | 0.837381 | 5.374187e-57 | 6.968178e-54 |
| MsG0380013811.01 | MsG0480021836.01 | 0.822389 | 2.431881e-53 | 2.032787e-50 |
| MsG0480019689.01 | MsG0480021836.01 | 0.828927 | 6.848800e-55 | 6.904482e-52 |
| MsG0480021201.01 | MsG0480021836.01 | -0.821544 | 3.816730e-53 | 3.114373e-50 |
| MsG0480021776.01 | MsG0480021836.01 | 0.809387 | 1.939986e-50 | 1.137529e-47 |
| MsG0480021836.01 | MsG0480023973.01 | 0.808078 | 3.696187e-50 | 2.093414e-47 |
| MsG0480021836.01 | MsG0580025182.01 | 0.848676 | 5.265206e-60 | 9.737725e-57 |
| MsG0480021836.01 | MsG0580027064.01 | 0.866995 | 1.895723e-65 | 6.515263e-62 |
| MsG0480021836.01 | MsG0580029784.01 | 0.826349 | 2.849123e-54 | 2.665211e-51 |
| MsG0480021836.01 | MsG0680030356.01 | 0.803303 | 3.717755e-49 | 1.861717e-46 |
| MsG0480021836.01 | MsG0680034394.01 | 0.808112 | 3.635073e-50 | 2.060647e-47 |
| MsG0480021836.01 | MsG0680034909.01 | 0.834818 | 2.404770e-56 | 2.886360e-53 |
| MsG0480021836.01 | MsG0680035311.01 | 0.837081 | 6.415913e-57 | 8.242542e-54 |
| MsG0480021836.01 | MsG0780038309.01 | 0.800243 | 1.579484e-48 | 7.318030e-46 |
| MsG0480021836.01 | MsG0780040071.01 | 0.852990 | 3.211685e-61 | 6.834911e-58 |
| MsG0480021836.01 | MsG0780041117.01 | 0.843719 | 1.178635e-58 | 1.860374e-55 |
| MsG0480021836.01 | MsG0780041470.01 | 0.858191 | 9.755567e-63 | 2.469239e-59 |
| MsG0480021836.01 | MsG0880042435.01 | 0.824534 | 7.663554e-54 | 6.806904e-51 |
| MsG0480021836.01 | MsG0880045010.01 | 0.804104 | 2.535270e-49 | 1.296026e-46 |
| MsG0480021836.01 | MsG0880045548.01 | 0.873387 | 1.529857e-67 | 6.626897e-64 |
| MsG0480021836.01 | MsG0880045605.01 | 0.823458 | 1.370160e-53 | 1.180387e-50 |
| MsG0480021836.01 | MsG0880046843.01 | 0.804688 | 1.915331e-49 | 9.939714e-47 |
| MsG0480021836.01 | MsG0880047582.01 | 0.822861 | 1.888388e-53 | 1.599742e-50 |
| MsG0380016191.01 | MsG0480021836.01 | 0.850864 | 1.288789e-60 | 2.559886e-57 |
| MsG0380016547.01 | MsG0480021836.01 | 0.834829 | 2.390766e-56 | 2.870576e-53 |
| MsG0480018091.01 | MsG0480021836.01 | 0.841099 | 5.833458e-58 | 8.480646e-55 |
| MsG0280007193.01 | MsG0480021836.01 | 0.816672 | 4.900785e-52 | 3.494896e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021836.01.T01 | MTR_4g077300 | 99.770 | 434 | 1 | 0 | 1 | 434 | 1 | 434 | 0.0 | 905 |
| MsG0480021836.01.T01 | MTR_4g077300 | 99.770 | 434 | 1 | 0 | 1 | 434 | 6 | 439 | 0.0 | 905 |
| MsG0480021836.01.T01 | MTR_2g040010 | 80.907 | 419 | 76 | 1 | 20 | 434 | 4 | 422 | 0.0 | 722 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021836.01.T01 | AT5G57020 | 79.032 | 434 | 91 | 0 | 1 | 434 | 1 | 434 | 0.0 | 738 |
| MsG0480021836.01.T01 | AT2G44175 | 42.391 | 92 | 48 | 1 | 28 | 119 | 10 | 96 | 2.52e-18 | 80.9 |
Find 110 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGACCAAAGACATAAATTT+TGG | 0.100981 | 4:-64965481 | MsG0480021836.01.T01:CDS |
| GCTTTCAAAGTTGAGTAATT+TGG | 0.173591 | 4:+64964570 | None:intergenic |
| TCAGTGACCTCGTGAGTTTC+AGG | 0.204412 | 4:+64964636 | None:intergenic |
| TTTCCCAAAATTTATGTCTT+TGG | 0.247451 | 4:+64965477 | None:intergenic |
| ACCGACATCAATTAGTTTCT+TGG | 0.257794 | 4:+64964896 | None:intergenic |
| CTGCGGTTACAAGGCTAATT+AGG | 0.267951 | 4:-64964764 | MsG0480021836.01.T01:CDS |
| CTTTCAAAGTTGAGTAATTT+GGG | 0.299469 | 4:+64964571 | None:intergenic |
| TCAGCAGGTGCATTTCCATC+TGG | 0.302312 | 4:+64965557 | None:intergenic |
| TATAAAGGCAACCATCTTCT+TGG | 0.307468 | 4:+64965148 | None:intergenic |
| TGAAGTAGCCCGGAGGTTGC+AGG | 0.313936 | 4:+64965204 | None:intergenic |
| CCGTGATGAGGTTGTTAATA+TGG | 0.329122 | 4:-64965099 | MsG0480021836.01.T01:CDS |
| CCTCATCACGGACTCGAATT+CGG | 0.339678 | 4:+64965111 | None:intergenic |
| TTCTTGAAGGAACTGAAGTT+TGG | 0.345695 | 4:-64964420 | MsG0480021836.01.T01:CDS |
| GCGCTGGGCCCTGCAACCTC+CGG | 0.353029 | 4:-64965213 | MsG0480021836.01.T01:CDS |
| AAGATGGTTGCCTTTATAAC+AGG | 0.354888 | 4:-64965143 | MsG0480021836.01.T01:CDS |
| CCTGGTGTGACTGTTGATTC+TGG | 0.363701 | 4:+64964816 | None:intergenic |
| GAATGTTGTCGATAGTTATC+TGG | 0.365092 | 4:-64964667 | MsG0480021836.01.T01:CDS |
| ATTCTCCAAGTGCACCCTTC+TGG | 0.370742 | 4:+64965001 | None:intergenic |
| TGGAGCATTGGCTTCTTCCT+AGG | 0.375688 | 4:-64964692 | MsG0480021836.01.T01:CDS |
| CTCATCACGGACTCGAATTC+GGG | 0.375743 | 4:+64965112 | None:intergenic |
| TACTTCACAGCTTGGCATAT+TGG | 0.377050 | 4:-64965188 | MsG0480021836.01.T01:CDS |
| CAGCAGGTGCATTTCCATCT+GGG | 0.382043 | 4:+64965558 | None:intergenic |
| CCGACATCAATTAGTTTCTT+GGG | 0.382092 | 4:+64964897 | None:intergenic |
| GGGTGCACTTGGAGAATATA+TGG | 0.383844 | 4:-64964995 | MsG0480021836.01.T01:CDS |
| AAGATGATGAGAACATGTTT+AGG | 0.387407 | 4:-64965259 | MsG0480021836.01.T01:CDS |
| CAGTAGCAACTTGCCAATAC+TGG | 0.390437 | 4:-64964935 | MsG0480021836.01.T01:CDS |
| GGTGCATTTCCATCTGGGTT+GGG | 0.393200 | 4:+64965563 | None:intergenic |
| GGCAGGGATACCTGTTATAA+AGG | 0.401328 | 4:+64965133 | None:intergenic |
| GTTTCTCTCGGCTCGGTGCT+CGG | 0.405888 | 4:-64964875 | MsG0480021836.01.T01:CDS |
| GTTGGGCAGTTCAAGGATAT+AGG | 0.408153 | 4:-64965446 | MsG0480021836.01.T01:CDS |
| CCCCTTATCTGAGGTAAAAC+AGG | 0.409550 | 4:-64965384 | MsG0480021836.01.T01:CDS |
| CGCTGGGCCCTGCAACCTCC+GGG | 0.413953 | 4:-64965212 | MsG0480021836.01.T01:CDS |
| GCAAAATGAAAGCTTCTTGA+AGG | 0.425222 | 4:-64964433 | MsG0480021836.01.T01:CDS |
| TGTTAAAACTTCCAAGAAGA+TGG | 0.425379 | 4:-64965159 | MsG0480021836.01.T01:CDS |
| ACCTTCCTAACCTCTATGAA+TGG | 0.426427 | 4:-64965352 | MsG0480021836.01.T01:CDS |
| ATATCCTTGAACTGCCCAAC+AGG | 0.427798 | 4:+64965449 | None:intergenic |
| TTGGGCAGTTCAAGGATATA+GGG | 0.438419 | 4:-64965445 | MsG0480021836.01.T01:CDS |
| ATCTCTACAACTACCGAGTA+AGG | 0.445048 | 4:-64964371 | MsG0480021836.01.T01:CDS |
| ACACTTCCTTCTAGTATCCT+TGG | 0.449112 | 4:-64964597 | MsG0480021836.01.T01:CDS |
| CAACATAATTATTAGCAAGA+AGG | 0.456558 | 4:+64965282 | None:intergenic |
| GGTGGTTCGATAGGACCTTC+AGG | 0.457527 | 4:+64965410 | None:intergenic |
| TAGAGGTTAGGAAGGTTGTA+TGG | 0.462978 | 4:+64965359 | None:intergenic |
| CATTGAAGTCATCAGAGCTT+GGG | 0.467422 | 4:-64964344 | MsG0480021836.01.T01:CDS |
| GTTGATAGCAATCCTTCCTC+TGG | 0.471116 | 4:-64965608 | MsG0480021836.01.T01:CDS |
| GGGTTGCCAAGGATACTAGA+AGG | 0.472607 | 4:+64964591 | None:intergenic |
| TCAACCTGTTGGGCAGTTCA+AGG | 0.473546 | 4:-64965453 | MsG0480021836.01.T01:CDS |
| TTCGAAGGAATTTCTGCGCT+GGG | 0.475576 | 4:-64965228 | MsG0480021836.01.T01:CDS |
| AACATAATTATTAGCAAGAA+GGG | 0.476139 | 4:+64965283 | None:intergenic |
| CACACCAGGGTTTAGAAAGA+TGG | 0.478975 | 4:-64964802 | MsG0480021836.01.T01:CDS |
| AGGTGCATTTCCATCTGGGT+TGG | 0.483616 | 4:+64965562 | None:intergenic |
| TTTGGGAAACTCAACCTGTT+GGG | 0.485400 | 4:-64965463 | MsG0480021836.01.T01:CDS |
| CAGTATTGGCAAGTTGCTAC+TGG | 0.490516 | 4:+64964936 | None:intergenic |
| TCAAAGATCTGTGCCAGTAT+TGG | 0.491976 | 4:+64964922 | None:intergenic |
| GTCACCTCTTTGATCATGAC+AGG | 0.495174 | 4:+64965023 | None:intergenic |
| GTAACCCATTCATAGAGGTT+AGG | 0.503092 | 4:+64965347 | None:intergenic |
| CATTCATCAGCTGAAGCAAA+GGG | 0.503326 | 4:+64964514 | None:intergenic |
| GGTGACCAGAAGGGTGCACT+TGG | 0.504257 | 4:-64965006 | MsG0480021836.01.T01:CDS |
| TTGAGTAATTTGGGTTGCCA+AGG | 0.505565 | 4:+64964580 | None:intergenic |
| ATGATGTTCCTGCGGTTACA+AGG | 0.508314 | 4:-64964773 | MsG0480021836.01.T01:CDS |
| CCTTCCTAACCTCTATGAAT+GGG | 0.513056 | 4:-64965351 | MsG0480021836.01.T01:CDS |
| GGAGCATTGGCTTCTTCCTA+GGG | 0.513324 | 4:-64964691 | MsG0480021836.01.T01:CDS |
| GCATTGAAGTCATCAGAGCT+TGG | 0.516250 | 4:-64964345 | MsG0480021836.01.T01:CDS |
| ATTCGAAGGAATTTCTGCGC+TGG | 0.519044 | 4:-64965229 | MsG0480021836.01.T01:CDS |
| CTCCGGGCTACTTCACAGCT+TGG | 0.520105 | 4:-64965196 | MsG0480021836.01.T01:CDS |
| TCACGGACTCGAATTCGGGC+AGG | 0.527541 | 4:+64965116 | None:intergenic |
| CCCATTCATAGAGGTTAGGA+AGG | 0.528278 | 4:+64965351 | None:intergenic |
| TGCTGAAAGTGATCTTGCAT+TGG | 0.528701 | 4:-64965540 | MsG0480021836.01.T01:CDS |
| ACGAAAATGATGTGGAGCAT+TGG | 0.530628 | 4:-64964704 | MsG0480021836.01.T01:CDS |
| TGGCAAGTTGCTACTGGTGT+AGG | 0.531802 | 4:+64964942 | None:intergenic |
| CATGACAGGAGCAAGCCTCT+TGG | 0.536419 | 4:+64965037 | None:intergenic |
| TAATTGATGTCGGTTTCTCT+CGG | 0.541266 | 4:-64964887 | MsG0480021836.01.T01:CDS |
| ACTTCAATGCATGCCTTACT+CGG | 0.542030 | 4:+64964358 | None:intergenic |
| GAAGTAGCCCGGAGGTTGCA+GGG | 0.543684 | 4:+64965205 | None:intergenic |
| TCATTCATCAGCTGAAGCAA+AGG | 0.547013 | 4:+64964513 | None:intergenic |
| ATTTCCATCTTTCTAAACCC+TGG | 0.548222 | 4:+64964798 | None:intergenic |
| CACGGACTCGAATTCGGGCA+GGG | 0.550332 | 4:+64965117 | None:intergenic |
| AAGAATCACTCCTGCTGTGT+AGG | 0.552278 | 4:+64964965 | None:intergenic |
| GATGTCGGTTTCTCTCGGCT+CGG | 0.552576 | 4:-64964882 | MsG0480021836.01.T01:CDS |
| TGCCAAGCTGTGAAGTAGCC+CGG | 0.554188 | 4:+64965194 | None:intergenic |
| CTAATTAGCCTTGTAACCGC+AGG | 0.559185 | 4:+64964765 | None:intergenic |
| CCAGAATCAACAGTCACACC+AGG | 0.560206 | 4:-64964816 | MsG0480021836.01.T01:CDS |
| TTGTAACCGCAGGAACATCA+TGG | 0.561294 | 4:+64964775 | None:intergenic |
| CCCAAGAAACTAATTGATGT+CGG | 0.561835 | 4:-64964897 | MsG0480021836.01.T01:CDS |
| ATAGGACCTTCAGGCAAAGT+GGG | 0.564234 | 4:+64965419 | None:intergenic |
| TGGCAGGCTGCCTACACAGC+AGG | 0.566798 | 4:-64964975 | MsG0480021836.01.T01:CDS |
| CTATCGACAACATTCTCCCT+AGG | 0.573804 | 4:+64964675 | None:intergenic |
| TGATCAAAGAGGTGACCAGA+AGG | 0.575360 | 4:-64965016 | MsG0480021836.01.T01:CDS |
| AATGCAAGATCACTTTCAGC+AGG | 0.575390 | 4:+64965542 | None:intergenic |
| CACAAGTAACCCATTCATAG+AGG | 0.576099 | 4:+64965342 | None:intergenic |
| ACTCAAAATCCCAACCCAGA+TGG | 0.582100 | 4:-64965572 | MsG0480021836.01.T01:CDS |
| CTGAAGTTTGGACCAGGTGA+TGG | 0.583002 | 4:-64964408 | MsG0480021836.01.T01:CDS |
| GTTTAGGTTTAACTATTCGA+AGG | 0.584434 | 4:-64965243 | MsG0480021836.01.T01:CDS |
| GATAGGACCTTCAGGCAAAG+TGG | 0.591235 | 4:+64965418 | None:intergenic |
| GCACTTGGAGAATATATGGC+AGG | 0.591925 | 4:-64964991 | MsG0480021836.01.T01:CDS |
| GGGAACCCCACTTTGCCTGA+AGG | 0.595352 | 4:-64965425 | MsG0480021836.01.T01:CDS |
| AAGGAACTGAAGTTTGGACC+AGG | 0.609351 | 4:-64964414 | MsG0480021836.01.T01:CDS |
| TCTTCAGGTGATCCAGAGGA+AGG | 0.613470 | 4:+64965596 | None:intergenic |
| TAATGAAGTTTACCATCACC+TGG | 0.622265 | 4:+64964396 | None:intergenic |
| CCATATTAACAACCTCATCA+CGG | 0.625479 | 4:+64965099 | None:intergenic |
| ACAAGAAGCTTCGAACCAAG+AGG | 0.628890 | 4:-64965052 | MsG0480021836.01.T01:CDS |
| GATCAAAGAGGTGACCAGAA+GGG | 0.633175 | 4:-64965015 | MsG0480021836.01.T01:CDS |
| CCGAATTCGAGTCCGTGATG+AGG | 0.640464 | 4:-64965111 | MsG0480021836.01.T01:CDS |
| AGTCTCTTCAGGTGATCCAG+AGG | 0.644950 | 4:+64965592 | None:intergenic |
| TGCTCCTGTCATGATCAAAG+AGG | 0.676350 | 4:-64965027 | MsG0480021836.01.T01:CDS |
| GGAAATCCATGATGTTCCTG+CGG | 0.677320 | 4:-64964781 | MsG0480021836.01.T01:CDS |
| TAGGACCTTCAGGCAAAGTG+GGG | 0.681811 | 4:+64965420 | None:intergenic |
| CAGAATCAACAGTCACACCA+GGG | 0.712272 | 4:-64964815 | MsG0480021836.01.T01:CDS |
| ATTCATCAGCTGAAGCAAAG+GGG | 0.718075 | 4:+64964515 | None:intergenic |
| TGAAAGTCCTGAAACTCACG+AGG | 0.726533 | 4:-64964643 | MsG0480021836.01.T01:CDS |
| CAAGCTGTGAAGTAGCCCGG+AGG | 0.761817 | 4:+64965197 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATAATTATTAGCAAGAA+GGG | + | Chr4:64964660-64964679 | None:intergenic | 20.0% |
| ! | CAACATAATTATTAGCAAGA+AGG | + | Chr4:64964661-64964680 | None:intergenic | 25.0% |
| ! | CTTTCAAAGTTGAGTAATTT+GGG | + | Chr4:64965372-64965391 | None:intergenic | 25.0% |
| ! | TTTCCCAAAATTTATGTCTT+TGG | + | Chr4:64964466-64964485 | None:intergenic | 25.0% |
| AAGATGATGAGAACATGTTT+AGG | - | Chr4:64964681-64964700 | MsG0480021836.01.T01:CDS | 30.0% | |
| GCTTTCAAAGTTGAGTAATT+TGG | + | Chr4:64965373-64965392 | None:intergenic | 30.0% | |
| TGTTAAAACTTCCAAGAAGA+TGG | - | Chr4:64964781-64964800 | MsG0480021836.01.T01:CDS | 30.0% | |
| ! | ACATCATTTTCGTCAAAATC+AGG | + | Chr4:64965229-64965248 | None:intergenic | 30.0% |
| ! | CGACCAAAGACATAAATTTT+GGG | - | Chr4:64964460-64964479 | MsG0480021836.01.T01:CDS | 30.0% |
| ! | GTTTAGGTTTAACTATTCGA+AGG | - | Chr4:64964697-64964716 | MsG0480021836.01.T01:CDS | 30.0% |
| ! | TCGACCAAAGACATAAATTT+TGG | - | Chr4:64964459-64964478 | MsG0480021836.01.T01:CDS | 30.0% |
| ! | TTATGATGTTTTCAACGCTT+TGG | - | Chr4:64965477-64965496 | MsG0480021836.01.T01:CDS | 30.0% |
| !! | TGATTTTGACGAAAATGATG+TGG | - | Chr4:64965228-64965247 | MsG0480021836.01.T01:CDS | 30.0% |
| AAGATGGTTGCCTTTATAAC+AGG | - | Chr4:64964797-64964816 | MsG0480021836.01.T01:CDS | 35.0% | |
| ATTTCCATCTTTCTAAACCC+TGG | + | Chr4:64965145-64965164 | None:intergenic | 35.0% | |
| CCATATTAACAACCTCATCA+CGG | + | Chr4:64964844-64964863 | None:intergenic | 35.0% | |
| CCCAAGAAACTAATTGATGT+CGG | - | Chr4:64965043-64965062 | MsG0480021836.01.T01:CDS | 35.0% | |
| GAATGTTGTCGATAGTTATC+TGG | - | Chr4:64965273-64965292 | MsG0480021836.01.T01:CDS | 35.0% | |
| GCAAAATGAAAGCTTCTTGA+AGG | - | Chr4:64965507-64965526 | MsG0480021836.01.T01:CDS | 35.0% | |
| TAATGAAGTTTACCATCACC+TGG | + | Chr4:64965547-64965566 | None:intergenic | 35.0% | |
| TATAAAGGCAACCATCTTCT+TGG | + | Chr4:64964795-64964814 | None:intergenic | 35.0% | |
| TTCTTGAAGGAACTGAAGTT+TGG | - | Chr4:64965520-64965539 | MsG0480021836.01.T01:CDS | 35.0% | |
| ! | ACCGACATCAATTAGTTTCT+TGG | + | Chr4:64965047-64965066 | None:intergenic | 35.0% |
| ! | CCGACATCAATTAGTTTCTT+GGG | + | Chr4:64965046-64965065 | None:intergenic | 35.0% |
| ! | TCCTGTTTTACCTCAGATAA+GGG | + | Chr4:64964560-64964579 | None:intergenic | 35.0% |
| ! | TTCCTGTTTTACCTCAGATA+AGG | + | Chr4:64964561-64964580 | None:intergenic | 35.0% |
| !! | TAATTGATGTCGGTTTCTCT+CGG | - | Chr4:64965053-64965072 | MsG0480021836.01.T01:CDS | 35.0% |
| AATGCAAGATCACTTTCAGC+AGG | + | Chr4:64964401-64964420 | None:intergenic | 40.0% | |
| ACACTTCCTTCTAGTATCCT+TGG | - | Chr4:64965343-64965362 | MsG0480021836.01.T01:CDS | 40.0% | |
| ACCTTCCTAACCTCTATGAA+TGG | - | Chr4:64964588-64964607 | MsG0480021836.01.T01:CDS | 40.0% | |
| ACGAAAATGATGTGGAGCAT+TGG | - | Chr4:64965236-64965255 | MsG0480021836.01.T01:CDS | 40.0% | |
| ACTTCAATGCATGCCTTACT+CGG | + | Chr4:64965585-64965604 | None:intergenic | 40.0% | |
| ATCTCTACAACTACCGAGTA+AGG | - | Chr4:64965569-64965588 | MsG0480021836.01.T01:CDS | 40.0% | |
| ATTCATCAGCTGAAGCAAAG+GGG | + | Chr4:64965428-64965447 | None:intergenic | 40.0% | |
| CACAAGTAACCCATTCATAG+AGG | + | Chr4:64964601-64964620 | None:intergenic | 40.0% | |
| CATTCATCAGCTGAAGCAAA+GGG | + | Chr4:64965429-64965448 | None:intergenic | 40.0% | |
| CATTGAAGTCATCAGAGCTT+GGG | - | Chr4:64965596-64965615 | MsG0480021836.01.T01:CDS | 40.0% | |
| CCGTGATGAGGTTGTTAATA+TGG | - | Chr4:64964841-64964860 | MsG0480021836.01.T01:CDS | 40.0% | |
| CCTTCCTAACCTCTATGAAT+GGG | - | Chr4:64964589-64964608 | MsG0480021836.01.T01:CDS | 40.0% | |
| GTAACCCATTCATAGAGGTT+AGG | + | Chr4:64964596-64964615 | None:intergenic | 40.0% | |
| TACTTCACAGCTTGGCATAT+TGG | - | Chr4:64964752-64964771 | MsG0480021836.01.T01:CDS | 40.0% | |
| TAGAGGTTAGGAAGGTTGTA+TGG | + | Chr4:64964584-64964603 | None:intergenic | 40.0% | |
| TCAAAGATCTGTGCCAGTAT+TGG | + | Chr4:64965021-64965040 | None:intergenic | 40.0% | |
| TCATTCATCAGCTGAAGCAA+AGG | + | Chr4:64965430-64965449 | None:intergenic | 40.0% | |
| TGCTGAAAGTGATCTTGCAT+TGG | - | Chr4:64964400-64964419 | MsG0480021836.01.T01:CDS | 40.0% | |
| TTGGGCAGTTCAAGGATATA+GGG | - | Chr4:64964495-64964514 | MsG0480021836.01.T01:CDS | 40.0% | |
| TTTGGGAAACTCAACCTGTT+GGG | - | Chr4:64964477-64964496 | MsG0480021836.01.T01:CDS | 40.0% | |
| ! | CCTGTTTTACCTCAGATAAG+GGG | + | Chr4:64964559-64964578 | None:intergenic | 40.0% |
| ! | CTGTTTTACCTCAGATAAGG+GGG | + | Chr4:64964558-64964577 | None:intergenic | 40.0% |
| !! | TTGAGTAATTTGGGTTGCCA+AGG | + | Chr4:64965363-64965382 | None:intergenic | 40.0% |
| !! | TTGGGATTTTGAGTCTCTTC+AGG | + | Chr4:64964362-64964381 | None:intergenic | 40.0% |
| !! | TTTTGGGAAACTCAACCTGT+TGG | - | Chr4:64964476-64964495 | MsG0480021836.01.T01:CDS | 40.0% |
| AAGAATCACTCCTGCTGTGT+AGG | + | Chr4:64964978-64964997 | None:intergenic | 45.0% | |
| AAGGAACTGAAGTTTGGACC+AGG | - | Chr4:64965526-64965545 | MsG0480021836.01.T01:CDS | 45.0% | |
| ACAAGAAGCTTCGAACCAAG+AGG | - | Chr4:64964888-64964907 | MsG0480021836.01.T01:CDS | 45.0% | |
| ACTCAAAATCCCAACCCAGA+TGG | - | Chr4:64964368-64964387 | MsG0480021836.01.T01:CDS | 45.0% | |
| ATAGGACCTTCAGGCAAAGT+GGG | + | Chr4:64964524-64964543 | None:intergenic | 45.0% | |
| ATATCCTTGAACTGCCCAAC+AGG | + | Chr4:64964494-64964513 | None:intergenic | 45.0% | |
| ATGATGTTCCTGCGGTTACA+AGG | - | Chr4:64965167-64965186 | MsG0480021836.01.T01:CDS | 45.0% | |
| ATTCGAAGGAATTTCTGCGC+TGG | - | Chr4:64964711-64964730 | MsG0480021836.01.T01:CDS | 45.0% | |
| CACACCAGGGTTTAGAAAGA+TGG | - | Chr4:64965138-64965157 | MsG0480021836.01.T01:CDS | 45.0% | |
| CAGAATCAACAGTCACACCA+GGG | - | Chr4:64965125-64965144 | MsG0480021836.01.T01:CDS | 45.0% | |
| CAGTAGCAACTTGCCAATAC+TGG | - | Chr4:64965005-64965024 | MsG0480021836.01.T01:CDS | 45.0% | |
| CCCATTCATAGAGGTTAGGA+AGG | + | Chr4:64964592-64964611 | None:intergenic | 45.0% | |
| CTATCGACAACATTCTCCCT+AGG | + | Chr4:64965268-64965287 | None:intergenic | 45.0% | |
| CTGCGGTTACAAGGCTAATT+AGG | - | Chr4:64965176-64965195 | MsG0480021836.01.T01:CDS | 45.0% | |
| GATCAAAGAGGTGACCAGAA+GGG | - | Chr4:64964925-64964944 | MsG0480021836.01.T01:CDS | 45.0% | |
| GCACTTGGAGAATATATGGC+AGG | - | Chr4:64964949-64964968 | MsG0480021836.01.T01:CDS | 45.0% | |
| GCATTGAAGTCATCAGAGCT+TGG | - | Chr4:64965595-64965614 | MsG0480021836.01.T01:CDS | 45.0% | |
| GGAAATCCATGATGTTCCTG+CGG | - | Chr4:64965159-64965178 | MsG0480021836.01.T01:CDS | 45.0% | |
| GGCAGGGATACCTGTTATAA+AGG | + | Chr4:64964810-64964829 | None:intergenic | 45.0% | |
| GGGTGCACTTGGAGAATATA+TGG | - | Chr4:64964945-64964964 | MsG0480021836.01.T01:CDS | 45.0% | |
| GTCACCTCTTTGATCATGAC+AGG | + | Chr4:64964920-64964939 | None:intergenic | 45.0% | |
| GTTGGGCAGTTCAAGGATAT+AGG | - | Chr4:64964494-64964513 | MsG0480021836.01.T01:CDS | 45.0% | |
| TGAAAGTCCTGAAACTCACG+AGG | - | Chr4:64965297-64965316 | MsG0480021836.01.T01:CDS | 45.0% | |
| TGATCAAAGAGGTGACCAGA+AGG | - | Chr4:64964924-64964943 | MsG0480021836.01.T01:CDS | 45.0% | |
| TGCTCCTGTCATGATCAAAG+AGG | - | Chr4:64964913-64964932 | MsG0480021836.01.T01:CDS | 45.0% | |
| TTCGAAGGAATTTCTGCGCT+GGG | - | Chr4:64964712-64964731 | MsG0480021836.01.T01:CDS | 45.0% | |
| TTGTAACCGCAGGAACATCA+TGG | + | Chr4:64965168-64965187 | None:intergenic | 45.0% | |
| TTTACCTCAGATAAGGGGGT+TGG | + | Chr4:64964554-64964573 | None:intergenic | 45.0% | |
| ! | CCCCTTATCTGAGGTAAAAC+AGG | - | Chr4:64964556-64964575 | MsG0480021836.01.T01:CDS | 45.0% |
| !! | CAGTATTGGCAAGTTGCTAC+TGG | + | Chr4:64965007-64965026 | None:intergenic | 45.0% |
| !! | CTAATTAGCCTTGTAACCGC+AGG | + | Chr4:64965178-64965197 | None:intergenic | 45.0% |
| !! | GTTGATAGCAATCCTTCCTC+TGG | - | Chr4:64964332-64964351 | MsG0480021836.01.T01:CDS | 45.0% |
| AGGTGCATTTCCATCTGGGT+TGG | + | Chr4:64964381-64964400 | None:intergenic | 50.0% | |
| AGTCTCTTCAGGTGATCCAG+AGG | + | Chr4:64964351-64964370 | None:intergenic | 50.0% | |
| ATTCTCCAAGTGCACCCTTC+TGG | + | Chr4:64964942-64964961 | None:intergenic | 50.0% | |
| CAGCAGGTGCATTTCCATCT+GGG | + | Chr4:64964385-64964404 | None:intergenic | 50.0% | |
| CCAGAATCAACAGTCACACC+AGG | - | Chr4:64965124-64965143 | MsG0480021836.01.T01:CDS | 50.0% | |
| CCTCATCACGGACTCGAATT+CGG | + | Chr4:64964832-64964851 | None:intergenic | 50.0% | |
| CTCATCACGGACTCGAATTC+GGG | + | Chr4:64964831-64964850 | None:intergenic | 50.0% | |
| CTGAAGTTTGGACCAGGTGA+TGG | - | Chr4:64965532-64965551 | MsG0480021836.01.T01:CDS | 50.0% | |
| GATAGGACCTTCAGGCAAAG+TGG | + | Chr4:64964525-64964544 | None:intergenic | 50.0% | |
| GGGTTGCCAAGGATACTAGA+AGG | + | Chr4:64965352-64965371 | None:intergenic | 50.0% | |
| GGTGCATTTCCATCTGGGTT+GGG | + | Chr4:64964380-64964399 | None:intergenic | 50.0% | |
| TAGGACCTTCAGGCAAAGTG+GGG | + | Chr4:64964523-64964542 | None:intergenic | 50.0% | |
| TCAACCTGTTGGGCAGTTCA+AGG | - | Chr4:64964487-64964506 | MsG0480021836.01.T01:CDS | 50.0% | |
| TCAGCAGGTGCATTTCCATC+TGG | + | Chr4:64964386-64964405 | None:intergenic | 50.0% | |
| TCAGTGACCTCGTGAGTTTC+AGG | + | Chr4:64965307-64965326 | None:intergenic | 50.0% | |
| TCTTCAGGTGATCCAGAGGA+AGG | + | Chr4:64964347-64964366 | None:intergenic | 50.0% | |
| TGGCAAGTTGCTACTGGTGT+AGG | + | Chr4:64965001-64965020 | None:intergenic | 50.0% | |
| !! | CCTGGTGTGACTGTTGATTC+TGG | + | Chr4:64965127-64965146 | None:intergenic | 50.0% |
| !! | GGAGCATTGGCTTCTTCCTA+GGG | - | Chr4:64965249-64965268 | MsG0480021836.01.T01:CDS | 50.0% |
| !! | TGGAGCATTGGCTTCTTCCT+AGG | - | Chr4:64965248-64965267 | MsG0480021836.01.T01:CDS | 50.0% |
| ACCACCAACCCCCTTATCTG+AGG | - | Chr4:64964547-64964566 | MsG0480021836.01.T01:CDS | 55.0% | |
| ACCTCAGATAAGGGGGTTGG+TGG | + | Chr4:64964551-64964570 | None:intergenic | 55.0% | |
| CATGACAGGAGCAAGCCTCT+TGG | + | Chr4:64964906-64964925 | None:intergenic | 55.0% | |
| CCGAATTCGAGTCCGTGATG+AGG | - | Chr4:64964829-64964848 | MsG0480021836.01.T01:CDS | 55.0% | |
| GGTGGTTCGATAGGACCTTC+AGG | + | Chr4:64964533-64964552 | None:intergenic | 55.0% | |
| TGCCAAGCTGTGAAGTAGCC+CGG | + | Chr4:64964749-64964768 | None:intergenic | 55.0% | |
| !! | AAGGGGGTTGGTGGTTCGAT+AGG | + | Chr4:64964542-64964561 | None:intergenic | 55.0% |
| !! | GATGTCGGTTTCTCTCGGCT+CGG | - | Chr4:64965058-64965077 | MsG0480021836.01.T01:CDS | 55.0% |
| CAAGCTGTGAAGTAGCCCGG+AGG | + | Chr4:64964746-64964765 | None:intergenic | 60.0% | |
| CACGGACTCGAATTCGGGCA+GGG | + | Chr4:64964826-64964845 | None:intergenic | 60.0% | |
| CTCCGGGCTACTTCACAGCT+TGG | - | Chr4:64964744-64964763 | MsG0480021836.01.T01:CDS | 60.0% | |
| GAAGTAGCCCGGAGGTTGCA+GGG | + | Chr4:64964738-64964757 | None:intergenic | 60.0% | |
| GGGAACCCCACTTTGCCTGA+AGG | - | Chr4:64964515-64964534 | MsG0480021836.01.T01:CDS | 60.0% | |
| TCACGGACTCGAATTCGGGC+AGG | + | Chr4:64964827-64964846 | None:intergenic | 60.0% | |
| TGAAGTAGCCCGGAGGTTGC+AGG | + | Chr4:64964739-64964758 | None:intergenic | 60.0% | |
| ! | GGTGACCAGAAGGGTGCACT+TGG | - | Chr4:64964934-64964953 | MsG0480021836.01.T01:CDS | 60.0% |
| !! | GTTTCTCTCGGCTCGGTGCT+CGG | - | Chr4:64965065-64965084 | MsG0480021836.01.T01:CDS | 60.0% |
| TGGCAGGCTGCCTACACAGC+AGG | - | Chr4:64964965-64964984 | MsG0480021836.01.T01:CDS | 65.0% | |
| CGCTGGGCCCTGCAACCTCC+GGG | - | Chr4:64964728-64964747 | MsG0480021836.01.T01:CDS | 75.0% | |
| GCGCTGGGCCCTGCAACCTC+CGG | - | Chr4:64964727-64964746 | MsG0480021836.01.T01:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 64964329 | 64965633 | 64964329 | ID=MsG0480021836.01;Name=MsG0480021836.01 |
| Chr4 | mRNA | 64964329 | 64965633 | 64964329 | ID=MsG0480021836.01.T01;Parent=MsG0480021836.01;Name=MsG0480021836.01.T01;_AED=0.39;_eAED=0.39;_QI=0|-1|0|1|-1|1|1|0|434 |
| Chr4 | exon | 64964329 | 64965633 | 64964329 | ID=MsG0480021836.01.T01:exon:7194;Parent=MsG0480021836.01.T01 |
| Chr4 | CDS | 64964329 | 64965633 | 64964329 | ID=MsG0480021836.01.T01:cds;Parent=MsG0480021836.01.T01 |
| Gene Sequence |
| Protein sequence |
