AlfalfaGEDB | MsG0780040553.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040553.01

KEGG: -
GO: GO:0046983
PFAM: PF00010

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040553.01.T01	KEH23663.1	90.291	309	21	3	1	302	1	307	0	561

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040553.01.T01	Q66GR3	49.345	229	97	6	83	302	125	343	1.40E-44	158

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040553.01.T01	A0A072U3D5	90.291	309	21	3	1	302	1	307	0.0	561

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048889.01	MsG0780040553.01	0.821444	4.023810e-53	3.274181e-50
MsG0180000367.01	MsG0780040553.01	0.800182	1.625310e-48	7.518652e-46
MsG0180000399.01	MsG0780040553.01	0.806846	6.745714e-50	3.700055e-47
MsG0180000551.01	MsG0780040553.01	0.805907	1.064203e-49	5.698472e-47
MsG0180000552.01	MsG0780040553.01	0.810853	9.377700e-51	5.715906e-48
MsG0180001108.01	MsG0780040553.01	0.837035	6.589578e-57	8.455136e-54
MsG0180001513.01	MsG0780040553.01	0.827399	1.598515e-54	1.541636e-51
MsG0180001802.01	MsG0780040553.01	0.805306	1.422865e-49	7.502038e-47
MsG0180002935.01	MsG0780040553.01	0.841854	3.691644e-58	5.495166e-55
MsG0180003375.01	MsG0780040553.01	0.808425	3.116427e-50	1.781355e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040553.01.T01	MTR_7g092540	90.291	309	21	3	1	302	1	307	0.0	561
MsG0780040553.01.T01	MTR_7g092540	89.610	308	23	3	1	301	1	306	0.0	558
MsG0780040553.01.T01	MTR_1g052470	46.832	363	121	10	4	301	6	361	1.44e-78	244
MsG0780040553.01.T01	MTR_1g052470	42.271	317	111	10	4	255	6	315	1.22e-49	167
MsG0780040553.01.T01	MTR_2g098310	42.353	255	96	9	82	301	157	395	6.22e-45	157
MsG0780040553.01.T01	MTR_6g052280	85.882	85	12	0	197	281	13	97	1.71e-44	148
MsG0780040553.01.T01	MTR_2g098310	42.353	255	96	9	82	301	157	395	1.94e-44	156
MsG0780040553.01.T01	MTR_4g065870	38.400	250	121	6	80	301	174	418	7.20e-43	152
MsG0780040553.01.T01	MTR_4g065870	38.306	248	120	6	80	299	174	416	3.23e-42	150
MsG0780040553.01.T01	MTR_3g028520	39.823	226	119	4	87	301	166	385	2.25e-39	142

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040553.01.T01	AT2G42280	49.345	229	97	6	83	302	125	343	1.43e-45	158
MsG0780040553.01.T01	AT2G42280	49.339	227	96	6	83	300	125	341	5.78e-44	154
MsG0780040553.01.T01	AT1G51140	59.091	110	38	3	192	301	265	367	6.20e-35	130
MsG0780040553.01.T01	AT2G43140	61.458	96	36	1	207	301	102	197	8.80e-33	120
MsG0780040553.01.T01	AT2G43140	61.458	96	36	1	207	301	199	294	4.74e-32	121
MsG0780040553.01.T01	AT1G05805	61.053	95	35	2	208	301	253	346	9.35e-29	113
MsG0780040553.01.T01	AT1G35460	69.444	72	22	0	230	301	173	244	2.16e-28	110
MsG0780040553.01.T01	AT4G09180	65.823	79	25	1	224	302	172	248	4.63e-27	107
MsG0780040553.01.T01	AT1G35460	76.596	47	11	0	230	276	173	219	2.22e-18	82.8
MsG0780040553.01.T01	AT2G24260	53.333	75	34	1	228	302	25	98	1.76e-16	77.8

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Find 58 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAGGAGTGATGGCAT+TGG	0.578334	7:+79135369	MsG0780040553.01.T01:CDS
AAACGAAGCAACCTTGAATT+TGG	0.214893	7:-79134195	None:intergenic
AAAGGAGATGATGTTGTTGT+TGG	0.459546	7:-79134454	None:intergenic
AAAGGTGTTGAAAACTATGA+TGG	0.487777	7:+79135237	MsG0780040553.01.T01:CDS
AACAAAACCAACCAAATTCA+AGG	0.457834	7:+79134184	MsG0780040553.01.T01:CDS
AACAACAACATCATCTCCTT+TGG	0.393746	7:+79134456	MsG0780040553.01.T01:CDS
AACATATTGAACAATCAAAT+TGG	0.290694	7:+79135297	MsG0780040553.01.T01:CDS
AACATCATCTCCTTTGGAAA+TGG	0.414195	7:+79134462	MsG0780040553.01.T01:CDS
AACTCTAAAACGAGGAGTGA+TGG	0.547308	7:+79135363	MsG0780040553.01.T01:CDS
AAGACAAGGAGGTAGCAATG+AGG	0.720936	7:+79135413	MsG0780040553.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAAACCAACCAAATTCA+AGG	+	Chr7:79134184-79134203	MsG0780040553.01.T01:CDS	30.0%
AAGTTAACCTGTTATATACC+TGG	-	Chr7:79135482-79135501	None:intergenic	30.0%
AAGTTATTTATGTACAAGGG+AGG	+	Chr7:79134981-79135000	MsG0780040553.01.T01:intron	30.0%
AATGAGGATGCTCAATATTA+TGG	+	Chr7:79135429-79135448	MsG0780040553.01.T01:CDS	30.0%
AATTGCGAATCAGCAAAATT+AGG	-	Chr7:79135539-79135558	None:intergenic	30.0%
ATTCTGACCTTATCAATGTT+TGG	-	Chr7:79135798-79135817	None:intergenic	30.0%
CATTTATGATTCTAATGACC+AGG	+	Chr7:79135461-79135480	MsG0780040553.01.T01:CDS	30.0%
CTAATGTGATTCATATTGCT+AGG	-	Chr7:79135155-79135174	None:intergenic	30.0%
GATTCAAATCATGAGATAGT+AGG	+	Chr7:79135069-79135088	MsG0780040553.01.T01:intron	30.0%
GTTATGTGATAACATTCTCA+AGG	-	Chr7:79135346-79135365	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	79134153	79135986	79134153	ID=MsG0780040553.01;Name=MsG0780040553.01
Chr7	mRNA	79134153	79135986	79134153	ID=MsG0780040553.01.T01;Parent=MsG0780040553.01;Name=MsG0780040553.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|0\|0\|1\|1\|1\|4\|0\|302
Chr7	exon	79134153	79134483	79134153	ID=MsG0780040553.01.T01:exon:458;Parent=MsG0780040553.01.T01
Chr7	exon	79135223	79135482	79135223	ID=MsG0780040553.01.T01:exon:459;Parent=MsG0780040553.01.T01
Chr7	exon	79135573	79135809	79135573	ID=MsG0780040553.01.T01:exon:460;Parent=MsG0780040553.01.T01
Chr7	exon	79135906	79135986	79135906	ID=MsG0780040553.01.T01:exon:461;Parent=MsG0780040553.01.T01
Chr7	CDS	79134153	79134483	79134153	ID=MsG0780040553.01.T01:cds;Parent=MsG0780040553.01.T01
Chr7	CDS	79135223	79135482	79135223	ID=MsG0780040553.01.T01:cds;Parent=MsG0780040553.01.T01
Chr7	CDS	79135573	79135809	79135573	ID=MsG0780040553.01.T01:cds;Parent=MsG0780040553.01.T01
Chr7	CDS	79135906	79135986	79135906	ID=MsG0780040553.01.T01:cds;Parent=MsG0780040553.01.T01

Gene Sequence

>MsG0780040553.01.T01

ATGGATTTGAATTCTCATTATCAACAACTCCAACAAAACCAACCAAATTCAAGGTTGCTTCGTTTTCGTTCAAGTTTCAAACAAGCTGAAGGTTGTGCTACAAATTCTGGTGAAACTTCTTCATCTACCTTTAGAGAATTCATGGACCATAATCCTTTTAATCATAAAGGTGACAACAACAACAACGAGTCTTCATTATCTCAAAGACACATGAATTCTCAGCAGGGTTATAGAATGGATCAACACAAAGGTTTTTATACCAATCTTTTAAGACAGAGTGGTTCCCATGCTGGTCATTTCTCCAACAACAACATCATCTCCTTTGGAAATGGGTATGAATCTATGAAAGGTGTTGAAAACTATGATGGGGTGAATGACAGTGATGGTGAACTTACTCTATCTATGAACATATTGAACAATCAAATTGGCTTCTCACCAAGAAGTCCTTCTTCCTTGAGAATGTTATCACATAACTCTAAAACGAGGAGTGATGGCATTGGAACAACTAGCCGTGATGATCGAAGACAAGGAGGTAGCAATGAGGATGCTCAATATTATGGTCATAAATTCATTTATGATTCTAATGACCAGAACGTAGGGGTACGAAATCAAGTTGATACACTATCACATCACTTGAGTTTGCCAAGAAAATCATCAGAAATGTTTATTGTGGAGAATTTGGTCCAGTTTCCAGATTCTGTTCCGAGCAGCATCAGAGCAAAGAGAGGCTTTGCAACACATCCTAGAAGCCTTGCCGAAAGGGTAAGAAGAACTCGGATAAGTGAACGAATGAGAAAATTGCAAGAGGTTGTTCCAAACATTGATAAGCAAACTTGCACATCAGAAATGTTAGACTTGGCTGTAGAGTACATTAAAGATCTTCAAAAACAATTAAAGGTACTTAATTAA

Protein sequence

>MsG0780040553.01.T01

MDLNSHYQQLQQNQPNSRLLRFRSSFKQAEGCATNSGETSSSTFREFMDHNPFNHKGDNNNNESSLSQRHMNSQQGYRMDQHKGFYTNLLRQSGSHAGHFSNNNIISFGNGYESMKGVENYDGVNDSDGELTLSMNILNNQIGFSPRSPSSLRMLSHNSKTRSDGIGTTSRDDRRQGGSNEDAQYYGHKFIYDSNDQNVGVRNQVDTLSHHLSLPRKSSEMFIVENLVQFPDSVPSSIRAKRGFATHPRSLAERVRRTRISERMRKLQEVVPNIDKQTCTSEMLDLAVEYIKDLQKQLKVLN*