AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040587.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040587.01.T01 MTR_7g093280 95.181 83 4 0 1 83 151 233 2.55e-53 167
MsG0780040587.01.T01 MTR_7g093280 100.000 79 0 0 1 79 151 229 2.35e-52 165
MsG0780040587.01.T01 MTR_7g093280 100.000 79 0 0 1 79 151 229 3.48e-52 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040587.01.T01 AT2G42070 71.910 89 23 1 2 88 164 252 3.83e-38 129
MsG0780040587.01.T01 AT2G42070 71.910 89 23 1 2 88 164 252 6.84e-38 129

Find 81 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGACCATGTTTACAATTT+TGG 0.100578 7:-79561525 None:intergenic
GACGCTTCCCGCTGGTTATT+TGG 0.152815 7:+79559794 MsG0780040587.01.T01:five_prime_UTR
CAGTTGGATATTCCTTTAAT+TGG 0.176645 7:+79559903 MsG0780040587.01.T01:CDS
CCCGCTGGTTATTTGGAAAT+TGG 0.192951 7:+79559801 MsG0780040587.01.T01:five_prime_UTR
GAAGGAATAGGATGTGAAAT+TGG 0.195226 7:-79557979 None:intergenic
GTCCTTACTTGGCCAATTAA+AGG 0.212118 7:-79559915 None:intergenic
AAAGAGACATGTTTCGATTC+AGG 0.244577 7:+79561356 MsG0780040587.01.T01:three_prime_UTR
TCTTGGGTTCTTAGTTTGAT+AGG 0.251738 7:+79561449 MsG0780040587.01.T01:three_prime_UTR
AGTTGGCATTCTGATGATTC+TGG 0.253982 7:-79560084 None:intergenic
CCTGAACACATTACTACTTT+AGG 0.263485 7:+79561385 MsG0780040587.01.T01:three_prime_UTR
TTCTGAACATGGCATGATTT+TGG 0.267570 7:+79559510 MsG0780040587.01.T01:intron
GTGTTTGATGCAATTTATTA+TGG 0.270271 7:+79561414 MsG0780040587.01.T01:three_prime_UTR
TTCAACCATCTCACGGTCTT+TGG 0.277844 7:+79559600 MsG0780040587.01.T01:five_prime_UTR
TGCAAAGACCTGAGCATTGC+TGG 0.291496 7:+79561308 MsG0780040587.01.T01:exon
GTGCGAGGTGTGGTGGTGGA+TGG 0.324650 7:-79558015 None:intergenic
AAGGAATAGGATGTGAAATT+GGG 0.344694 7:-79557978 None:intergenic
CAGAAGATACAGTAATCTTC+AGG 0.353183 7:-79561287 None:intergenic
GAAAAGGACAGAGAATTAAA+AGG 0.367378 7:-79560126 None:intergenic
AATGGTGGTTACCTTGAGTT+TGG 0.372798 7:+79560152 MsG0780040587.01.T01:CDS
GAGACTTGTGTGCGGCCTAA+TGG 0.388438 7:+79561497 MsG0780040587.01.T01:three_prime_UTR
AATTTCTCCCTTTGCTCAGT+TGG 0.422669 7:+79559887 MsG0780040587.01.T01:CDS
CCTAAAGTAGTAATGTGTTC+AGG 0.425412 7:-79561385 None:intergenic
TGCGAGGTGTGGTGGTGGAT+GGG 0.430846 7:-79558014 None:intergenic
AAGGAGTTGAGAGAAGGAAT+AGG 0.435024 7:-79557991 None:intergenic
TTGCAGATTGCAGTAAAGTC+TGG 0.436893 7:+79561222 MsG0780040587.01.T01:intron
AGGTGTGGTGGTGGATGGGA+AGG 0.448620 7:-79558010 None:intergenic
GGTAACCACCATTGATGAAA+AGG 0.456230 7:-79560142 None:intergenic
CAGCTATGGAAGGTGCTGTA+AGG 0.456597 7:+79559829 MsG0780040587.01.T01:exon
TGATGAAATTGAAATTGAAA+TGG 0.459885 7:-79557950 None:intergenic
ATGGCCAGCAAATTCCTCTT+GGG 0.461782 7:+79561433 MsG0780040587.01.T01:three_prime_UTR
TATGGCCAGCAAATTCCTCT+TGG 0.464395 7:+79561432 MsG0780040587.01.T01:three_prime_UTR
GGAATATCCAACTGAGCAAA+GGG 0.472709 7:-79559894 None:intergenic
GACTATATATGTACACTTTG+TGG 0.473013 7:+79558319 MsG0780040587.01.T01:five_prime_UTR
AGAACCCAAGAGGAATTTGC+TGG 0.484958 7:-79561437 None:intergenic
GAAATTGAAATGGAAGTTCG+AGG 0.484982 7:-79557940 None:intergenic
CATTCTGATGATTCTGGACC+AGG 0.487364 7:-79560078 None:intergenic
TTGGCTGGCAAAGTAGGTAG+TGG 0.491407 7:+79559529 MsG0780040587.01.T01:five_prime_UTR
GTGGGTGCGAGGTGTGGTGG+TGG 0.494698 7:-79558019 None:intergenic
GAATGATGGTGAAGGTATCC+AGG 0.498482 7:+79557876 MsG0780040587.01.T01:five_prime_UTR
AGGTTTAAGAGTCCAGCGTT+GGG 0.500747 7:-79557920 None:intergenic
AATTTAAGCCAGCAATGCTC+AGG 0.508204 7:-79561316 None:intergenic
CAAATCCGCATAGCTGAACC+TGG 0.515382 7:-79557894 None:intergenic
CGAGTGGGTGCGAGGTGTGG+TGG 0.520172 7:-79558022 None:intergenic
ACGAAACGGTGCGAATCGAG+TGG 0.531829 7:-79558038 None:intergenic
TCCAATTTCCAAATAACCAG+CGG 0.535511 7:-79559802 None:intergenic
AGGAATATCCAACTGAGCAA+AGG 0.538558 7:-79559895 None:intergenic
TGGCTGGCAAAGTAGGTAGT+GGG 0.541679 7:+79559530 MsG0780040587.01.T01:five_prime_UTR
TTCCAATCGAAGAAGAATGA+TGG 0.542823 7:+79557862 None:intergenic
GAATATTCCTCTTGCAAAGG+AGG 0.546788 7:-79559580 None:intergenic
GCGGATTTGTTACCCAACGC+TGG 0.555842 7:+79557908 MsG0780040587.01.T01:five_prime_UTR
GATGGGAAGGAGTTGAGAGA+AGG 0.556345 7:-79557997 None:intergenic
AGCTATGGAAGGTGCTGTAA+GGG 0.559111 7:+79559830 MsG0780040587.01.T01:exon
AGGAATAGGATGTGAAATTG+GGG 0.566003 7:-79557977 None:intergenic
GAGGTTTAAGAGTCCAGCGT+TGG 0.567692 7:-79557921 None:intergenic
GTTGAATATTCCTCTTGCAA+AGG 0.568528 7:-79559583 None:intergenic
CCAATTTCCAAATAACCAGC+GGG 0.580189 7:-79559801 None:intergenic
CATCGCCAAAATTGTAAACA+TGG 0.580235 7:+79561520 MsG0780040587.01.T01:three_prime_UTR
TCAACAAGGACGCTTCCCGC+TGG 0.588753 7:+79559786 MsG0780040587.01.T01:intron
GGAAATTGGAGAGTCAGCTA+TGG 0.592311 7:+79559815 MsG0780040587.01.T01:exon
ACGAAACACGATATACCTGA+TGG 0.597176 7:+79558283 MsG0780040587.01.T01:five_prime_UTR
GTGCGAATCGAGTGGGTGCG+AGG 0.597849 7:-79558030 None:intergenic
CCTTGTTATCGTGTTCAATG+AGG 0.599296 7:-79559556 None:intergenic
AATCGAGTGGGTGCGAGGTG+TGG 0.601485 7:-79558025 None:intergenic
AGGAATATTCAACCATCTCA+CGG 0.604922 7:+79559593 MsG0780040587.01.T01:five_prime_UTR
TCTGAAACATACCAAACTCA+AGG 0.612624 7:-79560163 None:intergenic
AGCGATGAGGAAGCACGAAA+CGG 0.613658 7:-79558052 None:intergenic
AAGGTGCTGTAAGGGAAACA+AGG 0.616722 7:+79559838 MsG0780040587.01.T01:CDS
CAAGTTCTGTCAGTGTGTGG+TGG 0.617368 7:+79558256 MsG0780040587.01.T01:five_prime_UTR
ACAAGGTCCTCCTTTGCAAG+AGG 0.629509 7:+79559573 MsG0780040587.01.T01:five_prime_UTR
TCGAAGAAGAATGATGGTGA+AGG 0.629797 7:+79557868 None:intergenic
CGAAACGGTGCGAATCGAGT+GGG 0.635940 7:-79558037 None:intergenic
CCTCATTGAACACGATAACA+AGG 0.636885 7:+79559556 MsG0780040587.01.T01:five_prime_UTR
ATTGGAGAGTCAGCTATGGA+AGG 0.642213 7:+79559819 MsG0780040587.01.T01:exon
TGCTGTAAGGGAAACAAGGG+AGG 0.645901 7:+79559842 MsG0780040587.01.T01:CDS
TCATACCAAAGACCGTGAGA+TGG 0.648933 7:-79559605 None:intergenic
TATCAAACTAAGAACCCAAG+AGG 0.651810 7:-79561447 None:intergenic
TACGGAAGATTGAAGCGATG+AGG 0.659781 7:-79558065 None:intergenic
TATCAAGTTCTGTCAGTGTG+TGG 0.661717 7:+79558253 MsG0780040587.01.T01:five_prime_UTR
AGGTGCTGTAAGGGAAACAA+GGG 0.683736 7:+79559839 MsG0780040587.01.T01:CDS
GGTATCCAGGTTCAGCTATG+CGG 0.694236 7:+79557889 MsG0780040587.01.T01:five_prime_UTR
GTAAGACTGAGACTTGTGTG+CGG 0.734708 7:+79561489 MsG0780040587.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAACAAAAGAATTAAAAT+TGG - Chr7:79558137-79558156 None:intergenic 10.0%
!! ATAACAAAAGAATTAAAATT+GGG - Chr7:79558136-79558155 None:intergenic 10.0%
!! TTTATTATAGTTATTATTGA+TGG + Chr7:79558201-79558220 MsG0780040587.01.T01:intron 10.0%
!!! TTATTATTTTTATCTACAAA+AGG - Chr7:79559218-79559237 None:intergenic 10.0%
!! AAATAATTAATACACTTCAA+AGG - Chr7:79560481-79560500 None:intergenic 15.0%
!! AATAATAAATGATATGACAA+CGG - Chr7:79559450-79559469 None:intergenic 15.0%
!! ATATGATATTACAGAATTAT+TGG - Chr7:79558103-79558122 None:intergenic 15.0%
!! CATTTATATATAATAGTTGT+TGG - Chr7:79559694-79559713 None:intergenic 15.0%
!! TATGATATTACAGAATTATT+GGG - Chr7:79558102-79558121 None:intergenic 15.0%
!! TTGAAGTGTATTAATTATTT+AGG + Chr7:79560481-79560500 MsG0780040587.01.T01:intron 15.0%
!!! AAAAAAAAACCTTTTGTTAA+TGG - Chr7:79560304-79560323 None:intergenic 15.0%
!!! AATAGCATCAATTTTATTTT+AGG + Chr7:79558170-79558189 MsG0780040587.01.T01:intron 15.0%
!!! ATTTTAAAATGTATTAGAAG+TGG + Chr7:79559085-79559104 MsG0780040587.01.T01:intron 15.0%
!!! CTTGTTATTTTTAAATGTTA+TGG + Chr7:79559051-79559070 MsG0780040587.01.T01:intron 15.0%
!! AAAGGTTATACTCTTAAATT+TGG + Chr7:79558724-79558743 MsG0780040587.01.T01:intron 20.0%
!! ATATATAATAGTTGTTGGAA+AGG - Chr7:79559689-79559708 None:intergenic 20.0%
!! ATGATATTACAGAATTATTG+GGG - Chr7:79558101-79558120 None:intergenic 20.0%
!! GCATACTATATAAATTAGTT+AGG + Chr7:79560692-79560711 MsG0780040587.01.T01:intron 20.0%
!! TGATGAAATTGAAATTGAAA+TGG - Chr7:79557953-79557972 None:intergenic 20.0%
!!! AATACTGTTTTTATGTGTTT+GGG + Chr7:79560722-79560741 MsG0780040587.01.T01:intron 20.0%
!!! AATTATTTAGGTTCCTTTTA+AGG + Chr7:79560493-79560512 MsG0780040587.01.T01:intron 20.0%
!!! AATTTAAAGCATGTTATATG+CGG - Chr7:79559302-79559321 None:intergenic 20.0%
!!! ATGATAATGCAAAACAAATA+AGG + Chr7:79559370-79559389 MsG0780040587.01.T01:intron 20.0%
!!! ATTATTTAGGTTCCTTTTAA+GGG + Chr7:79560494-79560513 MsG0780040587.01.T01:intron 20.0%
!!! GCTATGTTAATTTCATATTT+TGG + Chr7:79559761-79559780 MsG0780040587.01.T01:intron 20.0%
!!! TAATACTGTTTTTATGTGTT+TGG + Chr7:79560721-79560740 MsG0780040587.01.T01:intron 20.0%
!!! TTTTATTGGTATTTGTTGTT+AGG + Chr7:79560923-79560942 MsG0780040587.01.T01:intron 20.0%
!!! TTTTTAAATGATCTAAAGTC+TGG + Chr7:79558435-79558454 MsG0780040587.01.T01:intron 20.0%
! AAATAGCATTTCTAAACTAC+AGG - Chr7:79560817-79560836 None:intergenic 25.0%
! AACAAACAAAAGCAATTTCA+TGG - Chr7:79558647-79558666 None:intergenic 25.0%
! AACCGAACATACATAAATTA+AGG - Chr7:79560363-79560382 None:intergenic 25.0%
! AAGCTACTAAAAACTTTCTT+TGG - Chr7:79560845-79560864 None:intergenic 25.0%
! AATGAGTAATATATCTTCCA+AGG - Chr7:79558618-79558637 None:intergenic 25.0%
! AATGGTTCCATAATGAAATT+TGG - Chr7:79560286-79560305 None:intergenic 25.0%
! ACAAAAATCTTTCAGATCTT+GGG - Chr7:79558959-79558978 None:intergenic 25.0%
! ACCGAACATACATAAATTAA+GGG - Chr7:79560362-79560381 None:intergenic 25.0%
! AGCTACTAAAAACTTTCTTT+GGG - Chr7:79560844-79560863 None:intergenic 25.0%
! ATGGTTCCATAATGAAATTT+GGG - Chr7:79560285-79560304 None:intergenic 25.0%
! ATTATGGAACCATTAACAAA+AGG + Chr7:79560292-79560311 MsG0780040587.01.T01:intron 25.0%
! CAGTAGAAACAAAAATAAGT+CGG - Chr7:79558591-79558610 None:intergenic 25.0%
! CTAATTGTCTCTTAGAAATA+AGG - Chr7:79560413-79560432 None:intergenic 25.0%
! CTTCTTATTATCATTGTATC+TGG + Chr7:79559645-79559664 MsG0780040587.01.T01:intron 25.0%
! GTGTTTGATGCAATTTATTA+TGG + Chr7:79561414-79561433 MsG0780040587.01.T01:three_prime_UTR 25.0%
! TAAGTCCTAATTAAGCATAT+AGG + Chr7:79558358-79558377 MsG0780040587.01.T01:intron 25.0%
! TACAAAAATCTTTCAGATCT+TGG - Chr7:79558960-79558979 None:intergenic 25.0%
! TATACTCTTAAATTTGGATG+AGG + Chr7:79558730-79558749 MsG0780040587.01.T01:intron 25.0%
! TATCATCAAGTGAAAAAAGT+TGG - Chr7:79560104-79560123 None:intergenic 25.0%
! TCCCTTAATTTATGTATGTT+CGG + Chr7:79560358-79560377 MsG0780040587.01.T01:intron 25.0%
! TGAGATGTATCTCATTAATT+TGG - Chr7:79560586-79560605 None:intergenic 25.0%
!! AATGACCATGTTTACAATTT+TGG - Chr7:79561528-79561547 None:intergenic 25.0%
!! ACTTATGTTCTTACTCATTT+TGG + Chr7:79560896-79560915 MsG0780040587.01.T01:intron 25.0%
!! ATTTTGCTAACATTTATACC+AGG - Chr7:79560670-79560689 None:intergenic 25.0%
!! CTGAAAGATTTTTGTATGAT+TGG + Chr7:79558964-79558983 MsG0780040587.01.T01:intron 25.0%
!! GATTTTTGTATGATTGGATT+TGG + Chr7:79558970-79558989 MsG0780040587.01.T01:intron 25.0%
!! GCATATAACATGCTTTAAAT+TGG + Chr7:79559301-79559320 MsG0780040587.01.T01:intron 25.0%
!! TATAATCATATGCTTTTCTG+TGG + Chr7:79561079-79561098 MsG0780040587.01.T01:intron 25.0%
!! TATGATAGTTGATACTGAAA+TGG + Chr7:79559259-79559278 MsG0780040587.01.T01:intron 25.0%
!!! TTCATATTTTGGTATCAACA+AGG + Chr7:79559772-79559791 MsG0780040587.01.T01:intron 25.0%
AAAAGTCTTCCTACATTTAG+TGG - Chr7:79558419-79558438 None:intergenic 30.0%
AAAGTCTTCCTACATTTAGT+GGG - Chr7:79558418-79558437 None:intergenic 30.0%
AAGGAATAGGATGTGAAATT+GGG - Chr7:79557981-79558000 None:intergenic 30.0%
ACAGTATATTGAGGATATGA+AGG + Chr7:79560251-79560270 MsG0780040587.01.T01:intron 30.0%
AGACAATTAGAAAACTTCGT+AGG + Chr7:79560423-79560442 MsG0780040587.01.T01:intron 30.0%
AGGGAAAATATCATGTATGT+AGG - Chr7:79560343-79560362 None:intergenic 30.0%
ATGAGTAAGAACATAAGTCT+AGG - Chr7:79560894-79560913 None:intergenic 30.0%
ATGCAAAACAAATAAGGATC+TGG + Chr7:79559376-79559395 MsG0780040587.01.T01:intron 30.0%
CAGTTGGATATTCCTTTAAT+TGG + Chr7:79559903-79559922 MsG0780040587.01.T01:CDS 30.0%
CTTAATTAGGACTTAAGTGA+AGG - Chr7:79558353-79558372 None:intergenic 30.0%
CTTTGATGTGTGTTTCATTT+AGG + Chr7:79560545-79560564 MsG0780040587.01.T01:intron 30.0%
GAAAAGGACAGAGAATTAAA+AGG - Chr7:79560129-79560148 None:intergenic 30.0%
GACTATATATGTACACTTTG+TGG + Chr7:79558319-79558338 MsG0780040587.01.T01:five_prime_UTR 30.0%
TAAATATTGCAGTATAGCAC+CGG - Chr7:79561031-79561050 None:intergenic 30.0%
TATCTGGTTAGATACAGATT+AGG + Chr7:79559661-79559680 MsG0780040587.01.T01:intron 30.0%
TGATGGTAATTAACAATGCA+GGG + Chr7:79558218-79558237 MsG0780040587.01.T01:intron 30.0%
TTAAATGTTATGGCTTTCGT+TGG + Chr7:79559061-79559080 MsG0780040587.01.T01:intron 30.0%
TTCATATCCTCAATATACTG+TGG - Chr7:79560252-79560271 None:intergenic 30.0%
TTGAGCCTATATGCTTAATT+AGG - Chr7:79558366-79558385 None:intergenic 30.0%
TTTCCAAGTATACCCTTAAA+AGG - Chr7:79560509-79560528 None:intergenic 30.0%
! ATTTATGTATGTTCGGTTTG+AGG + Chr7:79560365-79560384 MsG0780040587.01.T01:intron 30.0%
! TGATTACTTTGTTCTGAACA+TGG + Chr7:79559499-79559518 MsG0780040587.01.T01:intron 30.0%
! TTGATGGTAATTAACAATGC+AGG + Chr7:79558217-79558236 MsG0780040587.01.T01:intron 30.0%
! TTTATGTATGTTCGGTTTGA+GGG + Chr7:79560366-79560385 MsG0780040587.01.T01:intron 30.0%
! TTTTGGATGTATGTATTCTC+TGG + Chr7:79559414-79559433 MsG0780040587.01.T01:intron 30.0%
!! ATGTTCTTACTCATTTTGGT+TGG + Chr7:79560900-79560919 MsG0780040587.01.T01:intron 30.0%
!! TTTTGAAAGATCGTGATAAC+AGG - Chr7:79561198-79561217 None:intergenic 30.0%
!!! CGACTTATTTTTGTTTCTAC+TGG + Chr7:79558589-79558608 MsG0780040587.01.T01:intron 30.0%
!!! CTCATTTTGGTTGGTTTTAT+TGG + Chr7:79560909-79560928 MsG0780040587.01.T01:intron 30.0%
!!! GGAGGAGTATCATATTTTTT+TGG + Chr7:79559397-79559416 MsG0780040587.01.T01:intron 30.0%
AAAGAGACATGTTTCGATTC+AGG + Chr7:79561356-79561375 MsG0780040587.01.T01:three_prime_UTR 35.0%
AAATATTGCAGTATAGCACC+GGG - Chr7:79561030-79561049 None:intergenic 35.0%
ACATCAGACACAATATGAGT+AGG - Chr7:79560217-79560236 None:intergenic 35.0%
ACATCTCAACTAGTTGGATT+TGG + Chr7:79560598-79560617 MsG0780040587.01.T01:intron 35.0%
ACCTTTAACCCACTAAATGT+AGG + Chr7:79558407-79558426 MsG0780040587.01.T01:intron 35.0%
ACGAATTATTCCAGGTCTTT+AGG - Chr7:79561141-79561160 None:intergenic 35.0%
AGGAATAGGATGTGAAATTG+GGG - Chr7:79557980-79557999 None:intergenic 35.0%
AGGAATATTCAACCATCTCA+CGG + Chr7:79559593-79559612 MsG0780040587.01.T01:five_prime_UTR 35.0%
AGGTAACACAAAAGAAGACA+GGG - Chr7:79560197-79560216 None:intergenic 35.0%
AGTTGGAATCCATTGAGAAA+AGG + Chr7:79559173-79559192 MsG0780040587.01.T01:intron 35.0%
ATCGAGTGTCTTATGAAAAG+AGG - Chr7:79559345-79559364 None:intergenic 35.0%
CAAAACAAATAAGGATCTGG+AGG + Chr7:79559379-79559398 MsG0780040587.01.T01:intron 35.0%
CAGAAGATACAGTAATCTTC+AGG - Chr7:79561290-79561309 None:intergenic 35.0%
CATCGCCAAAATTGTAAACA+TGG + Chr7:79561520-79561539 MsG0780040587.01.T01:three_prime_UTR 35.0%
CCACAAACATGTGATAATCA+AGG - Chr7:79560010-79560029 None:intergenic 35.0%
CCTAAAGTAGTAATGTGTTC+AGG - Chr7:79561388-79561407 None:intergenic 35.0%
CCTGAACACATTACTACTTT+AGG + Chr7:79561385-79561404 MsG0780040587.01.T01:three_prime_UTR 35.0%
CCTTGATTATCACATGTTTG+TGG + Chr7:79560007-79560026 MsG0780040587.01.T01:intron 35.0%
CGAATTATTCCAGGTCTTTA+GGG - Chr7:79561140-79561159 None:intergenic 35.0%
GAAATTGAAATGGAAGTTCG+AGG - Chr7:79557943-79557962 None:intergenic 35.0%
GAAGGAATAGGATGTGAAAT+TGG - Chr7:79557982-79558001 None:intergenic 35.0%
GAAGTATAGGTTTATCCACA+GGG - Chr7:79558934-79558953 None:intergenic 35.0%
GAATTATTCCAGGTCTTTAG+GGG - Chr7:79561139-79561158 None:intergenic 35.0%
GTTGAATATTCCTCTTGCAA+AGG - Chr7:79559586-79559605 None:intergenic 35.0%
TAGAAGTGGAGATTGAGAAA+AGG + Chr7:79559099-79559118 MsG0780040587.01.T01:intron 35.0%
TAGGTAACACAAAAGAAGAC+AGG - Chr7:79560198-79560217 None:intergenic 35.0%
TATATTGAGGATATGAAGGC+TGG + Chr7:79560255-79560274 MsG0780040587.01.T01:intron 35.0%
TATCAAACTAAGAACCCAAG+AGG - Chr7:79561450-79561469 None:intergenic 35.0%
TATTGGGGAGATAGAACTTA+CGG - Chr7:79558086-79558105 None:intergenic 35.0%
TCCAATTTCCAAATAACCAG+CGG - Chr7:79559805-79559824 None:intergenic 35.0%
TCTTAGAAATAAGGAGCAGA+GGG - Chr7:79560404-79560423 None:intergenic 35.0%
TGAAGTATAGGTTTATCCAC+AGG - Chr7:79558935-79558954 None:intergenic 35.0%
TGAGATACATCTCAACTAGT+TGG + Chr7:79560592-79560611 MsG0780040587.01.T01:intron 35.0%
TTCCTTTAATTGGCCAAGTA+AGG + Chr7:79559913-79559932 MsG0780040587.01.T01:intron 35.0%
! CTAGCATGTTGCTTATTGAT+TGG + Chr7:79561161-79561180 MsG0780040587.01.T01:intron 35.0%
! GTCTCTTTATCTTTTGACAG+TGG - Chr7:79561344-79561363 None:intergenic 35.0%
! TCTGAAACATACCAAACTCA+AGG - Chr7:79560166-79560185 None:intergenic 35.0%
! TCTTGGGTTCTTAGTTTGAT+AGG + Chr7:79561449-79561468 MsG0780040587.01.T01:three_prime_UTR 35.0%
! TCTTTAGGGGTAACAATGAA+TGG - Chr7:79561126-79561145 None:intergenic 35.0%
! TTCTCTGTCCTTTTCATCAA+TGG + Chr7:79560134-79560153 MsG0780040587.01.T01:CDS 35.0%
! TTCTGAACATGGCATGATTT+TGG + Chr7:79559510-79559529 MsG0780040587.01.T01:intron 35.0%
!! ATTGGTATTTGTTGTTAGGC+CGG + Chr7:79560927-79560946 MsG0780040587.01.T01:intron 35.0%
!! GTTCCTTTTAAGGGTATACT+TGG + Chr7:79560503-79560522 MsG0780040587.01.T01:intron 35.0%
!! TCCTACATTTAGTGGGTTAA+AGG - Chr7:79558411-79558430 None:intergenic 35.0%
!! TCTCATTTTTCTTCTCCATC+AGG - Chr7:79558301-79558320 None:intergenic 35.0%
AAAATCCATATCAGCCCATC+AGG - Chr7:79558537-79558556 None:intergenic 40.0%
AAGGAGTTGAGAGAAGGAAT+AGG - Chr7:79557994-79558013 None:intergenic 40.0%
AATGGTGGTTACCTTGAGTT+TGG + Chr7:79560152-79560171 MsG0780040587.01.T01:CDS 40.0%
AATTTAAGCCAGCAATGCTC+AGG - Chr7:79561319-79561338 None:intergenic 40.0%
AATTTCTCCCTTTGCTCAGT+TGG + Chr7:79559887-79559906 MsG0780040587.01.T01:CDS 40.0%
ACACATGAGCCATGATAAAC+AGG + Chr7:79560998-79561017 MsG0780040587.01.T01:intron 40.0%
ACGAAACACGATATACCTGA+TGG + Chr7:79558283-79558302 MsG0780040587.01.T01:five_prime_UTR 40.0%
ACTCTTGAACTACTTACAGC+AGG - Chr7:79558904-79558923 None:intergenic 40.0%
AGGAATATCCAACTGAGCAA+AGG - Chr7:79559898-79559917 None:intergenic 40.0%
AGTTGGCATTCTGATGATTC+TGG - Chr7:79560087-79560106 None:intergenic 40.0%
AGTTTCTTCCAGTCCTTACT+TGG - Chr7:79559929-79559948 None:intergenic 40.0%
ATGATAAACAGGTCAGTTCC+CGG + Chr7:79561009-79561028 MsG0780040587.01.T01:intron 40.0%
ATTCTGGACCAGGTGAAAAA+TGG - Chr7:79560071-79560090 None:intergenic 40.0%
CAATTGAAGTCATCTCTAGC+AGG + Chr7:79558870-79558889 MsG0780040587.01.T01:intron 40.0%
CATGCTAGACGAATTATTCC+AGG - Chr7:79561149-79561168 None:intergenic 40.0%
CCAATTTCCAAATAACCAGC+GGG - Chr7:79559804-79559823 None:intergenic 40.0%
CCTCATTGAACACGATAACA+AGG + Chr7:79559556-79559575 MsG0780040587.01.T01:five_prime_UTR 40.0%
CGTGATAACAGGCGTATTAT+AGG - Chr7:79561187-79561206 None:intergenic 40.0%
CTCTTAGAAATAAGGAGCAG+AGG - Chr7:79560405-79560424 None:intergenic 40.0%
CTGAAATGGATGTCGATGTT+AGG + Chr7:79559273-79559292 MsG0780040587.01.T01:intron 40.0%
GAATATTCCTCTTGCAAAGG+AGG - Chr7:79559583-79559602 None:intergenic 40.0%
GCATATAGGCTCAACACTAT+AGG + Chr7:79558372-79558391 MsG0780040587.01.T01:intron 40.0%
GGAATATCCAACTGAGCAAA+GGG - Chr7:79559897-79559916 None:intergenic 40.0%
GGCAAGCCCAAATTTCATTA+TGG + Chr7:79560276-79560295 MsG0780040587.01.T01:intron 40.0%
GGTAACCACCATTGATGAAA+AGG - Chr7:79560145-79560164 None:intergenic 40.0%
GTCCTTACTTGGCCAATTAA+AGG - Chr7:79559918-79559937 None:intergenic 40.0%
TATCAAGTTCTGTCAGTGTG+TGG + Chr7:79558253-79558272 MsG0780040587.01.T01:five_prime_UTR 40.0%
TTAATTGGCCAAGTAAGGAC+TGG + Chr7:79559918-79559937 MsG0780040587.01.T01:intron 40.0%
TTCTGGACCAGGTGAAAAAT+GGG - Chr7:79560070-79560089 None:intergenic 40.0%
TTGCAGATTGCAGTAAAGTC+TGG + Chr7:79561222-79561241 MsG0780040587.01.T01:intron 40.0%
! AATGGATTCCAACTCTTCCA+TGG - Chr7:79559167-79559186 None:intergenic 40.0%
! CCTTGTTATCGTGTTCAATG+AGG - Chr7:79559559-79559578 None:intergenic 40.0%
! CTCAACTAGTTGGATTTGGT+TGG + Chr7:79560602-79560621 MsG0780040587.01.T01:intron 40.0%
! GAAACGCTTCCTTTTCTCAA+TGG - Chr7:79559185-79559204 None:intergenic 40.0%
! GTCTGAGATCTAATTTGTCC+TGG + Chr7:79560649-79560668 MsG0780040587.01.T01:intron 40.0%
! GTTGGATTTGGTTGGTTACT+TGG + Chr7:79560610-79560629 MsG0780040587.01.T01:intron 40.0%
! TCGTAGTTTCTGCTTGCTAA+AGG + Chr7:79558706-79558725 MsG0780040587.01.T01:intron 40.0%
! TCTGTCCTTTTCATCAATGG+TGG + Chr7:79560137-79560156 MsG0780040587.01.T01:CDS 40.0%
!! AAAGGAAGCGTTTCAGCTTT+AGG + Chr7:79559191-79559210 MsG0780040587.01.T01:intron 40.0%
!! ACAATTTTGGCGATGCCATT+AGG - Chr7:79561515-79561534 None:intergenic 40.0%
!! CAGATCTTGGGTTGAAGTAT+AGG - Chr7:79558947-79558966 None:intergenic 40.0%
!! GTGTCTGATGTTGTTTCTCA+TGG + Chr7:79560226-79560245 MsG0780040587.01.T01:intron 40.0%
!! TTGGTATTTGTTGTTAGGCC+GGG + Chr7:79560928-79560947 MsG0780040587.01.T01:intron 40.0%
!! TTTGTTTCTACTGGTAGCCT+TGG + Chr7:79558598-79558617 MsG0780040587.01.T01:intron 40.0%
!!! ATGATTTTGGCTGGCAAAGT+AGG + Chr7:79559523-79559542 MsG0780040587.01.T01:five_prime_UTR 40.0%
AAGTCATCTCTAGCAGGATG+TGG + Chr7:79558876-79558895 MsG0780040587.01.T01:intron 45.0%
AGAACCCAAGAGGAATTTGC+TGG - Chr7:79561440-79561459 None:intergenic 45.0%
AGGTTTAAGAGTCCAGCGTT+GGG - Chr7:79557923-79557942 None:intergenic 45.0%
ATGGCCAGCAAATTCCTCTT+GGG + Chr7:79561433-79561452 MsG0780040587.01.T01:three_prime_UTR 45.0%
ATTGGAGAGTCAGCTATGGA+AGG + Chr7:79559819-79559838 MsG0780040587.01.T01:exon 45.0%
CATGTGATGATCCAGTGTGT+AGG - Chr7:79560977-79560996 None:intergenic 45.0%
CATTCTGATGATTCTGGACC+AGG - Chr7:79560081-79560100 None:intergenic 45.0%
CATTGTTACCCCTAAAGACC+TGG + Chr7:79561128-79561147 MsG0780040587.01.T01:intron 45.0%
CTATCAGAAGGACTTGTACC+CGG - Chr7:79560949-79560968 None:intergenic 45.0%
CTCATGGCCACAGTATATTG+AGG + Chr7:79560242-79560261 MsG0780040587.01.T01:intron 45.0%
GAAAAGAGGACAAGAGTGAC+AGG - Chr7:79559331-79559350 None:intergenic 45.0%
GATGGGAGCTTTGCAATACT+AGG - Chr7:79559134-79559153 None:intergenic 45.0%
GGAAATTGGAGAGTCAGCTA+TGG + Chr7:79559815-79559834 MsG0780040587.01.T01:exon 45.0%
GGGAACTGACCTGTTTATCA+TGG - Chr7:79561010-79561029 None:intergenic 45.0%
GTAAGACTGAGACTTGTGTG+CGG + Chr7:79561489-79561508 MsG0780040587.01.T01:three_prime_UTR 45.0%
GTGTAGGCATGACTATCAGA+AGG - Chr7:79560961-79560980 None:intergenic 45.0%
TACGGAAGATTGAAGCGATG+AGG - Chr7:79558068-79558087 None:intergenic 45.0%
TATGGCCAGCAAATTCCTCT+TGG + Chr7:79561432-79561451 MsG0780040587.01.T01:three_prime_UTR 45.0%
TCATACCAAAGACCGTGAGA+TGG - Chr7:79559608-79559627 None:intergenic 45.0%
TCTGGACCAGGTGAAAAATG+GGG - Chr7:79560069-79560088 None:intergenic 45.0%
TGATAGTCATGCCTACACAC+TGG + Chr7:79560963-79560982 MsG0780040587.01.T01:intron 45.0%
TTCAACCATCTCACGGTCTT+TGG + Chr7:79559600-79559619 MsG0780040587.01.T01:five_prime_UTR 45.0%
! AGGTGCTGTAAGGGAAACAA+GGG + Chr7:79559839-79559858 MsG0780040587.01.T01:CDS 45.0%
! ATGATCCAGTTGATGCCTGA+TGG + Chr7:79558519-79558538 MsG0780040587.01.T01:intron 45.0%
! CCCGCTGGTTATTTGGAAAT+TGG + Chr7:79559801-79559820 MsG0780040587.01.T01:five_prime_UTR 45.0%
! GATTTTAGACAATGAGCGCC+GGG + Chr7:79558551-79558570 MsG0780040587.01.T01:intron 45.0%
! GGATTTTAGACAATGAGCGC+CGG + Chr7:79558550-79558569 MsG0780040587.01.T01:intron 45.0%
! TGATCCAGTTGATGCCTGAT+GGG + Chr7:79558520-79558539 MsG0780040587.01.T01:intron 45.0%
! TGTATGTTCGGTTTGAGGGA+AGG + Chr7:79560370-79560389 MsG0780040587.01.T01:intron 45.0%
!! AAGAAGCCCCATTTTTCACC+TGG + Chr7:79560060-79560079 MsG0780040587.01.T01:CDS 45.0%
!! AAGGTGCTGTAAGGGAAACA+AGG + Chr7:79559838-79559857 MsG0780040587.01.T01:CDS 45.0%
!! AGCTATGGAAGGTGCTGTAA+GGG + Chr7:79559830-79559849 MsG0780040587.01.T01:exon 45.0%
!! GAACATGGCATGATTTTGGC+TGG + Chr7:79559514-79559533 MsG0780040587.01.T01:intron 45.0%
!! GAATGATGGTGAAGGTATCC+AGG + Chr7:79557876-79557895 MsG0780040587.01.T01:five_prime_UTR 45.0%
ACAAGGTCCTCCTTTGCAAG+AGG + Chr7:79559573-79559592 MsG0780040587.01.T01:five_prime_UTR 50.0%
CAAATCCGCATAGCTGAACC+TGG - Chr7:79557897-79557916 None:intergenic 50.0%
CAAGTTCTGTCAGTGTGTGG+TGG + Chr7:79558256-79558275 MsG0780040587.01.T01:five_prime_UTR 50.0%
GAGGTTTAAGAGTCCAGCGT+TGG - Chr7:79557924-79557943 None:intergenic 50.0%
GATGGGAAGGAGTTGAGAGA+AGG - Chr7:79558000-79558019 None:intergenic 50.0%
GGTATCCAGGTTCAGCTATG+CGG + Chr7:79557889-79557908 MsG0780040587.01.T01:five_prime_UTR 50.0%
GTATTGCAAAGCTCCCATCG+TGG + Chr7:79559135-79559154 MsG0780040587.01.T01:intron 50.0%
TGCTGTAAGGGAAACAAGGG+AGG + Chr7:79559842-79559861 MsG0780040587.01.T01:CDS 50.0%
TGGCTGGCAAAGTAGGTAGT+GGG + Chr7:79559530-79559549 MsG0780040587.01.T01:five_prime_UTR 50.0%
TTGGCTGGCAAAGTAGGTAG+TGG + Chr7:79559529-79559548 MsG0780040587.01.T01:five_prime_UTR 50.0%
! AGCGATGAGGAAGCACGAAA+CGG - Chr7:79558055-79558074 None:intergenic 50.0%
! TGCAAAGACCTGAGCATTGC+TGG + Chr7:79561308-79561327 MsG0780040587.01.T01:exon 50.0%
!! CAGCTATGGAAGGTGCTGTA+AGG + Chr7:79559829-79559848 MsG0780040587.01.T01:exon 50.0%
!! TGATGCCTGATGGGCTGATA+TGG + Chr7:79558529-79558548 MsG0780040587.01.T01:intron 50.0%
ACGAAACGGTGCGAATCGAG+TGG - Chr7:79558041-79558060 None:intergenic 55.0%
CGAAACGGTGCGAATCGAGT+GGG - Chr7:79558040-79558059 None:intergenic 55.0%
GAGACTTGTGTGCGGCCTAA+TGG + Chr7:79561497-79561516 MsG0780040587.01.T01:three_prime_UTR 55.0%
GGCAAGGTCCATGGAAGAGT+TGG + Chr7:79559156-79559175 MsG0780040587.01.T01:intron 55.0%
TCAAGAGTCGAAGAGCCCTG+TGG + Chr7:79558916-79558935 MsG0780040587.01.T01:intron 55.0%
TCAGCCCATCAGGCATCAAC+TGG - Chr7:79558527-79558546 None:intergenic 55.0%
TCCATGGACCTTGCCACGAT+GGG - Chr7:79559151-79559170 None:intergenic 55.0%
TTCCATGGACCTTGCCACGA+TGG - Chr7:79559152-79559171 None:intergenic 55.0%
! GACGCTTCCCGCTGGTTATT+TGG + Chr7:79559794-79559813 MsG0780040587.01.T01:five_prime_UTR 55.0%
!! GCGGATTTGTTACCCAACGC+TGG + Chr7:79557908-79557927 MsG0780040587.01.T01:five_prime_UTR 55.0%
AATCGAGTGGGTGCGAGGTG+TGG - Chr7:79558028-79558047 None:intergenic 60.0%
GCAAAGCTCCCATCGTGGCA+AGG + Chr7:79559140-79559159 MsG0780040587.01.T01:intron 60.0%
TCAACAAGGACGCTTCCCGC+TGG + Chr7:79559786-79559805 MsG0780040587.01.T01:intron 60.0%
TCCCATCGTGGCAAGGTCCA+TGG + Chr7:79559147-79559166 MsG0780040587.01.T01:intron 60.0%
TCGGAGTCAGACTGTCTGCC+CGG - Chr7:79558572-79558591 None:intergenic 60.0%
!! AGGTGTGGTGGTGGATGGGA+AGG - Chr7:79558013-79558032 None:intergenic 60.0%
!! TGCGAGGTGTGGTGGTGGAT+GGG - Chr7:79558017-79558036 None:intergenic 60.0%
GTGCGAATCGAGTGGGTGCG+AGG - Chr7:79558033-79558052 None:intergenic 65.0%
!! GTGCGAGGTGTGGTGGTGGA+TGG - Chr7:79558018-79558037 None:intergenic 65.0%
CGAGTGGGTGCGAGGTGTGG+TGG - Chr7:79558025-79558044 None:intergenic 70.0%
GTGGGTGCGAGGTGTGGTGG+TGG - Chr7:79558022-79558041 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 79557870 79561581 79557870 ID=MsG0780040587.01;Name=MsG0780040587.01
Chr7 mRNA 79557870 79561581 79557870 ID=MsG0780040587.01.T01;Parent=MsG0780040587.01;Name=MsG0780040587.01.T01;_AED=0.45;_eAED=0.45;_QI=462|0.8|1|1|0.4|0.33|6|261|109
Chr7 exon 79557870 79558084 79557870 ID=MsG0780040587.01.T01:exon:516;Parent=MsG0780040587.01.T01
Chr7 exon 79558239 79558343 79558239 ID=MsG0780040587.01.T01:exon:517;Parent=MsG0780040587.01.T01
Chr7 exon 79559520 79559621 79559520 ID=MsG0780040587.01.T01:exon:518;Parent=MsG0780040587.01.T01
Chr7 exon 79559794 79559929 79559794 ID=MsG0780040587.01.T01:exon:519;Parent=MsG0780040587.01.T01
Chr7 exon 79560033 79560173 79560033 ID=MsG0780040587.01.T01:exon:520;Parent=MsG0780040587.01.T01
Chr7 exon 79561228 79561581 79561228 ID=MsG0780040587.01.T01:exon:521;Parent=MsG0780040587.01.T01
Chr7 five_prime_UTR 79557870 79558084 79557870 ID=MsG0780040587.01.T01:five_prime_utr;Parent=MsG0780040587.01.T01
Chr7 five_prime_UTR 79558239 79558343 79558239 ID=MsG0780040587.01.T01:five_prime_utr;Parent=MsG0780040587.01.T01
Chr7 five_prime_UTR 79559520 79559621 79559520 ID=MsG0780040587.01.T01:five_prime_utr;Parent=MsG0780040587.01.T01
Chr7 five_prime_UTR 79559794 79559833 79559794 ID=MsG0780040587.01.T01:five_prime_utr;Parent=MsG0780040587.01.T01
Chr7 CDS 79559834 79559929 79559834 ID=MsG0780040587.01.T01:cds;Parent=MsG0780040587.01.T01
Chr7 CDS 79560033 79560173 79560033 ID=MsG0780040587.01.T01:cds;Parent=MsG0780040587.01.T01
Chr7 CDS 79561228 79561320 79561228 ID=MsG0780040587.01.T01:cds;Parent=MsG0780040587.01.T01
Chr7 three_prime_UTR 79561321 79561581 79561321 ID=MsG0780040587.01.T01:three_prime_utr;Parent=MsG0780040587.01.T01
Gene Sequence

>MsG0780040587.01.T01

ATGGAAGGTGCTGTAAGGGAAACAAGGGAGGAAGCAAATGCAGATGTAGAAGTAATTTCTCCCTTTGCTCAGTTGGATATTCCTTTAATTGGCCAAACTTACATGATATTCTTAGCAAAGCTGAAGAAGCCCCATTTTTCACCTGGTCCAGAATCATCAGAATGCCAACTTTTTTCACTTGATGATATACCTTTTAATTCTCTGTCCTTTTCATCAATGGTGGTTACCTTGAGTTTGATTGCAGTAAAGTCTGGATATTTGAAGATTCTTATTAGAAGAATTTTAAATTCTGCTATCCTGAAGATTACTGTATCTTCTGCAAAGACCTGA
Protein sequence

>MsG0780040587.01.T01

MEGAVRETREEANADVEVISPFAQLDIPLIGQTYMIFLAKLKKPHFSPGPESSECQLFSLDDIPFNSLSFSSMVVTLSLIAVKSGYLKILIRRILNSAILKITVSSAKT*