Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040751.01.T01 | XP_013449906.1 | 98.14 | 215 | 1 | 3 | 1 | 213 | 1 | 214 | 9.76E-151 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040751.01.T01 | O82268 | 79.885 | 174 | 30 | 1 | 24 | 197 | 19 | 187 | 3.72E-87 | 259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040751.01.T01 | A0A072U2M0 | 98.140 | 215 | 1 | 3 | 1 | 213 | 1 | 214 | 4.66e-151 | 427 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0780040751.01 | MsG0880041861.01 | 0.812656 | 3.799332e-51 | 2.429529e-48 |
| MsG0780040751.01 | MsG0880041864.01 | 0.817637 | 2.973677e-52 | 2.177414e-49 |
| MsG0780040751.01 | MsG0880043157.01 | 0.820803 | 5.654639e-53 | 4.519883e-50 |
| MsG0780040751.01 | MsG0880043174.01 | 0.809837 | 1.552970e-50 | 9.215230e-48 |
| MsG0480020832.01 | MsG0780040751.01 | 0.805148 | 1.535045e-49 | 8.061046e-47 |
| MsG0480021676.01 | MsG0780040751.01 | 0.810709 | 1.007468e-50 | 6.117138e-48 |
| MsG0580025407.01 | MsG0780040751.01 | -0.831016 | 2.119791e-55 | 2.271726e-52 |
| MsG0580025821.01 | MsG0780040751.01 | 0.803457 | 3.455196e-49 | 1.737133e-46 |
| MsG0580028428.01 | MsG0780040751.01 | 0.809310 | 2.015644e-50 | 1.179407e-47 |
| MsG0580029396.01 | MsG0780040751.01 | 0.804700 | 1.904521e-49 | 9.886441e-47 |
| MsG0280007432.01 | MsG0780040751.01 | 0.809425 | 1.904728e-50 | 1.117952e-47 |
| MsG0680035708.01 | MsG0780040751.01 | 0.822945 | 1.805545e-53 | 1.533177e-50 |
| MsG0780036593.01 | MsG0780040751.01 | 0.808584 | 2.882624e-50 | 1.654478e-47 |
| MsG0780036596.01 | MsG0780040751.01 | 0.833400 | 5.449749e-56 | 6.269017e-53 |
| MsG0780037341.01 | MsG0780040751.01 | 0.815231 | 1.027624e-51 | 7.044612e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040751.01.T01 | MTR_7g097030 | 98.140 | 215 | 1 | 3 | 1 | 213 | 1 | 214 | 1.18e-154 | 427 |
| MsG0780040751.01.T01 | MTR_1g442860 | 74.603 | 189 | 47 | 1 | 1 | 188 | 1 | 189 | 1.35e-94 | 275 |
| MsG0780040751.01.T01 | MTR_1g069825 | 75.773 | 194 | 35 | 2 | 1 | 194 | 1 | 182 | 1.30e-90 | 265 |
| MsG0780040751.01.T01 | MTR_4g094428 | 82.609 | 138 | 24 | 0 | 63 | 200 | 45 | 182 | 1.96e-85 | 253 |
| MsG0780040751.01.T01 | MTR_1g075990 | 79.882 | 169 | 34 | 0 | 26 | 194 | 15 | 183 | 2.10e-85 | 251 |
| MsG0780040751.01.T01 | MTR_5g072510 | 80.451 | 133 | 26 | 0 | 63 | 195 | 36 | 168 | 1.29e-82 | 245 |
| MsG0780040751.01.T01 | MTR_3g031830 | 81.818 | 132 | 24 | 0 | 64 | 195 | 42 | 173 | 1.38e-73 | 222 |
| MsG0780040751.01.T01 | MTR_2g092950 | 67.974 | 153 | 42 | 1 | 35 | 187 | 1 | 146 | 1.99e-73 | 220 |
| MsG0780040751.01.T01 | MTR_7g115700 | 64.634 | 164 | 48 | 3 | 33 | 195 | 4 | 158 | 2.30e-72 | 217 |
| MsG0780040751.01.T01 | MTR_4g079930 | 64.901 | 151 | 53 | 0 | 37 | 187 | 2 | 152 | 4.17e-71 | 214 |
| MsG0780040751.01.T01 | MTR_2g016110 | 75.758 | 132 | 32 | 0 | 63 | 194 | 34 | 165 | 1.08e-70 | 213 |
| MsG0780040751.01.T01 | MTR_1g080210 | 69.325 | 163 | 50 | 0 | 26 | 188 | 2 | 164 | 5.55e-70 | 211 |
| MsG0780040751.01.T01 | MTR_2g076400 | 75.000 | 132 | 33 | 0 | 63 | 194 | 32 | 163 | 6.40e-70 | 211 |
| MsG0780040751.01.T01 | MTR_8g086350 | 67.347 | 147 | 48 | 0 | 63 | 209 | 30 | 176 | 1.98e-56 | 177 |
| MsG0780040751.01.T01 | MTR_1g114020 | 48.148 | 108 | 31 | 2 | 25 | 107 | 7 | 114 | 1.67e-22 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040751.01.T01 | AT2G31160 | 79.885 | 174 | 30 | 1 | 24 | 197 | 19 | 187 | 3.80e-88 | 259 |
| MsG0780040751.01.T01 | AT1G07090 | 76.389 | 144 | 34 | 0 | 53 | 196 | 20 | 163 | 1.46e-84 | 249 |
| MsG0780040751.01.T01 | AT3G23290 | 72.340 | 188 | 36 | 2 | 1 | 188 | 1 | 172 | 1.05e-80 | 239 |
| MsG0780040751.01.T01 | AT5G58500 | 79.104 | 134 | 27 | 1 | 63 | 195 | 18 | 151 | 6.56e-79 | 234 |
| MsG0780040751.01.T01 | AT2G42610 | 75.714 | 140 | 34 | 0 | 59 | 198 | 20 | 159 | 7.47e-74 | 221 |
| MsG0780040751.01.T01 | AT2G42610 | 75.714 | 140 | 34 | 0 | 59 | 198 | 20 | 159 | 7.47e-74 | 221 |
| MsG0780040751.01.T01 | AT5G28490 | 83.088 | 136 | 23 | 0 | 58 | 193 | 19 | 154 | 1.10e-72 | 219 |
| MsG0780040751.01.T01 | AT3G04510 | 80.000 | 130 | 26 | 0 | 64 | 193 | 33 | 162 | 1.22e-69 | 211 |
| MsG0780040751.01.T01 | AT1G78815 | 67.200 | 125 | 41 | 0 | 63 | 187 | 39 | 163 | 9.56e-63 | 194 |
| MsG0780040751.01.T01 | AT4G18610 | 69.048 | 126 | 38 | 1 | 63 | 187 | 36 | 161 | 4.56e-62 | 192 |
| MsG0780040751.01.T01 | AT1G16910 | 61.194 | 134 | 52 | 0 | 59 | 192 | 18 | 151 | 2.57e-58 | 181 |
Find 84 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCATGGTGTTTAGGTATT+TGG | 0.100645 | 7:+81933626 | MsG0780040751.01.T01:intron |
| TGTTCCAGTCACGGCGTTTC+TGG | 0.135291 | 7:-81933190 | None:intergenic |
| GCACCAAATGGGTTTGTTTC+TGG | 0.163146 | 7:-81933807 | None:intergenic |
| TTTAGGTATTTGGATCAATT+TGG | 0.178063 | 7:+81933636 | MsG0780040751.01.T01:intron |
| AATCAATACCTTGTTCTTCT+AGG | 0.191437 | 7:-81932868 | None:intergenic |
| CATATAGAGTGCTTTGTCTT+TGG | 0.231876 | 7:+81934064 | MsG0780040751.01.T01:three_prime_UTR |
| CTTCCCCATGCTTGCCTTAG+AGG | 0.241570 | 7:-81933729 | None:intergenic |
| CGTGCTGCCTTTGAAGAAAA+TGG | 0.248006 | 7:+81933777 | MsG0780040751.01.T01:CDS |
| GATTCAATTCAAGAATTTAT+AGG | 0.256232 | 7:+81932993 | MsG0780040751.01.T01:CDS |
| CACATGTCCTTGAATTTCTA+AGG | 0.268349 | 7:+81933273 | MsG0780040751.01.T01:CDS |
| AAAATCCACAGCTATAGTTT+TGG | 0.278394 | 7:+81932643 | MsG0780040751.01.T01:five_prime_UTR |
| AAGAACAAGGTATTGATTCT+TGG | 0.290001 | 7:+81932873 | MsG0780040751.01.T01:five_prime_UTR |
| CTAAAATCTAGTATGATTAA+AGG | 0.293625 | 7:-81934386 | None:intergenic |
| GGACATGGTGCTGGTGGATT+TGG | 0.312240 | 7:-81933702 | None:intergenic |
| ATTCAATTCAAGAATTTATA+GGG | 0.321871 | 7:+81932994 | MsG0780040751.01.T01:CDS |
| TGTTAGGCTTTGAAGGAAAT+AGG | 0.324854 | 7:-81932479 | None:intergenic |
| AGAGAGGTGTTAGGCTTTGA+AGG | 0.331061 | 7:-81932486 | None:intergenic |
| TGCCCATAAAATGGACAAAT+TGG | 0.336622 | 7:-81933678 | None:intergenic |
| GGATTTGGATGCCCATAAAA+TGG | 0.348197 | 7:-81933687 | None:intergenic |
| TTAGGTATTTGGATCAATTT+GGG | 0.353257 | 7:+81933637 | MsG0780040751.01.T01:intron |
| CACCATGTCCATGTCCTCTA+AGG | 0.357440 | 7:+81933715 | MsG0780040751.01.T01:CDS |
| CGCCGTGACTGGAACACCTT+TGG | 0.383976 | 7:+81933197 | MsG0780040751.01.T01:CDS |
| CTCATAGCGGCTGCTACTGT+TGG | 0.385139 | 7:-81933165 | None:intergenic |
| ATATTAATATTCTTCATTCA+TGG | 0.385287 | 7:-81932536 | None:intergenic |
| GAAAAGTTGGACAGTAGGTT+TGG | 0.403335 | 7:-81932453 | None:intergenic |
| AGGAAATAGGAAAGAAAAGT+TGG | 0.404681 | 7:-81932466 | None:intergenic |
| GTTGTTATTCATGAAGTTGC+AGG | 0.404729 | 7:-81933039 | None:intergenic |
| TTCTGTCACAGCAAGTAAAC+AGG | 0.405995 | 7:-81934089 | None:intergenic |
| GTCCACCTCTTTCCCTCTCC+AGG | 0.417407 | 7:+81933240 | MsG0780040751.01.T01:CDS |
| CTCACAGCTCGAGCACCAAA+TGG | 0.438986 | 7:-81933819 | None:intergenic |
| ATCAATACCTTGTTCTTCTA+GGG | 0.452216 | 7:-81932867 | None:intergenic |
| GACATGTGCACCGCTGCACC+TGG | 0.455724 | 7:-81933258 | None:intergenic |
| AGAACCAGAAACGCCGTGAC+TGG | 0.461495 | 7:+81933186 | MsG0780040751.01.T01:CDS |
| GTTGCACTTGCACCTTGTGC+TGG | 0.465381 | 7:-81933948 | None:intergenic |
| ACTGTTGGGACTGTTGATGA+TGG | 0.472335 | 7:-81933150 | None:intergenic |
| CTTGCACCTTGTGCTGGTGG+TGG | 0.478161 | 7:-81933942 | None:intergenic |
| ACATATACCTTAGAAATTCA+AGG | 0.480957 | 7:-81933280 | None:intergenic |
| GGAAAGAAAAGTTGGACAGT+AGG | 0.482092 | 7:-81932458 | None:intergenic |
| AGTTGGACAGTAGGTTTGGA+TGG | 0.483212 | 7:-81932449 | None:intergenic |
| TCATAGCGGCTGCTACTGTT+GGG | 0.492824 | 7:-81933164 | None:intergenic |
| AAACCAGAAACAAACCCATT+TGG | 0.494448 | 7:+81933804 | MsG0780040751.01.T01:CDS |
| GGTGGAACTTGTTGTTGTTG+TGG | 0.502983 | 7:-81933924 | None:intergenic |
| TCATCACTTGTTAGTGCTAG+TGG | 0.505405 | 7:-81932561 | None:intergenic |
| CTTTGTGCTTTGCAGATCCA+AGG | 0.509553 | 7:-81932937 | None:intergenic |
| ACTTGTTGTTGTTGTGGTGG+TGG | 0.511066 | 7:-81933918 | None:intergenic |
| CTGCACCTGGAGAGGGAAAG+AGG | 0.514571 | 7:-81933245 | None:intergenic |
| GGAAGCCTTGATGCACTCAT+AGG | 0.523874 | 7:+81933747 | MsG0780040751.01.T01:CDS |
| CACAAAGTTCAAAACAACCT+TGG | 0.524263 | 7:+81932920 | MsG0780040751.01.T01:five_prime_UTR |
| CATGTCCTCTAAGGCAAGCA+TGG | 0.527761 | 7:+81933724 | MsG0780040751.01.T01:CDS |
| CATGCTTGCCTTAGAGGACA+TGG | 0.533497 | 7:-81933723 | None:intergenic |
| GGAACTTGTTGTTGTTGTGG+TGG | 0.534959 | 7:-81933921 | None:intergenic |
| GCACTTGCACCTTGTGCTGG+TGG | 0.535986 | 7:-81933945 | None:intergenic |
| AGAGAATGTGATGAGATTGA+TGG | 0.544970 | 7:-81932715 | None:intergenic |
| TCACAGCTCGAGCACCAAAT+GGG | 0.548037 | 7:-81933818 | None:intergenic |
| AGAGGACATGGACATGGTGC+TGG | 0.548410 | 7:-81933711 | None:intergenic |
| ATGTCCTCTAAGGCAAGCAT+GGG | 0.548889 | 7:+81933725 | MsG0780040751.01.T01:CDS |
| TGCACCGCTGCACCTGGAGA+GGG | 0.549423 | 7:-81933252 | None:intergenic |
| TTGAAGCTTGTGAATATACA+TGG | 0.551801 | 7:+81934215 | MsG0780040751.01.T01:three_prime_UTR |
| GACCAAAGGTGTTCCAGTCA+CGG | 0.557625 | 7:-81933199 | None:intergenic |
| TGTTGTTGTTAAGCTTGTTG+TGG | 0.560960 | 7:-81933081 | None:intergenic |
| CTTTCCCTCTCCAGGTGCAG+CGG | 0.566638 | 7:+81933248 | MsG0780040751.01.T01:CDS |
| TACTGGTAGTAGACTCATAG+TGG | 0.572208 | 7:+81934182 | MsG0780040751.01.T01:three_prime_UTR |
| AGACAGTGCTGTGTTTGTAC+TGG | 0.573730 | 7:+81934165 | MsG0780040751.01.T01:three_prime_UTR |
| ATTCTTGAGGTATTGACCAA+AGG | 0.583833 | 7:-81933213 | None:intergenic |
| GTGCACCGCTGCACCTGGAG+AGG | 0.586529 | 7:-81933253 | None:intergenic |
| GCTTCCCAAAACTATAGCTG+TGG | 0.593835 | 7:-81932648 | None:intergenic |
| TCATAGCTGTTATTGTTGAG+TGG | 0.610117 | 7:-81934274 | None:intergenic |
| GAGAATGTGATGAGATTGAT+GGG | 0.614654 | 7:-81932714 | None:intergenic |
| CAAGGAACCCTAGAAGAACA+AGG | 0.629527 | 7:+81932860 | MsG0780040751.01.T01:intron |
| GACGACCTATGAGTGCATCA+AGG | 0.630031 | 7:-81933752 | None:intergenic |
| CAAGTTCCACCACCAGCACA+AGG | 0.630971 | 7:+81933936 | MsG0780040751.01.T01:CDS |
| GATGGTTGAAGCTGCAGATG+AGG | 0.631628 | 7:-81933132 | None:intergenic |
| GATCTTCAATCGAAAGCAAG+AGG | 0.633126 | 7:+81933864 | MsG0780040751.01.T01:CDS |
| TGCCTTAGAGGACATGGACA+TGG | 0.634202 | 7:-81933717 | None:intergenic |
| CTTGGATCTGCAAAGCACAA+AGG | 0.637595 | 7:+81932938 | MsG0780040751.01.T01:five_prime_UTR |
| GGACATGGACATGGTGCTGG+TGG | 0.656231 | 7:-81933708 | None:intergenic |
| GAAGATCGCGAACTTCGCGA+AGG | 0.665877 | 7:-81933848 | None:intergenic |
| GGCGTTTCTGGTTCTCATAG+CGG | 0.684227 | 7:-81933178 | None:intergenic |
| GCTGCCTTTGAAGAAAATGG+AGG | 0.684897 | 7:+81933780 | MsG0780040751.01.T01:CDS |
| CATTTGGTGCTCGAGCTGTG+AGG | 0.714520 | 7:+81933820 | MsG0780040751.01.T01:CDS |
| TGTCCTCTAAGGCAAGCATG+GGG | 0.718093 | 7:+81933726 | MsG0780040751.01.T01:CDS |
| GCTGAGAAATGAGAATCACA+CGG | 0.732864 | 7:-81934248 | None:intergenic |
| CACCTGGAGAGGGAAAGAGG+TGG | 0.736000 | 7:-81933242 | None:intergenic |
| GAGGTGGACGATGATTCTTG+AGG | 0.757634 | 7:-81933226 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATTTTTAATATTATTT+TGG | + | Chr7:81933597-81933616 | MsG0780040751.01.T01:intron | 0.0% |
| !!! | ACTATTTTTATGTTTATTTT+AGG | - | Chr7:81932802-81932821 | None:intergenic | 10.0% |
| !!! | ACTTTTTTTTAATCATATTT+AGG | + | Chr7:81934008-81934027 | MsG0780040751.01.T01:three_prime_UTR | 10.0% |
| !!! | CTTTTTTTTAATCATATTTA+GGG | + | Chr7:81934009-81934028 | MsG0780040751.01.T01:three_prime_UTR | 10.0% |
| !! | ATATTAATATTCTTCATTCA+TGG | - | Chr7:81932539-81932558 | None:intergenic | 15.0% |
| !! | ATTCAATTCAAGAATTTATA+GGG | + | Chr7:81932994-81933013 | MsG0780040751.01.T01:CDS | 15.0% |
| !!! | AAAGTTAAGTTATATTTTCA+TGG | + | Chr7:81932971-81932990 | MsG0780040751.01.T01:exon | 15.0% |
| !!! | TAGTTTTTATTTCCTTAAAA+GGG | - | Chr7:81932618-81932637 | None:intergenic | 15.0% |
| !!! | TTATTTTGGTTAATTTATCA+TGG | + | Chr7:81933611-81933630 | MsG0780040751.01.T01:intron | 15.0% |
| !!! | TTTATGTTTATTTTAGGAAT+AGG | - | Chr7:81932796-81932815 | None:intergenic | 15.0% |
| !! | AAGTGAAAGAGTTAATTAAT+TGG | - | Chr7:81932835-81932854 | None:intergenic | 20.0% |
| !! | CTAAAATCTAGTATGATTAA+AGG | - | Chr7:81934389-81934408 | None:intergenic | 20.0% |
| !! | GATTCAATTCAAGAATTTAT+AGG | + | Chr7:81932993-81933012 | MsG0780040751.01.T01:CDS | 20.0% |
| !! | TCATATATAGCTATAAATTG+CGG | + | Chr7:81933548-81933567 | MsG0780040751.01.T01:intron | 20.0% |
| !!! | CTTTAATCATACTAGATTTT+AGG | + | Chr7:81934387-81934406 | MsG0780040751.01.T01:three_prime_UTR | 20.0% |
| !!! | GTAGTTTTTATTTCCTTAAA+AGG | - | Chr7:81932619-81932638 | None:intergenic | 20.0% |
| !!! | TTTATTTTAGGAATAGGATA+GGG | - | Chr7:81932790-81932809 | None:intergenic | 20.0% |
| ! | ACATATACCTTAGAAATTCA+AGG | - | Chr7:81933283-81933302 | None:intergenic | 25.0% |
| ! | GTTAATTTATCATGGTGTTT+AGG | + | Chr7:81933619-81933638 | MsG0780040751.01.T01:intron | 25.0% |
| ! | TTAGGTATTTGGATCAATTT+GGG | + | Chr7:81933637-81933656 | MsG0780040751.01.T01:intron | 25.0% |
| ! | TTTAGGTATTTGGATCAATT+TGG | + | Chr7:81933636-81933655 | MsG0780040751.01.T01:intron | 25.0% |
| !!! | GTTTATTTTAGGAATAGGAT+AGG | - | Chr7:81932791-81932810 | None:intergenic | 25.0% |
| !!! | TGCATCACAATTTTTTATAG+TGG | + | Chr7:81933414-81933433 | MsG0780040751.01.T01:intron | 25.0% |
| AATCAATACCTTGTTCTTCT+AGG | - | Chr7:81932871-81932890 | None:intergenic | 30.0% | |
| AGGAAATAGGAAAGAAAAGT+TGG | - | Chr7:81932469-81932488 | None:intergenic | 30.0% | |
| ATCAATACCTTGTTCTTCTA+GGG | - | Chr7:81932870-81932889 | None:intergenic | 30.0% | |
| ATGCAGTTGAAAAGAAAGAA+AGG | - | Chr7:81933357-81933376 | None:intergenic | 30.0% | |
| GCAACTACTATTCAAAACTT+GGG | - | Chr7:81933391-81933410 | None:intergenic | 30.0% | |
| TATCATGGTGTTTAGGTATT+TGG | + | Chr7:81933626-81933645 | MsG0780040751.01.T01:intron | 30.0% | |
| TGCAACTACTATTCAAAACT+TGG | - | Chr7:81933392-81933411 | None:intergenic | 30.0% | |
| TTGAAGCTTGTGAATATACA+TGG | + | Chr7:81934215-81934234 | MsG0780040751.01.T01:three_prime_UTR | 30.0% | |
| ! | AAAATCCACAGCTATAGTTT+TGG | + | Chr7:81932643-81932662 | MsG0780040751.01.T01:five_prime_UTR | 30.0% |
| ! | AAATCCACAGCTATAGTTTT+GGG | + | Chr7:81932644-81932663 | MsG0780040751.01.T01:five_prime_UTR | 30.0% |
| ! | TTTTCCTCCATTTTCTTCAA+AGG | - | Chr7:81933787-81933806 | None:intergenic | 30.0% |
| !! | AAGAACAAGGTATTGATTCT+TGG | + | Chr7:81932873-81932892 | MsG0780040751.01.T01:five_prime_UTR | 30.0% |
| !! | ATTTGACTTTTTAACCGACA+TGG | + | Chr7:81933474-81933493 | MsG0780040751.01.T01:intron | 30.0% |
| !!! | ACTATAGCTGTGGATTTTTT+AGG | - | Chr7:81932641-81932660 | None:intergenic | 30.0% |
| AAACCAGAAACAAACCCATT+TGG | + | Chr7:81933804-81933823 | MsG0780040751.01.T01:CDS | 35.0% | |
| AAAGAAAGGTTGCATTTGCA+TGG | - | Chr7:81933343-81933362 | None:intergenic | 35.0% | |
| AGAGAATGTGATGAGATTGA+TGG | - | Chr7:81932718-81932737 | None:intergenic | 35.0% | |
| CACAAAGTTCAAAACAACCT+TGG | + | Chr7:81932920-81932939 | MsG0780040751.01.T01:five_prime_UTR | 35.0% | |
| CACATGTCCTTGAATTTCTA+AGG | + | Chr7:81933273-81933292 | MsG0780040751.01.T01:CDS | 35.0% | |
| GAACGAGATTTAAACCATGT+CGG | - | Chr7:81933491-81933510 | None:intergenic | 35.0% | |
| GAGAATGTGATGAGATTGAT+GGG | - | Chr7:81932717-81932736 | None:intergenic | 35.0% | |
| TCATAGCTGTTATTGTTGAG+TGG | - | Chr7:81934277-81934296 | None:intergenic | 35.0% | |
| TGCCCATAAAATGGACAAAT+TGG | - | Chr7:81933681-81933700 | None:intergenic | 35.0% | |
| ! | ACGCCAATTTGTCCATTTTA+TGG | + | Chr7:81933675-81933694 | MsG0780040751.01.T01:CDS | 35.0% |
| ! | CATATAGAGTGCTTTGTCTT+TGG | + | Chr7:81934064-81934083 | MsG0780040751.01.T01:three_prime_UTR | 35.0% |
| ! | CGCCAATTTGTCCATTTTAT+GGG | + | Chr7:81933676-81933695 | MsG0780040751.01.T01:CDS | 35.0% |
| ! | CTTTCTGCTTCATCATTTTC+AGG | + | Chr7:81932755-81932774 | MsG0780040751.01.T01:five_prime_UTR | 35.0% |
| ! | GTTGTTATTCATGAAGTTGC+AGG | - | Chr7:81933042-81933061 | None:intergenic | 35.0% |
| !! | AACTCTTTCACTTTTGTCCA+AGG | + | Chr7:81932842-81932861 | MsG0780040751.01.T01:intron | 35.0% |
| !! | ATTCTTGAGGTATTGACCAA+AGG | - | Chr7:81933216-81933235 | None:intergenic | 35.0% |
| !! | TCACAAGCTTCAACTTTTTC+AGG | - | Chr7:81934208-81934227 | None:intergenic | 35.0% |
| !! | TGTTAGGCTTTGAAGGAAAT+AGG | - | Chr7:81932482-81932501 | None:intergenic | 35.0% |
| !! | TGTTGTTGTTAAGCTTGTTG+TGG | - | Chr7:81933084-81933103 | None:intergenic | 35.0% |
| ACAACAACAACAACAGCTAG+TGG | + | Chr7:81933101-81933120 | MsG0780040751.01.T01:CDS | 40.0% | |
| GAAAAGTTGGACAGTAGGTT+TGG | - | Chr7:81932456-81932475 | None:intergenic | 40.0% | |
| GATCTTCAATCGAAAGCAAG+AGG | + | Chr7:81933864-81933883 | MsG0780040751.01.T01:CDS | 40.0% | |
| GCTGAGAAATGAGAATCACA+CGG | - | Chr7:81934251-81934270 | None:intergenic | 40.0% | |
| GGAAAGAAAAGTTGGACAGT+AGG | - | Chr7:81932461-81932480 | None:intergenic | 40.0% | |
| GGATTTGGATGCCCATAAAA+TGG | - | Chr7:81933690-81933709 | None:intergenic | 40.0% | |
| TACTGGTAGTAGACTCATAG+TGG | + | Chr7:81934182-81934201 | MsG0780040751.01.T01:three_prime_UTR | 40.0% | |
| TTCTGTCACAGCAAGTAAAC+AGG | - | Chr7:81934092-81934111 | None:intergenic | 40.0% | |
| ! | TCATCACTTGTTAGTGCTAG+TGG | - | Chr7:81932564-81932583 | None:intergenic | 40.0% |
| !! | GAGTTTGCTTCACCCTTTTA+AGG | + | Chr7:81932603-81932622 | MsG0780040751.01.T01:five_prime_UTR | 40.0% |
| AGACAGTGCTGTGTTTGTAC+TGG | + | Chr7:81934165-81934184 | MsG0780040751.01.T01:three_prime_UTR | 45.0% | |
| CAAGGAACCCTAGAAGAACA+AGG | + | Chr7:81932860-81932879 | MsG0780040751.01.T01:intron | 45.0% | |
| CTTGGATCTGCAAAGCACAA+AGG | + | Chr7:81932938-81932957 | MsG0780040751.01.T01:five_prime_UTR | 45.0% | |
| CTTTGTGCTTTGCAGATCCA+AGG | - | Chr7:81932940-81932959 | None:intergenic | 45.0% | |
| GCTTCCCAAAACTATAGCTG+TGG | - | Chr7:81932651-81932670 | None:intergenic | 45.0% | |
| ! | ACTGTTGGGACTGTTGATGA+TGG | - | Chr7:81933153-81933172 | None:intergenic | 45.0% |
| ! | CGTGCTGCCTTTGAAGAAAA+TGG | + | Chr7:81933777-81933796 | MsG0780040751.01.T01:CDS | 45.0% |
| ! | GCACCAAATGGGTTTGTTTC+TGG | - | Chr7:81933810-81933829 | None:intergenic | 45.0% |
| ! | GCTGCCTTTGAAGAAAATGG+AGG | + | Chr7:81933780-81933799 | MsG0780040751.01.T01:CDS | 45.0% |
| !! | ACTTGTTGTTGTTGTGGTGG+TGG | - | Chr7:81933921-81933940 | None:intergenic | 45.0% |
| !! | AGAGAGGTGTTAGGCTTTGA+AGG | - | Chr7:81932489-81932508 | None:intergenic | 45.0% |
| !! | ATGTCCTCTAAGGCAAGCAT+GGG | + | Chr7:81933725-81933744 | MsG0780040751.01.T01:CDS | 45.0% |
| !! | CTTGTTCTTCTAGGGTTCCT+TGG | - | Chr7:81932862-81932881 | None:intergenic | 45.0% |
| !! | GGAACTTGTTGTTGTTGTGG+TGG | - | Chr7:81933924-81933943 | None:intergenic | 45.0% |
| !! | GGTGGAACTTGTTGTTGTTG+TGG | - | Chr7:81933927-81933946 | None:intergenic | 45.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | Chr7:81932503-81932522 | None:intergenic | 50.0% | |
| CACCATGTCCATGTCCTCTA+AGG | + | Chr7:81933715-81933734 | MsG0780040751.01.T01:CDS | 50.0% | |
| CATGCTTGCCTTAGAGGACA+TGG | - | Chr7:81933726-81933745 | None:intergenic | 50.0% | |
| GACGACCTATGAGTGCATCA+AGG | - | Chr7:81933755-81933774 | None:intergenic | 50.0% | |
| GAGGTGGACGATGATTCTTG+AGG | - | Chr7:81933229-81933248 | None:intergenic | 50.0% | |
| GATGGTTGAAGCTGCAGATG+AGG | - | Chr7:81933135-81933154 | None:intergenic | 50.0% | |
| GGAAGCCTTGATGCACTCAT+AGG | + | Chr7:81933747-81933766 | MsG0780040751.01.T01:CDS | 50.0% | |
| TCACAGCTCGAGCACCAAAT+GGG | - | Chr7:81933821-81933840 | None:intergenic | 50.0% | |
| TCATAGCGGCTGCTACTGTT+GGG | - | Chr7:81933167-81933186 | None:intergenic | 50.0% | |
| TGCCTTAGAGGACATGGACA+TGG | - | Chr7:81933720-81933739 | None:intergenic | 50.0% | |
| !! | CATGTCCTCTAAGGCAAGCA+TGG | + | Chr7:81933724-81933743 | MsG0780040751.01.T01:CDS | 50.0% |
| !! | GACCAAAGGTGTTCCAGTCA+CGG | - | Chr7:81933202-81933221 | None:intergenic | 50.0% |
| !! | GAGAGAGAGAGAGAGGTGTT+AGG | - | Chr7:81932498-81932517 | None:intergenic | 50.0% |
| !! | GGCGTTTCTGGTTCTCATAG+CGG | - | Chr7:81933181-81933200 | None:intergenic | 50.0% |
| !! | TGTCCTCTAAGGCAAGCATG+GGG | + | Chr7:81933726-81933745 | MsG0780040751.01.T01:CDS | 50.0% |
| AGAACCAGAAACGCCGTGAC+TGG | + | Chr7:81933186-81933205 | MsG0780040751.01.T01:CDS | 55.0% | |
| AGAGGACATGGACATGGTGC+TGG | - | Chr7:81933714-81933733 | None:intergenic | 55.0% | |
| CAAGTTCCACCACCAGCACA+AGG | + | Chr7:81933936-81933955 | MsG0780040751.01.T01:CDS | 55.0% | |
| CTCACAGCTCGAGCACCAAA+TGG | - | Chr7:81933822-81933841 | None:intergenic | 55.0% | |
| CTCATAGCGGCTGCTACTGT+TGG | - | Chr7:81933168-81933187 | None:intergenic | 55.0% | |
| CTTCCCCATGCTTGCCTTAG+AGG | - | Chr7:81933732-81933751 | None:intergenic | 55.0% | |
| GAAGATCGCGAACTTCGCGA+AGG | - | Chr7:81933851-81933870 | None:intergenic | 55.0% | |
| GTTGCACTTGCACCTTGTGC+TGG | - | Chr7:81933951-81933970 | None:intergenic | 55.0% | |
| TGTTCCAGTCACGGCGTTTC+TGG | - | Chr7:81933193-81933212 | None:intergenic | 55.0% | |
| !! | CATTTGGTGCTCGAGCTGTG+AGG | + | Chr7:81933820-81933839 | MsG0780040751.01.T01:CDS | 55.0% |
| !! | GGACATGGTGCTGGTGGATT+TGG | - | Chr7:81933705-81933724 | None:intergenic | 55.0% |
| CACCTGGAGAGGGAAAGAGG+TGG | - | Chr7:81933245-81933264 | None:intergenic | 60.0% | |
| CGCCGTGACTGGAACACCTT+TGG | + | Chr7:81933197-81933216 | MsG0780040751.01.T01:CDS | 60.0% | |
| CTGCACCTGGAGAGGGAAAG+AGG | - | Chr7:81933248-81933267 | None:intergenic | 60.0% | |
| CTTTCCCTCTCCAGGTGCAG+CGG | + | Chr7:81933248-81933267 | MsG0780040751.01.T01:CDS | 60.0% | |
| GCACTTGCACCTTGTGCTGG+TGG | - | Chr7:81933948-81933967 | None:intergenic | 60.0% | |
| GTCCACCTCTTTCCCTCTCC+AGG | + | Chr7:81933240-81933259 | MsG0780040751.01.T01:CDS | 60.0% | |
| ! | CTTGCACCTTGTGCTGGTGG+TGG | - | Chr7:81933945-81933964 | None:intergenic | 60.0% |
| ! | GGACATGGACATGGTGCTGG+TGG | - | Chr7:81933711-81933730 | None:intergenic | 60.0% |
| GACATGTGCACCGCTGCACC+TGG | - | Chr7:81933261-81933280 | None:intergenic | 65.0% | |
| TGCACCGCTGCACCTGGAGA+GGG | - | Chr7:81933255-81933274 | None:intergenic | 65.0% | |
| GTGCACCGCTGCACCTGGAG+AGG | - | Chr7:81933256-81933275 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 81932451 | 81934427 | 81932451 | ID=MsG0780040751.01;Name=MsG0780040751.01 |
| Chr7 | mRNA | 81932451 | 81934427 | 81932451 | ID=MsG0780040751.01.T01;Parent=MsG0780040751.01;Name=MsG0780040751.01.T01;_AED=0.14;_eAED=0.14;_QI=452|1|1|1|0.5|0.33|3|450|213 |
| Chr7 | exon | 81932451 | 81932776 | 81932451 | ID=MsG0780040751.01.T01:exon:38184;Parent=MsG0780040751.01.T01 |
| Chr7 | exon | 81932864 | 81933294 | 81932864 | ID=MsG0780040751.01.T01:exon:38185;Parent=MsG0780040751.01.T01 |
| Chr7 | exon | 81933641 | 81934427 | 81933641 | ID=MsG0780040751.01.T01:exon:38186;Parent=MsG0780040751.01.T01 |
| Chr7 | five_prime_UTR | 81932451 | 81932776 | 81932451 | ID=MsG0780040751.01.T01:five_prime_utr;Parent=MsG0780040751.01.T01 |
| Chr7 | five_prime_UTR | 81932864 | 81932989 | 81932864 | ID=MsG0780040751.01.T01:five_prime_utr;Parent=MsG0780040751.01.T01 |
| Chr7 | CDS | 81932990 | 81933294 | 81932990 | ID=MsG0780040751.01.T01:cds;Parent=MsG0780040751.01.T01 |
| Chr7 | CDS | 81933641 | 81933977 | 81933641 | ID=MsG0780040751.01.T01:cds;Parent=MsG0780040751.01.T01 |
| Chr7 | three_prime_UTR | 81933978 | 81934427 | 81933978 | ID=MsG0780040751.01.T01:three_prime_utr;Parent=MsG0780040751.01.T01 |
| Gene Sequence |
| Protein sequence |
