Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021676.01.T01 | XP_013453119.1 | 87.407 | 270 | 18 | 3 | 1 | 270 | 1 | 254 | 1.90E-167 | 473 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021676.01.T01 | Q9ZSY8 | 58.983 | 295 | 78 | 10 | 4 | 270 | 26 | 305 | 4.49E-99 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021676.01.T01 | A0A072UBZ5 | 87.407 | 270 | 18 | 3 | 1 | 270 | 1 | 254 | 9.07e-168 | 473 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0480021676.01.T01 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0480020832.01 | MsG0480021676.01 | 0.829231 | 5.778075e-55 | 5.878304e-52 |
| MsG0480021676.01 | MsG0580025407.01 | -0.815558 | 8.694035e-52 | 6.013871e-49 |
| MsG0480021676.01 | MsG0580025612.01 | 0.803505 | 3.375680e-49 | 1.699355e-46 |
| MsG0480021676.01 | MsG0580026304.01 | 0.802237 | 6.172524e-49 | 3.008141e-46 |
| MsG0480021676.01 | MsG0580027925.01 | 0.803397 | 3.554212e-49 | 1.784226e-46 |
| MsG0480021676.01 | MsG0680035708.01 | 0.959051 | 5.110420e-117 | 1.984126e-111 |
| MsG0480021676.01 | MsG0780036593.01 | 0.818898 | 1.541402e-52 | 1.168627e-49 |
| MsG0480021676.01 | MsG0780036596.01 | 0.806645 | 7.439214e-50 | 4.058930e-47 |
| MsG0480021676.01 | MsG0780040681.01 | 0.814462 | 1.521774e-51 | 1.021795e-48 |
| MsG0480021676.01 | MsG0780040751.01 | 0.810709 | 1.007468e-50 | 6.117138e-48 |
| MsG0480021676.01 | MsG0780040888.01 | 0.821987 | 3.013748e-53 | 2.490187e-50 |
| MsG0480021676.01 | MsG0880041861.01 | 0.858478 | 8.014080e-63 | 2.048223e-59 |
| MsG0480021676.01 | MsG0880041863.01 | 0.818379 | 2.021406e-52 | 1.510769e-49 |
| MsG0480021676.01 | MsG0880041864.01 | 0.856742 | 2.619628e-62 | 6.314155e-59 |
| MsG0480021676.01 | MsG0880043157.01 | 0.821604 | 3.695837e-53 | 3.020708e-50 |
| MsG0480021676.01 | MsG0880044206.01 | 0.812329 | 4.477568e-51 | 2.838731e-48 |
| MsG0480021676.01 | MsG0880045992.01 | 0.807603 | 4.662347e-50 | 2.607913e-47 |
| MsG0380015891.01 | MsG0480021676.01 | 0.803245 | 3.822702e-49 | 1.911449e-46 |
| MsG0480018236.01 | MsG0480021676.01 | 0.810705 | 1.009308e-50 | 6.127632e-48 |
| MsG0280007432.01 | MsG0480021676.01 | 0.802457 | 5.559367e-49 | 2.724596e-46 |
| MsG0280007955.01 | MsG0480021676.01 | 0.814224 | 1.718288e-51 | 1.146240e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0480021676.01 | MsG0580028330.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021676.01.T01 | MTR_6g488150 | 87.407 | 270 | 18 | 3 | 1 | 270 | 1 | 254 | 2.30e-171 | 473 |
| MsG0480021676.01.T01 | MTR_6g488150 | 86.957 | 184 | 17 | 2 | 1 | 184 | 1 | 177 | 1.58e-110 | 317 |
| MsG0480021676.01.T01 | MTR_8g103030 | 60.959 | 292 | 58 | 8 | 14 | 270 | 23 | 293 | 1.35e-107 | 313 |
| MsG0480021676.01.T01 | MTR_8g067530 | 53.512 | 299 | 95 | 7 | 7 | 270 | 67 | 356 | 9.56e-94 | 280 |
| MsG0480021676.01.T01 | MTR_5g030710 | 52.881 | 295 | 90 | 8 | 15 | 270 | 51 | 335 | 6.66e-93 | 278 |
| MsG0480021676.01.T01 | MTR_2g101500 | 49.844 | 321 | 87 | 10 | 10 | 270 | 20 | 326 | 5.08e-87 | 262 |
| MsG0480021676.01.T01 | MTR_5g067350 | 50.327 | 306 | 95 | 11 | 7 | 270 | 57 | 347 | 1.49e-82 | 251 |
| MsG0480021676.01.T01 | MTR_1g093240 | 48.872 | 266 | 93 | 7 | 13 | 270 | 6 | 236 | 1.96e-72 | 222 |
| MsG0480021676.01.T01 | MTR_1g080860 | 47.388 | 268 | 98 | 7 | 15 | 269 | 15 | 252 | 1.14e-68 | 213 |
| MsG0480021676.01.T01 | MTR_1g093240 | 49.593 | 246 | 90 | 6 | 13 | 250 | 6 | 225 | 9.75e-68 | 210 |
| MsG0480021676.01.T01 | MTR_1g080860 | 48.000 | 250 | 96 | 6 | 15 | 251 | 15 | 243 | 3.65e-65 | 204 |
| MsG0480021676.01.T01 | MTR_1g070520 | 59.649 | 171 | 53 | 4 | 105 | 270 | 86 | 245 | 3.56e-62 | 196 |
| MsG0480021676.01.T01 | MTR_7g096090 | 57.831 | 166 | 59 | 2 | 105 | 270 | 96 | 250 | 1.57e-61 | 194 |
| MsG0480021676.01.T01 | MTR_1g093240 | 46.222 | 225 | 87 | 6 | 13 | 229 | 6 | 204 | 6.15e-54 | 174 |
| MsG0480021676.01.T01 | MTR_1g070830 | 42.797 | 236 | 90 | 6 | 15 | 250 | 12 | 202 | 6.81e-53 | 171 |
| MsG0480021676.01.T01 | MTR_1g040675 | 42.857 | 238 | 79 | 8 | 15 | 250 | 1 | 183 | 1.64e-51 | 167 |
| MsG0480021676.01.T01 | MTR_1g076270 | 42.616 | 237 | 69 | 6 | 13 | 249 | 9 | 178 | 4.67e-50 | 163 |
| MsG0480021676.01.T01 | MTR_1g093350 | 42.616 | 237 | 69 | 6 | 13 | 249 | 9 | 178 | 4.67e-50 | 163 |
| MsG0480021676.01.T01 | MTR_1g040675 | 39.631 | 217 | 74 | 8 | 15 | 229 | 1 | 162 | 1.87e-39 | 135 |
| MsG0480021676.01.T01 | MTR_5g067350 | 45.662 | 219 | 74 | 11 | 7 | 183 | 57 | 272 | 3.55e-39 | 138 |
| MsG0480021676.01.T01 | MTR_2g100780 | 37.795 | 254 | 124 | 10 | 21 | 250 | 18 | 261 | 7.01e-36 | 129 |
| MsG0480021676.01.T01 | MTR_2g100780 | 37.652 | 247 | 122 | 9 | 21 | 245 | 18 | 254 | 1.05e-35 | 129 |
| MsG0480021676.01.T01 | MTR_1g069495 | 42.045 | 176 | 69 | 4 | 108 | 250 | 82 | 257 | 6.07e-35 | 127 |
| MsG0480021676.01.T01 | MTR_4g011880 | 38.750 | 240 | 73 | 7 | 11 | 250 | 2 | 167 | 9.20e-35 | 124 |
| MsG0480021676.01.T01 | MTR_8g014520 | 32.721 | 272 | 134 | 7 | 9 | 245 | 3 | 260 | 1.81e-32 | 120 |
| MsG0480021676.01.T01 | MTR_8g014520 | 32.721 | 272 | 134 | 7 | 9 | 245 | 3 | 260 | 2.11e-32 | 120 |
| MsG0480021676.01.T01 | MTR_2g102490 | 51.695 | 118 | 46 | 4 | 141 | 255 | 86 | 195 | 2.22e-32 | 118 |
| MsG0480021676.01.T01 | MTR_3g106850 | 31.056 | 161 | 79 | 6 | 94 | 245 | 72 | 209 | 1.57e-18 | 82.0 |
| MsG0480021676.01.T01 | MTR_4g124300 | 37.143 | 140 | 61 | 5 | 105 | 243 | 68 | 181 | 2.50e-18 | 80.9 |
| MsG0480021676.01.T01 | MTR_7g110790 | 36.434 | 129 | 64 | 3 | 114 | 242 | 45 | 155 | 1.36e-17 | 78.2 |
| MsG0480021676.01.T01 | MTR_1g085750 | 35.878 | 131 | 60 | 3 | 112 | 242 | 64 | 170 | 2.15e-16 | 75.5 |
| MsG0480021676.01.T01 | MTR_4g115075 | 29.452 | 146 | 66 | 3 | 106 | 243 | 90 | 206 | 1.19e-14 | 71.2 |
| MsG0480021676.01.T01 | MTR_1g109510 | 34.483 | 145 | 73 | 5 | 101 | 242 | 43 | 168 | 5.37e-13 | 66.2 |
| MsG0480021676.01.T01 | MTR_1g085750 | 32.540 | 126 | 68 | 3 | 104 | 229 | 49 | 157 | 6.19e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021676.01.T01 | AT4G29080 | 58.983 | 295 | 78 | 10 | 4 | 270 | 26 | 305 | 4.57e-100 | 295 |
| MsG0480021676.01.T01 | AT2G22670 | 48.582 | 282 | 108 | 8 | 15 | 269 | 47 | 318 | 2.86e-79 | 242 |
| MsG0480021676.01.T01 | AT2G22670 | 48.582 | 282 | 108 | 8 | 15 | 269 | 47 | 318 | 2.86e-79 | 242 |
| MsG0480021676.01.T01 | AT2G22670 | 48.582 | 282 | 108 | 8 | 15 | 269 | 64 | 335 | 3.17e-79 | 243 |
| MsG0480021676.01.T01 | AT2G22670 | 50.570 | 263 | 102 | 7 | 15 | 250 | 47 | 308 | 3.85e-79 | 242 |
| MsG0480021676.01.T01 | AT2G22670 | 50.570 | 263 | 102 | 7 | 15 | 250 | 47 | 308 | 3.85e-79 | 242 |
| MsG0480021676.01.T01 | AT5G65670 | 48.239 | 284 | 111 | 4 | 15 | 269 | 61 | 337 | 5.80e-78 | 239 |
| MsG0480021676.01.T01 | AT5G65670 | 48.239 | 284 | 109 | 4 | 15 | 269 | 61 | 335 | 7.81e-78 | 239 |
| MsG0480021676.01.T01 | AT3G04730 | 46.909 | 275 | 87 | 8 | 15 | 270 | 2 | 236 | 9.10e-72 | 220 |
| MsG0480021676.01.T01 | AT4G14550 | 47.893 | 261 | 98 | 7 | 15 | 270 | 1 | 228 | 2.61e-70 | 216 |
| MsG0480021676.01.T01 | AT3G23050 | 46.667 | 270 | 98 | 8 | 15 | 270 | 6 | 243 | 1.59e-68 | 212 |
| MsG0480021676.01.T01 | AT4G14550 | 47.809 | 251 | 101 | 7 | 15 | 259 | 1 | 227 | 2.53e-67 | 209 |
| MsG0480021676.01.T01 | AT1G04250 | 44.528 | 265 | 94 | 9 | 15 | 269 | 7 | 228 | 7.63e-66 | 205 |
| MsG0480021676.01.T01 | AT4G14550 | 45.662 | 219 | 90 | 6 | 15 | 228 | 1 | 195 | 3.35e-53 | 171 |
| MsG0480021676.01.T01 | AT3G23050 | 44.298 | 228 | 91 | 6 | 15 | 229 | 6 | 210 | 1.06e-51 | 168 |
| MsG0480021676.01.T01 | AT1G04240 | 44.492 | 236 | 77 | 8 | 15 | 250 | 5 | 186 | 3.22e-50 | 164 |
| MsG0480021676.01.T01 | AT1G04240 | 43.145 | 248 | 87 | 8 | 3 | 250 | 93 | 286 | 2.33e-49 | 165 |
| MsG0480021676.01.T01 | AT5G43700 | 40.254 | 236 | 77 | 6 | 15 | 250 | 11 | 182 | 1.45e-46 | 154 |
| MsG0480021676.01.T01 | AT3G23030 | 41.250 | 240 | 68 | 7 | 13 | 252 | 7 | 173 | 2.57e-42 | 143 |
| MsG0480021676.01.T01 | AT1G52830 | 38.333 | 240 | 92 | 8 | 11 | 250 | 2 | 185 | 3.71e-42 | 143 |
| MsG0480021676.01.T01 | AT3G15540 | 39.526 | 253 | 92 | 9 | 14 | 265 | 5 | 197 | 1.45e-41 | 142 |
| MsG0480021676.01.T01 | AT3G23030 | 41.250 | 240 | 68 | 7 | 13 | 252 | 94 | 260 | 2.29e-41 | 143 |
| MsG0480021676.01.T01 | AT4G14560 | 41.702 | 235 | 63 | 7 | 12 | 246 | 4 | 164 | 1.44e-39 | 135 |
| MsG0480021676.01.T01 | AT4G28640 | 44.512 | 164 | 71 | 4 | 103 | 250 | 83 | 242 | 3.06e-37 | 132 |
| MsG0480021676.01.T01 | AT4G28640 | 44.444 | 162 | 70 | 4 | 103 | 248 | 83 | 240 | 5.96e-37 | 131 |
| MsG0480021676.01.T01 | AT1G15580 | 34.764 | 233 | 74 | 4 | 12 | 244 | 5 | 159 | 7.87e-36 | 126 |
| MsG0480021676.01.T01 | AT4G28640 | 44.444 | 162 | 70 | 4 | 103 | 248 | 83 | 240 | 1.34e-35 | 129 |
| MsG0480021676.01.T01 | AT2G33310 | 45.122 | 164 | 62 | 5 | 108 | 250 | 76 | 232 | 2.81e-35 | 127 |
| MsG0480021676.01.T01 | AT2G33310 | 45.122 | 164 | 62 | 5 | 108 | 250 | 75 | 231 | 3.36e-35 | 127 |
| MsG0480021676.01.T01 | AT2G33310 | 45.122 | 164 | 62 | 5 | 108 | 250 | 75 | 231 | 3.36e-35 | 127 |
| MsG0480021676.01.T01 | AT3G16500 | 36.471 | 255 | 119 | 9 | 7 | 245 | 25 | 252 | 4.45e-35 | 127 |
| MsG0480021676.01.T01 | AT3G16500 | 36.471 | 255 | 119 | 9 | 7 | 245 | 25 | 252 | 4.51e-35 | 127 |
| MsG0480021676.01.T01 | AT1G04550 | 43.902 | 164 | 61 | 5 | 108 | 249 | 69 | 223 | 8.26e-34 | 123 |
| MsG0480021676.01.T01 | AT1G04100 | 37.356 | 174 | 80 | 4 | 105 | 251 | 90 | 261 | 4.94e-32 | 119 |
| MsG0480021676.01.T01 | AT1G51950 | 40.588 | 170 | 76 | 4 | 97 | 245 | 85 | 250 | 7.15e-31 | 116 |
| MsG0480021676.01.T01 | AT4G14550 | 41.279 | 172 | 74 | 5 | 15 | 181 | 1 | 150 | 4.82e-30 | 111 |
| MsG0480021676.01.T01 | AT3G23050 | 39.344 | 183 | 77 | 5 | 15 | 184 | 6 | 167 | 1.99e-29 | 109 |
| MsG0480021676.01.T01 | AT5G25890 | 36.879 | 141 | 67 | 3 | 109 | 249 | 49 | 167 | 7.53e-26 | 100 |
| MsG0480021676.01.T01 | AT3G17600 | 37.857 | 140 | 63 | 4 | 103 | 242 | 39 | 154 | 3.84e-22 | 90.5 |
| MsG0480021676.01.T01 | AT3G62100 | 38.462 | 104 | 49 | 1 | 140 | 243 | 81 | 169 | 1.09e-18 | 81.6 |
| MsG0480021676.01.T01 | AT2G46990 | 37.143 | 105 | 51 | 1 | 140 | 244 | 83 | 172 | 2.51e-18 | 80.5 |
| MsG0480021676.01.T01 | AT4G32280 | 25.789 | 190 | 87 | 6 | 86 | 242 | 72 | 240 | 8.46e-15 | 72.4 |
| MsG0480021676.01.T01 | AT4G32280 | 34.653 | 101 | 46 | 2 | 142 | 242 | 118 | 198 | 4.61e-14 | 69.7 |
| MsG0480021676.01.T01 | AT1G15050 | 37.069 | 116 | 55 | 3 | 132 | 247 | 53 | 150 | 1.06e-13 | 67.4 |
| MsG0480021676.01.T01 | AT3G62100 | 37.778 | 90 | 41 | 1 | 140 | 229 | 81 | 155 | 1.76e-13 | 67.0 |
| MsG0480021676.01.T01 | AT2G46990 | 37.778 | 90 | 41 | 1 | 140 | 229 | 83 | 157 | 1.82e-13 | 67.0 |
| MsG0480021676.01.T01 | AT1G15050 | 37.069 | 116 | 55 | 3 | 132 | 247 | 85 | 182 | 2.25e-13 | 67.4 |
| MsG0480021676.01.T01 | AT2G01200 | 34.711 | 121 | 63 | 2 | 127 | 247 | 84 | 188 | 4.90e-13 | 66.6 |
| MsG0480021676.01.T01 | AT2G01200 | 34.711 | 121 | 63 | 2 | 127 | 247 | 84 | 188 | 4.90e-13 | 66.6 |
Find 67 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATAAAGGCATCCAAATT+TGG | 0.170065 | 4:-62828634 | None:intergenic |
| GTTTCTTAGGTTTGTTAATA+AGG | 0.180337 | 4:+62830216 | MsG0480021676.01.T01:three_prime_UTR |
| TACTCTTTATGCATGCTTAA+TGG | 0.190958 | 4:+62827473 | MsG0480021676.01.T01:CDS |
| ATGCTTGTTGTTGACAATTA+AGG | 0.211903 | 4:+62830194 | MsG0480021676.01.T01:three_prime_UTR |
| AGATCCACTTTCCTCAAGTA+TGG | 0.227669 | 4:-62828678 | None:intergenic |
| GTTGACAATTAAGGTTTCTT+AGG | 0.251284 | 4:+62830203 | MsG0480021676.01.T01:three_prime_UTR |
| CTATTCAAAGCCAAGTGTTT+AGG | 0.252784 | 4:-62830156 | None:intergenic |
| GGCCACCAATCCGTTCTTTC+AGG | 0.268848 | 4:+62828559 | MsG0480021676.01.T01:CDS |
| GATGATGTAGAAGCCAAATT+TGG | 0.307716 | 4:+62828621 | MsG0480021676.01.T01:CDS |
| TATTCAAAGCCAAGTGTTTA+GGG | 0.308933 | 4:-62830155 | None:intergenic |
| ATGAAAAGTGTAGGTCAATT+TGG | 0.319033 | 4:+62829194 | MsG0480021676.01.T01:intron |
| TTGACTCTTGCAAGAGGTTA+AGG | 0.334728 | 4:+62829745 | MsG0480021676.01.T01:CDS |
| GATGTTATATCACTATGATT+TGG | 0.358309 | 4:+62830402 | MsG0480021676.01.T01:three_prime_UTR |
| AGTTCTGAAGCAATTGGATT+AGG | 0.360095 | 4:+62829777 | MsG0480021676.01.T01:CDS |
| CTTATGTATAATCCTACATA+TGG | 0.369542 | 4:+62830096 | MsG0480021676.01.T01:three_prime_UTR |
| TTTCTTAGGTTTGTTAATAA+GGG | 0.374956 | 4:+62830217 | MsG0480021676.01.T01:three_prime_UTR |
| TTTGTGTGAAAGTAGATTGA+TGG | 0.380197 | 4:+62829244 | MsG0480021676.01.T01:CDS |
| CCTTCACAACAGAACCTTGT+TGG | 0.383043 | 4:-62827565 | None:intergenic |
| ATGAAAAGTTCTGAAGCAAT+TGG | 0.388635 | 4:+62829771 | MsG0480021676.01.T01:CDS |
| AAGAAGAAGTCTCAGATATA+TGG | 0.397635 | 4:+62827623 | MsG0480021676.01.T01:CDS |
| CACAACAGAACCTTGTTGGT+TGG | 0.401071 | 4:-62827561 | None:intergenic |
| ATCACCATCTTTATCTTCAT+AGG | 0.403740 | 4:-62829297 | None:intergenic |
| CTCTCTGGTGATTCAGAACC+AGG | 0.404018 | 4:-62827419 | None:intergenic |
| TTAATGTTAGAGATAGAGAT+TGG | 0.415512 | 4:+62830297 | MsG0480021676.01.T01:three_prime_UTR |
| TGATCTAGGGAACAAATTGT+AGG | 0.417413 | 4:+62828534 | MsG0480021676.01.T01:intron |
| AGAAGATCATTATTTCTCTC+TGG | 0.419570 | 4:-62827434 | None:intergenic |
| AGATGTTATGTTGCTATGGT+TGG | 0.423102 | 4:+62830380 | MsG0480021676.01.T01:three_prime_UTR |
| TTTCTTCAAACCAATTTCAA+TGG | 0.423741 | 4:-62827531 | None:intergenic |
| AGATTGATGGATCTCCTTCA+TGG | 0.440946 | 4:+62829257 | MsG0480021676.01.T01:CDS |
| GTAGGTCAATTTGGCTCTCA+TGG | 0.457514 | 4:+62829203 | MsG0480021676.01.T01:intron |
| GACTTCTTCTTCTCATTCAA+AGG | 0.481249 | 4:-62827611 | None:intergenic |
| TTCTTTCAGGAAGAATTCAA+TGG | 0.488415 | 4:+62828572 | MsG0480021676.01.T01:CDS |
| TAAAGTTTCCACTACTACAA+TGG | 0.489709 | 4:+62827322 | MsG0480021676.01.T01:exon |
| ATGAAGATAAAGATGGTGAT+TGG | 0.490100 | 4:+62829300 | MsG0480021676.01.T01:CDS |
| TATGTAAAAGTTAGCATGGA+TGG | 0.496315 | 4:+62828651 | MsG0480021676.01.T01:CDS |
| CTTGAGATGTTATGTTGCTA+TGG | 0.497907 | 4:+62830376 | MsG0480021676.01.T01:three_prime_UTR |
| GAGTTAAGACTTGGTTTACC+TGG | 0.509603 | 4:+62827401 | MsG0480021676.01.T01:CDS |
| TTGAATTCTTCCTGAAAGAA+CGG | 0.519997 | 4:-62828569 | None:intergenic |
| AAAATATGCACTTACTTCCA+TGG | 0.525031 | 4:-62829341 | None:intergenic |
| AATATAGTGCCCTAAACACT+TGG | 0.526724 | 4:+62830146 | MsG0480021676.01.T01:three_prime_UTR |
| AGAACTTTCCATTGTAGTAG+TGG | 0.527264 | 4:-62827330 | None:intergenic |
| GATCCACTTTCCTCAAGTAT+GGG | 0.530733 | 4:-62828677 | None:intergenic |
| TTCCTGAAAGAACGGATTGG+TGG | 0.533390 | 4:-62828561 | None:intergenic |
| TGCTAGTTGGTGATGTTCCA+TGG | 0.551199 | 4:+62829324 | MsG0480021676.01.T01:CDS |
| AAGGCTACTGAGTTAAGACT+TGG | 0.551451 | 4:+62827392 | MsG0480021676.01.T01:CDS |
| CCTTTATGTAAAAGTTAGCA+TGG | 0.552884 | 4:+62828647 | MsG0480021676.01.T01:CDS |
| GACACTATGATTCCATATGT+AGG | 0.572589 | 4:-62830108 | None:intergenic |
| TTCTTCCTGAAAGAACGGAT+TGG | 0.577749 | 4:-62828564 | None:intergenic |
| CTCACCTATGAAGATAAAGA+TGG | 0.579438 | 4:+62829293 | MsG0480021676.01.T01:CDS |
| TGCCCCATACTTGAGGAAAG+TGG | 0.579458 | 4:+62828674 | MsG0480021676.01.T01:CDS |
| TTATGCAGCACCAAGAGCCA+TGG | 0.585701 | 4:+62830001 | MsG0480021676.01.T01:intron |
| CCAACAAGGTTCTGTTGTGA+AGG | 0.586707 | 4:+62827565 | MsG0480021676.01.T01:CDS |
| GTCTTAACTCAGTAGCCTTG+AGG | 0.600451 | 4:-62827388 | None:intergenic |
| GATGGTGATTGGATGCTAGT+TGG | 0.601437 | 4:+62829311 | MsG0480021676.01.T01:CDS |
| CATCTTTATCTTCATAGGTG+AGG | 0.607712 | 4:-62829292 | None:intergenic |
| TAACAATGGCTTGAACCTCA+AGG | 0.615787 | 4:+62827373 | MsG0480021676.01.T01:CDS |
| GGACATATTCTGAACCATGA+AGG | 0.615918 | 4:-62829271 | None:intergenic |
| TGGATGGTGCCCCATACTTG+AGG | 0.620867 | 4:+62828667 | MsG0480021676.01.T01:CDS |
| CTAGGGAACAAATTGTAGGA+TGG | 0.620947 | 4:+62828538 | MsG0480021676.01.T01:intron |
| TGTTCATTGACTCTTGCAAG+AGG | 0.620974 | 4:+62829739 | MsG0480021676.01.T01:CDS |
| GATTATACATAAGCAAAGCA+AGG | 0.628971 | 4:-62830086 | None:intergenic |
| GGAGGAAAAGCACCACATTG+TGG | 0.629268 | 4:-62830065 | None:intergenic |
| AAAGATAGTTCCAACCAACA+AGG | 0.652975 | 4:+62827551 | MsG0480021676.01.T01:CDS |
| ATCCACTTTCCTCAAGTATG+GGG | 0.656738 | 4:-62828676 | None:intergenic |
| AGCACCACATTGTGGCACTG+AGG | 0.715353 | 4:-62830057 | None:intergenic |
| TATACATAAGCAAAGCAAGG+AGG | 0.720761 | 4:-62830083 | None:intergenic |
| GATGCCTCAGTGCCACAATG+TGG | 0.766027 | 4:+62830053 | MsG0480021676.01.T01:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACTTCAAAATTTATATT+TGG | - | Chr4:62828478-62828497 | None:intergenic | 10.0% |
| !!! | TATTTATTTTCTTTTATCAT+TGG | - | Chr4:62827808-62827827 | None:intergenic | 10.0% |
| !! | ACATATTATTCAAAAGTTTA+TGG | - | Chr4:62829400-62829419 | None:intergenic | 15.0% |
| !! | ATTTGATTATTTGAAAGTTT+AGG | + | Chr4:62829447-62829466 | MsG0480021676.01.T01:intron | 15.0% |
| !!! | AAATTTTGTGTTAAATTTCT+AGG | + | Chr4:62827720-62827739 | MsG0480021676.01.T01:intron | 15.0% |
| !!! | CTATATTACAAAAAAGTTTT+AGG | - | Chr4:62830133-62830152 | None:intergenic | 15.0% |
| !!! | GTTTTTATTTTTGTTGTTTT+AGG | + | Chr4:62829715-62829734 | MsG0480021676.01.T01:intron | 15.0% |
| !! | AGTTATGTACGTTTAAATAA+AGG | - | Chr4:62829032-62829051 | None:intergenic | 20.0% |
| !! | ATGGAAATTATATTACGAAA+AGG | + | Chr4:62829625-62829644 | MsG0480021676.01.T01:intron | 20.0% |
| !! | ATTGAAATAACTTCTACATA+AGG | - | Chr4:62827784-62827803 | None:intergenic | 20.0% |
| !! | ATTTAAACGTACATAACTAA+AGG | + | Chr4:62829034-62829053 | MsG0480021676.01.T01:intron | 20.0% |
| !! | GTATAAGCAATTATCATATA+AGG | + | Chr4:62827758-62827777 | MsG0480021676.01.T01:intron | 20.0% |
| !! | TTTAAACGTACATAACTAAA+GGG | + | Chr4:62829035-62829054 | MsG0480021676.01.T01:intron | 20.0% |
| !! | TTTAAAGGAGTGATATTAAT+AGG | + | Chr4:62829108-62829127 | MsG0480021676.01.T01:intron | 20.0% |
| !!! | AGATACTTTTTAAAACCATA+TGG | + | Chr4:62829861-62829880 | MsG0480021676.01.T01:intron | 20.0% |
| !!! | GTTATTTTCACAAACTATTA+TGG | + | Chr4:62827841-62827860 | MsG0480021676.01.T01:intron | 20.0% |
| !!! | TTAAATTTCTAGGCTTTATT+TGG | + | Chr4:62827730-62827749 | MsG0480021676.01.T01:intron | 20.0% |
| !!! | TTTCTTAGGTTTGTTAATAA+GGG | + | Chr4:62830217-62830236 | MsG0480021676.01.T01:three_prime_UTR | 20.0% |
| !!! | TTTTTATATAGTTTTTGGAC+CGG | + | Chr4:62829560-62829579 | MsG0480021676.01.T01:intron | 20.0% |
| ! | AATAAGCTGAAAACATTGTA+CGG | - | Chr4:62828316-62828335 | None:intergenic | 25.0% |
| ! | AATAGATAAACTCAAACAAG+AGG | - | Chr4:62828236-62828255 | None:intergenic | 25.0% |
| ! | AATTAAGTACTTATAGCAGA+AGG | - | Chr4:62828444-62828463 | None:intergenic | 25.0% |
| ! | ATTAAGTACTTATAGCAGAA+GGG | - | Chr4:62828443-62828462 | None:intergenic | 25.0% |
| ! | CATATTGTAATAAACCTTAG+AGG | + | Chr4:62829890-62829909 | MsG0480021676.01.T01:intron | 25.0% |
| ! | CTTATGATATTATCAGCTTA+TGG | - | Chr4:62827901-62827920 | None:intergenic | 25.0% |
| ! | CTTATGTATAATCCTACATA+TGG | + | Chr4:62830096-62830115 | MsG0480021676.01.T01:three_prime_UTR | 25.0% |
| ! | GAAGACAAAAATTAAACCAT+AGG | - | Chr4:62828509-62828528 | None:intergenic | 25.0% |
| ! | GAAGTTATAATCAAATCCTA+TGG | + | Chr4:62828490-62828509 | MsG0480021676.01.T01:intron | 25.0% |
| ! | GATGTTATATCACTATGATT+TGG | + | Chr4:62830402-62830421 | MsG0480021676.01.T01:three_prime_UTR | 25.0% |
| ! | TTAATGTTAGAGATAGAGAT+TGG | + | Chr4:62830297-62830316 | MsG0480021676.01.T01:three_prime_UTR | 25.0% |
| ! | TTTCTTCAAACCAATTTCAA+TGG | - | Chr4:62827534-62827553 | None:intergenic | 25.0% |
| !! | AACAACTAAACATCTTTTCT+AGG | - | Chr4:62828740-62828759 | None:intergenic | 25.0% |
| !! | ACAACTAAACATCTTTTCTA+GGG | - | Chr4:62828739-62828758 | None:intergenic | 25.0% |
| !! | TAGGTTTAAGATAACAATCT+CGG | + | Chr4:62828820-62828839 | MsG0480021676.01.T01:intron | 25.0% |
| !! | TTTAGGTTCAATTATTTAGC+CGG | - | Chr4:62829582-62829601 | None:intergenic | 25.0% |
| !! | TTTTCTCAAAGAAGTAACAA+TGG | + | Chr4:62827359-62827378 | MsG0480021676.01.T01:CDS | 25.0% |
| !!! | AAAGTGGATCTCAAATTTTT+TGG | + | Chr4:62828690-62828709 | MsG0480021676.01.T01:CDS | 25.0% |
| !!! | AAGCTATAAGTTGTTTTCAT+AGG | - | Chr4:62828362-62828381 | None:intergenic | 25.0% |
| !!! | GCTTAATGGTTTATTTTCAA+GGG | + | Chr4:62827487-62827506 | MsG0480021676.01.T01:CDS | 25.0% |
| !!! | GTTGTTTTCATAGGTTATTA+TGG | - | Chr4:62828353-62828372 | None:intergenic | 25.0% |
| !!! | GTTTCTTAGGTTTGTTAATA+AGG | + | Chr4:62830216-62830235 | MsG0480021676.01.T01:three_prime_UTR | 25.0% |
| !!! | TGCTTAATGGTTTATTTTCA+AGG | + | Chr4:62827486-62827505 | MsG0480021676.01.T01:CDS | 25.0% |
| !!! | TTTGTTTTGATGAATAGAGA+AGG | - | Chr4:62827149-62827168 | None:intergenic | 25.0% |
| !!! | TTTTGATGAATGAAAAGTGT+AGG | + | Chr4:62829185-62829204 | MsG0480021676.01.T01:intron | 25.0% |
| AAAATATGCACTTACTTCCA+TGG | - | Chr4:62829344-62829363 | None:intergenic | 30.0% | |
| AAGAAGAAGTCTCAGATATA+TGG | + | Chr4:62827623-62827642 | MsG0480021676.01.T01:CDS | 30.0% | |
| AAGAGGATCATTAACACTAT+AGG | - | Chr4:62828219-62828238 | None:intergenic | 30.0% | |
| ACAACACTGATACAATGAAA+CGG | - | Chr4:62828986-62829005 | None:intergenic | 30.0% | |
| ATAACGTTGTTGCGAATTAA+TGG | + | Chr4:62829606-62829625 | MsG0480021676.01.T01:intron | 30.0% | |
| ATCACCATCTTTATCTTCAT+AGG | - | Chr4:62829300-62829319 | None:intergenic | 30.0% | |
| ATGAAGATAAAGATGGTGAT+TGG | + | Chr4:62829300-62829319 | MsG0480021676.01.T01:CDS | 30.0% | |
| ATTTGAAAACATCTCGATGA+CGG | - | Chr4:62828958-62828977 | None:intergenic | 30.0% | |
| CAGTAAATCAACAATGAAAG+TGG | - | Chr4:62828070-62828089 | None:intergenic | 30.0% | |
| CCTTTATGTAAAAGTTAGCA+TGG | + | Chr4:62828647-62828666 | MsG0480021676.01.T01:CDS | 30.0% | |
| CTGTCTCAAATATCTCTTAA+AGG | + | Chr4:62829824-62829843 | MsG0480021676.01.T01:intron | 30.0% | |
| GATTATACATAAGCAAAGCA+AGG | - | Chr4:62830089-62830108 | None:intergenic | 30.0% | |
| GTTGACAATTAAGGTTTCTT+AGG | + | Chr4:62830203-62830222 | MsG0480021676.01.T01:three_prime_UTR | 30.0% | |
| GTTGATATTGTGGAGAATTA+CGG | + | Chr4:62828856-62828875 | MsG0480021676.01.T01:intron | 30.0% | |
| TAAAAATCTCCTTAGCTCAA+TGG | - | Chr4:62829092-62829111 | None:intergenic | 30.0% | |
| TAAACCTTAGAGGTCAAAAT+TGG | + | Chr4:62829900-62829919 | MsG0480021676.01.T01:intron | 30.0% | |
| TAAAGTTTCCACTACTACAA+TGG | + | Chr4:62827322-62827341 | MsG0480021676.01.T01:exon | 30.0% | |
| TACAATATGTACTTGCCATA+TGG | - | Chr4:62829879-62829898 | None:intergenic | 30.0% | |
| TACTCTTTATGCATGCTTAA+TGG | + | Chr4:62827473-62827492 | MsG0480021676.01.T01:CDS | 30.0% | |
| TATGTAAAAGTTAGCATGGA+TGG | + | Chr4:62828651-62828670 | MsG0480021676.01.T01:CDS | 30.0% | |
| TATTCAAAGCCAAGTGTTTA+GGG | - | Chr4:62830158-62830177 | None:intergenic | 30.0% | |
| TTATTATGGTTGAGAGCTTA+TGG | - | Chr4:62828339-62828358 | None:intergenic | 30.0% | |
| TTCTTTCAGGAAGAATTCAA+TGG | + | Chr4:62828572-62828591 | MsG0480021676.01.T01:CDS | 30.0% | |
| TTGAATTCTTCCTGAAAGAA+CGG | - | Chr4:62828572-62828591 | None:intergenic | 30.0% | |
| TTGTCTTCATTTCTGATCTA+GGG | + | Chr4:62828521-62828540 | MsG0480021676.01.T01:intron | 30.0% | |
| TTTGTCTTCATTTCTGATCT+AGG | + | Chr4:62828520-62828539 | MsG0480021676.01.T01:intron | 30.0% | |
| TTTGTGTGAAAGTAGATTGA+TGG | + | Chr4:62829244-62829263 | MsG0480021676.01.T01:CDS | 30.0% | |
| ! | AGAAGATCATTATTTCTCTC+TGG | - | Chr4:62827437-62827456 | None:intergenic | 30.0% |
| ! | AGGTTTAAGATAACAATCTC+GGG | + | Chr4:62828821-62828840 | MsG0480021676.01.T01:intron | 30.0% |
| ! | ATGAAAAGTGTAGGTCAATT+TGG | + | Chr4:62829194-62829213 | MsG0480021676.01.T01:intron | 30.0% |
| ! | CCATGCTAACTTTTACATAA+AGG | - | Chr4:62828650-62828669 | None:intergenic | 30.0% |
| ! | GCAACAACGTTATACATTTT+AGG | - | Chr4:62829599-62829618 | None:intergenic | 30.0% |
| ! | TGAGCTAAGGAGATTTTTAA+AGG | + | Chr4:62829093-62829112 | MsG0480021676.01.T01:intron | 30.0% |
| ! | TTTTCAGATGCCATTGAAAT+TGG | + | Chr4:62827521-62827540 | MsG0480021676.01.T01:CDS | 30.0% |
| !! | AAATCCAATTTTGACCTCTA+AGG | - | Chr4:62829907-62829926 | None:intergenic | 30.0% |
| !! | ATGAAAAGTTCTGAAGCAAT+TGG | + | Chr4:62829771-62829790 | MsG0480021676.01.T01:CDS | 30.0% |
| !! | ATGCTTGTTGTTGACAATTA+AGG | + | Chr4:62830194-62830213 | MsG0480021676.01.T01:three_prime_UTR | 30.0% |
| !! | TACATAAAGGCATCCAAATT+TGG | - | Chr4:62828637-62828656 | None:intergenic | 30.0% |
| !! | TAGTACCGACTTTAGATTTA+AGG | + | Chr4:62828910-62828929 | MsG0480021676.01.T01:intron | 30.0% |
| !! | TTATTTTCAAGGGCAAAAAG+AGG | + | Chr4:62827497-62827516 | MsG0480021676.01.T01:CDS | 30.0% |
| !!! | ATCATTCTTTTGAGATTGAG+TGG | - | Chr4:62828598-62828617 | None:intergenic | 30.0% |
| !!! | CAAATTTTTTGGCACTTACA+AGG | + | Chr4:62828701-62828720 | MsG0480021676.01.T01:CDS | 30.0% |
| AAAGATAGTTCCAACCAACA+AGG | + | Chr4:62827551-62827570 | MsG0480021676.01.T01:CDS | 35.0% | |
| AAGCACTTGTGAGACTATTT+AGG | + | Chr4:62828261-62828280 | MsG0480021676.01.T01:intron | 35.0% | |
| AATATAGTGCCCTAAACACT+TGG | + | Chr4:62830146-62830165 | MsG0480021676.01.T01:three_prime_UTR | 35.0% | |
| AGAACTTTCCATTGTAGTAG+TGG | - | Chr4:62827333-62827352 | None:intergenic | 35.0% | |
| AGATGTTATGTTGCTATGGT+TGG | + | Chr4:62830380-62830399 | MsG0480021676.01.T01:three_prime_UTR | 35.0% | |
| AGCTTATGGAAAATCGCTTA+CGG | - | Chr4:62827887-62827906 | None:intergenic | 35.0% | |
| CATCTTTATCTTCATAGGTG+AGG | - | Chr4:62829295-62829314 | None:intergenic | 35.0% | |
| CTATTCAAAGCCAAGTGTTT+AGG | - | Chr4:62830159-62830178 | None:intergenic | 35.0% | |
| CTCACCTATGAAGATAAAGA+TGG | + | Chr4:62829293-62829312 | MsG0480021676.01.T01:CDS | 35.0% | |
| CTTGAGATGTTATGTTGCTA+TGG | + | Chr4:62830376-62830395 | MsG0480021676.01.T01:three_prime_UTR | 35.0% | |
| GACACTATGATTCCATATGT+AGG | - | Chr4:62830111-62830130 | None:intergenic | 35.0% | |
| GACTTCTTCTTCTCATTCAA+AGG | - | Chr4:62827614-62827633 | None:intergenic | 35.0% | |
| GATGATGTAGAAGCCAAATT+TGG | + | Chr4:62828621-62828640 | MsG0480021676.01.T01:CDS | 35.0% | |
| GTACATAACTAAAGGGTAGT+TGG | + | Chr4:62829042-62829061 | MsG0480021676.01.T01:intron | 35.0% | |
| TATACATAAGCAAAGCAAGG+AGG | - | Chr4:62830086-62830105 | None:intergenic | 35.0% | |
| TGATCTAGGGAACAAATTGT+AGG | + | Chr4:62828534-62828553 | MsG0480021676.01.T01:intron | 35.0% | |
| ! | ACACGCCTTAAATCTAAAGT+CGG | - | Chr4:62828918-62828937 | None:intergenic | 35.0% |
| ! | AGTGCATATTTTGTCTCACA+TGG | + | Chr4:62829352-62829371 | MsG0480021676.01.T01:intron | 35.0% |
| ! | GTAGTTGGTTCATATGCTAA+GGG | + | Chr4:62829057-62829076 | MsG0480021676.01.T01:intron | 35.0% |
| !! | AGTTCTGAAGCAATTGGATT+AGG | + | Chr4:62829777-62829796 | MsG0480021676.01.T01:CDS | 35.0% |
| AAGGCTACTGAGTTAAGACT+TGG | + | Chr4:62827392-62827411 | MsG0480021676.01.T01:CDS | 40.0% | |
| AGAGAGAGAGAGTTGAATAG+TGG | - | Chr4:62827193-62827212 | None:intergenic | 40.0% | |
| AGATCCACTTTCCTCAAGTA+TGG | - | Chr4:62828681-62828700 | None:intergenic | 40.0% | |
| ATCCACTTTCCTCAAGTATG+GGG | - | Chr4:62828679-62828698 | None:intergenic | 40.0% | |
| CGTCATGATCGTTGATATTG+TGG | + | Chr4:62828846-62828865 | MsG0480021676.01.T01:intron | 40.0% | |
| CTAGGGAACAAATTGTAGGA+TGG | + | Chr4:62828538-62828557 | MsG0480021676.01.T01:intron | 40.0% | |
| GATCCACTTTCCTCAAGTAT+GGG | - | Chr4:62828680-62828699 | None:intergenic | 40.0% | |
| GGACATATTCTGAACCATGA+AGG | - | Chr4:62829274-62829293 | None:intergenic | 40.0% | |
| TAACAATGGCTTGAACCTCA+AGG | + | Chr4:62827373-62827392 | MsG0480021676.01.T01:CDS | 40.0% | |
| TGGAGAATTACGGTAAAACG+CGG | + | Chr4:62828866-62828885 | MsG0480021676.01.T01:intron | 40.0% | |
| TTCTTCCTGAAAGAACGGAT+TGG | - | Chr4:62828567-62828586 | None:intergenic | 40.0% | |
| TTGACTCTTGCAAGAGGTTA+AGG | + | Chr4:62829745-62829764 | MsG0480021676.01.T01:CDS | 40.0% | |
| ! | AGATTGATGGATCTCCTTCA+TGG | + | Chr4:62829257-62829276 | MsG0480021676.01.T01:CDS | 40.0% |
| ! | GAGTTAAGACTTGGTTTACC+TGG | + | Chr4:62827401-62827420 | MsG0480021676.01.T01:CDS | 40.0% |
| ! | GGTAGTTGGTTCATATGCTA+AGG | + | Chr4:62829056-62829075 | MsG0480021676.01.T01:intron | 40.0% |
| ! | TCTCATTTTGCTTGTGCACT+AGG | + | Chr4:62828801-62828820 | MsG0480021676.01.T01:intron | 40.0% |
| ! | TGGTTGATTCCATTGAGCTA+AGG | + | Chr4:62829080-62829099 | MsG0480021676.01.T01:intron | 40.0% |
| !! | TGTTCATTGACTCTTGCAAG+AGG | + | Chr4:62829739-62829758 | MsG0480021676.01.T01:CDS | 40.0% |
| !! | TTGGTGCTGCATAAATCAGA+TGG | - | Chr4:62829995-62830014 | None:intergenic | 40.0% |
| !!! | TCTCATGGAGTTTTTGGTCA+AGG | + | Chr4:62829218-62829237 | MsG0480021676.01.T01:CDS | 40.0% |
| !!! | TTTGGCTCTCATGGAGTTTT+TGG | + | Chr4:62829212-62829231 | MsG0480021676.01.T01:CDS | 40.0% |
| AGTGTTGTGTCCGATGTTTG+TGG | + | Chr4:62828998-62829017 | MsG0480021676.01.T01:intron | 45.0% | |
| CACAACAGAACCTTGTTGGT+TGG | - | Chr4:62827564-62827583 | None:intergenic | 45.0% | |
| CCAACAAGGTTCTGTTGTGA+AGG | + | Chr4:62827565-62827584 | MsG0480021676.01.T01:CDS | 45.0% | |
| CCTTCACAACAGAACCTTGT+TGG | - | Chr4:62827568-62827587 | None:intergenic | 45.0% | |
| GATGGTGATTGGATGCTAGT+TGG | + | Chr4:62829311-62829330 | MsG0480021676.01.T01:CDS | 45.0% | |
| ! | GCGACTTTTGCACTTTTCCA+TGG | - | Chr4:62830021-62830040 | None:intergenic | 45.0% |
| ! | GTCTTAACTCAGTAGCCTTG+AGG | - | Chr4:62827391-62827410 | None:intergenic | 45.0% |
| ! | GTTGGTTCATATGCTAAGGG+TGG | + | Chr4:62829060-62829079 | MsG0480021676.01.T01:intron | 45.0% |
| ! | TTGCACTTTTCCATGGCTCT+TGG | - | Chr4:62830014-62830033 | None:intergenic | 45.0% |
| !! | GTAGGTCAATTTGGCTCTCA+TGG | + | Chr4:62829203-62829222 | MsG0480021676.01.T01:intron | 45.0% |
| !! | TGCTAGTTGGTGATGTTCCA+TGG | + | Chr4:62829324-62829343 | MsG0480021676.01.T01:CDS | 45.0% |
| !! | TTCCTGAAAGAACGGATTGG+TGG | - | Chr4:62828564-62828583 | None:intergenic | 45.0% |
| !! | TAAAAATAAAGAATTTATAT+TGG | + | Chr4:62829958-62829977 | MsG0480021676.01.T01:intron | 5.0% |
| !!! | AAATTTTTTTATATAGTTTT+TGG | + | Chr4:62829555-62829574 | MsG0480021676.01.T01:intron | 5.0% |
| CTCTCTGGTGATTCAGAACC+AGG | - | Chr4:62827422-62827441 | None:intergenic | 50.0% | |
| GGCCTAACAGCCACAAACAT+CGG | - | Chr4:62829011-62829030 | None:intergenic | 50.0% | |
| GTCCGATGTTTGTGGCTGTT+AGG | + | Chr4:62829006-62829025 | MsG0480021676.01.T01:intron | 50.0% | |
| TGCCCCATACTTGAGGAAAG+TGG | + | Chr4:62828674-62828693 | MsG0480021676.01.T01:CDS | 50.0% | |
| TTATGCAGCACCAAGAGCCA+TGG | + | Chr4:62830001-62830020 | MsG0480021676.01.T01:intron | 50.0% | |
| !! | GGAGGAAAAGCACCACATTG+TGG | - | Chr4:62830068-62830087 | None:intergenic | 50.0% |
| AGCACCACATTGTGGCACTG+AGG | - | Chr4:62830060-62830079 | None:intergenic | 55.0% | |
| GATGCCTCAGTGCCACAATG+TGG | + | Chr4:62830053-62830072 | MsG0480021676.01.T01:three_prime_UTR | 55.0% | |
| GGCCACCAATCCGTTCTTTC+AGG | + | Chr4:62828559-62828578 | MsG0480021676.01.T01:CDS | 55.0% | |
| TGGATGGTGCCCCATACTTG+AGG | + | Chr4:62828667-62828686 | MsG0480021676.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 62827138 | 62830432 | 62827138 | ID=MsG0480021676.01;Name=MsG0480021676.01 |
| Chr4 | mRNA | 62827138 | 62830432 | 62827138 | ID=MsG0480021676.01.T01;Parent=MsG0480021676.01;Name=MsG0480021676.01.T01;_AED=0.30;_eAED=0.30;_QI=165|0.8|0.83|1|0.6|0.33|6|386|270 |
| Chr4 | exon | 62827138 | 62827200 | 62827138 | ID=MsG0480021676.01.T01:exon:36002;Parent=MsG0480021676.01.T01 |
| Chr4 | exon | 62827239 | 62827657 | 62827239 | ID=MsG0480021676.01.T01:exon:36003;Parent=MsG0480021676.01.T01 |
| Chr4 | exon | 62828542 | 62828768 | 62828542 | ID=MsG0480021676.01.T01:exon:36004;Parent=MsG0480021676.01.T01 |
| Chr4 | exon | 62829207 | 62829348 | 62829207 | ID=MsG0480021676.01.T01:exon:36005;Parent=MsG0480021676.01.T01 |
| Chr4 | exon | 62829737 | 62829825 | 62829737 | ID=MsG0480021676.01.T01:exon:36006;Parent=MsG0480021676.01.T01 |
| Chr4 | exon | 62830009 | 62830432 | 62830009 | ID=MsG0480021676.01.T01:exon:36007;Parent=MsG0480021676.01.T01 |
| Chr4 | five_prime_UTR | 62827138 | 62827200 | 62827138 | ID=MsG0480021676.01.T01:five_prime_utr;Parent=MsG0480021676.01.T01 |
| Chr4 | five_prime_UTR | 62827239 | 62827340 | 62827239 | ID=MsG0480021676.01.T01:five_prime_utr;Parent=MsG0480021676.01.T01 |
| Chr4 | CDS | 62827341 | 62827657 | 62827341 | ID=MsG0480021676.01.T01:cds;Parent=MsG0480021676.01.T01 |
| Chr4 | CDS | 62828542 | 62828768 | 62828542 | ID=MsG0480021676.01.T01:cds;Parent=MsG0480021676.01.T01 |
| Chr4 | CDS | 62829207 | 62829348 | 62829207 | ID=MsG0480021676.01.T01:cds;Parent=MsG0480021676.01.T01 |
| Chr4 | CDS | 62829737 | 62829825 | 62829737 | ID=MsG0480021676.01.T01:cds;Parent=MsG0480021676.01.T01 |
| Chr4 | CDS | 62830009 | 62830046 | 62830009 | ID=MsG0480021676.01.T01:cds;Parent=MsG0480021676.01.T01 |
| Chr4 | three_prime_UTR | 62830047 | 62830432 | 62830047 | ID=MsG0480021676.01.T01:three_prime_utr;Parent=MsG0480021676.01.T01 |
| Gene Sequence |
| Protein sequence |
