AlfalfaGEDB | MsG0480021676.01

M. sativa cultivar ZhongmuNo.1 / MsG0480021676.01

KEGG: K14484
GO: GO:0005515
PFAM: PF02309

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021676.01.T01	XP_013453119.1	87.407	270	18	3	1	270	1	254	1.90E-167	473

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021676.01.T01	Q9ZSY8	58.983	295	78	10	4	270	26	305	4.49E-99	295

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021676.01.T01	A0A072UBZ5	87.407	270	18	3	1	270	1	254	9.07e-168	473

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsG0480021676.01.T01	TR	AUX/IAA

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280007432.01	MsG0480021676.01	0.802457	5.559367e-49	2.724596e-46
MsG0280007955.01	MsG0480021676.01	0.814224	1.718288e-51	1.146240e-48
MsG0380015891.01	MsG0480021676.01	0.803245	3.822702e-49	1.911449e-46
MsG0480018236.01	MsG0480021676.01	0.810705	1.009308e-50	6.127632e-48
MsG0480020832.01	MsG0480021676.01	0.829231	5.778075e-55	5.878304e-52
MsG0480021676.01	MsG0580025407.01	-0.815558	8.694035e-52	6.013871e-49
MsG0480021676.01	MsG0580025612.01	0.803505	3.375680e-49	1.699355e-46
MsG0480021676.01	MsG0580026304.01	0.802237	6.172524e-49	3.008141e-46
MsG0480021676.01	MsG0580027925.01	0.803397	3.554212e-49	1.784226e-46
MsG0480021676.01	MsG0680035708.01	0.959051	5.110420e-117	1.984126e-111

Showing 1 to 10 of 21 entries

Previous1 2 3Next

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0480021676.01	MsG0580028330.01	PPI

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021676.01.T01	MTR_6g488150	87.407	270	18	3	1	270	1	254	2.30e-171	473
MsG0480021676.01.T01	MTR_6g488150	86.957	184	17	2	1	184	1	177	1.58e-110	317
MsG0480021676.01.T01	MTR_8g103030	60.959	292	58	8	14	270	23	293	1.35e-107	313
MsG0480021676.01.T01	MTR_8g067530	53.512	299	95	7	7	270	67	356	9.56e-94	280
MsG0480021676.01.T01	MTR_5g030710	52.881	295	90	8	15	270	51	335	6.66e-93	278
MsG0480021676.01.T01	MTR_2g101500	49.844	321	87	10	10	270	20	326	5.08e-87	262
MsG0480021676.01.T01	MTR_5g067350	50.327	306	95	11	7	270	57	347	1.49e-82	251
MsG0480021676.01.T01	MTR_1g093240	48.872	266	93	7	13	270	6	236	1.96e-72	222
MsG0480021676.01.T01	MTR_1g080860	47.388	268	98	7	15	269	15	252	1.14e-68	213
MsG0480021676.01.T01	MTR_1g093240	49.593	246	90	6	13	250	6	225	9.75e-68	210

Showing 1 to 10 of 34 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021676.01.T01	AT4G29080	58.983	295	78	10	4	270	26	305	4.57e-100	295
MsG0480021676.01.T01	AT2G22670	48.582	282	108	8	15	269	47	318	2.86e-79	242
MsG0480021676.01.T01	AT2G22670	48.582	282	108	8	15	269	47	318	2.86e-79	242
MsG0480021676.01.T01	AT2G22670	48.582	282	108	8	15	269	64	335	3.17e-79	243
MsG0480021676.01.T01	AT2G22670	50.570	263	102	7	15	250	47	308	3.85e-79	242
MsG0480021676.01.T01	AT2G22670	50.570	263	102	7	15	250	47	308	3.85e-79	242
MsG0480021676.01.T01	AT5G65670	48.239	284	111	4	15	269	61	337	5.80e-78	239
MsG0480021676.01.T01	AT5G65670	48.239	284	109	4	15	269	61	335	7.81e-78	239
MsG0480021676.01.T01	AT3G04730	46.909	275	87	8	15	270	2	236	9.10e-72	220
MsG0480021676.01.T01	AT4G14550	47.893	261	98	7	15	270	1	228	2.61e-70	216

Showing 1 to 10 of 49 entries

Previous1 2 3 4 5Next

Find 67 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATGCACTTACTTCCA+TGG	0.525031	4:-62829341	None:intergenic
AAAGATAGTTCCAACCAACA+AGG	0.652975	4:+62827551	MsG0480021676.01.T01:CDS
AAGAAGAAGTCTCAGATATA+TGG	0.397635	4:+62827623	MsG0480021676.01.T01:CDS
AAGGCTACTGAGTTAAGACT+TGG	0.551451	4:+62827392	MsG0480021676.01.T01:CDS
AATATAGTGCCCTAAACACT+TGG	0.526724	4:+62830146	MsG0480021676.01.T01:three_prime_UTR
AGAACTTTCCATTGTAGTAG+TGG	0.527264	4:-62827330	None:intergenic
AGAAGATCATTATTTCTCTC+TGG	0.419570	4:-62827434	None:intergenic
AGATCCACTTTCCTCAAGTA+TGG	0.227669	4:-62828678	None:intergenic
AGATGTTATGTTGCTATGGT+TGG	0.423102	4:+62830380	MsG0480021676.01.T01:three_prime_UTR
AGATTGATGGATCTCCTTCA+TGG	0.440946	4:+62829257	MsG0480021676.01.T01:CDS

Showing 1 to 10 of 67 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATATGCACTTACTTCCA+TGG	-	Chr4:62829344-62829363	None:intergenic	30.0%
AAGAAGAAGTCTCAGATATA+TGG	+	Chr4:62827623-62827642	MsG0480021676.01.T01:CDS	30.0%
AAGAGGATCATTAACACTAT+AGG	-	Chr4:62828219-62828238	None:intergenic	30.0%
ACAACACTGATACAATGAAA+CGG	-	Chr4:62828986-62829005	None:intergenic	30.0%
ATAACGTTGTTGCGAATTAA+TGG	+	Chr4:62829606-62829625	MsG0480021676.01.T01:intron	30.0%
ATCACCATCTTTATCTTCAT+AGG	-	Chr4:62829300-62829319	None:intergenic	30.0%
ATGAAGATAAAGATGGTGAT+TGG	+	Chr4:62829300-62829319	MsG0480021676.01.T01:CDS	30.0%
ATTTGAAAACATCTCGATGA+CGG	-	Chr4:62828958-62828977	None:intergenic	30.0%
CAGTAAATCAACAATGAAAG+TGG	-	Chr4:62828070-62828089	None:intergenic	30.0%
CCTTTATGTAAAAGTTAGCA+TGG	+	Chr4:62828647-62828666	MsG0480021676.01.T01:CDS	30.0%

Showing 1 to 10 of 151 entries

Previous1 2 3 4 5…16Next

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	62827138	62830432	62827138	ID=MsG0480021676.01;Name=MsG0480021676.01
Chr4	mRNA	62827138	62830432	62827138	ID=MsG0480021676.01.T01;Parent=MsG0480021676.01;Name=MsG0480021676.01.T01;_AED=0.30;_eAED=0.30;_QI=165\|0.8\|0.83\|1\|0.6\|0.33\|6\|386\|270
Chr4	exon	62827138	62827200	62827138	ID=MsG0480021676.01.T01:exon:36002;Parent=MsG0480021676.01.T01
Chr4	exon	62827239	62827657	62827239	ID=MsG0480021676.01.T01:exon:36003;Parent=MsG0480021676.01.T01
Chr4	exon	62828542	62828768	62828542	ID=MsG0480021676.01.T01:exon:36004;Parent=MsG0480021676.01.T01
Chr4	exon	62829207	62829348	62829207	ID=MsG0480021676.01.T01:exon:36005;Parent=MsG0480021676.01.T01
Chr4	exon	62829737	62829825	62829737	ID=MsG0480021676.01.T01:exon:36006;Parent=MsG0480021676.01.T01
Chr4	exon	62830009	62830432	62830009	ID=MsG0480021676.01.T01:exon:36007;Parent=MsG0480021676.01.T01
Chr4	five_prime_UTR	62827138	62827200	62827138	ID=MsG0480021676.01.T01:five_prime_utr;Parent=MsG0480021676.01.T01
Chr4	five_prime_UTR	62827239	62827340	62827239	ID=MsG0480021676.01.T01:five_prime_utr;Parent=MsG0480021676.01.T01
Chr4	CDS	62827341	62827657	62827341	ID=MsG0480021676.01.T01:cds;Parent=MsG0480021676.01.T01
Chr4	CDS	62828542	62828768	62828542	ID=MsG0480021676.01.T01:cds;Parent=MsG0480021676.01.T01
Chr4	CDS	62829207	62829348	62829207	ID=MsG0480021676.01.T01:cds;Parent=MsG0480021676.01.T01
Chr4	CDS	62829737	62829825	62829737	ID=MsG0480021676.01.T01:cds;Parent=MsG0480021676.01.T01
Chr4	CDS	62830009	62830046	62830009	ID=MsG0480021676.01.T01:cds;Parent=MsG0480021676.01.T01
Chr4	three_prime_UTR	62830047	62830432	62830047	ID=MsG0480021676.01.T01:three_prime_utr;Parent=MsG0480021676.01.T01

Gene Sequence

>MsG0480021676.01.T01

ATGGAAAGTTCTGACAAATTTTCTCAAAGAAGTAACAATGGCTTGAACCTCAAGGCTACTGAGTTAAGACTTGGTTTACCTGGTTCTGAATCACCAGAGAGAAATAATGATCTTCTTGAAGAAAAAAATGCATACTCTTTATGCATGCTTAATGGTTTATTTTCAAGGGCAAAAAGAGGTTTTTCAGATGCCATTGAAATTGGTTTGAAGAAAGATAGTTCCAACCAACAAGGTTCTGTTGTGAAGGATAGAATTCAACAGTCTTCAAATCCTTTGAATGAGAAGAAGAAGTCTCAGATATATGGTTCAGCTGCAAAGGAACAAATTGTAGGATGGCCACCAATCCGTTCTTTCAGGAAGAATTCAATGGCCACTCAATCTCAAAAGAATGATAATGATGATGTAGAAGCCAAATTTGGATGCCTTTATGTAAAAGTTAGCATGGATGGTGCCCCATACTTGAGGAAAGTGGATCTCAAATTTTTTGGCACTTACAAGGAACTATCTTCTGCCCTAGAAAAGATGTTTAGTTGTTTTACAATCAGTCAATTTGGCTCTCATGGAGTTTTTGGTCAAGGTAATTTGTGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTCCTCACCTATGAAGATAAAGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGAAGATGTTCATTGACTCTTGCAAGAGGTTAAGGATAATGAAAAGTTCTGAAGCAATTGGATTAGGTGAGTCTCACATATATGATAATCTCTCACCAAGAGCCATGGAAAAGTGCAAAAGTCGCAACTAG

Protein sequence

>MsG0480021676.01.T01

MESSDKFSQRSNNGLNLKATELRLGLPGSESPERNNDLLEEKNAYSLCMLNGLFSRAKRGFSDAIEIGLKKDSSNQQGSVVKDRIQQSSNPLNEKKKSQIYGSAAKEQIVGWPPIRSFRKNSMATQSQKNDNDDVEAKFGCLYVKVSMDGAPYLRKVDLKFFGTYKELSSALEKMFSCFTISQFGSHGVFGQGNLCESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWKMFIDSCKRLRIMKSSEAIGLGESHIYDNLSPRAMEKCKSRN*