AlfalfaGEDB | MsG0780037341.01

M. sativa cultivar ZhongmuNo.1 / MsG0780037341.01

KEGG: -
GO: GO:0005515
PFAM: PF06203

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037341.01.T01	XP_003622266.1	86.704	361	24	7	1	349	1	349	0	523

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037341.01.T01	Q9LU68	42.623	122	35	4	228	349	337	423	6.93E-18	87.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037341.01.T01	G7L5C3	86.704	361	24	7	1	349	1	349	0.0	523

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TFs/TRs:

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Gene ID	Type	Classification
MsG0780037341.01.T01	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047899.01	MsG0780037341.01	0.835879	1.297640e-56	1.607952e-53
MsG0080048001.01	MsG0780037341.01	0.810575	1.076547e-50	6.513051e-48
MsG0080048727.01	MsG0780037341.01	0.812612	3.884215e-51	2.481008e-48
MsG0080048773.01	MsG0780037341.01	0.877158	7.864109e-69	3.914908e-65
MsG0080048849.01	MsG0780037341.01	0.813448	2.546932e-51	1.663782e-48
MsG0080048878.01	MsG0780037341.01	0.825504	4.521933e-54	4.129259e-51
MsG0080049002.01	MsG0780037341.01	0.808380	3.185980e-50	1.818996e-47
MsG0080049040.01	MsG0780037341.01	0.834595	2.737781e-56	3.264271e-53
MsG0080049068.01	MsG0780037341.01	0.849351	3.418247e-60	6.462645e-57
MsG0180000038.01	MsG0780037341.01	0.816833	4.510630e-52	3.230859e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037341.01.T01	MTR_7g032240	86.704	361	24	7	1	349	1	349	0.0	523
MsG0780037341.01.T01	MTR_5g072780	36.800	125	46	2	225	349	123	214	1.49e-16	78.2
MsG0780037341.01.T01	MTR_8g104190	33.918	171	63	7	193	355	276	404	4.78e-16	79.3
MsG0780037341.01.T01	MTR_4g127420	38.793	116	42	3	231	346	293	379	1.32e-15	77.8
MsG0780037341.01.T01	MTR_1g110870	37.879	132	49	5	226	349	316	422	5.89e-15	75.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037341.01.T01	AT5G14370	37.228	368	178	16	1	349	1	334	2.30e-42	150
MsG0780037341.01.T01	AT5G57180	43.697	119	32	4	228	346	337	420	4.39e-19	88.2
MsG0780037341.01.T01	AT5G57180	42.623	122	35	4	228	349	337	423	7.06e-19	87.8
MsG0780037341.01.T01	AT1G73870	39.850	133	49	5	225	349	276	385	1.55e-17	83.6
MsG0780037341.01.T01	AT4G25990	38.710	124	33	2	228	346	293	378	2.89e-17	82.4
MsG0780037341.01.T01	AT4G25990	38.710	124	33	2	228	346	293	378	5.80e-17	82.0
MsG0780037341.01.T01	AT4G25990	37.795	127	36	2	228	349	293	381	7.20e-17	81.6
MsG0780037341.01.T01	AT1G25440	38.095	126	59	4	226	349	293	401	1.30e-14	75.1
MsG0780037341.01.T01	AT1G07050	82.051	39	7	0	308	346	150	188	2.90e-14	71.2
MsG0780037341.01.T01	AT1G07050	76.190	42	10	0	308	349	150	191	5.43e-14	70.5

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Find 70 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAAGAGTAGAATAA+TGG	0.338449	7:+23927982	None:intergenic
AAACGTAGACTAAGATACTT+CGG	0.605564	7:+23927673	None:intergenic
AAAGGTTCTCTTTATGTTGA+TGG	0.373469	7:-23927136	MsG0780037341.01.T01:CDS
AACAAATCAGGAACAGTCTG+AGG	0.616030	7:+23927100	None:intergenic
AACAGCGGTGATGACGACGA+CGG	0.737423	7:-23927419	MsG0780037341.01.T01:CDS
AACGAAGAAGGAAATGATGG+AGG	0.585427	7:-23927257	MsG0780037341.01.T01:CDS
AAGAAATGGGTTGGAAGCTT+GGG	0.434227	7:-23925695	MsG0780037341.01.T01:CDS
AAGAGTAGAATAATGGAGTG+GGG	0.581261	7:+23927989	None:intergenic
ACCAACCCTTGATCCATCAC+CGG	0.584061	7:+23927361	None:intergenic
ACCAGATATGTCTAAATGCA+TGG	0.589382	7:+23925537	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACGTAGACTAAGATACTT+CGG	+	Chr7:23925892-23925911	None:intergenic	30.0%
AAAGGTTCTCTTTATGTTGA+TGG	-	Chr7:23926426-23926445	MsG0780037341.01.T01:intron	30.0%
AAGCTATTTGGTATTTGTAC+AGG	-	Chr7:23927751-23927770	MsG0780037341.01.T01:CDS	30.0%
AGCTAACAATAACAATGTGA+AGG	-	Chr7:23927838-23927857	MsG0780037341.01.T01:CDS	30.0%
GAAATATATCACAACCAAAC+AGG	+	Chr7:23927279-23927298	None:intergenic	30.0%
GAAGTTAATAGTACTTGTGT+TGG	-	Chr7:23926327-23926346	MsG0780037341.01.T01:intron	30.0%
GGCTAAAATCATGAACTAAA+TGG	+	Chr7:23926820-23926839	None:intergenic	30.0%
GGTATTTGTACAGGTAATAT+GGG	-	Chr7:23927760-23927779	MsG0780037341.01.T01:CDS	30.0%
TGGTATTTGTACAGGTAATA+TGG	-	Chr7:23927759-23927778	MsG0780037341.01.T01:CDS	30.0%
TGGTGTGACAAAGATTATTA+TGG	-	Chr7:23927610-23927629	MsG0780037341.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	23925548	23928036	23925548	ID=MsG0780037341.01;Name=MsG0780037341.01
Chr7	mRNA	23925548	23928036	23925548	ID=MsG0780037341.01.T01;Parent=MsG0780037341.01;Name=MsG0780037341.01.T01;_AED=0.37;_eAED=0.38;_QI=155\|1\|0.5\|1\|1\|1\|2\|0\|355
Chr7	exon	23927078	23928036	23927078	ID=MsG0780037341.01.T01:exon:31977;Parent=MsG0780037341.01.T01
Chr7	exon	23925548	23925811	23925548	ID=MsG0780037341.01.T01:exon:31978;Parent=MsG0780037341.01.T01
Chr7	five_prime_UTR	23927882	23928036	23927882	ID=MsG0780037341.01.T01:five_prime_utr;Parent=MsG0780037341.01.T01
Chr7	CDS	23927078	23927881	23927078	ID=MsG0780037341.01.T01:cds;Parent=MsG0780037341.01.T01
Chr7	CDS	23925548	23925811	23925548	ID=MsG0780037341.01.T01:cds;Parent=MsG0780037341.01.T01

Gene Sequence

>MsG0780037341.01.T01

ATGTGTAACAAGAATAGTAGTACTCTTTCACCACCAAAAACAAAAGCAAAAACAAAAACAAAATCTATTACTATGAAGAAGAGAAAGAGACAAACCAAAAAAAATATATGTTCATCAATTTCACCTTCTTCATCTTCCTCTTCCTCTTCACTAAAATCACGTAGAAACAAAACAAAAAGAAAAAAACCGAAGTATCTTAGTCTACGTTTACAGCTCTCAAAAACAGAAAAAAACAAAGACCAACCCAAAAACAGCAACAACAACAACAAAAAAACACAAAAACAAGAACAACAACAACAACAACCGAATCTGTTTGCTCATCATCATCATCATCACGATACCGAACACGACATGCACGAAGAAAACAATGTAGCGTTACTCTTCACATCCGACGGTGGAGCAACGCTAAACGGTCTTCTAGAAAATGAATCGACTACGTTAACAGCGGTGATGACGACGACGGAGGAAGAGGAGGAGTCATTGTCAGTGATGAGGTGTCCGGTGATGGATCAAGGGTTGGTGAGGAAAGCAATGAGGAGGAAGAGGAATGATCATGAAGAGAGTGAAGAGAGATGGGTGAGTTATTCAGAAGTTGTTGAAGAAACGAAGAAGGAAATGATGGAGGAAGTTAATAGTACTTGTGTTGGATTTGAAACGACGTCGTTTTTTGGGTCTTTGAGTTTGAAGCTTGATCATGATGGGATATTGAATGCTTGGTCTGATAAAGGTTCTCTTTATGTTGATGGTTGTGATGAGGCTCCTCAGACTGTTCCTGATTTGTTCAATGGTTCCATCCCTCCCAATGTAATATGGGATGGTTATGGGTGTGATGTTAATGGGAACACATGGAAAGTTCCTGAAGTTGTTGGAGCTAACAATAACAATGTGAAGGTGAAGGAAGAAATGGGTTGGAAGCTTGGGCAGAGAGAGGCAAGTTTGTTGAGATACAAAGAGAAGAGGCAAAGCAGACTCTTTGCTAAGAGAATCCGTTATGAAGTTCGCAAGTTGAATGCTGAAAAACGGCCGAGGATGAAGGTACTATTTCTAACTTCATCACCATGCATTTAG

Protein sequence

>MsG0780037341.01.T01

MCNKNSSTLSPPKTKAKTKTKSITMKKRKRQTKKNICSSISPSSSSSSSSLKSRRNKTKRKKPKYLSLRLQLSKTEKNKDQPKNSNNNNKKTQKQEQQQQQPNLFAHHHHHHDTEHDMHEENNVALLFTSDGGATLNGLLENESTTLTAVMTTTEEEEESLSVMRCPVMDQGLVRKAMRRKRNDHEESEERWVSYSEVVEETKKEMMEEVNSTCVGFETTSFFGSLSLKLDHDGILNAWSDKGSLYVDGCDEAPQTVPDLFNGSIPPNVIWDGYGCDVNGNTWKVPEVVGANNNNVKVKEEMGWKLGQREASLLRYKEKRQSRLFAKRIRYEVRKLNAEKRPRMKVLFLTSSPCI*