Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041149.01.T01 | XP_013450120.1 | 97.696 | 217 | 4 | 1 | 1 | 216 | 1 | 217 | 6.84E-146 | 415 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041149.01.T01 | A0A072U4S8 | 97.696 | 217 | 4 | 1 | 1 | 216 | 1 | 217 | 3.27e-146 | 415 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047869.01 | MsG0780041149.01 | -0.804939 | 1.697700e-49 | 8.867948e-47 |
| MsG0180000470.01 | MsG0780041149.01 | -0.825357 | 4.899651e-54 | 4.455540e-51 |
| MsG0180001063.01 | MsG0780041149.01 | -0.833292 | 5.800484e-56 | 6.650670e-53 |
| MsG0180002842.01 | MsG0780041149.01 | -0.803021 | 4.252083e-49 | 2.113924e-46 |
| MsG0180004926.01 | MsG0780041149.01 | -0.813130 | 2.991273e-51 | 1.936976e-48 |
| MsG0780041149.01 | MsG0780041456.01 | -0.828952 | 6.752296e-55 | 6.812375e-52 |
| MsG0780041149.01 | MsG0780041507.01 | -0.802342 | 5.872261e-49 | 2.869553e-46 |
| MsG0780041149.01 | MsG0880042294.01 | -0.805469 | 1.315267e-49 | 6.963972e-47 |
| MsG0780041149.01 | MsG0880044455.01 | 0.807337 | 5.310850e-50 | 2.950316e-47 |
| MsG0780041149.01 | MsG0880044574.01 | -0.816520 | 5.301963e-52 | 3.765222e-49 |
| MsG0780041149.01 | MsG0880045937.01 | -0.809068 | 2.270819e-50 | 1.320165e-47 |
| MsG0280011175.01 | MsG0780041149.01 | -0.806427 | 8.268322e-50 | 4.486607e-47 |
| MsG0480022985.01 | MsG0780041149.01 | -0.804815 | 1.802167e-49 | 9.383537e-47 |
| MsG0580024363.01 | MsG0780041149.01 | 0.821343 | 4.247716e-53 | 3.446626e-50 |
| MsG0580026098.01 | MsG0780041149.01 | -0.802631 | 5.118110e-49 | 2.519480e-46 |
| MsG0580028990.01 | MsG0780041149.01 | -0.801668 | 8.078767e-49 | 3.880516e-46 |
| MsG0280009395.01 | MsG0780041149.01 | 0.800921 | 1.148655e-48 | 5.414578e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041149.01.T01 | MTR_7g105130 | 97.696 | 217 | 4 | 1 | 1 | 216 | 1 | 217 | 8.28e-150 | 415 |
| MsG0780041149.01.T01 | MTR_2g086660 | 47.619 | 105 | 53 | 2 | 114 | 216 | 151 | 255 | 8.77e-20 | 85.1 |
| MsG0780041149.01.T01 | MTR_2g086660 | 47.059 | 102 | 52 | 2 | 114 | 213 | 151 | 252 | 8.34e-18 | 80.1 |
| MsG0780041149.01.T01 | MTR_4g132020 | 44.643 | 112 | 48 | 5 | 109 | 214 | 71 | 174 | 1.24e-17 | 77.4 |
| MsG0780041149.01.T01 | MTR_2g023070 | 34.081 | 223 | 110 | 10 | 13 | 214 | 10 | 216 | 1.15e-14 | 70.5 |
| MsG0780041149.01.T01 | MTR_2g023390 | 58.000 | 50 | 21 | 0 | 167 | 216 | 107 | 156 | 6.11e-14 | 67.0 |
| MsG0780041149.01.T01 | MTR_3g052330 | 33.803 | 142 | 66 | 4 | 102 | 216 | 58 | 198 | 1.08e-13 | 67.4 |
| MsG0780041149.01.T01 | MTR_7g101250 | 61.224 | 49 | 15 | 1 | 168 | 216 | 116 | 160 | 1.47e-11 | 60.8 |
| MsG0780041149.01.T01 | MTR_2g094410 | 61.224 | 49 | 15 | 1 | 168 | 216 | 112 | 156 | 1.93e-11 | 60.5 |
| MsG0780041149.01.T01 | MTR_2g018175 | 54.000 | 50 | 21 | 1 | 167 | 216 | 79 | 126 | 2.67e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041149.01.T01 | AT3G15040 | 50.000 | 116 | 53 | 3 | 105 | 216 | 129 | 243 | 2.07e-20 | 86.3 |
| MsG0780041149.01.T01 | AT4G21970 | 43.182 | 88 | 49 | 1 | 130 | 216 | 58 | 145 | 2.12e-17 | 76.6 |
| MsG0780041149.01.T01 | AT3G45210 | 58.333 | 60 | 21 | 1 | 157 | 216 | 93 | 148 | 2.50e-16 | 73.6 |
| MsG0780041149.01.T01 | AT4G04630 | 46.154 | 104 | 51 | 2 | 118 | 216 | 65 | 168 | 1.70e-14 | 68.9 |
| MsG0780041149.01.T01 | AT1G29640 | 45.455 | 88 | 37 | 3 | 129 | 216 | 63 | 139 | 8.28e-14 | 66.6 |
| MsG0780041149.01.T01 | AT4G26950 | 36.806 | 144 | 74 | 5 | 74 | 216 | 17 | 144 | 6.36e-12 | 61.6 |
| MsG0780041149.01.T01 | AT4G26950 | 36.806 | 144 | 74 | 5 | 74 | 216 | 17 | 144 | 6.36e-12 | 61.6 |
Find 84 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCATACTTGCTGTCCTATC+AGG | 0.339956 | 7:+87162736 | MsG0780041149.01.T01:CDS |
| GAGGAGGCGGTCCGAGGAGG+AGG | 0.366447 | 7:-87162542 | None:intergenic |
| TAGGAAGGTGTGGGGTCCAT+TGG | 0.377476 | 7:-87162505 | None:intergenic |
| GGAGGGGAATCGGCGGTGAT+AGG | 0.396483 | 7:-87162524 | None:intergenic |
| CGAGTCACCGCGGCGGTTGT+CGG | 0.399183 | 7:-87162761 | None:intergenic |
| TTCTCGGACGGTCTTGGTCT+CGG | 0.401381 | 7:-87162838 | None:intergenic |
| ATCATATTCTCGGACGGTCT+TGG | 0.405932 | 7:-87162844 | None:intergenic |
| ATCGCCGGCGGCAGAGGTGG+TGG | 0.406481 | 7:-87162587 | None:intergenic |
| AATCGACTCGGCGGCATAAT+CGG | 0.409285 | 7:-87162919 | None:intergenic |
| CGGAAACGAAGGAATCATTC+TGG | 0.409373 | 7:-87162818 | None:intergenic |
| TTCAATCAAGAAAACCGGTT+TGG | 0.414262 | 7:-87163137 | None:intergenic |
| AGCTCCTTCGGTTGAGGTGG+TGG | 0.424151 | 7:-87162676 | None:intergenic |
| GAGCTCATCGCCGGCGGCAG+AGG | 0.426626 | 7:-87162593 | None:intergenic |
| ACCGGTTCAATCAAGAAAAC+CGG | 0.431244 | 7:-87163142 | None:intergenic |
| CCTTCACCGGAGCAGATTGT+TGG | 0.453692 | 7:-87162894 | None:intergenic |
| TGTTGATGAGCTTGCGGTGT+TGG | 0.456949 | 7:+87162957 | MsG0780041149.01.T01:CDS |
| GGTCCGAGGAGGAGGGGAAT+CGG | 0.462015 | 7:-87162534 | None:intergenic |
| GAGATTGTTGCGAGAGGCTC+TGG | 0.469568 | 7:+87163021 | MsG0780041149.01.T01:CDS |
| GGCGGCAGAGGTGGTGGAAG+GGG | 0.469735 | 7:-87162581 | None:intergenic |
| CTCATCGCCGGCGGCAGAGG+TGG | 0.470652 | 7:-87162590 | None:intergenic |
| TCCTCCTCGGACCGCCTCCT+CGG | 0.471402 | 7:+87162544 | MsG0780041149.01.T01:CDS |
| GGCATAATCGGAACCTTCAC+CGG | 0.480745 | 7:-87162907 | None:intergenic |
| AACGCTGTTCTGCGCCAAAC+CGG | 0.488010 | 7:+87163123 | MsG0780041149.01.T01:CDS |
| CATGGATTGAATCATATTCT+CGG | 0.488021 | 7:-87162854 | None:intergenic |
| CATCAACATCCCTACGCCTC+GGG | 0.490643 | 7:-87162942 | None:intergenic |
| GGCGGTTGTCGGAGCCTGAT+AGG | 0.495981 | 7:-87162750 | None:intergenic |
| CGGCGGCAGAGGTGGTGGAA+GGG | 0.496749 | 7:-87162582 | None:intergenic |
| GGAGGCGGTCCGAGGAGGAG+GGG | 0.499298 | 7:-87162540 | None:intergenic |
| CGAGATAGCTCCTTCGGTTG+AGG | 0.501995 | 7:-87162682 | None:intergenic |
| CCGGCGGCAGAGGTGGTGGA+AGG | 0.503635 | 7:-87162583 | None:intergenic |
| AGTTGAAGGCGCCGAGGAGG+CGG | 0.512228 | 7:-87162555 | None:intergenic |
| AGGAGGCGGTCCGAGGAGGA+GGG | 0.512301 | 7:-87162541 | None:intergenic |
| CGGTGACGAGATAGCTCCTT+CGG | 0.514845 | 7:-87162688 | None:intergenic |
| CCGCCGATTCCCCTCCTCCT+CGG | 0.517457 | 7:+87162531 | MsG0780041149.01.T01:CDS |
| AAAACCGAAAAGGTAGTTCT+CGG | 0.517462 | 7:-87163051 | None:intergenic |
| AACTCCTTCCAAAACCGAAA+AGG | 0.517512 | 7:-87163061 | None:intergenic |
| GGGAATCGGCGGTGATAGGA+AGG | 0.518948 | 7:-87162520 | None:intergenic |
| CAAAGGGAGAGATCTTCGTC+AGG | 0.523089 | 7:+87163095 | MsG0780041149.01.T01:CDS |
| GCCGAGGAGGCGGTCCGAGG+AGG | 0.523179 | 7:-87162545 | None:intergenic |
| CCAACAATCTGCTCCGGTGA+AGG | 0.523875 | 7:+87162894 | MsG0780041149.01.T01:CDS |
| AGCTTCAGTGAGCTCATCGC+CGG | 0.525383 | 7:-87162602 | None:intergenic |
| ATTCTTCCAACAATCTGCTC+CGG | 0.527245 | 7:+87162888 | MsG0780041149.01.T01:CDS |
| GGTGGAAGGGGAGAAGTTGA+AGG | 0.527376 | 7:-87162569 | None:intergenic |
| CGAGTCGATTCCCGAGGCGT+AGG | 0.528775 | 7:+87162932 | MsG0780041149.01.T01:CDS |
| AATCATTCTGGAAGATGAAA+CGG | 0.532194 | 7:-87162806 | None:intergenic |
| CCTTCCACCACCTCTGCCGC+CGG | 0.535765 | 7:+87162583 | MsG0780041149.01.T01:CDS |
| GAGTCGATTCCCGAGGCGTA+GGG | 0.543346 | 7:+87162933 | MsG0780041149.01.T01:CDS |
| CGGCGGTGATAGGAAGGTGT+GGG | 0.546670 | 7:-87162514 | None:intergenic |
| TCATCAACATCCCTACGCCT+CGG | 0.557335 | 7:-87162943 | None:intergenic |
| CAACCGCCGCGGTGACTCGC+CGG | 0.566948 | 7:+87162765 | MsG0780041149.01.T01:CDS |
| TGATAGGACAGCAAGTATGC+CGG | 0.581191 | 7:-87162734 | None:intergenic |
| CTACGCCTCGGGAATCGACT+CGG | 0.583023 | 7:-87162931 | None:intergenic |
| TTCAGTGAGCTCATCGCCGG+CGG | 0.583955 | 7:-87162599 | None:intergenic |
| GGTGACTCGCCGGTGTTCCG+TGG | 0.584367 | 7:+87162775 | MsG0780041149.01.T01:CDS |
| GGAGTTGGAAGAACTCTCAA+AGG | 0.586119 | 7:+87163078 | MsG0780041149.01.T01:CDS |
| TTCAGATTCGGAGCTGTCGG+AGG | 0.599094 | 7:-87162641 | None:intergenic |
| GGCGCCGAGGAGGCGGTCCG+AGG | 0.599436 | 7:-87162548 | None:intergenic |
| GATAGCTCCTTCGGTTGAGG+TGG | 0.600291 | 7:-87162679 | None:intergenic |
| AGAAGTTGAAGGCGCCGAGG+AGG | 0.600990 | 7:-87162558 | None:intergenic |
| TTCGATCTATCTCAAGACTC+CGG | 0.602739 | 7:+87162715 | MsG0780041149.01.T01:CDS |
| TCGGCGGTGATAGGAAGGTG+TGG | 0.607076 | 7:-87162515 | None:intergenic |
| GAGTTGGAAGAACTCTCAAA+GGG | 0.607793 | 7:+87163079 | MsG0780041149.01.T01:CDS |
| CCGAGGAGGAGGGGAATCGG+CGG | 0.609319 | 7:-87162531 | None:intergenic |
| GGGAGAAGTTGAAGGCGCCG+AGG | 0.615412 | 7:-87162561 | None:intergenic |
| CGAAGGAGCTATCTCGTCAC+CGG | 0.620244 | 7:+87162689 | MsG0780041149.01.T01:CDS |
| ACGTCCACCACCTCAACCGA+AGG | 0.622595 | 7:+87162672 | MsG0780041149.01.T01:CDS |
| CCGCATGAGATTGTTGCGAG+AGG | 0.623615 | 7:+87163015 | MsG0780041149.01.T01:CDS |
| GATTGAATCATATTCTCGGA+CGG | 0.625190 | 7:-87162850 | None:intergenic |
| CTCGCAACAATCTCATGCGG+CGG | 0.633374 | 7:-87163012 | None:intergenic |
| GGTCTTGGTCTCGGAAACGA+AGG | 0.638096 | 7:-87162829 | None:intergenic |
| CATTCTGGAAGATGAAACGG+AGG | 0.639961 | 7:-87162803 | None:intergenic |
| CTTGAGATAGATCGAAACTC+CGG | 0.644038 | 7:-87162708 | None:intergenic |
| GAGGATTTACCACGGAACAC+CGG | 0.647471 | 7:-87162784 | None:intergenic |
| TGCCGCCGAGTCGATTCCCG+AGG | 0.656419 | 7:+87162926 | MsG0780041149.01.T01:CDS |
| TAGGGATGTTGATGAGCTTG+CGG | 0.658353 | 7:+87162951 | MsG0780041149.01.T01:CDS |
| GGCGGTGATAGGAAGGTGTG+GGG | 0.700557 | 7:-87162513 | None:intergenic |
| GGAACACCGGCGAGTCACCG+CGG | 0.700827 | 7:-87162771 | None:intergenic |
| CCTCTCGCAACAATCTCATG+CGG | 0.706742 | 7:-87163015 | None:intergenic |
| TCAGGCTCCGACAACCGCCG+CGG | 0.710525 | 7:+87162754 | MsG0780041149.01.T01:CDS |
| ATGAAACGGAGGATTTACCA+CGG | 0.717170 | 7:-87162792 | None:intergenic |
| ACACCGGCGAGTCACCGCGG+CGG | 0.727073 | 7:-87162768 | None:intergenic |
| TGATGATGATGACGACGGCG+AGG | 0.727843 | 7:+87162981 | MsG0780041149.01.T01:CDS |
| CGCCTCGGGAATCGACTCGG+CGG | 0.734091 | 7:-87162928 | None:intergenic |
| TTGGATGATGATGATGACGA+CGG | 0.783841 | 7:+87162976 | MsG0780041149.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATCATTCTGGAAGATGAAA+CGG | - | Chr7:87162809-87162828 | None:intergenic | 30.0% |
| ! | CATGGATTGAATCATATTCT+CGG | - | Chr7:87162857-87162876 | None:intergenic | 30.0% |
| !! | TGTTGGAAGAATTTTCTAGT+AGG | - | Chr7:87162880-87162899 | None:intergenic | 30.0% |
| !!! | ACGTTGTTGATTTTCAGATT+CGG | - | Chr7:87162656-87162675 | None:intergenic | 30.0% |
| AAAACCGAAAAGGTAGTTCT+CGG | - | Chr7:87163054-87163073 | None:intergenic | 35.0% | |
| GATTGAATCATATTCTCGGA+CGG | - | Chr7:87162853-87162872 | None:intergenic | 35.0% | |
| ! | CTGAAGCTGAACTTTTTAAC+TGG | + | Chr7:87162617-87162636 | MsG0780041149.01.T01:CDS | 35.0% |
| !! | GAAGAATTTTCTAGTAGGCA+TGG | - | Chr7:87162875-87162894 | None:intergenic | 35.0% |
| AACTCCTTCCAAAACCGAAA+AGG | - | Chr7:87163064-87163083 | None:intergenic | 40.0% | |
| ATGAAACGGAGGATTTACCA+CGG | - | Chr7:87162795-87162814 | None:intergenic | 40.0% | |
| ATTCTTCCAACAATCTGCTC+CGG | + | Chr7:87162888-87162907 | MsG0780041149.01.T01:CDS | 40.0% | |
| CTTGAGATAGATCGAAACTC+CGG | - | Chr7:87162711-87162730 | None:intergenic | 40.0% | |
| GAGTTGGAAGAACTCTCAAA+GGG | + | Chr7:87163079-87163098 | MsG0780041149.01.T01:CDS | 40.0% | |
| TTCGATCTATCTCAAGACTC+CGG | + | Chr7:87162715-87162734 | MsG0780041149.01.T01:CDS | 40.0% | |
| ! | ATTTTCAGATTCGGAGCTGT+CGG | - | Chr7:87162647-87162666 | None:intergenic | 40.0% |
| ! | GAGAACTACCTTTTCGGTTT+TGG | + | Chr7:87163053-87163072 | MsG0780041149.01.T01:CDS | 40.0% |
| ! | TTGGATGATGATGATGACGA+CGG | + | Chr7:87162976-87162995 | MsG0780041149.01.T01:CDS | 40.0% |
| !!! | ACTACCTTTTCGGTTTTGGA+AGG | + | Chr7:87163057-87163076 | MsG0780041149.01.T01:CDS | 40.0% |
| !!! | TTTTCGGTTTTGGAAGGAGT+TGG | + | Chr7:87163063-87163082 | MsG0780041149.01.T01:CDS | 40.0% |
| ATCATATTCTCGGACGGTCT+TGG | - | Chr7:87162847-87162866 | None:intergenic | 45.0% | |
| CGGAAACGAAGGAATCATTC+TGG | - | Chr7:87162821-87162840 | None:intergenic | 45.0% | |
| GGAGTTGGAAGAACTCTCAA+AGG | + | Chr7:87163078-87163097 | MsG0780041149.01.T01:CDS | 45.0% | |
| TGATAGGACAGCAAGTATGC+CGG | - | Chr7:87162737-87162756 | None:intergenic | 45.0% | |
| ! | CATTCTGGAAGATGAAACGG+AGG | - | Chr7:87162806-87162825 | None:intergenic | 45.0% |
| ! | TAGGGATGTTGATGAGCTTG+CGG | + | Chr7:87162951-87162970 | MsG0780041149.01.T01:CDS | 45.0% |
| ! | TTCGCCGAGAACTACCTTTT+CGG | + | Chr7:87163047-87163066 | MsG0780041149.01.T01:CDS | 45.0% |
| CAAAGGGAGAGATCTTCGTC+AGG | + | Chr7:87163095-87163114 | MsG0780041149.01.T01:CDS | 50.0% | |
| CCTCTCGCAACAATCTCATG+CGG | - | Chr7:87163018-87163037 | None:intergenic | 50.0% | |
| GAGGATTTACCACGGAACAC+CGG | - | Chr7:87162787-87162806 | None:intergenic | 50.0% | |
| GGCATAATCGGAACCTTCAC+CGG | - | Chr7:87162910-87162929 | None:intergenic | 50.0% | |
| TCATCAACATCCCTACGCCT+CGG | - | Chr7:87162946-87162965 | None:intergenic | 50.0% | |
| ! | TGTTGATGAGCTTGCGGTGT+TGG | + | Chr7:87162957-87162976 | MsG0780041149.01.T01:CDS | 50.0% |
| !! | AATCGACTCGGCGGCATAAT+CGG | - | Chr7:87162922-87162941 | None:intergenic | 50.0% |
| !! | GGCATACTTGCTGTCCTATC+AGG | + | Chr7:87162736-87162755 | MsG0780041149.01.T01:CDS | 50.0% |
| AACGCTGTTCTGCGCCAAAC+CGG | + | Chr7:87163123-87163142 | MsG0780041149.01.T01:CDS | 55.0% | |
| AGCTTCAGTGAGCTCATCGC+CGG | - | Chr7:87162605-87162624 | None:intergenic | 55.0% | |
| CATCAACATCCCTACGCCTC+GGG | - | Chr7:87162945-87162964 | None:intergenic | 55.0% | |
| CCAACAATCTGCTCCGGTGA+AGG | + | Chr7:87162894-87162913 | MsG0780041149.01.T01:CDS | 55.0% | |
| CCGCATGAGATTGTTGCGAG+AGG | + | Chr7:87163015-87163034 | MsG0780041149.01.T01:CDS | 55.0% | |
| CCTTCACCGGAGCAGATTGT+TGG | - | Chr7:87162897-87162916 | None:intergenic | 55.0% | |
| CGAAGGAGCTATCTCGTCAC+CGG | + | Chr7:87162689-87162708 | MsG0780041149.01.T01:CDS | 55.0% | |
| CGAGATAGCTCCTTCGGTTG+AGG | - | Chr7:87162685-87162704 | None:intergenic | 55.0% | |
| CGGTGACGAGATAGCTCCTT+CGG | - | Chr7:87162691-87162710 | None:intergenic | 55.0% | |
| CTCGCAACAATCTCATGCGG+CGG | - | Chr7:87163015-87163034 | None:intergenic | 55.0% | |
| GAGATTGTTGCGAGAGGCTC+TGG | + | Chr7:87163021-87163040 | MsG0780041149.01.T01:CDS | 55.0% | |
| GATAGCTCCTTCGGTTGAGG+TGG | - | Chr7:87162682-87162701 | None:intergenic | 55.0% | |
| GGTCTTGGTCTCGGAAACGA+AGG | - | Chr7:87162832-87162851 | None:intergenic | 55.0% | |
| GGTGGAAGGGGAGAAGTTGA+AGG | - | Chr7:87162572-87162591 | None:intergenic | 55.0% | |
| TTCAGATTCGGAGCTGTCGG+AGG | - | Chr7:87162644-87162663 | None:intergenic | 55.0% | |
| TTCTCGGACGGTCTTGGTCT+CGG | - | Chr7:87162841-87162860 | None:intergenic | 55.0% | |
| ! | TGATGATGATGACGACGGCG+AGG | + | Chr7:87162981-87163000 | MsG0780041149.01.T01:CDS | 55.0% |
| ACGTCCACCACCTCAACCGA+AGG | + | Chr7:87162672-87162691 | MsG0780041149.01.T01:CDS | 60.0% | |
| AGCTCCTTCGGTTGAGGTGG+TGG | - | Chr7:87162679-87162698 | None:intergenic | 60.0% | |
| CTACGCCTCGGGAATCGACT+CGG | - | Chr7:87162934-87162953 | None:intergenic | 60.0% | |
| GGGAATCGGCGGTGATAGGA+AGG | - | Chr7:87162523-87162542 | None:intergenic | 60.0% | |
| TCGGCGGTGATAGGAAGGTG+TGG | - | Chr7:87162518-87162537 | None:intergenic | 60.0% | |
| TTCAGTGAGCTCATCGCCGG+CGG | - | Chr7:87162602-87162621 | None:intergenic | 60.0% | |
| ! | CGGCGGTGATAGGAAGGTGT+GGG | - | Chr7:87162517-87162536 | None:intergenic | 60.0% |
| ! | GAGTCGATTCCCGAGGCGTA+GGG | + | Chr7:87162933-87162952 | MsG0780041149.01.T01:CDS | 60.0% |
| ! | GGCGGTGATAGGAAGGTGTG+GGG | - | Chr7:87162516-87162535 | None:intergenic | 60.0% |
| !! | AGAAGTTGAAGGCGCCGAGG+AGG | - | Chr7:87162561-87162580 | None:intergenic | 60.0% |
| GGAGGGGAATCGGCGGTGAT+AGG | - | Chr7:87162527-87162546 | None:intergenic | 65.0% | |
| GGCGGTTGTCGGAGCCTGAT+AGG | - | Chr7:87162753-87162772 | None:intergenic | 65.0% | |
| GGTCCGAGGAGGAGGGGAAT+CGG | - | Chr7:87162537-87162556 | None:intergenic | 65.0% | |
| ! | CGAGTCGATTCCCGAGGCGT+AGG | + | Chr7:87162932-87162951 | MsG0780041149.01.T01:CDS | 65.0% |
| !! | AGTTGAAGGCGCCGAGGAGG+CGG | - | Chr7:87162558-87162577 | None:intergenic | 65.0% |
| !! | GGGAGAAGTTGAAGGCGCCG+AGG | - | Chr7:87162564-87162583 | None:intergenic | 65.0% |
| AGGAGGCGGTCCGAGGAGGA+GGG | - | Chr7:87162544-87162563 | None:intergenic | 70.0% | |
| CCGAGGAGGAGGGGAATCGG+CGG | - | Chr7:87162534-87162553 | None:intergenic | 70.0% | |
| CCTTCCACCACCTCTGCCGC+CGG | + | Chr7:87162583-87162602 | MsG0780041149.01.T01:CDS | 70.0% | |
| CGAGTCACCGCGGCGGTTGT+CGG | - | Chr7:87162764-87162783 | None:intergenic | 70.0% | |
| GGAACACCGGCGAGTCACCG+CGG | - | Chr7:87162774-87162793 | None:intergenic | 70.0% | |
| GGTGACTCGCCGGTGTTCCG+TGG | + | Chr7:87162775-87162794 | MsG0780041149.01.T01:CDS | 70.0% | |
| TCAGGCTCCGACAACCGCCG+CGG | + | Chr7:87162754-87162773 | MsG0780041149.01.T01:CDS | 70.0% | |
| TCCTCCTCGGACCGCCTCCT+CGG | + | Chr7:87162544-87162563 | MsG0780041149.01.T01:CDS | 70.0% | |
| ! | TGCCGCCGAGTCGATTCCCG+AGG | + | Chr7:87162926-87162945 | MsG0780041149.01.T01:CDS | 70.0% |
| !! | CCGCCGATTCCCCTCCTCCT+CGG | + | Chr7:87162531-87162550 | MsG0780041149.01.T01:CDS | 70.0% |
| !! | CGCCTCGGGAATCGACTCGG+CGG | - | Chr7:87162931-87162950 | None:intergenic | 70.0% |
| !! | CGGCGGCAGAGGTGGTGGAA+GGG | - | Chr7:87162585-87162604 | None:intergenic | 70.0% |
| !! | GGCGGCAGAGGTGGTGGAAG+GGG | - | Chr7:87162584-87162603 | None:intergenic | 70.0% |
| ACACCGGCGAGTCACCGCGG+CGG | - | Chr7:87162771-87162790 | None:intergenic | 75.0% | |
| ATCGCCGGCGGCAGAGGTGG+TGG | - | Chr7:87162590-87162609 | None:intergenic | 75.0% | |
| CAACCGCCGCGGTGACTCGC+CGG | + | Chr7:87162765-87162784 | MsG0780041149.01.T01:CDS | 75.0% | |
| CTCATCGCCGGCGGCAGAGG+TGG | - | Chr7:87162593-87162612 | None:intergenic | 75.0% | |
| GAGCTCATCGCCGGCGGCAG+AGG | - | Chr7:87162596-87162615 | None:intergenic | 75.0% | |
| GAGGAGGCGGTCCGAGGAGG+AGG | - | Chr7:87162545-87162564 | None:intergenic | 75.0% | |
| GGAGGCGGTCCGAGGAGGAG+GGG | - | Chr7:87162543-87162562 | None:intergenic | 75.0% | |
| !! | CCGGCGGCAGAGGTGGTGGA+AGG | - | Chr7:87162586-87162605 | None:intergenic | 75.0% |
| ! | GCCGAGGAGGCGGTCCGAGG+AGG | - | Chr7:87162548-87162567 | None:intergenic | 80.0% |
| !! | GGCGCCGAGGAGGCGGTCCG+AGG | - | Chr7:87162551-87162570 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 87162508 | 87163158 | 87162508 | ID=MsG0780041149.01;Name=MsG0780041149.01 |
| Chr7 | mRNA | 87162508 | 87163158 | 87162508 | ID=MsG0780041149.01.T01;Parent=MsG0780041149.01;Name=MsG0780041149.01.T01;_AED=0.33;_eAED=0.33;_QI=0|-1|0|1|-1|1|1|0|216 |
| Chr7 | exon | 87162508 | 87163158 | 87162508 | ID=MsG0780041149.01.T01:exon:41294;Parent=MsG0780041149.01.T01 |
| Chr7 | CDS | 87162508 | 87163158 | 87162508 | ID=MsG0780041149.01.T01:cds;Parent=MsG0780041149.01.T01 |
| Gene Sequence |
| Protein sequence |
